Metagenome / Metatranscriptome Family F078972

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078972
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	55 residues
Representative Sequence	MAMNHSSSEEPRPAAIEKKPYEKPGFRYEKVFVTSALSCGKITSTQSGCKLNLSAS
Number of Associated Samples	89
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.73 %
% of genes near scaffold ends (potentially truncated)	14.66 %
% of genes from short scaffolds (< 2000 bps)	62.07 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.103 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.276 % of family members)
Environment Ontology (ENVO)	Unclassified (33.621 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.966 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00717	Peptidase_S24	49.14
PF05402	PqqD	6.03
PF00291	PALP	5.17
PF13186	SPASM	2.59
PF16697	Yop-YscD_cpl	2.59
PF13528	Glyco_trans_1_3	1.72
PF00873	ACR_tran	1.72
PF16491	Peptidase_M48_N	1.72
PF10417	1-cysPrx_C	0.86
PF00005	ABC_tran	0.86
PF13353	Fer4_12	0.86
PF12158	DUF3592	0.86
PF00498	FHA	0.86
PF01663	Phosphodiest	0.86
PF02567	PhzC-PhzF	0.86
PF07978	NIPSNAP	0.86
PF00072	Response_reg	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.10 %
Unclassified	root	N/A	6.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.10 %
Unclassified	root	N/A	6.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.10 %
Unclassified	root	N/A	6.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	71.55 %
Unclassified	root	N/A	6.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	37.07 %
Unclassified	root	N/A	6.90 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.17 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	37.07 %
Unclassified	root	N/A	6.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.17 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	37.07 %
Unclassified	root	N/A	6.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.17 %

Name	Rank	Taxonomy	Distribution
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	16.38 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	8.62 %
Unclassified	root	N/A	6.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.17 %

Name	Rank	Taxonomy	Distribution
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	16.38 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	8.62 %
Unclassified	root	N/A	6.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.17 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001084\|JGI12648J13191_1008426	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1016	Open in IMG/M
3300001593\|JGI12635J15846_10344735	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	915	Open in IMG/M
3300004080\|Ga0062385_10024214	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2340	Open in IMG/M
3300004082\|Ga0062384_101057251	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	583	Open in IMG/M
3300004091\|Ga0062387_100102052	All Organisms → cellular organisms → Bacteria	1545	Open in IMG/M
3300004091\|Ga0062387_100106926	All Organisms → cellular organisms → Bacteria	1519	Open in IMG/M
3300004102\|Ga0058888_1355865	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	807	Open in IMG/M
3300004139\|Ga0058897_11024782	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	7526	Open in IMG/M
3300004152\|Ga0062386_100366468	All Organisms → cellular organisms → Bacteria	1156	Open in IMG/M
3300004631\|Ga0058899_11660255	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300004635\|Ga0062388_100029368	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3341	Open in IMG/M
