Metagenome / Metatranscriptome Family F078775

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078775
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	66 residues
Representative Sequence	IYTIEKLMARPGIDAKGPGYRPNRPLAEAKIFNKAEQKECAFPSVVEERHPAVLYESMIRRRG
Number of Associated Samples	99
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.45 %
% of genes near scaffold ends (potentially truncated)	95.69 %
% of genes from short scaffolds (< 2000 bps)	92.24 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.517 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (12.069 % of family members)
Environment Ontology (ENVO)	Unclassified (20.690 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.552 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.68% β-sheet: 0.00% Coil/Unstructured: 81.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF03706	LPG_synthase_TM	11.21
PF00072	Response_reg	4.31
PF02803	Thiolase_C	3.45
PF07690	MFS_1	3.45
PF13400	Tad	2.59
PF00069	Pkinase	2.59
PF00483	NTP_transferase	2.59
PF12838	Fer4_7	1.72
PF06808	DctM	1.72
PF13594	Obsolete Pfam Family	1.72
PF01738	DLH	1.72
PF02769	AIRS_C	0.86
PF01797	Y1_Tnp	0.86
PF00132	Hexapep	0.86
PF04321	RmlD_sub_bind	0.86
PF08241	Methyltransf_11	0.86
PF03972	MmgE_PrpD	0.86
PF00037	Fer4	0.86
PF09720	Unstab_antitox	0.86
PF01479	S4	0.86
PF02656	DUF202	0.86
PF00248	Aldo_ket_red	0.86
PF07969	Amidohydro_3	0.86
PF04226	Transgly_assoc	0.86
PF13247	Fer4_11	0.86
PF16658	RF3_C	0.86
PF03167	UDG	0.86
PF14437	MafB19-deam	0.86
PF03795	YCII	0.86
PF13519	VWA_2	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	11.21
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	10.34
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	3.45
COG0451	Nucleoside-diphosphate-sugar epimerase	Cell wall/membrane/envelope biogenesis [M]	1.72
COG0702	Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains	General function prediction only [R]	1.72
COG1086	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC	Cell wall/membrane/envelope biogenesis [M]	1.72
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.86
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.86
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.86
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.86
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.86
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.86
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.86
COG1091	dTDP-4-dehydrorhamnose reductase	Cell wall/membrane/envelope biogenesis [M]	0.86
COG1090	NAD dependent epimerase/dehydratase family enzyme	General function prediction only [R]	0.86
COG1089	GDP-D-mannose dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.86
COG1088	dTDP-D-glucose 4,6-dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.86
COG1087	UDP-glucose 4-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.86
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.52 %
Unclassified	root	N/A	9.48 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.52 %
Unclassified	root	N/A	9.48 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.52 %
Unclassified	root	N/A	9.48 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	68.10 %
Unclassified	root	N/A	9.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.45 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.72 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.72 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.86 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.48 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	8.62 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.72 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.72 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.86 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.86 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.86 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.62 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1.72 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.72 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.86 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.62 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	1.72 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	0.86 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.86 %
