Basic Information | |
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Family ID | F078682 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 116 |
Average Sequence Length | 52 residues |
Representative Sequence | MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSKCFQCHTDA |
Number of Associated Samples | 84 |
Number of Associated Scaffolds | 116 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 99.13 % |
% of genes near scaffold ends (potentially truncated) | 96.55 % |
% of genes from short scaffolds (< 2000 bps) | 93.97 % |
Associated GOLD sequencing projects | 83 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (92.241 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (50.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (57.759 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (49.138 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 39.22% β-sheet: 1.96% Coil/Unstructured: 58.82% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Soil Vadose Zone Soil Tropical Forest Soil Soil Grasslands Soil Soil Soil Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Populus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI10216J12902_1084410222 | 3300000956 | Soil | MTIRQGVRATLAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCH |
Ga0066388_1048444931 | 3300005332 | Tropical Forest Soil | MTIRRGVGAALAFASLLLAAAAHGQDGTQQSAQHPGRSVV |
Ga0066388_1080319552 | 3300005332 | Tropical Forest Soil | MRLRRTVGALLACAPLVLAAPVAAQDGAQPPAAQHPGRNVVMSKCFQCHTDAMFRDW |
Ga0066388_1080618351 | 3300005332 | Tropical Forest Soil | MTVWRNVGAALACAPLLLTAAAYGQDGAQQGTQHPGRSVVM |
Ga0066689_108286531 | 3300005447 | Soil | MIIWRNVGAALACAPLLLAAAAHGQDGAQQSAQHPGRSVVMSKCFQCHT |
Ga0070706_1014723021 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | MTIRQGVSAALAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHT |
Ga0070706_1014765621 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | MTIRQGVRATLAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHT |
Ga0070698_1013277301 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MIIRQGVSAALAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGW |
Ga0070696_1018374182 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | MIIWRNVGAALACAPLLLAAVAHGQDGAQQSAQHPGRSVVMSKCFQCHT |
Ga0066699_107643101 | 3300005561 | Soil | MTIRQGVRATLAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHTD |
Ga0066905_1008239872 | 3300005713 | Tropical Forest Soil | MIVWRNVGAALACAPLLLTAAAHGQDGAQQGAQHPGRSV |
Ga0066905_1010875811 | 3300005713 | Tropical Forest Soil | MINWRNVGAALACAPLLLAAAAHGQDGAQQSAQHP |
Ga0066903_1041836522 | 3300005764 | Tropical Forest Soil | MIIWRNVAAALACAPLLLAAAAHGQDDAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWEAA |
Ga0066903_1043670111 | 3300005764 | Tropical Forest Soil | MTIRQGVSAALACAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHTDAMFRDQR |
Ga0066903_1044514042 | 3300005764 | Tropical Forest Soil | MAVRRTLAALLACAPLALASAADAQDAGQQPAAQHPGRAVVMSKCFQCHTDAMFRDH |
Ga0066903_1047674561 | 3300005764 | Tropical Forest Soil | MIIWRNVGAALACAPLLLAAAAYGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRG |
Ga0066903_1063606571 | 3300005764 | Tropical Forest Soil | MTIRQGVNAALACAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQC |
Ga0066903_1082044221 | 3300005764 | Tropical Forest Soil | MTIRRTVGALLVGAPLVLAAPVAAQDGAQPPAAQHPGRNVVMSKCFQCHTDAMFRDWRQD |
Ga0074059_118130021 | 3300006578 | Soil | MTIRQGVSAALAFASLLLAAAAHGQDATQQSAQHPGRSVVM |
Ga0075420_1018981531 | 3300006853 | Populus Rhizosphere | MAVGRSLATLLVCAPLLLPAAPAGAQDAAQPPAAQHPGRAVVMSKCFQC |
Ga0075425_1018378982 | 3300006854 | Populus Rhizosphere | MTIRQGVSAALAFASLLLGAAAHGQDGTQQSAQHPGRSVVMSKCFQCHTDAM |
Ga0066709_1027605681 | 3300009137 | Grasslands Soil | MDYHLKRTGDQSMMAWRSVAVALACSLLLAVPATAQDAAQHPGRSVVMSKCFQCHTDAMFRDQRQDRGRWE |
Ga0126380_102141361 | 3300010043 | Tropical Forest Soil | MIVWRNVGAALACAPLLLTAAAHGQDGAQQGAQHPGRSVVMSKCFQ |
Ga0126380_104936442 | 3300010043 | Tropical Forest Soil | MMVWRNVGAALACAPLLLTAAAHGQDGAQQNAQHPGRSVVMSNCFQCHTDAMFRDQRQDRRGW |
Ga0126380_107382421 | 3300010043 | Tropical Forest Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQ |
Ga0126380_114038412 | 3300010043 | Tropical Forest Soil | MTLGRIVAVVFACVVVAAPAFAQDSTQQSAQHSGRSVVMSKCFQCHTDAMFREQRQDRRGWEAAI* |
Ga0126382_122484592 | 3300010047 | Tropical Forest Soil | MINWRNVGAALACAPLLLAAAAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMF |
Ga0126370_115117552 | 3300010358 | Tropical Forest Soil | MTIRQGVSAALAFAPLLLAAAAHGQDGTQQAAQHPGR |
Ga0126376_111760582 | 3300010359 | Tropical Forest Soil | MINWRNVGAALACAPLLLAAAAHGQDGAQQGAQHPGRSVVMSKCFQCHTDAMFR |
Ga0126378_125162392 | 3300010361 | Tropical Forest Soil | MTIRQCVSAALSCAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCF |
Ga0126379_131466262 | 3300010366 | Tropical Forest Soil | MIVWRNVGAALACAPLLLTAAAYGQDGAQQGTQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWEAAI |
Ga0126383_101221771 | 3300010398 | Tropical Forest Soil | MTIGRTAAAVFACVVLATPAFAQDGTQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRG |
Ga0126383_106075013 | 3300010398 | Tropical Forest Soil | MIVWRNVGAALACAPLLLTAAAYGQDGAQQGTQHPG |
Ga0126383_106091941 | 3300010398 | Tropical Forest Soil | MTIRQGVSAALTCAPLLLAAAAHGQDATQQTAQHPGRSVVMSKCFQCHTDAMFRDQRQ |
Ga0126383_109954621 | 3300010398 | Tropical Forest Soil | MIIWRNVGAALACAPLLLAAAAYGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGW |
Ga0137388_102046341 | 3300012189 | Vadose Zone Soil | MTLWRTVGVVLACAPLMLAAPANAQGTAQPAQQPGRSVVMSKCFQCHTDAM |
Ga0137380_115194382 | 3300012206 | Vadose Zone Soil | MTIRQGVRATLAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCF |
Ga0137384_106252011 | 3300012357 | Vadose Zone Soil | MTIRQGVRATLAFAPLLLAAAAHGQDGTQQAAQHPGR |
Ga0137359_117847981 | 3300012923 | Vadose Zone Soil | MTIRQGVSAALAFAPLLLAAAAQGQDGTQQAAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWE |
Ga0137404_123091171 | 3300012929 | Vadose Zone Soil | MIIWRNVGAALACAPLLLAAAAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGW* |
Ga0164300_103485121 | 3300012951 | Soil | MTIRQGVSAALAFAPLLLAAAAHGQDGNKQAAQHPGR |
Ga0164302_112546792 | 3300012961 | Soil | MTIRQGVSVALAFAPLLLAAAAHGQDGTQQTAQHPGRSVVMS |
Ga0126369_125678502 | 3300012971 | Tropical Forest Soil | MTIRQGVSAALACASLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCH |
Ga0182036_106000362 | 3300016270 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDATQQSTRHPGRSVVMSKCFQCHTDAMFRDQRQDR |
Ga0182041_113098541 | 3300016294 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWEAA |
Ga0182033_108967012 | 3300016319 | Soil | MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSKCFQCHTDA |
Ga0182034_108185262 | 3300016371 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHTDAMFRDQRQD |
Ga0182039_109671722 | 3300016422 | Soil | MIIWRNVAAALACAPLLLTATAHGQDGAQQSAQHPGRSVVMSKCFQCHTD |
Ga0066669_107682761 | 3300018482 | Grasslands Soil | MTIRQGVRATLAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHTDAMF |
Ga0126371_115540002 | 3300021560 | Tropical Forest Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHT |
Ga0126371_128086521 | 3300021560 | Tropical Forest Soil | MIVWRNVGAALACAPLLLTAAAHGQDGAQQGAQHPGRSVVMSKCFQCHTDAMFRDQRQD |
Ga0207700_104481871 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MIIRQGVSAALAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWEAAI |
Ga0257172_11121681 | 3300026482 | Soil | MTIRQGVSAALAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQC |
Ga0209526_106373761 | 3300028047 | Forest Soil | MTIRQGVSAALAFASLLLAAAAHGQDGTQQSAQHPGRSVVMSKCFQCHTDAMF |
Ga0318516_104088541 | 3300031543 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQ |
Ga0318534_105788671 | 3300031544 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMF |
Ga0318541_100608624 | 3300031545 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHTDAMFRD |
Ga0318541_104030072 | 3300031545 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTD |
Ga0318528_100065948 | 3300031561 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWEA |
Ga0318528_102583151 | 3300031561 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDGTQQTEQHPGRSMVMSKCFQ |
Ga0318573_104139762 | 3300031564 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDGTQQTEQHPGRSMVMSKCFLCHT |
Ga0318573_107664191 | 3300031564 | Soil | MTIRQGVSAALVFAPLLLAAAAHGQDGTQQSAQHPGRSVVMSKC |
Ga0318515_100624714 | 3300031572 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCH |
Ga0318515_103226202 | 3300031572 | Soil | MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSKCF |
Ga0310915_104760811 | 3300031573 | Soil | MTIRQGVSAALAFASLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQ |
Ga0318555_103686511 | 3300031640 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDATQQTAQHPGRSVVMSKCFQCHTD |
Ga0318555_106890401 | 3300031640 | Soil | MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSKCFQCHTDAMFRDQRQDRRGW |
Ga0318561_100930364 | 3300031679 | Soil | MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQ |
Ga0318561_101267073 | 3300031679 | Soil | MIVWRNVGAALACAPLLLTAAAHGQDGAQQGAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWEAAI |
Ga0318496_101630761 | 3300031713 | Soil | MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVM |
Ga0318493_108841452 | 3300031723 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQC |
Ga0318500_101749952 | 3300031724 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRK |
Ga0318492_101100001 | 3300031748 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQD |
Ga0318492_101540673 | 3300031748 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHADAMFR |
Ga0318492_101723641 | 3300031748 | Soil | MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSK |
Ga0318537_100918233 | 3300031763 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMS |
Ga0318509_100521424 | 3300031768 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMS |
Ga0318526_100181064 | 3300031769 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQR |
Ga0318546_105139961 | 3300031771 | Soil | MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSKC |
Ga0318546_105546542 | 3300031771 | Soil | MTIRQGVSAALAFASLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHTDAMFRDQRQD |
Ga0318543_100638971 | 3300031777 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDATQQSTRHPGRSVVMSKCFQCHTDAMFRDQRQDRRG |
Ga0318543_102582352 | 3300031777 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHADAM |
Ga0318498_102055991 | 3300031778 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDGTQQTEQHPGRSMVMSKCFQCH |
Ga0318566_103856052 | 3300031779 | Soil | MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNV |
Ga0318508_11141422 | 3300031780 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCH |
Ga0318547_104595651 | 3300031781 | Soil | MTIRQGVSAALVFAPLLLAAAAHGQDGTQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQD |
Ga0318552_102138352 | 3300031782 | Soil | MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVV |
Ga0318529_101108911 | 3300031792 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRKDRRGWE |
Ga0318529_101142181 | 3300031792 | Soil | MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSKCFQCH |
Ga0318529_102150612 | 3300031792 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVV |
Ga0318557_101517371 | 3300031795 | Soil | MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSKCFQCHTDAMFRDQRQDRRGWE |
Ga0318576_102161521 | 3300031796 | Soil | MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSKCFQCHTDAT |
Ga0318523_103206851 | 3300031798 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRKDRRGW |
Ga0318565_102233152 | 3300031799 | Soil | MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSKCFQCHT |
Ga0318567_102476461 | 3300031821 | Soil | MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSKCFQCHTDAMFRDQRQDR |
Ga0318567_104106091 | 3300031821 | Soil | MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWEAAI |
Ga0318511_103688751 | 3300031845 | Soil | MTIRQGVSAALAFAPLLLAAAAHGQGATQQSAQHPGRSVVMSKCFQCHTDAMFRD |
Ga0318544_102134492 | 3300031880 | Soil | MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSKCFQCHTDAMFRDQRQ |
Ga0306925_106442693 | 3300031890 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHTDA |
Ga0306925_107635222 | 3300031890 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRG |
Ga0306925_109013161 | 3300031890 | Soil | MTIRQGVSAALVFAPLLLAAAAHGQDGTQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWE |
Ga0318536_101938171 | 3300031893 | Soil | MIVWRNVGAALACAPLLLTAAAHGQDGAQQGAQHPGRSAVMSKC |
Ga0318536_102642042 | 3300031893 | Soil | MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSKCFQCHTDAMFRDQRQDRRG |
Ga0318522_100093201 | 3300031894 | Soil | MIVWRNVGAALACAPLLLTAAAHGQDGAQQGAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGW |
Ga0318520_104333622 | 3300031897 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWE |
Ga0306921_114438371 | 3300031912 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCF |
Ga0310911_102148153 | 3300032035 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHTD |
Ga0318559_101615543 | 3300032039 | Soil | MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSK |
Ga0318532_101141481 | 3300032051 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHADAMFRD |
Ga0318506_100033491 | 3300032052 | Soil | MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAM |
Ga0318533_110596421 | 3300032059 | Soil | MTIRQGVSAALAFASLLLAAAAHGQDGTQQAAQPPGRSVVMSKCFQCH |
Ga0318518_103668332 | 3300032090 | Soil | MTIRQGVSAALVFAPLLLAAAAHGQDGTQQSAQHPGRSVVMSKCFQCHTDAMFR |
Ga0318540_101484351 | 3300032094 | Soil | MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHTDAMF |
Ga0306920_1025790971 | 3300032261 | Soil | MTIRQGVSAALAFASLLLAAAAHGQDGTQQAAQPPGRSVVMSKCFQCHTDAMFRDQ |
Ga0310914_109909041 | 3300033289 | Soil | MIIWRNVAAALACAPLLLAATAHGQDVAQQSAQHPGRSVVMS |
Ga0318519_105142051 | 3300033290 | Soil | MTIRQGVSAALVFAPLLLAAAAHGQDGTQQSAQHPGRSVVMSKCFQ |
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