3300004635\|Ga0062388_100396189	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300005176\|Ga0066679_10885529	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	563	Open in IMG/M
3300005591\|Ga0070761_10009495	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	5499	Open in IMG/M
3300005591\|Ga0070761_10035527	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	2790	Open in IMG/M
3300005602\|Ga0070762_10010071	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	4727	Open in IMG/M
3300005602\|Ga0070762_11153767	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	535	Open in IMG/M
3300005610\|Ga0070763_10049295	All Organisms → cellular organisms → Bacteria	1998	Open in IMG/M
3300006028\|Ga0070717_10012825	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	6399	Open in IMG/M
3300006176\|Ga0070765_100263391	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1584	Open in IMG/M
3300009628\|Ga0116125_1003714	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	5035	Open in IMG/M
3300010859\|Ga0126352_1224253	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300011120\|Ga0150983_11893269	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300011120\|Ga0150983_12412473	All Organisms → cellular organisms → Bacteria → Acidobacteria	1355	Open in IMG/M
3300011120\|Ga0150983_13305449	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1757	Open in IMG/M
3300014489\|Ga0182018_10354303	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	790	Open in IMG/M
3300014489\|Ga0182018_10522131	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300014495\|Ga0182015_10000178	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	90236	Open in IMG/M
3300014501\|Ga0182024_10012534	All Organisms → cellular organisms → Bacteria → Acidobacteria	16747	Open in IMG/M
3300014501\|Ga0182024_10032352	All Organisms → cellular organisms → Bacteria	8910	Open in IMG/M
3300014501\|Ga0182024_10266126	All Organisms → cellular organisms → Bacteria → Acidobacteria	2287	Open in IMG/M
3300014657\|Ga0181522_10530023	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	711	Open in IMG/M
3300017822\|Ga0187802_10279131	All Organisms → cellular organisms → Bacteria → Acidobacteria	649	Open in IMG/M
3300017823\|Ga0187818_10117182	All Organisms → cellular organisms → Bacteria → Acidobacteria	1154	Open in IMG/M
3300018023\|Ga0187889_10101262	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300018042\|Ga0187871_10090841	All Organisms → cellular organisms → Bacteria → Acidobacteria	1769	Open in IMG/M
3300018043\|Ga0187887_10372423	All Organisms → cellular organisms → Bacteria → Acidobacteria	843	Open in IMG/M
3300018085\|Ga0187772_10020695	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	3777	Open in IMG/M
3300018086\|Ga0187769_10002085	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11605	Open in IMG/M
3300018086\|Ga0187769_10111918	All Organisms → cellular organisms → Bacteria	1971	Open in IMG/M
3300019158\|Ga0184580_121814	Not Available	665	Open in IMG/M
3300019159\|Ga0184574_124095	All Organisms → cellular organisms → Bacteria → Acidobacteria	931	Open in IMG/M
3300019194\|Ga0184586_140008	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	721	Open in IMG/M
3300019786\|Ga0182025_1077130	Not Available	1275	Open in IMG/M
3300020579\|Ga0210407_10121399	All Organisms → cellular organisms → Bacteria → Acidobacteria	1999	Open in IMG/M
3300020581\|Ga0210399_10044332	All Organisms → cellular organisms → Bacteria	3566	Open in IMG/M
3300020582\|Ga0210395_10001667	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	17242	Open in IMG/M