Pseudanabaenales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales	0.86 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.62 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	1.72 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.86 %
Leptolyngbyaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae	0.86 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.86 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.62 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	1.72 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.86 %
Leptolyngbya	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya	0.86 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.86 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.62 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1.72 %
Leptolyngbya ohadii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → Leptolyngbya ohadii	0.86 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.86 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.86 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY01A89U0	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300002124\|C687J26631_10119953	All Organisms → cellular organisms → Bacteria → Acidobacteria	887	Open in IMG/M
3300004157\|Ga0062590_103009677	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300004631\|Ga0058899_11736750	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300004803\|Ga0058862_10017807	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300005183\|Ga0068993_10265425	All Organisms → cellular organisms → Bacteria → Acidobacteria	613	Open in IMG/M
3300005183\|Ga0068993_10320729	All Organisms → cellular organisms → Bacteria → Acidobacteria	563	Open in IMG/M
3300005184\|Ga0066671_10454256	Not Available	822	Open in IMG/M
3300005186\|Ga0066676_10077972	All Organisms → cellular organisms → Bacteria → Acidobacteria	1961	Open in IMG/M
3300005329\|Ga0070683_100198710	All Organisms → cellular organisms → Bacteria	1904	Open in IMG/M
3300005332\|Ga0066388_101321717	All Organisms → cellular organisms → Bacteria → Acidobacteria	1245	Open in IMG/M
3300005332\|Ga0066388_101687434	All Organisms → cellular organisms → Bacteria → Acidobacteria	1120	Open in IMG/M
3300005332\|Ga0066388_106436800	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300005340\|Ga0070689_102183708	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	507	Open in IMG/M
3300005343\|Ga0070687_100060356	Not Available	2000	Open in IMG/M
3300005364\|Ga0070673_100007684	All Organisms → cellular organisms → Bacteria → Acidobacteria	7134	Open in IMG/M
3300005365\|Ga0070688_100845841	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300005445\|Ga0070708_100923469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → Leptolyngbya ohadii	819	Open in IMG/M
3300005445\|Ga0070708_102111598	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300005446\|Ga0066686_10432445	All Organisms → cellular organisms → Bacteria → Acidobacteria	899	Open in IMG/M
3300005450\|Ga0066682_10092110	All Organisms → cellular organisms → Bacteria → Acidobacteria	1894	Open in IMG/M
3300005450\|Ga0066682_10144253	All Organisms → cellular organisms → Bacteria → Acidobacteria	1513	Open in IMG/M
3300005451\|Ga0066681_10371146	All Organisms → cellular organisms → Bacteria → Acidobacteria	879	Open in IMG/M
3300005459\|Ga0068867_100440478	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300005466\|Ga0070685_10008729	All Organisms → cellular organisms → Bacteria → Acidobacteria	5219	Open in IMG/M
3300005466\|Ga0070685_10194392	All Organisms → cellular organisms → Bacteria → Acidobacteria	1315	Open in IMG/M
3300005549\|Ga0070704_101486503	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300005553\|Ga0066695_10755817	All Organisms → cellular organisms → Bacteria → Acidobacteria	564	Open in IMG/M
