Metagenome / Metatranscriptome Family F078844

Overview

Basic Information

• Family ID: F078844
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 116
• Average Sequence Length: 40 residues
• Representative Sequence: MGKKDAKVRMSLQTLRVLEAFLENPTEQLSGADVHQRCRIA
• Number of Associated Samples: 105
• Number of Associated Scaffolds: 116

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 26.72 %
• % of genes near scaffold ends (potentially truncated): 98.28 %
• % of genes from short scaffolds (< 2000 bps): 93.10 %
• Associated GOLD sequencing projects: 101
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (76.724 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.517 % of family members)
• Environment Ontology (ENVO): Unclassified (18.966 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (37.931 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 28.99%
  β-sheet: 0.00%
  Coil/Unstructured: 71.01%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF02472	ExbD	18.10
PF00583	Acetyltransf_1	4.31
PF01464	SLT	4.31
PF00072	Response_reg	3.45
PF04972	BON	1.72
PF11295	DUF3096	1.72
PF04389	Peptidase_M28	1.72
PF00248	Aldo_ket_red	1.72
PF01545	Cation_efflux	1.72
PF12840	HTH_20	0.86

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0848	Biopolymer transport protein ExbD	Intracellular trafficking, secretion, and vesicular transport [U]	18.10
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	1.72
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	1.72
COG1352	Methylase of chemotaxis methyl-accepting proteins	Signal transduction mechanisms [T]	1.72
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	1.72
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.86
COG4539	2-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids)	Lipid transport and metabolism [I]	0.86
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.86
COG3497	Phage tail sheath protein FI	Mobilome: prophages, transposons [X]	0.86
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.86

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.72 %
Unclassified	root	N/A	23.28 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.72 %
Unclassified	root	N/A	23.28 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.72 %
Unclassified	root	N/A	23.28 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	38.79 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.86 %
Unclassified	root	N/A	23.28 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.59 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.59 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.72 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	13.79 %
Holophagae	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae	0.86 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.86 %
Unclassified	root	N/A	23.28 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.86 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.86 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.59 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.72 %
Holophagales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.72 %
Spirochaetales	order	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales	0.86 %
Unclassified	root	N/A	23.28 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	6.90 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.86 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Boseaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae	0.86 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.86 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	6.90 %
Holophagaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae	0.86 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.86 %
Spirochaetaceae	family	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae	0.86 %
Unclassified	root	N/A	23.28 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	1.72 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	0.86 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Bosea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea	0.86 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.72 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	6.90 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.86 %
Terracidiphilus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus	0.86 %
Unclassified	root	N/A	23.28 %
unclassified Holophagaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → unclassified Holophagaceae	0.86 %
unclassified Spirochaetaceae	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → unclassified Spirochaetaceae	0.86 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.86 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.72 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	6.90 %
Holophagaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → unclassified Holophagaceae → Holophagaceae bacterium	0.86 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.86 %
Spirochaetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → unclassified Spirochaetaceae → Spirochaetaceae bacterium	0.86 %
Terracidiphilus gabretensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus → Terracidiphilus gabretensis	0.86 %
Unclassified	root	N/A	23.28 %
unclassified Bosea	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → unclassified Bosea	0.86 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.86 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Bosea sp. 12-68-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → unclassified Bosea → Bosea sp. 12-68-7	0.86 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.72 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	6.90 %
Holophagaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → unclassified Holophagaceae → Holophagaceae bacterium	0.86 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.86 %
Spirochaetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → unclassified Spirochaetaceae → Spirochaetaceae bacterium	0.86 %
Terracidiphilus gabretensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus → Terracidiphilus gabretensis	0.86 %
Unclassified	root	N/A	23.28 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.86 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300002245|JGIcombinedJ26739_101546096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	560
3300004082|Ga0062384_100404040	All Organisms → cellular organisms → Bacteria	881
3300004635|Ga0062388_102598753	All Organisms → cellular organisms → Bacteria	532
3300005535|Ga0070684_100745137	Not Available	914
3300005538|Ga0070731_10341054	Not Available	995
3300005538|Ga0070731_10993771	All Organisms → cellular organisms → Bacteria	555
3300005563|Ga0068855_100504399	Not Available	1314
3300005610|Ga0070763_10108945	All Organisms → cellular organisms → Bacteria	1406
3300005993|Ga0080027_10356640	Not Available	586
3300006041|Ga0075023_100262050	All Organisms → cellular organisms → Bacteria	696

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.38%
Host-Associated	Host-Associated	8.62%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	12.07%
Arthropoda	Host-Associated → Arthropoda	0.86%
Plants	Host-Associated → Plants	7.76%
Terrestrial	Environmental → Terrestrial	79.31%

Category

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Arthropoda → Digestive System	0.86%
Freshwater	Environmental → Aquatic → Freshwater	6.03%
Peat	Environmental → Terrestrial → Peat	21.55%
Peat Moss	Host-Associated → Plants → Peat Moss	0.86%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.17%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.86%
Roots	Host-Associated → Plants → Roots	0.86%
Sediment	Environmental → Aquatic → Sediment	6.03%
Soil	Environmental → Terrestrial → Soil	56.03%

Type

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	0.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.86%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.86%
Loam	Environmental → Terrestrial → Soil → Loam	11.21%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	21.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.31%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.03%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.03%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.72%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	21.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.52%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.31%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.72%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.86%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.72%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.72%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.59%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.72%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.86%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	14.66%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.86%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.86%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.52%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.72%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.59%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.72%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.62%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.03%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1015460962	3300002245	Forest Soil	MGKKERDVRMSLQTLKVLEAFLENPTEQRSGADVHQRCGI
Ga0062384_1004040401	3300004082	Bog Forest Soil	MGKQVGNVRMSLQTLRVLEIFLENPAERLSGAEVHQRCGIASGTLY
Ga0062388_1025987532	3300004635	Bog Forest Soil	MGKKDTNVRMSLQTLRVLEVFLENPTEQFAGAQVHQRCGI
Ga0070684_1007451371	3300005535	Corn Rhizosphere	MGKQERSVRMSLQTLRTLEAFLESPTDELSGSDVQKRSGL
Ga0070731_103410543	3300005538	Surface Soil	MGKDRDVRISLQTLRVLEAFLESPTDQLSGADVQK
Ga0070731_109937711	3300005538	Surface Soil	MGRKDTRVRMSLQTLKVLEAFLENPTERLSGAEVHQRCGIASG
Ga0068855_1005043993	3300005563	Corn Rhizosphere	MGKQERSVRMSLQTLRTLEAFLESPTDELSGSDVQKRSGLASG
Ga0070763_101089454	3300005610	Soil	MGQKDREVRMSLQTLRVLETFLDNLTEQLAGAEVHQRCG
Ga0080027_103566401	3300005993	Prmafrost Soil	MRMSLQTMRVLELFLESPMEQLSGADVHQRCGIASGTLYP
Ga0075023_1002620503	3300006041	Watersheds	MGKQDRDVRMSLQTLRVLEAFLEDPTGELAGADVQKL
Ga0075028_1001039333	3300006050	Watersheds	MGKPDREVRISLQTLRVLEVFLDNPTDPLSGADVQKRSRLASGTLYP
Ga0075028_1004296472	3300006050	Watersheds	MSLQTLKVLEAFLENPTDQLSGAEVHQRCHLASGTLYPILL
Ga0075019_111281091	3300006086	Watersheds	MGSPERNVRMSLQTLKVLEVFLENPAAQLSGADVHQ
Ga0075030_1009986072	3300006162	Watersheds	MGKKDAKVRMSLQTLRVLEAFLENPTEQLSGADVHQRCRIA
Ga0075030_1010978752	3300006162	Watersheds	MSLQTLHVLEAFLENPSDQLSGADVHQRCGIASGTLYP
Ga0097621_1022120811	3300006237	Miscanthus Rhizosphere	MGKPDRQVRMSLQTLRVLEIFLENPTEQLSGAEVHQRCGI
Ga0116129_100123814	3300009633	Peatland	MGKKDGNVRMSLQTLRVLEVFLENPTERFAGAEVHQRCGMAWLIG*
Ga0116226_111111132	3300009787	Host-Associated	MGKREQKVRMSLQTLRVLETFLENPTEQLSGADVHQRCGI
Ga0123355_120671002	3300009826	Termite Gut	MGKKERDVRISLQTLHVLEAFLENPGEQLAGADVQRRTGLA
Ga0074045_103929002	3300010341	Bog Forest Soil	MGKKDTTVRMSLQTLRVLEAFLENPSEQLAGAEVHQRCGIASGTL
Ga0074044_102376551	3300010343	Bog Forest Soil	MGKEERNVRMSLQTLRVLEAFLESPTASLSGADVHQQCGI
Ga0074044_110093512	3300010343	Bog Forest Soil	MGKEDRNVRMSLQTLKVLEAFLESPMSQLSGADIHQGN
Ga0126370_105364773	3300010358	Tropical Forest Soil	MGKRDRDVRMSLQTLRVLDAFLENPSDELAGADVQKRSGL
Ga0134125_125780661	3300010371	Terrestrial Soil	MSLQTLKVLDAFLSDPTDELSGADVQKRSGIASGTLYPI
Ga0105239_112017391	3300010375	Corn Rhizosphere	MSLQTLRTLEAFLESPTDELSGSDVQKRSGLASGTLYPI
Ga0126350_122523031	3300010880	Boreal Forest Soil	MSLQTLRALESFLENPTDELSGADVQKRSGLASGTLYPILL
Ga0137360_108115732	3300012361	Vadose Zone Soil	MGKRDREVRMSLQTLRVLEAFLEDPTDELSGADVYKRSGIAS
Ga0137358_107201332	3300012582	Vadose Zone Soil	MGKQSRDVRMSLQTLRVLEAFLENPTNELSGADVHKRSSLASGTL
Ga0137397_103371541	3300012685	Vadose Zone Soil	MGKKDTNVRMSLQTLRVLEAFLENPTVQLAGAEVHQ
Ga0137396_106321391	3300012918	Vadose Zone Soil	MSLQTLRVLEAFLENPTDELSGADVQKRGGLASGTLYPILL
Ga0137394_103414231	3300012922	Vadose Zone Soil	MSLQTLRVLEAFLEDPTDQLSGADVHQRCGIASGTLYPIL
Ga0137413_100327431	3300012924	Vadose Zone Soil	MGKKDANVRMSLQTLRVLEVFLENPTERLAGADVHQRCGIASGTL
Ga0137416_109086792	3300012927	Vadose Zone Soil	MSLQTLRVLEAFLENPSVQLAGAEVHQRCGIASGTLYPILLR
Ga0137404_120146912	3300012929	Vadose Zone Soil	MGKQSRDVRMSLQTLRVLEAFLENPTNELSGADVHK
Ga0181522_105427032	3300014657	Bog	MGKQDRDVRMSLQTLKVLEAFLEEPMTQLSGADIHQRSRIASGTLY
Ga0181519_105563462	3300014658	Bog	MSLQTLQVLEAFLENPTVQLAGADVHQRCGIASGTLYP
Ga0157376_115442792	3300014969	Miscanthus Rhizosphere	MGKQERSVRMSLQTLRTLEAFLESPTDELSGSDVQKRS
Ga0137409_102930743	3300015245	Vadose Zone Soil	MGKQDRDVRMSLQTLRTLESFLENPTDELSGADVQKRSGLA
Ga0187779_107893243	3300017959	Tropical Peatland	MSFQTLKVLEAFLENPGEELSGADVHKRSGIASGTL
Ga0187890_104846411	3300018044	Peatland	MGRKDTKVRMSLQTLRVLEAFLENPTLQLAGADVHQR
Ga0187772_114359762	3300018085	Tropical Peatland	MGRTDRPVRMSLQSLRVLEAFLESPAEELSGADVHK
Ga0210403_100605582	3300020580	Soil	MGKKDGNVRMSLQTLRVLEVFLENPTERFAGAEVHQRCGIASGTLYPI
Ga0210399_103954731	3300020581	Soil	MRMSLQTLRVLEVFLENPTEQLSGAEVHQRCGLASGTL
Ga0210396_114758451	3300021180	Soil	MGKESRDVRMSLQTLKVLEAFLENPADQLSGAEVRQRCGLASGTLY
Ga0210388_109789692	3300021181	Soil	MGRKNRDVRISLQTLRVLEAFLDHPAESLSGSDVQ
Ga0213872_103148781	3300021361	Rhizosphere	MGKMDRDVRMSLQTLRVLDAFLASPAEELAGADVHKRSGLASGARY
Ga0213882_103439962	3300021362	Exposed Rock	MGKPDRPVRMSLQTLRVLDAFLENPAHELAGADVQ
Ga0210389_109430121	3300021404	Soil	MGKESRDVRMSLQTLKVLEAFLENPADQLSGAEVR
Ga0210386_111755182	3300021406	Soil	MGKKETSVRMSLQTLRVLEAFLENPTEQLAGAEVHQR
Ga0210394_103922904	3300021420	Soil	MGKKDRDVRISLQTLKVLEVFLENPTEQLSGADVHLHCG
Ga0210391_112485751	3300021433	Soil	MGKKDAGVRMSLQTLRVLEVFLENPTEQLAGADLHQ
Ga0210409_102703783	3300021559	Soil	MGRQDRDVRLSLQTLKVLEAFLENPTDQLSGADVQKRS
Ga0224557_13002051	3300023101	Soil	MGKKDTDVRMSLQTLRVLEAFLENPTAQLAGAEVHQRCG
Ga0247784_10024027	3300023270	Plant Litter	MVKKDRDVRMSLQTMRVLEAFLENPTDELAGADVQKRSGLASGT
Ga0208193_10091774	3300025463	Peatland	MGKKDGNVRMSLQTLRVLEVFLENPTERFAGAEVHQRCGMAWLIG
Ga0207685_104744111	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MGKRDRDVRMSLQTLRVLDAFLENPADELAGADVQKRSGLASGTLY
Ga0207684_108847871	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MGKDRNVRMSLQTLHVLEAFLENPTDELSGADVQKRSNLA
Ga0207671_107565312	3300025914	Corn Rhizosphere	MGKQERSVRMSLQTLRTLEAFLESPTDELSGSDVQK
Ga0207671_114517172	3300025914	Corn Rhizosphere	MGKQERSVRMSLQTLRTLEAFLESPTDELSGSDVQKRSG
Ga0207700_104237781	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MGKRDRDVRMSLQTLRVLDAFLENPADELAGADVQK
Ga0207700_108030481	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MGNPDRQVRMSLQTLRVLEIFLENPTQQLSGAEVHQRCG
Ga0207664_103667153	3300025929	Agricultural Soil	MGKGPRDVRMSLQTLKVLDAFLSEPTDELSGADVQ
Ga0209849_10896021	3300026215	Soil	MGKKDTNVRMSLQTLRVLEAFLENPTVQLAGAEVHQRCGI
Ga0179593_11184231	3300026555	Vadose Zone Soil	SLQTLRVLEAFLENPTDQLAGADVHKRSGLASGTL
Ga0209733_11061122	3300027591	Forest Soil	MGKKDGNVRMSLQTLRVLELFLESPTEQLSGAEVHQRCGIASGTL
Ga0209530_10848271	3300027692	Forest Soil	MGKEDRNPRMSLQTLRVLEVFLENPTAQLSGADVHESCG
Ga0209579_104785071	3300027869	Surface Soil	MGKDRDVRISLQTLRVLEAFLESPTDQLSGADVQKRSG
Ga0209169_104209442	3300027879	Soil	MGKKDTDVRMSLQTLRVLEVFLENPTVQLAGAEVHQHCGIASGTLYP
Ga0209275_102892383	3300027884	Soil	MGKTTGNVRMSLQTLRVLESFLENPLEQLSGADVHQRC
Ga0209006_106699913	3300027908	Forest Soil	MGKTTGNVRMSLQTLRVLESFLENPLEQLSGADVHQ
Ga0209698_109049641	3300027911	Watersheds	MGKKDAKVRMSLQTLRVLEAFLENPTEQLSGADVHQRCRIAS
Ga0302232_100870214	3300028789	Palsa	MSKRDRDVRMSLQTLKVLEAFLENPADELAGADVLQRCRLASGT
Ga0302222_100834161	3300028798	Palsa	MGKTATRVRMSLQTLRVLEIFLENPTEQLAGAEVHQ
Ga0302235_102909801	3300028877	Palsa	MGKTTDNVRMSLQTLRVLEAFLDNPVEQLSGSDVHQ
Ga0311358_105808363	3300029915	Bog	MGTRNPDVRMSLQTLRVLGAFLDNPTESLSGADVHRRSGLATGTLY
Ga0311352_110474911	3300029944	Palsa	MGKGIRDVRLSLQTLHVLEAFLENPTDQLSGADVQKRSRLAS
Ga0311371_124396302	3300029951	Palsa	MGKQDTNVRMSLQTLRVLEAFLEDPTGQLAGAELHQR
Ga0311334_106819961	3300029987	Fen	MGKQDRTVRMSLQTLRTLESFLENPNDELSGSDVQKRSGLASGT
Ga0311336_109231093	3300029990	Fen	MGKQDRDVRMSLQTLRVLEAFLEDPAGELAGADVQKLGHLASGTL
Ga0311339_112570401	3300029999	Palsa	MGTQDGNVRMSLQTLKVLEAFLENPGDALSGADVMQRCQVAS
Ga0302305_12495081	3300030046	Palsa	MGKQDRDVRMSLQTLRVLEAFLENPTDELSGADVQKRGRLAS
Ga0311353_107990743	3300030399	Palsa	MGKTTGNVRMSLQTLRVLESFLENPLEQLSGADVHQRCRIA
Ga0311370_111733571	3300030503	Palsa	MAKQIREVRMSLQTLKVLEAFLENPTDQMSGSEVH
Ga0311370_120720121	3300030503	Palsa	MGKQDTNVRMSLQTLRVLEAFLEDPTGQLAGAELHQRCGIAS
Ga0311372_121293031	3300030520	Palsa	MAKKDREVRMSLQTLQVLEAFLENPTEQLSGAEVHRRCGLASGTLY
Ga0307482_13057332	3300030730	Hardwood Forest Soil	MGKPIKDVRISLQTLRVLDAFLENPTADLAGSDVQKRGKLASGTLYP
Ga0265753_10823291	3300030862	Soil	MGKEDREVRMSLQTLKVLEAFLENPTDQLSGAEVHQRCK
Ga0311366_105408313	3300030943	Fen	MGTQDKDVRMSLQTLRVLEAFLENPTDALAGADVA
Ga0170834_1040468452	3300031057	Forest Soil	MGQKDTNVRMSLQTLRVLEVFLENPTELLAGADVHQ
Ga0170824_1108646881	3300031231	Forest Soil	MGKKDTTVRMSLQTLRVLEAFLENPTEQLAGAEVHQRC
Ga0302307_104586992	3300031233	Palsa	MGKKDTRVRMSLQTLRVLEAFLENPTQQLAGAEVHQRCGIASGTLYP
Ga0302307_107215511	3300031233	Palsa	MGKKDTNVRMSLQTLRVLESFLENPTVQLAGAEVHQRCG
Ga0302325_130887101	3300031234	Palsa	MGTQDGNVRMSLQTLKVLEAFLENPGDALSGADVMQRCQVASGTL
Ga0302324_1007345911	3300031236	Palsa	MGTDDRNVRMSLQTLKVLEAFLADPTRSLSGADVHEQSKIASGTLYP
Ga0302324_1010742292	3300031236	Palsa	MGKQERNVRMSLQTLRVLEAFLENPTEQLSGAEVHQRCGIASGTLYP
Ga0265328_101807832	3300031239	Rhizosphere	MGKPDREMRMSLQTLRVLEAFLAGPSEELAGADVARRGHI
Ga0302320_101655121	3300031524	Bog	MGKENRDVRMSLQTLKVLEAFLENPTDQLSGADVM
Ga0302326_117419781	3300031525	Palsa	MGTQDGNVRMSLQTLKVLEAFLENPGDALSGADVMQRCQVASG
Ga0318542_104921751	3300031668	Soil	MGSRDQVRISLQTLQVLEAFLENPAGELSGADVHRRSGIASGTL
Ga0307373_103626722	3300031672	Soil	MGRRDGDIRISLQTLRALEAFLENPSEELSGADVQKR
Ga0318574_102862901	3300031680	Soil	MVSRDVRMSLQTLKVLEAFLADPTDELSGADIHRRSGIASGTLY
Ga0318574_104788761	3300031680	Soil	MGDRDGNVRLSFQTLKVLEAFFQNPAGELSGADVHKRTEIASG
Ga0318574_108839722	3300031680	Soil	MGKRDRDVRMSLQTLRVLDAFLENPADELAGADVQKRSGL
Ga0310686_1021690131	3300031708	Soil	MGKDREVRMSLQTLRVLEAFLENPMGELAGADVQKRGQQIGRAHV
Ga0318537_100229373	3300031763	Soil	MVSRDVRMSLQTLKVLEAFLADPTDELSGADIHRRSGIASGT
Ga0311367_104485653	3300031918	Fen	MGKQDRDVRMSLQTLRVLEAFLEDPAGELAGADVQKLGHLASG
Ga0310916_106386592	3300031942	Soil	MVSRDVRMSLQTLKVLEAFLADPTDELSGADIHRRSGIA
Ga0310909_111911412	3300031947	Soil	MVSRDVRMSLQTLKVLEAFLADPTDELSGADIHRRSG
Ga0307479_118889801	3300031962	Hardwood Forest Soil	MSLQTLRVLDAFLENPTDELAGADVQKRSGLASGTLY
Ga0318562_100721502	3300032008	Soil	MGDRGGNVRLSFQTLKVLEAFLEKPTGELSGADVHKRTEIASG
Ga0318558_103778061	3300032044	Soil	MVSRDVRMSLQTLKVLEAFLADPTDELSGADIHRRSGIASGTL
Ga0335082_108814251	3300032782	Soil	MGTDRPVRMSLQTLRVLEAFLENPRGEFAGSDLQKR
Ga0335077_104403211	3300033158	Soil	MGRQDRDVRISLQTLKVLEAFLENPTEEISGADVHRRSG
Ga0334840_112218_613_744	3300033824	Soil	MGKKDTKVRMSLQTLRVLEAFLENPTVQLAGADVHQRCGIASGT
Ga0370515_0093579_1149_1298	3300034163	Untreated Peat Soil	MGKQAHDVRMSLQTLKVLEPFLESPADEFSGADLLQRFRLASGTLYPILL
Ga0370492_0141974_832_981	3300034282	Untreated Peat Soil	MGKKDKDTPVRMSLQTLRVLEAFLENPTAQLAGAEVHQRCGIASGTLYPI