3300020582\|Ga0210395_10013509	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6034	Open in IMG/M
3300021171\|Ga0210405_10000030	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	184821	Open in IMG/M
3300021181\|Ga0210388_10013639	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	6499	Open in IMG/M
3300021181\|Ga0210388_10590743	All Organisms → cellular organisms → Bacteria → Acidobacteria	972	Open in IMG/M
3300021401\|Ga0210393_10219622	Not Available	1539	Open in IMG/M
3300021401\|Ga0210393_10243831	All Organisms → cellular organisms → Bacteria	1457	Open in IMG/M
3300021401\|Ga0210393_10932318	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	704	Open in IMG/M
3300021407\|Ga0210383_10966504	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300021474\|Ga0210390_10217999	All Organisms → cellular organisms → Bacteria → Acidobacteria	1615	Open in IMG/M
3300021474\|Ga0210390_11266044	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300021478\|Ga0210402_11489386	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	604	Open in IMG/M
3300021479\|Ga0210410_10205528	All Organisms → cellular organisms → Bacteria → Acidobacteria	1764	Open in IMG/M
3300022515\|Ga0224546_1016739	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300022521\|Ga0224541_1001069	All Organisms → cellular organisms → Bacteria	2662	Open in IMG/M
3300022527\|Ga0242664_1049896	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300022532\|Ga0242655_10022748	All Organisms → cellular organisms → Bacteria → Acidobacteria	1360	Open in IMG/M
3300022724\|Ga0242665_10273039	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300022726\|Ga0242654_10036477	All Organisms → cellular organisms → Bacteria → Acidobacteria	1319	Open in IMG/M
3300022726\|Ga0242654_10441598	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	506	Open in IMG/M
3300022732\|Ga0224569_100012	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11213	Open in IMG/M
3300024295\|Ga0224556_1014084	All Organisms → cellular organisms → Bacteria	2061	Open in IMG/M
3300025404\|Ga0208936_1000762	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	4222	Open in IMG/M
3300026320\|Ga0209131_1008689	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	6354	Open in IMG/M
3300027559\|Ga0209222_1106944	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300027648\|Ga0209420_1001524	All Organisms → cellular organisms → Bacteria → Acidobacteria	10898	Open in IMG/M
3300027648\|Ga0209420_1189922	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	549	Open in IMG/M
3300027676\|Ga0209333_1158167	All Organisms → cellular organisms → Bacteria → Acidobacteria	608	Open in IMG/M
3300027729\|Ga0209248_10082590	All Organisms → cellular organisms → Bacteria → Acidobacteria	973	Open in IMG/M
3300027737\|Ga0209038_10002816	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5145	Open in IMG/M
3300027783\|Ga0209448_10077559	All Organisms → cellular organisms → Bacteria → Acidobacteria	1115	Open in IMG/M
3300027855\|Ga0209693_10085689	All Organisms → cellular organisms → Bacteria	1557	Open in IMG/M
3300028785\|Ga0302201_10252889	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	714	Open in IMG/M
3300028906\|Ga0308309_10058743	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	2812	Open in IMG/M
3300029701\|Ga0222748_1087249	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300029943\|Ga0311340_10217344	All Organisms → cellular organisms → Bacteria → Acidobacteria	1903	Open in IMG/M