3300005555\|Ga0066692_10510178	Not Available	764	Open in IMG/M
3300005561\|Ga0066699_10710856	All Organisms → cellular organisms → Bacteria → Acidobacteria	715	Open in IMG/M
3300005615\|Ga0070702_100130329	All Organisms → cellular organisms → Bacteria → Acidobacteria	1587	Open in IMG/M
3300005764\|Ga0066903_106241749	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300005841\|Ga0068863_102285868	Not Available	550	Open in IMG/M
3300006358\|Ga0068871_100691768	All Organisms → cellular organisms → Bacteria → Acidobacteria	934	Open in IMG/M
3300006797\|Ga0066659_10985725	All Organisms → cellular organisms → Bacteria → Acidobacteria	704	Open in IMG/M
3300006800\|Ga0066660_11659193	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300007004\|Ga0079218_10681014	All Organisms → cellular organisms → Bacteria → Acidobacteria	960	Open in IMG/M
3300007004\|Ga0079218_11211701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784	Open in IMG/M
3300007255\|Ga0099791_10430371	Not Available	637	Open in IMG/M
3300009012\|Ga0066710_100839288	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1411	Open in IMG/M
3300009012\|Ga0066710_102280417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	788	Open in IMG/M
3300009094\|Ga0111539_11529832	All Organisms → cellular organisms → Bacteria → Acidobacteria	774	Open in IMG/M
3300009098\|Ga0105245_12858777	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300009147\|Ga0114129_10109702	All Organisms → cellular organisms → Bacteria	3809	Open in IMG/M
3300009156\|Ga0111538_10959977	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300009156\|Ga0111538_13701349	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300009545\|Ga0105237_12354550	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300009678\|Ga0105252_10276456	All Organisms → cellular organisms → Bacteria → Acidobacteria	742	Open in IMG/M
3300009792\|Ga0126374_10381217	All Organisms → cellular organisms → Bacteria → Acidobacteria	978	Open in IMG/M
3300010046\|Ga0126384_10039714	All Organisms → cellular organisms → Bacteria	3181	Open in IMG/M
3300010046\|Ga0126384_11522163	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300010047\|Ga0126382_11558737	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300010128\|Ga0127486_1022338	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300010359\|Ga0126376_12283169	All Organisms → cellular organisms → Bacteria → Proteobacteria	587	Open in IMG/M
3300010362\|Ga0126377_13102929	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300010398\|Ga0126383_10130137	All Organisms → cellular organisms → Bacteria	2312	Open in IMG/M
3300010398\|Ga0126383_11007881	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	921	Open in IMG/M
3300010398\|Ga0126383_11311370	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	814	Open in IMG/M
3300010400\|Ga0134122_11862727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	635	Open in IMG/M
3300010401\|Ga0134121_12705803	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300010403\|Ga0134123_11637091	All Organisms → cellular organisms → Bacteria → Acidobacteria	693	Open in IMG/M
3300011332\|Ga0126317_10690840	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	776	Open in IMG/M
3300012173\|Ga0137327_1117759	All Organisms → cellular organisms → Bacteria → Acidobacteria	588	Open in IMG/M
3300012203\|Ga0137399_10042691	All Organisms → cellular organisms → Bacteria	3234	Open in IMG/M
3300012207\|Ga0137381_11765840	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300012356\|Ga0137371_10255643	All Organisms → cellular organisms → Bacteria → Acidobacteria	1367	Open in IMG/M
3300012362\|Ga0137361_11792614	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300012910\|Ga0157308_10111832	All Organisms → cellular organisms → Bacteria → Acidobacteria	822	Open in IMG/M
3300012971\|Ga0126369_12408197	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300012971\|Ga0126369_12527506	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300013297\|Ga0157378_13131994	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300014259\|Ga0075311_1074817	All Organisms → cellular organisms → Bacteria → Acidobacteria	692	Open in IMG/M
3300014325\|Ga0163163_11402295	All Organisms → cellular organisms → Bacteria → Acidobacteria	760	Open in IMG/M
3300014326\|Ga0157380_12149878	Not Available	621	Open in IMG/M
3300014969\|Ga0157376_10491162	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1205	Open in IMG/M
3300014969\|Ga0157376_12766941	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300015372\|Ga0132256_101828225	All Organisms → cellular organisms → Bacteria → Acidobacteria	715	Open in IMG/M
3300015372\|Ga0132256_102305809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300015372\|Ga0132256_102353795	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300015373\|Ga0132257_104377774	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300015374\|Ga0132255_100215727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2723	Open in IMG/M
3300016270\|Ga0182036_11262524	All Organisms → cellular organisms → Bacteria → Acidobacteria	615	Open in IMG/M
3300017970\|Ga0187783_10573142	All Organisms → cellular organisms → Bacteria → Proteobacteria	817	Open in IMG/M
3300018089\|Ga0187774_10864526	All Organisms → cellular organisms → Bacteria → Acidobacteria	617	Open in IMG/M
3300018433\|Ga0066667_11557507	All Organisms → cellular organisms → Bacteria → Acidobacteria	587	Open in IMG/M
3300020016\|Ga0193696_1123174	Not Available	656	Open in IMG/M
3300021403\|Ga0210397_10742212	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300021405\|Ga0210387_10912507	All Organisms → cellular organisms → Bacteria → Acidobacteria	772	Open in IMG/M
3300021560\|Ga0126371_12796665	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300023069\|Ga0247751_1080455	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300025918\|Ga0207662_10512424	All Organisms → cellular organisms → Bacteria → Acidobacteria	827	Open in IMG/M
3300025930\|Ga0207701_10445786	All Organisms → cellular organisms → Bacteria → Acidobacteria	1112	Open in IMG/M
3300025930\|Ga0207701_10546041	Not Available	989	Open in IMG/M
3300025934\|Ga0207686_11595318	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300025936\|Ga0207670_11568447	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	560	Open in IMG/M
3300025941\|Ga0207711_10413959	All Organisms → cellular organisms → Bacteria → Acidobacteria	1253	Open in IMG/M
3300026089\|Ga0207648_10857351	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300026327\|Ga0209266_1016840	All Organisms → cellular organisms → Bacteria → Acidobacteria	4110	Open in IMG/M
3300026333\|Ga0209158_1302070	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300026538\|Ga0209056_10155766	All Organisms → cellular organisms → Bacteria → Acidobacteria	1741	Open in IMG/M
3300027471\|Ga0209995_1036370	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	828	Open in IMG/M
3300027886\|Ga0209486_10306615	All Organisms → cellular organisms → Bacteria → Acidobacteria	936	Open in IMG/M
3300027909\|Ga0209382_11128073	Not Available	807	Open in IMG/M
3300027965\|Ga0209062_1081574	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1415	Open in IMG/M
3300028145\|Ga0247663_1086213	Not Available	563	Open in IMG/M
3300028381\|Ga0268264_11114456	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	798	Open in IMG/M
3300030619\|Ga0268386_10421534	All Organisms → cellular organisms → Bacteria → Acidobacteria	933	Open in IMG/M
3300031231\|Ga0170824_111827473	All Organisms → cellular organisms → Bacteria → Acidobacteria	523	Open in IMG/M
3300031547\|Ga0310887_11027714	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300031908\|Ga0310900_11043119	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300031940\|Ga0310901_10342605	All Organisms → cellular organisms → Bacteria → Acidobacteria	638	Open in IMG/M
3300031947\|Ga0310909_11608547	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300032122\|Ga0310895_10522280	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300032157\|Ga0315912_10967783	Not Available	676	Open in IMG/M
3300032180\|Ga0307471_104340332	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300034664\|Ga0314786_019045	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.72%
Host-Associated	Host-Associated	23.28%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.41%
Plants	Host-Associated → Plants	22.41%
Aquatic	Environmental → Aquatic	4.31%
Human	Host-Associated → Human	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.66%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.03%
Marine	Environmental → Aquatic → Marine	1.72%
Sediment	Environmental → Aquatic → Sediment	1.72%
Roots	Host-Associated → Plants → Roots	1.72%
Freshwater	Environmental → Aquatic → Freshwater	0.86%
Digestive System	Host-Associated → Human → Digestive System	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.31%
Loam	Environmental → Terrestrial → Soil → Loam	15.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.45%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.59%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.72%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.72%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.86%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.34%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.03%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.31%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.45%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.72%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.86%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.07%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.34%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	6.03%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.31%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.59%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.59%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.72%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.72%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.72%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.86%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.86%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.86%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300002124	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010128	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012173	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014259	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300023069	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027471	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027965	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300028145	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK04	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034664	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_09429380	2170459010	Grass Soil	REHHQSVYNRSETIYTIEKLMARPGIDAKGPGYRPNRPMAEAKIFNKDEQKECAFPSVIEDRHPAVLYESMIRRRG
C687J26631_101199533	3300002124	Soil	DETVYGIEKLMARPGIDAKGPGYRPNRPFAEAKIXNPKEKDSCAXPSVTDERHPAVLYESMIQKRQ*
Ga0062590_1030096771	3300004157	Soil	AKGPGYRPNRPFAEAKIYNPKEKDSCAFPSVTDERHPAVLYESMIQKLQ*
Ga0058899_117367502	3300004631	Forest Soil	EKLMARPGIDEKGPGYRPNRPLAEAKIFNKQEQQTCPFPSVVEERHPAVLYESMIRRRG*
Ga0058862_100178073	3300004803	Host-Associated	KLMQRPGIDAKGEGYRPNRPMVEAKVFNQAEQKECPFPSVVEERHPAVLYESMIRKRG*
Ga0068993_102654251	3300005183	Natural And Restored Wetlands	ARPGIDTKGPGYRPNRPFAEAKLFNPKERDSCAWPSVTDERHPAVLYESMIQKRQ*
Ga0068993_103207291	3300005183	Natural And Restored Wetlands	KGAGYRPNRPFAEAHLYNSKEKDACAYPSLTEERHPAVLYESMIQKRQ*
Ga0066671_104542562	3300005184	Soil	IYSIEKLMARPGIDAKGPGYRPNRPMAEAKIFNPQEQKACPFPSVVEERHPAVLYESMIRRRS*
Ga0066676_100779721	3300005186	Soil	WGIEKLMARPAIDAKGPGYRPNRPMAEAKIFNKQEQQACPFPSHLEERHPAVLYESMIRRRG*
Ga0070683_1001987101	3300005329	Corn Rhizosphere	EKLMARPGIDAKGPGYRPNEPLAEAKIFDKDEQKECAFPSVIEERHPAVLYESMIRRRG*
Ga0066388_1013217171	3300005332	Tropical Forest Soil	PGIDAKGPGYRPNRPMLEAKIFDSKTQQSCPVPTTVKERHPAVLYESMIRKRE*
Ga0066388_1016874342	3300005332	Tropical Forest Soil	VYTRGETIYGIEKLMARPGIDAKGPGYRPNRTLAEAKIFNKKDQSVCAFPSIVEERHPAVLYESMIRRRGSEQN*
Ga0066388_1064368001	3300005332	Tropical Forest Soil	TIYTIEKLMARPGIDAKGPGYRPNQPMLEAKIFNKEEQKECPFPSVVEERHPAVLYESMIRRRGSAAD*
Ga0070689_1021837081	3300005340	Switchgrass Rhizosphere	HQAVYNRGETIYTIEKLMQRAGIYEKGPGYRPNDPFAEAKIFDPQKNTECPIPSGVDERHPAVLYESQINKRH*
Ga0070687_1000603561	3300005343	Switchgrass Rhizosphere	MARPGIDAKGPGYRPNRPFAEAKIFDPKKEPSCAIPSVTEERHPAVLYESMIQKRQ*
Ga0070673_1000076847	3300005364	Switchgrass Rhizosphere	GYRPNRPFAEAKLFNPKEKDACAYPSVTEERHPAVLYESMIQKRQ*
Ga0070688_1008458411	3300005365	Switchgrass Rhizosphere	AIILSREHHQAVYNRSDAIYPIEKLMARPGIDDKGPGYRPNRPMLEAKLFNKNEQKECAFPSVVEERHPAVLYESMFRRRR*
Ga0070708_1009234691	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSREHHQSVYGRAETIYGIEKLMERPGIDAKGPGYRPNRPMVEAKIFNKQEQQTCPFPSVLEERHPAVLYESMIRRRG*
Ga0070708_1021115982	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	IIMSREHHQSVYDRSEAIYTIETLMARPGIDAKGPGYRPNRPMLEAKIFNKDEQKECPFPSVGKERHPAVLYESMIRRRG*
Ga0066686_104324451	3300005446	Soil	AIIMSREHHQSVYGRAETIYGIEKLMERPGIDAKGPGYRPNRPMVEAKIFNKQEQQACPFPSVVEERHPAVLYESMIRRRV*
Ga0066682_100921101	3300005450	Soil	IDAKGPGYRPNRPMAEARIFNKPEQPVCPFPSHLEERHPAVLYESMIRRRG*
Ga0066682_101442531	3300005450	Soil	IEKLMARPAIDAKGPGYRPNRPMAEAKIFNKQEQQACPFPSHLEERHPAVLYESMIRRRG
Ga0066681_103711461	3300005451	Soil	RFETIWGIEKLMARPAIDAKGPGYRPNRPMAEARIFNKPEQPVCPFPSHLEERHPAVLYESMIRRRG*
Ga0068867_1004404781	3300005459	Miscanthus Rhizosphere	ARPGIDAKGPGYRPNRPFAEAQLFDPKKQEACAIPSVTEERHPAVLYESMIQKRQ*
Ga0070685_100087291	3300005466	Switchgrass Rhizosphere	NRDETLYSIEKLIQRPGINAKGPGYRPNRPFAEAKLFNPKEKDACAYPSVTDERHPAVLYESMIQKRQ*
Ga0070685_101943922	3300005466	Switchgrass Rhizosphere	VMSREHHQTAYDRSETIYPIEKLMARPGINAKGPGYRPNRPFAEAKLFNPKEKDACAYPSVTEERHPAVLYESMIQKRQ*
Ga0070704_1014865032	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	AYNRNETVYGIEKLMARPGIDAKGPGYRPNRPFAEAKIFNPKEKDSCAYPSVTDERHPAVLYESMIQKRQ*
Ga0066695_107558171	3300005553	Soil	SETIYGIEKLMARPGIDAKGPGYRPNRPMAEAKIFKKQEQQTCPFPSHIEERHPAVLYESMIRRRG*
Ga0066692_105101781	3300005555	Soil	RSETIYSIEKLMARPGIDAKGPGYRPNRPMAEAKIFNQQEQQTCPFPSVIEERHPAVLYESMIRRRV*
Ga0066699_107108563	3300005561	Soil	IDAKGPGYRPNRPMVEAKIFNKQEQQACPFPSVVEERHPAVLYESMIRRRV*
Ga0070702_1001303291	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	AIVMSREHHQAAYNRNETLYGIEKLMARPGIDAKGPGYRPNRPFAEAKIFDPKKEPSCAIPSVTEERHPAVLYESMIQKRQ*
Ga0066903_1062417493	3300005764	Tropical Forest Soil	IYTIEKLMARPGIDAKGPGYRPNRPMAEAKILNTEKQQSCPFPSVLEERHPAVLYESMIRRRG*
Ga0068863_1022858681	3300005841	Switchgrass Rhizosphere	GIDAKGPGYRPNRPFAEAKIFDPKKEPSCPIPSVTEERHPAVLYESMIQKRQ*
Ga0068871_1006917683	3300006358	Miscanthus Rhizosphere	HHQAAYSRTETLYGIEKLMARPGIQAKGAGYRPNRPFAEANIFDPNKEPTCAIPSVTEERHPAVLYESMIQKRQ*
Ga0066659_109857251	3300006797	Soil	MSREHHQSVYNRDETIYGIEKLMARPGIDAKGPGYRPNRPMAEAKIFDKETQTVCPIPSVIQERHPAVLYESMIRRRD*
Ga0066660_116591933	3300006800	Soil	LMARPGIDAKGPGYRPNRPMVEAKIFNKQEQQACPFPSVLEERHPAVLYESMIRRRV*
Ga0079218_106810142	3300007004	Agricultural Soil	GIEKLMARPGIDSKGPGYRPNRPFAEAKLFNPKEMDSCAYPSVTDERHPAVLYESMIQKRGR*
Ga0079218_112117011	3300007004	Agricultural Soil	SKGPGYRPNRPFAEAKLFNPKEKDTCAYPSVTDERHPAVLYESMIQKRQ*
Ga0099791_104303711	3300007255	Vadose Zone Soil	GIDAKGPGYRPNRPMIEAKIFNKEEQKVCAYPSVVQERHPAVLYESMIRRRE*
Ga0066710_1008392884	3300009012	Grasslands Soil	RPGIDAKGPAYRPNRPMVEAKICNKDEQKECAFPSVTEERHPAVLFEAMIRRRE
Ga0066710_1022804171	3300009012	Grasslands Soil	QSVYSREETIYGIEKLMARPGIDAKGPGYRPNRALAESKIFNKKEQQGCAFPSVVEERHPAVLYESMIRRRGSE
Ga0111539_115298322	3300009094	Populus Rhizosphere	MSREHHQAAYNRNETLYSIEKLMQRPGINAKGPGYRPNRPFAEAKLFNPKERDACAYPSVTDERHPAVLYESMIQKRQ*
Ga0105245_128587773	3300009098	Miscanthus Rhizosphere	DAKGPGYRPNRPFAEAKLFDPKTQEACPIPSVTEERHPAVLYESMLQRRQ*
Ga0114129_101097021	3300009147	Populus Rhizosphere	IMSREHHQSVYTRGETIYGIEKLMARPGIDAKGPGYRPNRALAEAKIFNKKDQSVCVFPSVVDERHPAVLYESMIRRRGSEQS*
Ga0111538_109599771	3300009156	Populus Rhizosphere	AIIMSREHHRSVYNRSDTIYTIEKLMQRPGIDAKGPGYRPNVPFAEARIFDPAENKECPIPSLTEERHPAVLYESMINKRH*
Ga0111538_137013491	3300009156	Populus Rhizosphere	RPGINAKGPGYRPNRPFAEAKLFNPKEKDACVYPSVTDERHPAVLYESMIQKRQ*
Ga0105237_123545501	3300009545	Corn Rhizosphere	AAYNRNETLYGIEKLMARPGIDAKGQGYRPNRPFAEAKIFDPKQEPTCASPSVTEERHPAVLYESMIQKRQ*
Ga0105252_102764563	3300009678	Soil	AAYNRSETLYGIEKLMQRPGIDQKGPGYRPNRPFAEAKIYNPKEKDACAYPSVTDERHPAVLYESMIQKRQ*
Ga0126374_103812171	3300009792	Tropical Forest Soil	VYNRLETIYTIEKLMACPGIDAKEPRYRPNRPMAEAKIFNKDEQKECAFPSVIEERHPAVLYESMIRRRG*
Ga0126384_100397143	3300010046	Tropical Forest Soil	YDRSEAIYTIETLMARAGIDAKGPGYRPNRPMLEAKIFNKDEQKECPFPSVAKERHPAVLYESMIRRRG*
Ga0126384_115221631	3300010046	Tropical Forest Soil	KLMARPGIDAKGPGYRPNRPMAEAKIFNKPEQQSCPFPSHLVERHPAVLYESMIRRRG*
Ga0126382_115587371	3300010047	Tropical Forest Soil	HHQSVYNRSETIYTIEKLMARPGIDAKGPGYRPNRPMAEAKIFNKDEQKQCPFPSGIEERHPAVLYESMIRRRG*
Ga0127486_10223382	3300010128	Grasslands Soil	MSREHHQSVYERFETIWGIEKLMARPAIDAKGPGYRPNRPMAEARIFNKPEQPACPFPSHLEERHPAVLYESMIRRRG*
Ga0126376_122831691	3300010359	Tropical Forest Soil	IDAKGPGYRPNRPMAEAKLFNKQEQQTCPFPSVVEERHPAVLYESMIRRRG*
Ga0126377_131029292	3300010362	Tropical Forest Soil	HQSVYDRSEAIYTIEKLMARPGIDAKGPGYRPNRPMAEAKIFDKDQQKVCAFPSVTEERHPAVLYESMIRRRG*
Ga0126383_101301373	3300010398	Tropical Forest Soil	SVYDRSEAIYTIEKLMARPGIDAKGPGYRPNRLMVEAKIFNKDEQRECVFPSVTEERHPAVLYESMIRRRG*
Ga0126383_110078811	3300010398	Tropical Forest Soil	KGPGYRPNRPMAEAKIFNKDEQKECAFPSVIEERHPAVLYESMIRRRG*
Ga0126383_113113702	3300010398	Tropical Forest Soil	MWVPRNRSETIYTIEKLMARPGIDAKGPGYRPNRPLAEAKIFNKDEQKECAFPSVIEERHPAVLYESMIQRRG*
Ga0134122_118627271	3300010400	Terrestrial Soil	EAIIMSREHHQSVYNRSDTIYTIEKLMQRPGIDAKGPGYRPNIPFAEAKIFDPVQNKECSIPSLTEERHPAVLYESMINKRH*
Ga0134121_127058031	3300010401	Terrestrial Soil	AYNRAETIYTIEKLMARPGIDAKGPGYRPNKTLAEAKIFNKDEQKECAFPSVVEERHPAVLYESMIRKRGSAS*
Ga0134123_116370913	3300010403	Terrestrial Soil	QRPGITEKGPGYRPNIPFAEAKIFDPAQNKECAFPSVTEERHPAVLYESQINKRH*
Ga0126317_106908404	3300011332	Soil	GYRPNRPFAEAKIYNSKEKDFCAYPSVTDERHPAVLYESMIQKRQ*
Ga0137327_11177591	3300012173	Soil	AIIMSREHHQSVYNRSESIYTIEKLMARPGIDAKGPGYRPNRPMAEAKIFNKDEQKECAFPSVVEERHPAVLYESMIRRRG*
Ga0137399_100426911	3300012203	Vadose Zone Soil	IMSREHHQSVYDRSETIYTIEKLMARPGIDAKGPGYRPNRPMIEAKIFNKEEQKVCAYPSVVQERHPAVLYESMIRRRD*
Ga0137381_117658401	3300012207	Vadose Zone Soil	HHQSVYNRSETIYTIEKLMARPGIDAKGPGYRPNRPMVEAKIFNKQEQQACPFPSVVEERHPAVLYESMIRRRG*
Ga0137371_102556432	3300012356	Vadose Zone Soil	EKLMARPAIDAKGPGYRPNRPMAEAKIFNKQEQQACPFPSHLEERHPAVLYESMIRRRG*
Ga0137361_117926141	3300012362	Vadose Zone Soil	SREHHQSVYNRSETIYTIEKLMQRPGIQDFGPGYRPNRPMAEAKIFDKDEQKQCAFPSVIEERHPAVLYESMIRRRHS*
Ga0157308_101118321	3300012910	Soil	INAKGPGYRPNRPFAEAKLFNPKEKDACAYPSVTDERHPAVLYESMIQKRQ*
Ga0126369_124081971	3300012971	Tropical Forest Soil	HQSVYDRSETIYGIEKLMARPGIDAKGPGYHPNRPLIEAKIFDKHEQKECPFPSVVEERHPAVLYESMIRRRQ*
Ga0126369_125275063	3300012971	Tropical Forest Soil	GIDAKGPGYRPNRPMAEAKIFNKAEQKECAFPSVTEERHPSVLYESMIRRRT*
Ga0157378_131319941	3300013297	Miscanthus Rhizosphere	RSETIYPIEKLMARPGINAQGPGYRPNRPFAEAKLFNPKEKDACAYPSVTEERHPAVLYESMIQKRQ*
Ga0075311_10748171	3300014259	Natural And Restored Wetlands	RDETVYGIEKLMARPGINSKGPGYRPNRPFAEAKLFNPKEKDSCAWPSVTEERHPAVLYESMIQKRR*
Ga0163163_114022951	3300014325	Switchgrass Rhizosphere	TIYGIEKLMARPGIDSKGPGYRPNRPFAEAKLFNPKEKDACAYPSVTQERHPAVLYESMIQKRQ*
Ga0157380_121498783	3300014326	Switchgrass Rhizosphere	AYNRNETVYGIEKLMARPGIDAKGPGYRPNRPFAEARIFDPKQEPTCAIPSVTEERHPAVLYESMIQKRQ*
Ga0157376_104911621	3300014969	Miscanthus Rhizosphere	EEAIVMSREHHQAAYSRTETLYGIEKLMARPGIQAKGAGYRPNRPFAEANIFDPNKEPTCAIPSVTEERHPAVLYESMIQKRQ*
Ga0157376_127669412	3300014969	Miscanthus Rhizosphere	AKGPGYRPNRPFAEAKLFNPKEKDACAYPSVTEERHPAVLYESMIQKRQ*
Ga0132256_1018282253	3300015372	Arabidopsis Rhizosphere	VYERNETIYGIEKLMERPGIDAKGPGYRPNRPMAEAKIFNKAEQKECAFPSVLEERHPAVLYESMIRRRQ*
Ga0132256_1023058091	3300015372	Arabidopsis Rhizosphere	RDETIYGIEKLMARPGIDAKGPGYRPNRALAEAKIFNKKDQSVCVFPSVVDERHPAVLYESMIRRRGSEQN*
Ga0132256_1023537951	3300015372	Arabidopsis Rhizosphere	RSETNYSIEKLMARPGIDAKGPGNRPNRPMAEAKIFNKQEQQACPFPSVVEERHPAVLYESMIHRRV*
Ga0132257_1043777741	3300015373	Arabidopsis Rhizosphere	EAIILSREHHQAVYDRSETIYPIEKLMARPGIDEKGPGYRPNRPMAEAKIFNKSEQMACAFPSVTEERHPAVLYESMIRRRK*
Ga0132255_1002157273	3300015374	Arabidopsis Rhizosphere	PGIDAKGPGYRPNRPMAEAKIFNKNEQKECVFPSVTEERHPAVLYESMIRKRV*
Ga0182036_112625241	3300016270	Soil	SETIYSIEKLMQRPGIDAKGEGYRPNRPMVEAKVFNQAEQKECPFPSVVEERHPAVLYESMIRKRG
Ga0187783_105731423	3300017970	Tropical Peatland	MARPGIDANGPGYRPNRPMAEAKLFNKQEQQACPFPSTVEERHPAVLYESMIRRRG
Ga0187774_108645262	3300018089	Tropical Peatland	MSREHHQSVYNRSETIYTIEKLMARPGIDAKGPGYRPNRPLAEAKIFNKKEQQVCAYPSVVEERHPAVLYESMIRRRGSEQT
Ga0066667_115575071	3300018433	Grasslands Soil	AIIMSREHHQSVYGRAETIYSIEKLMARPGIDAKGPGYRPNRPMVEAKIFNKQEQQACPFPSVVEERHPAVLYESMIRRRV
Ga0193696_11231742	3300020016	Soil	REHHQAAYNRNETVYGIEKLMARPGIDAKGPGYRPNRPFAEAKIFDPKKEPSCPIPSVTEERHPAVLYESMIQKRQ
Ga0210397_107422122	3300021403	Soil	IYTIEKLMARPGIDAKGPGYRPNRPLAEAKIFNKAEQKECAFPSVVEERHPAVLYESMIRRRG
Ga0210387_109125072	3300021405	Soil	SREHHQSVYNRSETIYTIEKLMARPGIDAKGPGYRPNRPLAEAKIFNKAEQKECAFPSVVEERHPAVLYESMIRRRG
Ga0126371_127966651	3300021560	Tropical Forest Soil	LMARPGIDAKGPGYRPNRLLAEAKIFNKEEQKECAFPSVIEERHPAVLYESMIRRRG
Ga0247751_10804552	3300023069	Soil	AAYNRDETLYSIEKLIQRPGINAKGPGYRPNRPFAEAKLFNPKEKDACAYPSVTDERHPAVLYESMIQKRQ
Ga0207662_105124242	3300025918	Switchgrass Rhizosphere	MSREHHQAAYSRSETLYGIEKLMARPGINTKGAGYRPNRPFAEAKLYNPKEKDVCAWPSVTEERHPAVLYESMIQKRQ
Ga0207701_104457862	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	PGYRPNRPFAEAKLFNPKEKDACAYPSVTEERHPAVLYESMIQKRQ
Ga0207701_105460412	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	IDAKGPGYRPNRPFAEAKIFDPKKEPSCAIPSVTEERHPAVLYESMIQKRQ
Ga0207686_115953182	3300025934	Miscanthus Rhizosphere	YDRSETICPIEKLMARPGINAKGPAYRPNRPFAEAKLFNPKEKDACAYPSVTEERHPAVLYESMIQKRQ
Ga0207670_115684472	3300025936	Switchgrass Rhizosphere	PEEAIVMSREHHQAVYNRGETIYTIEKLMQRAGIYEKGPGYRPNDPFAEAKIFDPQKNTECPIPSGVDERHPAVLYESQINKRH
Ga0207711_104139592	3300025941	Switchgrass Rhizosphere	MARPGISAKGPGYRPNRPFAEAKLFNPKEKDACAYPSVTEERHPAVLYESMIQKRQ
Ga0207648_108573511	3300026089	Miscanthus Rhizosphere	ARPGIDAKGPGYRPNRPFAEAQLFDPKKQEACAIPSVTEERHPAVLYESMIQKRQ
Ga0209266_10168401	3300026327	Soil	GIEKLMARPGIDAKGPGYRPNRPMAEARIFNKPEQPVCPFPSHLEERHPAVLYESMIRRR
Ga0209158_13020701	3300026333	Soil	PGIDAKGPGYRPNRPMAEAKIFKKQEQQTCPFPSHIEERHPAVLYESMIRRRG
Ga0209056_101557661	3300026538	Soil	WGIEKLMARPAIDAKGPGYRPNRPMAEAKIFNKQEQQACPFPSHLEERHPAVLYESMIRRRG
Ga0209995_10363701	3300027471	Arabidopsis Thaliana Rhizosphere	SKGPGYRPNRPFAEAKLYSPKEKDSCAFPSVTEERHPAVLYESMIQKRQ
Ga0209486_103066152	3300027886	Agricultural Soil	GIDSKGPGYRPNRPFAEAKLFNPKEMDSCAYPSVTDERHPAVLYESMIQKRGR
Ga0209382_111280731	3300027909	Populus Rhizosphere	QSVYDRSEAIYTIETLMARAGIDAKGPGYRPNRPMLEAKIFNKDEQKECPFPSVGKERHPAVLYESMIRRRG
Ga0209062_10815745	3300027965	Surface Soil	TIEKLMARPGIDAKGPGYRPNRPMAEAKIFNKEEQKECAFPSVIEERHPAVLYESMIRRR
Ga0247663_10862132	3300028145	Soil	IEKLMARPGIDAKGPGYRPNRPFAEAKIFDPKQEPTCAIPSVTEERHPAVLYESMIQKRQ
Ga0268264_111144561	3300028381	Switchgrass Rhizosphere	AYNRSETFYGIEKLMARPGIDAKGPGYRPNRPFAEAQLFDPKKQEACAIPSVTEERHPAVLYESMIQKRQ
Ga0268386_104215341	3300030619	Soil	AIVMSREHHQVAAERSETVYPIEKLMDRPGIDLNGVGYRPNEPFMEARLYSPSKATCDIPSGTEERHPSVLYESMIRRRT
Ga0170824_1118274732	3300031231	Forest Soil	FLFNAKGPGYRPNRPFAEAKIFDPKQEPTCAIPSVTEERHPAVLYESMIQKRQ
Ga0310887_110277143	3300031547	Soil	NRNETVYGIEKLMARPGIDAKGPGYRPNRPFSEAKLYNPKDKDACAWPSVTEERHPAVLYESMIQKRQ
Ga0310900_110431192	3300031908	Soil	IEKLIQRPGINAKGPGYRPNRPFAEAKLFNPKERDACAYPSVTDERHPAVLYESMIQKRQ
Ga0310901_103426053	3300031940	Soil	YGIEKLMARPGIDAKGPGYRPNRPFSEAKLYNPKDKDACAWPSVTEERHPAVLYESMIQKRQ
Ga0310909_116085471	3300031947	Soil	RSETIYTIEKLMARPGIDAKGPGYRPNRPLAEAKIFNKDEQKECAFPSVIEERHPAVLYESMIRRRG
Ga0310895_105222803	3300032122	Soil	PEEAIVMSREHHQAAYNRNETLYGIEKLMARPGIDAKGPGYRPNRPFSEAKLYNPKDKDSCAWPSVTEERHPAVLYESMIQKRQ
Ga0315912_109677831	3300032157	Soil	PGIDAKGPGYRPNRPFAEAKLFDAKQDPTCAIPSVTEERHPAVLYESMIQKRQ
Ga0307471_1043403322	3300032180	Hardwood Forest Soil	HHRSVYTRGETIYGIEKLMARPGIDAEGPGYRPKRALAEAKIFSPKDQQVCAFPSVVPERDPAVLYEPMIRRRGSQQS
Ga0314786_019045_2_199	3300034664	Soil	ETIYGIEKLMARPGIDQKGPGYRPNRPFAEAKIYNPKEKDSCAYPSVTDERHPAVLYESMIQKRQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078775

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences