NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F078875

Metagenome Family F078875

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F078875
Family Type Metagenome
Number of Sequences 116
Average Sequence Length 45 residues
Representative Sequence VQVGSELPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCRELKI
Number of Associated Samples 12
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.86 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 8
AlphaFold2 3D model prediction Yes
3D model pTM-score0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.138 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut
(98.276 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal proximal gut
(100.000 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.17
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 116 Family Scaffolds
PF10158LOH1CR12 0.86
PF00078RVT_1 0.86
PF05225HTH_psq 0.86



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A99.14 %
All OrganismsrootAll Organisms0.86 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002185|JGI20163J26743_11515434All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera2843Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut98.28%
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Proctodeal Segment → Termite Gut1.72%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001544Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1Host-AssociatedOpen in IMG/M
3300002125Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4Host-AssociatedOpen in IMG/M
3300002175Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5Host-AssociatedOpen in IMG/M
3300002185Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1Host-AssociatedOpen in IMG/M
3300002462Microcerotermes parvus P4 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P4Host-AssociatedOpen in IMG/M
3300002469Microcerotermes parvus P3 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P3Host-AssociatedOpen in IMG/M
3300002508Microcerotermes parvus P1 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P1Host-AssociatedOpen in IMG/M
3300006226Microcerotermes parvus P3 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P3Host-AssociatedOpen in IMG/M
3300027891Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)Host-AssociatedOpen in IMG/M
3300027904Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027960Cubitermes ugandensis midgut segment microbial communities from Kakamega Forest, Kenya - Cu122M (SPAdes)Host-AssociatedOpen in IMG/M
3300027984Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5 (SPAdes)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20163J15578_1004264013300001544Termite GutAVTLCRWLCRVQVGSELPTCTRHGHRQLPEVVLTQFVLLNDKHDVLETCRELKI*
JGI20163J15578_1011494733300001544Termite GutQVGSELPTCTRHGHRQLPEVVLTQFVSPEDEHDVLETCRELKIKINT*
JGI20163J15578_1017160533300001544Termite GutSELPTCTRHGQRQLPEVILTQFFSPDDEHDMLETCGELKI*
JGI20163J15578_1024728513300001544Termite GutQVGSELPTCTRHGHRQLPEVVLTQFVSPVDEHDVLETCRELKI*
JGI20163J15578_1031582433300001544Termite GutPLVAVTLCGWPCHVQVGSELSSLPTCTRHGHRHRVKATRGHIVKSVSPDDEHDVLEMCRELKI*
JGI20163J15578_1033450623300001544Termite GutGSSLPTCTRHSHRQLPEVVLTQTVSPDDKHNVLETCREIKI*
JGI20163J15578_1053159113300001544Termite GutVQVGSELPTCTRHGHRQLPEVELTQFVSPDDEHDVLETCRELNI*
JGI20163J15578_1060178113300001544Termite GutVQVEISLPTCTRHGHRQLPEVVLTQFVSPDDEHNVLETCGELKK*
JGI20163J15578_1060201713300001544Termite GutLPTCTRHGHRQLPEVVLTQFVSPDDEHDVLEAYRELKI*
JGI20163J15578_1064715033300001544Termite GutVQVGSELPTCTRHGHRQLPEVVLTQFVSPGDKHDVLETCGELKI*
JGI20163J15578_1074007523300001544Termite GutRHGHRRRVTAPEVVLTTFVSPDDEHDVLETRRELKI*
JGI20163J15578_1074016723300001544Termite GutHRQLPEVVLTQFVSPDDEHDVLVTGRELKIYINT*
JGI20163J15578_1078581713300001544Termite GutVQVGSELPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCRELKI*
JGI20165J26630_1007333113300002125Termite GutSELSTCTRHGQRQLPEVILTQFFSPDDEHDMLETCGELKI*
JGI20165J26630_1009755423300002125Termite GutMTNVQVGSELPTCTRHGHRHRVTAPEVVLTQFVSPDDEHLMLETCRGE*
JGI20165J26630_1016765323300002125Termite GutRVQVGSELPTCTRHGHRQLPEVVLTQFVLLNDKHDVLETCRELKI*
JGI20165J26630_1031019113300002125Termite GutYRLQVGSSHSTCKRHGHRQLPEVVLTQFVSPDDEHDVFEKCRELRI*
JGI20166J26741_1014561813300002175Termite GutTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCRELKI*
JGI20166J26741_1065459353300002175Termite GutLPTCTRHGHRQLPEVVLTQFVSPDDEHDVLKTCKDLKI*
JGI20166J26741_1082931513300002175Termite GutELPTCTRHGHRQLPEVVLTQFVSPVDEHDVLETCRELKI*
JGI20166J26741_1145645713300002175Termite GutRWPCRVQVGSELPTCTRHGHRQLPEVVLTQFVSPEDEHDVLETCRELKIKINT*
JGI20166J26741_1145996713300002175Termite GutWPCRVQVGSELPTCTRHGHRHRVTAPEVVLTQFGSPDDEHDVLETCGELKI*
JGI20166J26741_1150434943300002175Termite GutVQVRSSVLTCTRHSHRQLPEVVLTQFVSPDDEHDVLETCRE
JGI20166J26741_1154296133300002175Termite GutSELPTCTRHGHRQLPEVVLTQFVSPDDEHDVLEAYRELKI*
JGI20166J26741_1154868013300002175Termite GutSEVSLPTCTRHGHRQLPEVVLTQFVSPDDEHDVFETCRELKI*
JGI20166J26741_1155367713300002175Termite GutLVAVGGRVVCRSEVNSSSLPTCKRHGHRQLPEVVLIKFVSPDDEHDVLETCKELKI*
JGI20166J26741_1155490913300002175Termite GutTCTRHGQRQLPEVILTQFFSPDDEHDMLETCGELKI*
JGI20166J26741_1159578723300002175Termite GutLPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCRELKI*
JGI20166J26741_1160507633300002175Termite GutTCTRHGHRQLPEVILTQFVSPDDEHDVLETCRELKIWIIT*
JGI20166J26741_1164076513300002175Termite GutVGISLPTCTRHGHRQLPEVVLTPFVSPDDEHDVLETCRELKIQINT*
JGI20166J26741_1164694313300002175Termite GutVGSDGPTCTRHGHRQLPEVVLTQFVSPGDEHDVLETCRDLKV*
JGI20166J26741_1167042613300002175Termite GutTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCRESKI*
JGI20166J26741_1194378223300002175Termite GutNCVNTTSGSCRWLCRVQVGSELPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCGELKK*
JGI20166J26741_1199408113300002175Termite GutLTSQLPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCRELKI*
JGI20166J26741_1211579213300002175Termite GutGSELPTCTRHGHRQLPEVLLTQFVSTDDKHDVLETCGELKI*
JGI20166J26741_1218379733300002175Termite GutLPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCIELKM*
JGI20163J26743_1035418713300002185Termite GutSVQVRSELPTCTRHGHRQLPDVVLTQFVSPDDEHDVLETCRELNI*
JGI20163J26743_1039395733300002185Termite GutQVFTTCIRHGHRQLPEVVLTQFVSPDDEHDVLETCRELKI*
JGI20163J26743_1039611723300002185Termite GutDNTEFQATKLPTCTRHVHRQLPEVILTQFVSPDDENDVLETCRELKI*
JGI20163J26743_1040731623300002185Termite GutVGSSLPTCTRHGHRQLPEVALTQFVSPDDQHDVLETCRYLKT*
JGI20163J26743_1040932013300002185Termite GutSELPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCGELKK*
JGI20163J26743_1048617613300002185Termite GutSELPTCTRHGHRQLPDFVLTQFVSPDEHDVLETCRELK*
JGI20163J26743_1066194923300002185Termite GutRAMGRVQVGSELPTCTRHGHRQLPKFVLTQFVSPDDDHDVVETCRELKV*
JGI20163J26743_1066546413300002185Termite GutLPTCKRHGHRQLPEVVLTQFVSPDDEHDVLETCSELKIKINT*
JGI20163J26743_1068390413300002185Termite GutVQVGSELPTCTRHGHRQLPEVVLTQLVSPDDEHDVLETCRELKI*
JGI20163J26743_1070103333300002185Termite GutRVQVGSELPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCRELKI*
JGI20163J26743_1072425913300002185Termite GutRVQVGSSLPTCKRHGHRQLPEVVLTQFVSPDDEHDVLETC*
JGI20163J26743_1073216823300002185Termite GutVGSEVPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCRELKI*
JGI20163J26743_1087418923300002185Termite GutPTCTRHGHRQLPEVVLTQFVSPDDEHDVLEAYRELKI*
JGI20163J26743_1103366613300002185Termite GutIQPLVVVTPCRSPCRVQVGSELPTCTRHGDRQLPEVVLTQFVSPDDEHDVLETCRELKI*
JGI20163J26743_1108981513300002185Termite GutSSLPTCTLHGHRQLPEVLLTQFVSPDDEHDVLETCRELKI*
JGI20163J26743_1109555423300002185Termite GutCTRHGHRQLPEVVLTQFVSPDDEYDVLETCRELKIIINT*
JGI20163J26743_1115126613300002185Termite GutSVQVGSELPTCTLHSRRYSVTATEVVLTQFVSPDDEHDVLEICRELKI*
JGI20163J26743_1117626433300002185Termite GutRVQVGSSLPTCTRHSHRQLPEVVLTQTVSPDDKHNVLETCREIKI*
JGI20163J26743_1129656343300002185Termite GutWLCRVQVGSELPTCTRHYHRHRVTAIEVVLTQFASPDDEHDVLETCRELKI*
JGI20163J26743_1141836833300002185Termite GutLVAVTLCRWLCRVQVGSELPTCTRHGHRQLPEVVLTQFVLLNDKHDVLETCRELKI*
JGI20163J26743_1142851253300002185Termite GutSSLPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETRRELKI*
JGI20163J26743_1151543473300002185Termite GutIQPLVAVTLCLWQCRVQVGSELPPAHDPPPEVVLTQFVSPDDEHDVLGTCRELKI*
JGI24702J35022_1086366813300002462Termite GutFPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETYRELKINT*
JGI24702J35022_1092586313300002462Termite GutTCTRHGHRQLPEVVLTQFVSPGDEHDVLETCRELKIKINT*
JGI24701J34945_1047937413300002469Termite GutLPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCRELKIQINT*
JGI24700J35501_1018578213300002508Termite GutCTRPGQRQLPEVVLTQFVSPDDEHDALETCRELKIKINT*
JGI24700J35501_1022475513300002508Termite GutTSCRVQVGSERRPTHSDRPEVVLTQFVSPEDEHDVLETCRELKINT*
JGI24700J35501_1027739923300002508Termite GutVGTTYTRHGHRQLPEVLLKQFVSPDDEQDVFETCRELKM*
JGI24700J35501_1038172123300002508Termite GutQVGTTYTRHGHRQLPEVVLTQFVSPDDEHHVFETCRELKI*
JGI24700J35501_1043578113300002508Termite GutWPCRVQVGSELHSLPTCTRHGHRQLSEVVSTQVVSPDDEHDVLETCRELNI*
JGI24700J35501_1047378023300002508Termite GutCHVQVGSSLPTYKRHGHRQLPEVVLTQFVSPDDEHDVLKTCRKLKININI*
JGI24700J35501_1053586623300002508Termite GutVGSELPTCTRHGHRHRVTAPEVVLIQFVSPDDEHDVLETCRELKIKIIT*
JGI24700J35501_1057596413300002508Termite GutGSELPTCTRHGHRQLPEVVLTQFVSTDDEHDVLETCRELKVNINT*
JGI24700J35501_1058675223300002508Termite GutRVQVGSSLPTCTRHGHRQLPEVVLTQFVSPDDEHNVLETCREVKIKINT*
JGI24700J35501_1059698523300002508Termite GutCRVQVGSELPTCTRHGHRHRVTVTGVVLTQFVSPDDEHDVLKTCRELKV*
JGI24700J35501_1063416323300002508Termite GutAGRTTCTRHGHRQLPEVVLTGFVSPDDEHDVLETCRGLKIKINT*
JGI24700J35501_1072196623300002508Termite GutSELPTCTRHGHRQLPDVVLTQFVSPHDEHDVLETYRELKMKINT*
JGI24700J35501_1081645413300002508Termite GutEVPTCTRYGHRQLPEVVLTQFVSPDDEYDVLETCRELKI*
JGI24700J35501_1084626213300002508Termite GutRVQVGSELAICTRPGHRQLPEVVLTQFVSPDDERDVLETCRELKIKINT*
JGI24700J35501_1085615923300002508Termite GutWPCRMQVGSELPTCTRHGHRQLPEVVLTQFVSANDEQMCSKHVELKIRINT*
JGI24700J35501_1089621513300002508Termite GutVCVQDESELPTCTRHGHRHRVTATEVVLTQFLSPDDEHNVLETCRELKTKINT*
Ga0099364_1019835343300006226Termite GutCRVQVGSELPTCTLHGHRQLPEVVLTQFVSPDDEHDVLETCRELKININA*
Ga0099364_1022491133300006226Termite GutTQHNHRQLPEVVLTQFFSPDDGHDMLETCRELKINM*
Ga0099364_1057208833300006226Termite GutLVAVTLCRWPCRVQDGSELPTCTRHGHRHRVTAPEVVLTQFVSPDDEHDEFEKCRELKMKINT*
Ga0099364_1057626313300006226Termite GutCTRHDHRQLPEVLLTQFVSPDEEHNVLETCIELKT*
Ga0099364_1078531323300006226Termite GutPLVAVTVCWWPSRVQVGSEVPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCRELKKINT
Ga0099364_1084663123300006226Termite GutGSSLATCTRHSHRQLPEVVLTQFVSPDDEHDVLETCKELKIKINI*
Ga0099364_1086337413300006226Termite GutRVQVGSSLPTCTRHGHRHRLRAPEVVLTQLVSPDDEHDVLEACRELKI*
Ga0099364_1086434013300006226Termite GutMFRAHRAHLPTCTRHGHRQLPEVVLTQFISPDDEHDVPETC
Ga0099364_1105636913300006226Termite GutSELPTCTRHDHRQLPEVALTQFVSPDDEHDVLQTCREL*
Ga0099364_1142663513300006226Termite GutTCTRHGHRQLPEVVLTQFVSPDDEHDVFETCRELKIKMNA*
Ga0099364_1151129123300006226Termite GutSTPHGRRQLPEVILTQFVSPDDGHDVLERCRELKIEINT*
Ga0209628_1013824233300027891Termite GutRVQVGSELPTCTRHGHRQLPEVVLTQFVLLNDKHDVLETCRELKI
Ga0209628_1015306213300027891Termite GutRVQVGSELPTCTRHGHRQLPEVVLTQFVSPDDEHDVLEAYRELKI
Ga0209628_1039865813300027891Termite GutVGSELSTCTRHGQRQLPEVILTQFFSPDDEHDMLETCGELKI
Ga0209628_1054749413300027891Termite GutCTRHGHRQLPEVVLTQFVSPDDEHDVLETCRESKI
Ga0209628_1070679313300027891Termite GutRVVCGSEVPTCTRHGHRQPPEVVLTQFVSPDDEHDVLETCRELKI
Ga0209628_1092949513300027891Termite GutVSIQTLVAVILCLWLCRVQVGSELPTCTRHSHRQLPEVVLTQFVSPDDEHDVLESCR
Ga0209737_1009087013300027904Termite GutCKRHGHRQLPEVVLTQFVSPDDEHDVLETCSELKIKINT
Ga0209737_1032270813300027904Termite GutRVQVGSELPTCTRHGHRQLPEVVLTQFVSPEDEHDVLETCRELKIKINT
Ga0209737_1039665613300027904Termite GutSELPTCTRHGHRQLPEVVLTQFVSPDDEHDVLEAYRELKI
Ga0209737_1042592023300027904Termite GutCRSEVNLSSLPTCTRHGHRQLPEVVLIKFVSPDDEHDVLETCKELKI
Ga0209737_1049195923300027904Termite GutQVGSSLPTCTPHGHRQLPEVVLTQFVSPDDEHDVFETCKELKIKISV
Ga0209737_1057072323300027904Termite GutLPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCGELKI
Ga0209737_1058387413300027904Termite GutVQVGSELPTCTRHGHRQLPEVVLTQFVSPDDERDVLETCIELKI
Ga0209737_1095902313300027904Termite GutGRKTCTRYGHRQLPEVVLTQFVSPDDEHDVLEAFRELKI
Ga0209737_1119379813300027904Termite GutRVQVGSELPTCTRHGHRQLPEAVLTQFVSPDDEHDVLETCRELKM
Ga0209737_1121488813300027904Termite GutELPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCTELKV
Ga0209737_1135905813300027904Termite GutSLPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETRRELKI
Ga0209737_1164866113300027904Termite GutQVASSLPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETRRELEIKKNT
Ga0209627_100299113300027960Termite GutVGISLPTCTRHGHRQLPEVVLTQFVSPDDEHDVLKTCKDLKI
Ga0209627_104907513300027960Termite GutVQVGSELPTCTRHGHRQLPEVVLTQFISPDDEHDVLEICRELKI
Ga0209627_107230513300027960Termite GutSELPTCTRHGHRQLPEVVLTQFVSPGDKHDVLETCGELKI
Ga0209629_1006451113300027984Termite GutVSIQTLVAVTLCRWPCRVQVGSELPTCTRHGHRQLAEVVLTQFVPPDDEHDVLETCRELKKI
Ga0209629_1011358323300027984Termite GutVSVQPLVAVTLCRWPCRVQVGSELPTCTRHGYRQVPEFVLTRFVSPDDEHDVLETCRELK
Ga0209629_1012428713300027984Termite GutCRVQVGSGLPTCTRHGHRQLPEVVLTQFVSPDDEHDVLETCRELKI
Ga0209629_1016656123300027984Termite GutCTRHGHRQLPEVVLTQFVSPDDEHDVLKTCKDLKI
Ga0209629_1056881813300027984Termite GutRKTCTRYGHRQLPEVVLTQFVSPDDEHDVLEAFRELKI
Ga0209629_1068466113300027984Termite GutMQPLAAVTLCRWLCRVQVGSELPTCTRHGHRQLPEVVLTQFFSPDDEHDVIETCRELKI
Ga0209629_1085577213300027984Termite GutCTRHGHRQLPEVVLTQFVSPDDEHDVLETCRELKI


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