Metagenome / Metatranscriptome Family F078953

Basic Information
Family ID	F078953
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	45 residues
Representative Sequence	MKDTIVQGLQQAYYNLVHMIAEFLPRFVVMLVIILVGLLVAY
Number of Associated Samples	108
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.552 % of family members)
Environment Ontology (ENVO)	Unclassified (31.034 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.207 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.14% β-sheet: 0.00% Coil/Unstructured: 42.86%
Feature Viewer

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Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF16657	Malt_amylase_C	6.03
PF00535	Glycos_transf_2	0.86
PF05088	Bac_GDH	0.86
PF00128	Alpha-amylase	0.86
PF00141	peroxidase	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.86
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.86
COG0376	Catalase (peroxidase I)	Inorganic ion transport and metabolism [P]	0.86
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.86
COG2902	NAD-specific glutamate dehydrogenase	Amino acid transport and metabolism [E]	0.86
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.86

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.55%
Host-Associated	Host-Associated	3.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.90%
Aquatic	Environmental → Aquatic	14.66%
Plants	Host-Associated → Plants	3.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.17%
Freshwater	Environmental → Aquatic → Freshwater	11.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.45%
Sediment	Environmental → Aquatic → Sediment	2.59%
Peat	Environmental → Terrestrial → Peat	1.72%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.62%
Loam	Environmental → Terrestrial → Soil → Loam	18.97%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.72%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.38%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.59%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.59%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.59%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.72%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.34%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.76%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.03%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.17%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.45%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.59%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.59%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.72%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.72%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.72%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.86%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035918004	Soil microbial communities from sample at FACE Site 2 North Carolina CO2-	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001089	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3	Environmental	Open in IMG/M
3300001167	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015197	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300023056	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2	Environmental	Open in IMG/M
3300024287	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK31	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025664	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026214	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026351	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030842	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031240	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG	Host-Associated	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCA_3548360	2035918004	Soil	MKEMILRGLQQAYENMVHMIAEFLPRFVVMFIIMLFGFLVALLLNTW
JGI12270J11330_100876121	3300000567	Peatlands Soil	MRQTILQGLEQAYGNLVHMIADFLPRFLVMLIIIV
JGI1027J12803_1062170323	3300000955	Soil	MRQIILQGLEQVYSKLFHMIAEFLPRFLVMLIIVSIGLLVALVLRYILRGVLGLTKLDRVAEQSG
JGI12683J13190_10191432	3300001089	Forest Soil	MRQAILQGLEQAYTNLVHMIADFLPRFLVMLIIIVLGLLVAFLLKYILRGVLSL
JGI12673J13574_10001133	3300001167	Forest Soil	MRVTIVQGLEQAYYNLVHMVAEFLPRFVVMVVIILVGLLAAYLLGHMFRA
JGI12712J15308_100688402	3300001471	Forest Soil	MRVTIVQGLEQAYYNLVHMIAEFLPRLVVMLVIILVGLLAAY
JGI12635J15846_108392371	3300001593	Forest Soil	MRDVIVRGLEQAYDNSVHMIAEFLPRFVVMLIIVLIGLVVA
JGI12053J15887_102383362	3300001661	Forest Soil	MKDTIVQGLEQAYYNLVHMIAEFLPRFVVMLVIIAVG
JGIcombinedJ26739_1015283161	3300002245	Forest Soil	MRETILRGLEQAYENLVHMIADFLPRLAVMVVIILAGLLVAFLFKYLLRFILHLT
JGIcombinedJ51221_103977712	3300003505	Forest Soil	MKDTIVQGLQQAYLNLFHMISEFLPRLVVMLVIILSGLLVAYALRYVVRAI
Ga0062384_1011761961	3300004082	Bog Forest Soil	MKDTIVRGLAQAYDNLVHMIADFVPRFVVMLIIILAGLAIAFLLKKILRYIL
Ga0062389_1044705602	3300004092	Bog Forest Soil	MKDTIIQGLQQAYQNLFHMIAEFLPRVVVMLVIVLTGVLVA
Ga0062388_1023388611	3300004635	Bog Forest Soil	MRETIIQGLTQAYGNLVHMVADFLPRFVVMFAIILAGLLVAFLL
Ga0070694_1001747891	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MRVMIVQGLQQAYQNLFHMFAEFLPRFVVMLVIIVSGLLV
Ga0070762_101474211	3300005602	Soil	MKDLIIQGLQQAYQNLVHMISVFLPRLVAMLLIMLAGLF
Ga0070763_108290802	3300005610	Soil	MKDAIVQGLQQAYQNMSQMIAQFLPRLVVMLVIVLTGVLV
Ga0070766_111366141	3300005921	Soil	MKDLIIQGLQQAYQNLVHMISVFLPRLVAMLLIMLAG
Ga0080027_104011881	3300005993	Prmafrost Soil	MKDTIVQGLQQAYYNLVHMIAEFLPRFVVMLVIILVGLLVAY
Ga0066790_101248021	3300005995	Soil	MKDTIVQGLQQAYLNLFHMIAEFLPRLVVMLVIILSGLLVAYALKYAVRAVLR
Ga0075017_1003073381	3300006059	Watersheds	MRQTILQGLEQAYGNLVHMIADFLPRFLVMLIIIVFG
Ga0075030_1010109731	3300006162	Watersheds	MRQTILQGLGQAYGNLVHMIADFLPRFLVMLIIIVFGLLVA
Ga0070765_1011723612	3300006176	Soil	MRVTIVQGLQQAYYNLVHMIAEFLPRLVVMVVIILVGLLAAYL
Ga0099791_105822842	3300007255	Vadose Zone Soil	MKNLIIQGIEQAYQNLVHMLAEFLPRLVVMLVIVV
Ga0116214_10686011	3300009520	Peatlands Soil	MRQTILQGLEQAYGNLVHMIADFLPRFLVMLIIIVLGLLVAFLLKYILRI
Ga0116225_11808902	3300009524	Peatlands Soil	MRETILQGLEQAYRNLGRMIAEFLPRFLVMLIIIAIGLLVALALKYILRALLRLT
Ga0116133_12307602	3300009623	Peatland	MRDTILRGLAQAYENLVHMIADFLPRFAVMLTIILVGLLIAFLL
Ga0116135_10708012	3300009665	Peatland	MRDTILRGLAQAYENLVHMIADFLPRFVVMLTIILAGLLIAFVL*
Ga0126374_104064962	3300009792	Tropical Forest Soil	MKAMIVQGLQQAYQNLVHMIAEFLPRFVVMLIVILAGLLVAYLL
Ga0126373_120809282	3300010048	Tropical Forest Soil	MKAMIVQGLQQAYQNLVHMIAEFLPRFVVMLIVILAGLL
Ga0136449_1026580571	3300010379	Peatlands Soil	MRQTILQGLGQAYGNLVHMIADFLPRFLVMLIIIVFGLLVAFLLKYILRIVLNLTK
Ga0134127_116082551	3300010399	Terrestrial Soil	MIVQGLQQAYQNIFHMCAEFLGRFVVMLVIIVSGLLVA
Ga0134121_107633032	3300010401	Terrestrial Soil	MKDTIIQGLQQAYQNMAQMIAQFLPRLVVMLVIVI
Ga0120118_11695781	3300012010	Permafrost	MRQAILQGLEQAYSNLVHMIADFLPRFLVMLIIIVLGLLVAFALKYILRIVLS
Ga0137378_116353452	3300012210	Vadose Zone Soil	MKEMILRGLQQAYENMVHMIAEFLPRFVVMFIIMSFGWLV
Ga0137377_107844182	3300012211	Vadose Zone Soil	MKEMILRGLQQAYENMVHMIAEFLPRFVVMFIIMSFGWLVALLLKYLVRAI
Ga0137361_104381821	3300012362	Vadose Zone Soil	MKEMILRGLQQAYENMVHMIAEFLPRFVVMFIIMLFGWLVAL
Ga0137390_115709142	3300012363	Vadose Zone Soil	MRQTILQGLEQAYGNLVHMIADFLPRFLVMLIIIVLGLLVAFVLKYILRTVL
Ga0137419_115735271	3300012925	Vadose Zone Soil	MKEMIVRGLQQAYENMVHMIAEFLPRFVVMFIIMLF
Ga0137416_105815761	3300012927	Vadose Zone Soil	MKEMIIHGLGQAYENLVRMFADFLPRLVVMLVIVV
Ga0157373_112931011	3300013100	Corn Rhizosphere	MKDTIIQGLQQAYQNMAQMIAQFLPRLVVMLVIVITGVLVAYAFKYVARM
Ga0134075_105260551	3300014154	Grasslands Soil	MKEMILRGLQQAYENMVHMIAEFLPRFVVMFIIMSFGWLVALLLKYLVRAILHL
Ga0181518_101068811	3300014156	Bog	MRDTILRGLAQAYENLVHMIADFLPRFVVMLTIILAGLVIAFLLKSVLRSILHLTKLD
Ga0181531_104719011	3300014169	Bog	MRETILRGLTQAYENLVHMIADFLPRFVVMLTIILAGLL
Ga0157379_125499542	3300014968	Switchgrass Rhizosphere	MKDTIIQGLQQAYQNMAQMIAQFLPRLVVMLVIVITGVLVA
Ga0167638_10274552	3300015197	Glacier Forefield Soil	MRVTIVQGLEQAYYNLVHMIAEFLPRFVVMVVIILVGLLAAYLLGHLVRAVL
Ga0187824_100696791	3300017927	Freshwater Sediment	MKDMIIRGLQQAYVNMTHMMAEFLPRHAVMLIIGLVGLLVALSFKYLLRAILHLTRLDR
Ga0187801_104135252	3300017933	Freshwater Sediment	MRETFLQALEQAYNNFVRMVAEFLPHFLVMMIIILVGLLVA
Ga0187863_101936861	3300018034	Peatland	MRDIILRGLAQAYENLVHMIADFLPRFVVMLTIILAG
Ga0187871_105622762	3300018042	Peatland	MRDTILRGLAQAYENLVHMIADFLPRFVVMLTIILAGLLIAFLLKSILRSILHLTKLDRI
Ga0187851_104542141	3300018046	Peatland	MRDTILRGLAQAYENLVHMIADFLPRFVVMLTIILAGLLIAFVLKSILRSILHLTK
Ga0187859_106769951	3300018047	Peatland	MKETILQGLEQAYRNFIHMVAEFLPHFLVMLIIIVVGLLVAFVLKYTLRTVLRLTKLDR
Ga0066655_109899431	3300018431	Grasslands Soil	MKEMILRGLQQAYENMVHMIAEFLPRFVVMFIIISFGWLFALLLDYLVRAIVLFTKL
Ga0193728_13468782	3300019890	Soil	MRQTILQGLQQAYDNLVHMIADFLPRFLVMIIIVLLGLL
Ga0193726_10021341	3300020021	Soil	MKEMIVRGLQQAYENMVHMIAEFLPRFVVMFIIVAAGWLIALLLK
Ga0179594_101775201	3300020170	Vadose Zone Soil	MKDVIIQGIEQAYQSLVHMLAEFLPRLVVMLVIVAAGFLI
Ga0210407_106007161	3300020579	Soil	MRVTIVQGLEQAYYNLVHMIAEFLPRLVVMLVIILVGLLAAYLLGH
Ga0210403_110026911	3300020580	Soil	MRQTILQGLEQAYNNLVHMIADFLPRFLVMLIIIVVGLLVAFAL
Ga0210399_104685291	3300020581	Soil	MKAMIVQGLEQAYQNLVHMLAEFLPRFVVMLVIIV
Ga0210395_104649261	3300020582	Soil	MKAMIVQGLEQAYQNLVHMLAEFLPRFVVMLVIIVAGLIISY
Ga0210401_103243842	3300020583	Soil	MRETILQGLEQAYWNFVHMIAEFLPHFVVMLIIIAVGLL
Ga0210401_108211572	3300020583	Soil	MRQTILQGLEQVYSNLAHMIAEFLPRFLVMLIIIVIGLLVAF
Ga0210404_105820752	3300021088	Soil	MKAMIVQGLEQAYQNLVHMLAEFLPRFVVMLVIIVAGLLIAYALKYILRALLHL
Ga0210406_105444612	3300021168	Soil	MKETILQALEQVYSNLVHMVAEFLPRFLVMLIIIAIGLLVAFILRQMLRALLGLT
Ga0210406_111891122	3300021168	Soil	MRQTILQGLEQVYRNLVHMIAEFLPRFLVMLIIIVIGSFVAFVFRYIVRVLLGFTKL
Ga0210406_113289371	3300021168	Soil	MRQTILQALEEVYGNLVHMIAEFLPRFLVMLIIIVIGLLAAFVLKYILRALLGLTK
Ga0210408_112100521	3300021178	Soil	MRQTILQGLEQAYSNLVHMIADFLPRLMVMLIIIA
Ga0210393_106443342	3300021401	Soil	MRQTILQGLEQAYSNLVHMIADFLPRFLVMLIIIVIGLFVAFLFKYIL
Ga0210385_101419251	3300021402	Soil	MKDTIVQGLQQAYLNLFHMIAEFLPRLVVMLVIILSGLLVAYALK
Ga0210394_102487262	3300021420	Soil	MKETILQALEQVYSNLVHMVAEFLPRFLVMLIIIAIGL
Ga0210394_115205711	3300021420	Soil	MRQIILQGLEQVYSNLVHMVAEFLPRFLVMLSIILIGL
Ga0210402_116370941	3300021478	Soil	MKAMIVQGLEQAYQNLVHMLAEFLPRFVVMLVIIVAGLLIA
Ga0210402_120207012	3300021478	Soil	MKDTIFQGLQQAYLNLFHMIAEFLPRLVVMLVIILSGLL
Ga0210409_100689663	3300021559	Soil	MRQTIVRALEEVYGNLVHMIAEFLPRFLVMLIIIAIGL
Ga0210409_104199112	3300021559	Soil	MRQTILQGLEQAYSNLVHMIADFLPRLMVMLIIIAIGLLVAFL
Ga0233357_10438121	3300023056	Soil	MRVTIVQGLEQAYYNLVHMIAEFLPRFLVMLVIILVGLFAAYLLGQMFR
Ga0247690_10484462	3300024287	Soil	MRQIILQGLEQVYSKLVHMIAEFLPRFLVMLIIFLFG
Ga0137417_14515954	3300024330	Vadose Zone Soil	MKDVIIQGIEQAYQHLILMLAEFLPRFGVMLVIVAAGFSSR
Ga0209171_105899841	3300025320	Iron-Sulfur Acid Spring	MKDTIVQGLQQAYLNLFHMIAEFLPRLVVMLVIILS
Ga0208849_11875242	3300025664	Arctic Peat Soil	MRDTILGGLEQAYGNLVRMIADFLPRFLVMLIIIVIGLL
Ga0209483_13891922	3300025862	Arctic Peat Soil	VRQTILQGVEQAYSNLGHMIADFLPRFLVMLIIIVLGFLVALVLKYI
Ga0207685_105791711	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MKDAIVQGLQQAYLNLFHMIAEFLPRLVVMLAIILSGLLVAYA
Ga0207699_110650961	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MRVMIVQGLQQAYQNLFHMFAEFLPRFVVMLVIIVSGLLVAYALRYVV
Ga0209838_10044621	3300026214	Soil	MKDTIVQGLQQAYYNLVHMIAEFLPRFVVMLVIILVGLLVAYVFRYG
Ga0209153_11105272	3300026312	Soil	MKEIILRGLQQAYENMVHMIAEFLPRFVVMFIILLFGWLLA
Ga0209802_11605411	3300026328	Soil	MKEMILRGLQQAYENMVHMIAEFLPRFVVMFIIMSFGWLVALLLKYLVRAILH
Ga0257170_10668462	3300026351	Soil	MKEMIVRGLQQAYENMVHMIAEFLPRFVVMFIIMLFGWLVALLL
Ga0257167_10824512	3300026376	Soil	MKEMIVRGLQQAYENMVHMIAEFLPRFVVMFIIMLFGWLVALLLK
Ga0209806_13438901	3300026529	Soil	MKEMILRGLQQAYENMVHMIAEFLPRFVVMFITMSFGWL
Ga0209731_10701902	3300027326	Forest Soil	MKDTILQGLEQAYSNFVHMIAEFLPHFLVMLIVIIFGLVVALILKFILR
Ga0208993_10988362	3300027480	Forest Soil	MRQTILQGLQQAYSNLAQMIADFLPRFLVMLIIIVLGLLVAFLLKYILRA
Ga0209735_11261001	3300027562	Forest Soil	MKEMILRGLQQAYENMVHMIAEFLPRFVVMFIIMLFGLLVALL
Ga0209331_10575811	3300027603	Forest Soil	MRVTIVQGLEQAYYNLVHMIAEFLPRFVVMLVIILVGLLAAYLLGHAFRAVLRLT
Ga0209736_10159483	3300027660	Forest Soil	MRQAILQGLEQAYTNLVHMIADFLPRFLVMLIIIVLGLLVAFLLKYILR
Ga0209693_105958421	3300027855	Soil	MRDTIVQALEQAYYNLVHMVGEFLPHFLVMLTIILIGLVVAFVLKY
Ga0209069_105827852	3300027915	Watersheds	VDPLQGLEQVYSKLVHMIAEFLPRFLVMLIIVLIGLLVAFVLRC
Ga0302226_103305032	3300028801	Palsa	MKDMIVQGLQQAYQNMVRMLAEFLPRLVVMLVIILVGVLVAYGLKYLLRAL
Ga0308309_113156661	3300028906	Soil	MRQTIVRALEEVYGNLVHMIAEFLPRFLVMLIIIVIGLLAAFVLKYILRGLLGLT
Ga0308309_115948072	3300028906	Soil	MRVTIVQGLQQAYYNLVHMIAEFLPRLVVMVVIILVGLLAAYLL
Ga0222749_104089501	3300029636	Soil	MKAMIVQGLEQAYQNLVHMLAEFLPRFVVMLVIIVAGLLIAYALKYVLR
Ga0316363_100232593	3300030659	Peatlands Soil	MRQTILQGLEQAYGNLVHMIADFLPRFLVMLIIIVLGLLVAFLLKYILRIV
Ga0075404_114235702	3300030842	Soil	MKEMIVRGLQQAYENMVHMIAEFLPRFVVMFIIML
Ga0170834_1138704783	3300031057	Forest Soil	MRVTIVQGLEQAYYNLVHMIAEFLPRFVVMVIIILVGLL
Ga0265760_103842072	3300031090	Soil	MRQTVLQGLEQAYGNLVRMIADFLPRFLVMLIIIALGLLVAFVL
Ga0170824_1282680721	3300031231	Forest Soil	MKEMILRGLQQAYENMVHMIAEFLPRFVVMFIIMLF
Ga0302324_1025390292	3300031236	Palsa	MRDTILRGLAQAYENLVHMIADFLPRFVVMLTIILAGLLIAFLLKSILRSI
Ga0265320_102384522	3300031240	Rhizosphere	MRETILRGLAQAYENLVHMIADFLPRFAVMLTIILAGLLIAFFLKSILR
Ga0170818_1100862401	3300031474	Forest Soil	MKEMILRGLQQAYENMVHMIAEFLPRFVVMFIIMSF
Ga0310686_1142708944	3300031708	Soil	MRQTILQGLEQVYGKLGHMIAEFLPRFLVMLIIILIGLLVALVFKYISRALLGLTKL
Ga0265314_106869432	3300031711	Rhizosphere	MRDTILRGLAQAYENLVHMIADFLPRFAVMLTIIL
Ga0307474_100838873	3300031718	Hardwood Forest Soil	MKDAIIHGLQQAYQNMADMIAQFLPRLVVMLAIVLAGVLVAYAF
Ga0307474_102178501	3300031718	Hardwood Forest Soil	MRQAILEGLEQVYSNLVHMVAEFLPRFLVMLIIIVI
Ga0307469_102574892	3300031720	Hardwood Forest Soil	MKEMILRGLQQAYENMVHMLAEFLPRFAVMFIIMA
Ga0307475_103133261	3300031754	Hardwood Forest Soil	MKEMIVRGLQQAYDNMVHMIAEFLPRFVVMFIIMAVGWLVALLLKYL
Ga0311301_129439711	3300032160	Peatlands Soil	MRQTILQALEEAYSNLVHMIADFLPRFLVMLVIIVLGLLVA
Ga0307471_1005436742	3300032180	Hardwood Forest Soil	MKEMILRGLQQAYENMVHMIAEFLPRFVVMFIIML
Ga0307472_1013942261	3300032205	Hardwood Forest Soil	MRQIILQGLVQVYSKLFHMIAEFLPRFLVMLIIVLIGLLVALVLRYILGGVLG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078953

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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