3300029944\|Ga0311352_10405697	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1115	Open in IMG/M
3300029986\|Ga0302188_10271671	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	704	Open in IMG/M
3300029999\|Ga0311339_10116112	All Organisms → cellular organisms → Bacteria → Acidobacteria	3248	Open in IMG/M
3300029999\|Ga0311339_10236013	All Organisms → cellular organisms → Bacteria	2026	Open in IMG/M
3300029999\|Ga0311339_11420055	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	622	Open in IMG/M
3300030058\|Ga0302179_10419127	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300030503\|Ga0311370_12472245	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300030549\|Ga0210257_10325554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1064	Open in IMG/M
3300030578\|Ga0210275_10324024	Not Available	544	Open in IMG/M
3300030738\|Ga0265462_12239444	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	539	Open in IMG/M
3300030741\|Ga0265459_13414337	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300030743\|Ga0265461_10034894	All Organisms → cellular organisms → Bacteria → Acidobacteria	1711	Open in IMG/M
3300030878\|Ga0265770_1002766	All Organisms → cellular organisms → Bacteria → Acidobacteria	2381	Open in IMG/M
3300031234\|Ga0302325_10134164	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	4494	Open in IMG/M
3300031525\|Ga0302326_10353181	All Organisms → cellular organisms → Bacteria → Acidobacteria	2310	Open in IMG/M
3300031708\|Ga0310686_109445411	All Organisms → cellular organisms → Bacteria → Acidobacteria	2019	Open in IMG/M
3300031708\|Ga0310686_116256277	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10997	Open in IMG/M
3300031715\|Ga0307476_10010525	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5767	Open in IMG/M
3300031715\|Ga0307476_10032331	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3485	Open in IMG/M
3300031754\|Ga0307475_10004474	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8651	Open in IMG/M
3300031962\|Ga0307479_10291882	All Organisms → cellular organisms → Bacteria → Acidobacteria	1612	Open in IMG/M
3300032160\|Ga0311301_10202209	All Organisms → cellular organisms → Bacteria	3401	Open in IMG/M
3300032515\|Ga0348332_10720332	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300032515\|Ga0348332_14397551	Not Available	892	Open in IMG/M
3300033824\|Ga0334840_141839	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300034124\|Ga0370483_0002164	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5347	Open in IMG/M
3300034124\|Ga0370483_0034168	All Organisms → cellular organisms → Bacteria → Acidobacteria	1557	Open in IMG/M
3300034163\|Ga0370515_0002200	All Organisms → cellular organisms → Bacteria	9758	Open in IMG/M
3300034163\|Ga0370515_0048505	All Organisms → cellular organisms → Bacteria	1876	Open in IMG/M
3300034163\|Ga0370515_0413031	All Organisms → cellular organisms → Bacteria → Acidobacteria	570	Open in IMG/M
3300034282\|Ga0370492_0024749	All Organisms → cellular organisms → Bacteria → Acidobacteria	2469	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.14%
Host-Associated	Host-Associated	0.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.62%
Aquatic	Environmental → Aquatic	15.52%
Plants	Host-Associated → Plants	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.97%
Freshwater	Environmental → Aquatic → Freshwater	15.52%
Peat	Environmental → Terrestrial → Peat	12.93%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.34%
Loam	Environmental → Terrestrial → Soil → Loam	19.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	15.52%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.10%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	12.07%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.03%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.72%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.28%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.34%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	8.62%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.76%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.17%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	5.17%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.45%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	3.45%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	3.45%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.59%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.59%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	2.59%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.72%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.72%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.86%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.86%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001084	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004102	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF212 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300019158	Soil microbial communities from Bohemian Forest, Czech Republic ? CSI1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019159	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019194	Soil microbial communities from Bohemian Forest, Czech Republic ? CSE1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022515	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 1-5	Environmental	Open in IMG/M
3300022521	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022732	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1	Host-Associated	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025404	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300028785	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029986	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_1	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030549	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO137-ANR102SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030578	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO105-VCO054SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300030878	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033824	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12648J13191_10084262	3300001084	Forest Soil	MAINQSSEEEPRPAAIEKKPYEKPGFRYEQVFVTSALTCGKISATQGACGSQKVS*
JGI12635J15846_103447352	3300001593	Forest Soil	MAINQSSGEEPRPAAIEKKPYEKPGFRYEQVFVTSALTCGKITSTSASCQMNRSAS*
Ga0062385_100242143	3300004080	Bog Forest Soil	MAINDSSGNDPRPTAIEKKPYEKPGFRYEQAFVTTALSCGKMVNGTQAACMASSKAS*
Ga0062384_1010572512	3300004082	Bog Forest Soil	MATNDSSSNEPRATSMEKKPYEKPGFRYEQAFVTTALSCGKMVNGTQGACMRSSSAS*
Ga0062387_1001020522	3300004091	Bog Forest Soil	MAMNHSSDEEPRPAAIAKKPYEKPGFRYEQVFVTSALSCGKVSSTQLNCIGQTKVS*
Ga0062387_1001069262	3300004091	Bog Forest Soil	MAVNHSSSEEPRPAAIGKKPYEKPGFRYEQVFVTSALSCGKVNSTELNCVGQTKVS*
Ga0058888_13558651	3300004102	Forest Soil	GKIIMAMNHLSSEEPRPAAIEKKPYEKPGFRYEKVFVTSALSCGKITSTQSGCKLNLSAS
Ga0058897_110247822	3300004139	Forest Soil	MAINQSSSDEPHPAAVEKKPYEKPGFRYEQVFVTSALSCGKVDPSQSGCSLNTKLS*
Ga0062386_1003664682	3300004152	Bog Forest Soil	MDIKKSSHEERDPASIAKKPYEKPGFRYEHVFVTSALSCGKMNAITSQCTTLSAS*
Ga0058899_116602551	3300004631	Forest Soil	MAMNQSSNDEPRPAAIEKKPYEKPGFRYEQVFVTSALGCGKMDPTQGACHLNTKS*
Ga0062388_1000293683	3300004635	Bog Forest Soil	MAINDTSSNEPRPTAIEKKPYEKPGFRYEQAFVTTALSCGKMVNGTQAACMASSKAS*
Ga0062388_1003961892	3300004635	Bog Forest Soil	MRTNDSSSEGPRPAAVEKKPYEKPGFRYEQVFVTSALSCGKMSPTQFGCASNLSAS*
Ga0066679_108855292	3300005176	Soil	MAMNQSSNDEPRSAASEKKPYEKPGFRYEQVFVTTALSCGKVDPTQQSCSAVTRS*
Ga0070761_100094954	3300005591	Soil	MPTKDSFNEGPRPAAVEKKTYEKPGFRYEQVFVTSALSCGKVSQTQFTCTSNLSAS*
Ga0070761_100355272	3300005591	Soil	MAINDSSSNEPRPTAIEKKPYEKPGFRYEQAFVTTALSCGKMVNGTQGACMRSSSAS*
Ga0070762_100100716	3300005602	Soil	MATNDSSGNEPRPTAIEKKPYEKPGFRYEQAFVTTALSCGKMVNGTQGSCMRSSSAS*
Ga0070762_111537672	3300005602	Soil	MAMNSSSNEGPRPAASEKKVYEKPGFRYEQVFVTSALNCGKVSSTDQNCRGLNSKVS*
Ga0070763_100492953	3300005610	Soil	MPTKDSFNEGPRPAAVEKKPYEKPGFRYEQVFVTSALSCGKVSQTQFTCTSNLSAS*
Ga0070717_100128252	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MAMNQSSNDGPHPAVTEKKPYEKPGFRYEQVFVTSAIGCGKVDPTQSGCNITTKS*
Ga0070717_113720141	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MATNHPSSEESNPEEIERRAYEKPSFRHEKVFVTSALTCGKMPA
Ga0070765_1002633912	3300006176	Soil	MAMNHSSGDEPRPAAIEKKPYEKPGFRYEQVFVTSALTCGKVTSTQASCTGNTKVS*
Ga0116125_10037144	3300009628	Peatland	MAINHSSGEEPRPAAIEKKPYDKPGFRHEQIFVTSALTCGKIDPTSLACKASSKVS*
Ga0126352_12242532	3300010859	Boreal Forest Soil	ESHLMSIKDSTSGEQRPAAVEKKPYEKPSFRYEQVFVTSALSCGKVTSSQSSCQLGGLSAS*
Ga0150983_118932691	3300011120	Forest Soil	MAMNESSREEPRPAAIEKKPYEKPAFRYEQVFVTSALSCGKVTSTQHGCLSALSAS*
Ga0150983_124124733	3300011120	Forest Soil	MAMNQSSNDEPRPTAIEKKPYEKPGFRYEEVFVTTALSCGKLTGGTGQDCMLNPKMS*
Ga0150983_133054492	3300011120	Forest Soil	MAMNHSSSEEPRPAAIEKKPYEKPGFRYEKVFVTSALSCGKITSTQSGCKLNLSAS*
Ga0182018_103543032	3300014489	Palsa	MAINHSSSEEPHPAAIEKKVYEKPGFRYEQVFVTSALTCGKVTSTQSSCTGNTKVS*
Ga0182018_105221312	3300014489	Palsa	MSTNHSSSEEPLPAAIEKKAYEKPRFRYEQVFVTSALSCSKNSDQSNCVLNPPTKVS*
Ga0182015_1000017877	3300014495	Palsa	MAMNHSSNEEPQSAVNIKKPYEKPGFRFDQVFVTSALSCGKITTSQGNCSGIHASAS*
Ga0182024_100125345	3300014501	Permafrost	MAINQSSEEEPRPAAIEKKPYEKPGFRYDRVFVTSALTCGKISSTQSSCILTSQKVS*
Ga0182024_100323526	3300014501	Permafrost	MAINQSSGEEPRPAAIEKKPYEKPGFRYEQVFVTSALTCGKITSTSGSCQMNPKVS*
Ga0182024_102661262	3300014501	Permafrost	MAMNNSSSEERHPAAIDKKPYEKPGFRYEQVFVTSALSCSKNSGSSSCMLNPPASAS*
Ga0181522_105300232	3300014657	Bog	MALNHSSSEEPRPAAIEKKPYEKPGFRYERVFVTSALTCGKISSTQSSCTNNMKVS*
Ga0187802_102791312	3300017822	Freshwater Sediment	MTTNSSSSNEPRPAASEKKPYEKPGFRFEQVFVTSALSCGKVNPTQSGCQGLSAKSS
Ga0187818_101171823	3300017823	Freshwater Sediment	MTTNSSSSNGPRPAAIEKKPYEKPGFRFEQVFVTSALSCGKVNPTQSSCQGLSNKAS
Ga0187889_101012623	3300018023	Peatland	MAMKNSSSEEPRPAAIEKKPYEKPGFRYEQVFVTSALSCGKLTSTQSGYSLNTKVS
Ga0187871_100908412	3300018042	Peatland	MEVNHSSSDELQFVEKVKKPYQKPAFRFEEVFVTSALSCGKITSTQSGCHGLTSAS
Ga0187887_103724232	3300018043	Peatland	MAINHSSGEEPRPAAIEKKPYDKPGFRHEQIFVTSALTCGKIDPTSLACKASQKVS
Ga0187772_100206951	3300018085	Tropical Peatland	MGINQSSGEEPRPAATGKKPYEKPAFRYEQVFVTSALTCGKVTTTQGNCASYLSAS
Ga0187769_100020855	3300018086	Tropical Peatland	MDMNHSTSGERQSEATGKKPYEKPSFRYEKIFVTSALSCGKITSTDLNCHTLSAS
Ga0187769_101119182	3300018086	Tropical Peatland	MAMNDSPKEEPRPAAIEKKPYERPAFRYEQVFVTSALGCGKTANSTQGACQLNVRS
Ga0184580_1218142	3300019158	Soil	MAINDSSSDEPRFAAIEKKPYEKPGFRFEQAFVTSALSCGKMVDGTQGSCMVSSKAS
Ga0184574_1240953	3300019159	Soil	MPTKDSFNEGPRPAAVEKKTYEKPGFRYEQVFVTSALSCGKVSQTQFTCTSNLSAS
Ga0184586_1400081	3300019194	Soil	SEGLRPAAVEKKTYEKPGFRYEQVFVTSALSCGKVSQTQFTCTSNLSAS
Ga0182025_10771303	3300019786	Permafrost	MAMNNSSSEERHPAAIDKKPYEKPGFRYEQVFVTSALSCSKNSGSSSCMLNPPASAS
Ga0210407_101213994	3300020579	Soil	MAMNHSSSEEPRPAAIEKKPYEKPGFRYEKVFVTSALSCSKITSTQSGCQHQLSAS
Ga0210399_100443325	3300020581	Soil	MAMNQSSNDEPRPTAIEKKPYEKPGFRYEEVFVTTALSCGKLTGGTGQDCMLNPKMS
Ga0210395_100016676	3300020582	Soil	MAINDSSSNGPRPAPIEKKPYEKPGFRYEQAFVTTALSCGKMVNGTQGACMRSSSAS
Ga0210395_100135096	3300020582	Soil	MATNDSSGNEPRPTAIEKKPYEKPGFRYEQAFVTTALSCGKMVNGTQGSCMRSSSAS
Ga0210405_100000303	3300021171	Soil	MAINQSSSDEPHPAAVEKKPYEKPGFRYEQVFVTSALSCGKVDPSQSGCSLNTKLS
Ga0210388_100136393	3300021181	Soil	MAMNSSSNEGPRPAAIEKKVYEKPGFRYEQVFVTSALNCGKVSSTDQNCRGLNSKVS
Ga0210388_100180307	3300021181	Soil	MAMNHSSSEEPRPAAIAKKPYEKPGFRYEQVFVTSALGCGKTSNEGSCHLNSKTS
Ga0210388_105907432	3300021181	Soil	MSINESSNDEPLFAAIEKKTYEKPGYRYEQVFVTSALTCGKMTSTQTGCSLNTKLS
Ga0210393_102196222	3300021401	Soil	MATNDSSGNEPRPTAIEKKPYEKPGFRYEQAFVTTALSCGKMVNGTQGSCMR
Ga0210393_102438313	3300021401	Soil	SSGNEPRPTAIEKKPYEKPGFRYEQAFVTTALSCGKMVNGTQGSCMRSSSAS
Ga0210393_109323181	3300021401	Soil	MAMNHSSSEEPRPAAIEKKPYEKPGFRYEKVFVTSALSCSKITSTQSGCQHNLSAS
Ga0210383_109665042	3300021407	Soil	MAKNQSSSDEPRPAAIEKKPYEKPGFRYEQVFVTSALGCGKMDPTQGACHLNTKS
Ga0210390_102179992	3300021474	Soil	MAMNESSREEPRPAAIEKKPYEKPAFRYEQVFVTSALSCGKVTSTQHGCLSALSAS
Ga0210390_112660442	3300021474	Soil	MAINDSSSNEPRPTAIEKKPYEKPGFRYEQAFVTTALSCGKMVNGTQGACMRSSSAS
Ga0210402_114893861	3300021478	Soil	MAMNNSSSEGPRPAAIEKKPYEKPGFRHEQVFVTSALSCGKMVGSTQGECGLNSKVS
Ga0210410_102055281	3300021479	Soil	MAMNHSSSEEPRPAAIEKKPYEKPGFRYEKVFVTSALSCGKITSTQSGCKLNLSAS
Ga0224546_10167391	3300022515	Soil	MTMNHSSSEGPRPAAIEKKPYEKPGFRYERVFVTSALTCGKISGTQSSCTGNMKVS
Ga0224541_10010692	3300022521	Soil	MAINQSSGEEPRPAAIEKKPYEKPGFRYEQVFVISALTCGKISPTQGSCTSLKVS
Ga0242664_10498962	3300022527	Soil	MAMNNSSSEEPRPAAIEKKPYEKPGFRYEKVFVTSALSCSKITSTQSGCQHNLSAS
Ga0242655_100227481	3300022532	Soil	MAMNHSSSEEPRPAAIEKKPYEKPGFRYEKVFVTSALSCSKITSTQTGCQHNLSAS
Ga0242665_102730391	3300022724	Soil	MAMNESSREEPRPAAIEKKPYEKPAFRYEQVFVTSALSCGKVTSTQHGCHSNLSAS
Ga0242654_100364772	3300022726	Soil	MAMNHSSSEEPRPAAIEKKPYEKPGFRYEKVFVTSALSCSKITSTQSGCQH
Ga0242654_104415982	3300022726	Soil	MAINNPSSEEPRPAAIEKKPYEKPGFRYEQVFVTSALSCGKVDPSSLTCHNNTKVS
Ga0224569_1000125	3300022732	Rhizosphere	MAMNHSSNEEPQSAVNIKKPYEKPGFRFDQVFVTSALSCGKITTSQGNCSGIHASAS
Ga0224556_10140842	3300024295	Soil	MAMNQSSSEEPRPAAIEKKPYEKPGFRYEQVFVTSALGCGKMTTTQSGCSLNTKS
Ga0208936_10007625	3300025404	Peatland	MAINHSSGEEPRPAAIEKKPYDKPGFRHEQIFVTSALTCGKIDPTSLACKASSKVS
Ga0209131_10086897	3300026320	Grasslands Soil	MSINHSLSDEPRPAASEKKPYEKPGFRYEQVFVTSAIGCGKVDPTQSGCNITTRS
Ga0209222_11069442	3300027559	Forest Soil	MDIKNSSSEEPQSAAIIKKPYEKPGFRYEQVFVTSALGCGKVDSQSGCFGQTKNS
Ga0209420_100152412	3300027648	Forest Soil	MAINQSSEEEPRPAAIEKKPYEKPGFRYEQVFVTSALTCGKISATQGACGSQKVS
Ga0209420_11899221	3300027648	Forest Soil	MAINQSSGEEPRPAAIEKKPYEKPGFRYEQVFVTSALTCGKITSTSASCQMNRS
Ga0209333_11581671	3300027676	Forest Soil	MPTNDSSSEGLRPAAVEKKTYEKPGFRYEQVFVTSALSCGKVSQTQFNCTSNLSAS
Ga0209248_100825902	3300027729	Bog Forest Soil	MAINDTSSNEPRPTAIEKKPYEKPGFRYEQAFVTTALSCGKMVNGTQAACMASSKAS
Ga0209038_100028166	3300027737	Bog Forest Soil	MRTNDSSSEGPRPAAVEKKPYEKPGFRYEQAFVTTALSCGKMVNGTQAACMASSKAS
Ga0209448_100775592	3300027783	Bog Forest Soil	MAMNHSSDEEPRPAAIAKKPYEKPGFRYEQVFVTSALSCGKVSSTQLNCIGQTKVS
Ga0209274_105338161	3300027853	Soil	MAMNHSSSEEPRPAAIEKKAYEKPGFRYEQVFVTSALTCGKVTSTQ
Ga0209693_100856891	3300027855	Soil	MPTKDSFNEGPRPAAVEKKPYEKPGFRYEQVFVTSALSCGKVSQTQFTCTSNLSAS
Ga0302201_102528892	3300028785	Bog	AMNQSSSEEPRPAAIEKKPYEKPGFRYEQVFVTSALGCGKMTTTQSGCSLNTKS
Ga0308309_100587435	3300028906	Soil	MAMNHSSGDEPRPAAIEKKPYEKPGFRYEQVFVTSALTCGKVTSTQASCTGNTKVS
Ga0222748_10872492	3300029701	Soil	LIMAKNQSSSDEPRPAAIEKKPYEKPGFRYEQVFVTSALGCGKMDPTQGACHLNTKS
Ga0311340_102173442	3300029943	Palsa	MAMNHSSSEEPRPAAIEKKPYEKPGFRYERVFVTSALTCGKISSTQSSCNNNMKVS
Ga0311352_104056972	3300029944	Palsa	MAMNHSSSEGPRPAAIEKKPYEKPGFRYEQVFVTSALTCGKISGTQASCTGNMKAS
Ga0302188_102716712	3300029986	Bog	MAMNQSSSEEPRPAAIEKKPYEKPGFRYEQVFVTSALGCGKMTTTQSGCSLN
Ga0311339_101161122	3300029999	Palsa	MAINHSSREEPRPAAIEKKPYEKPGFRYEQVFVTSALTCGKVTSTQASCTGNTKVS
Ga0311339_102360133	3300029999	Palsa	MAMNHSSSEGPRPAAIEKKPYEKPGFRYEQVFVTSALTCGKISGTQASCQGNMKAS
Ga0311339_114200552	3300029999	Palsa	MAINHSSGEEPRPAAIEKKPYDKPGFRHEQIFVTSALTCGKIDPTSLACKASHKVS
Ga0302179_104191272	3300030058	Palsa	GEEPRPAAIEKKPYDKPGFRHEQIFVTSALTCGKIDPTSLACKASHKVS
Ga0311370_124722451	3300030503	Palsa	MAINQSSEEEPRPAAIEKKPYEKPGFRYDRVFVTSALTCGKISSTQSSCILTSQKVS
Ga0210257_103255541	3300030549	Soil	AINDTSGNEPRPTAIEKKPYEKPGFRYEQAFVTTALSCGKMVNGTQGACMRSSSAS
Ga0210275_103240241	3300030578	Soil	IIMAIDNSSSEEPQSAATFKKPYEKPGFRFDQVFVTSALSCGKVISTQGGCQNVSSKVS
Ga0265462_122394442	3300030738	Soil	EAPRPAAVEKKPYEKPGFRYEQVFVTSALSCGKMSPTQFRCASNLSAS
Ga0265459_134143372	3300030741	Soil	MAINDTSGNEPRPTAIEKKPYEKPGFRYEQAFVTTALSCGKMVNGTQGACMRSSSAS
Ga0265461_100348942	3300030743	Soil	MAINQSSSEGPRPAAIEKKPYEKPGFRYEQVFVTSALTCGKITTTQSGCSLNTKVS
Ga0265770_10027661	3300030878	Soil	MAMNSSSNEGPRPAAIEKKVYEKPGFRYEQVFVTSALNCGKVSSTDQNCRGLNSK
Ga0302325_101341645	3300031234	Palsa	MAINHSSMEEPRPAAIEKKPYEKPGFRYEQVFVTSALTCGKVTSTQASCTGNTKVS
Ga0302326_103531812	3300031525	Palsa	MAINHSSGEEPRPAAIEKKPYDKPGFRHEQIFVTSALTCGKIDPTSLACKASPKVS
Ga0310686_1094454112	3300031708	Soil	MAINQSSGEEPHPAAIEKKPYEKPGFRYEQVFVTSALGCGKVDASQGGCAHTTNKS
Ga0310686_1162562779	3300031708	Soil	MPTNDSSSEGLRPAAVEKKTYEKPGFRYEQVFVTSALSCGKVSQTQFTCTSNLSAS
Ga0307476_100105256	3300031715	Hardwood Forest Soil	MPTNDSSSEGPRPAAVEKKPYEKPGFRYEQVFVTSALSCGKTAPTQFGCSSNLSAS
Ga0307476_100323316	3300031715	Hardwood Forest Soil	GNEPRPTAIEKKPYEKPGFRYEQAFVTTALSCGKMVNGTQGSCMRSSSAS
Ga0307475_100044742	3300031754	Hardwood Forest Soil	MALNHSSNDEPRPAAVEKKPYEKPGFRYEQVFVTSALSCGKVNPTQSGCSNNLKLS
Ga0307479_102918823	3300031962	Hardwood Forest Soil	MTMNGSSSNEPRPAAVEKKPYEKPGFRFEQVFVTSALSCGKVNPTQGGCQGLSNKAS
Ga0311301_102022094	3300032160	Peatlands Soil	MGMNQSSSGEPHPAATEKKPYEKPGFRYEQVFVTSALSCGKINPSSLNCSQNTKVS
Ga0348332_107203321	3300032515	Plant Litter	LMPMDHSPSEQPPAAANDKKPYEKPAFRHEQVFVTTALSCGKVVGGTGACGLNGSSS
Ga0348332_143975513	3300032515	Plant Litter	MAINDSSNNQSRPSAIEKKPYEKPGFRFEQAFVTSALSCGKMVDGTQGSCMVSSKAS
Ga0334840_141839_6_167	3300033824	Soil	MNQSSSEEPRPAAIEKKPYEKPGFRYEQVFVTSALGCGKMTTTQSGCSLNTKS
Ga0370483_0002164_2574_2762	3300034124	Untreated Peat Soil	VKREKIMGNNQSQSDEPRPAASEKKPYEKPGFRYEQVFVTSALGCGKTSDSVLGACQQASKS
Ga0370483_0034168_889_1056	3300034124	Untreated Peat Soil	MTSNQSSGEESRPAAIEKKPYEKPGFRYEQVFVTSALTCGKISTTQGACSSSKVS
Ga0370515_0002200_3822_3995	3300034163	Untreated Peat Soil	MMAMNQSSNDEPRGAAIEKKKYEKPGFRYEQVFVTSALGCGKTNSTEGSCQHTTSKS
Ga0370515_0048505_1006_1176	3300034163	Untreated Peat Soil	MAINQSSGEEPRPAAIEKKPYEKPGFRYEQVFVTSALTCGKITSTSGSCQMNPKVS
Ga0370515_0413031_174_344	3300034163	Untreated Peat Soil	MAMNSSSGEEPQSAGVEKKPYEKPGFRFEQAFVTSALSCGKVVQSQSGCNLNTKVS
Ga0370492_0024749_885_1052	3300034282	Untreated Peat Soil	MAMNQSSSEEPRPAAIEKKPYEKPGFRYEQVFVTSALGCGKTTTTESGCSLNTKS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078972

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences