Metagenome / Metatranscriptome Family F078571

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078571
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	54 residues
Representative Sequence	PENKEAIKLIWGLVTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR
Number of Associated Samples	100
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.28 %
% of genes from short scaffolds (< 2000 bps)	83.62 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (43.966 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (24.138 % of family members)
Environment Ontology (ENVO)	Unclassified (65.517 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (90.517 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.80% β-sheet: 8.64% Coil/Unstructured: 55.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00211	Guanylate_cyc	8.62
PF05226	CHASE2	3.45
PF16363	GDP_Man_Dehyd	1.72
PF13224	DUF4032	1.72
PF03783	CsgG	1.72
PF13481	AAA_25	0.86
PF02562	PhoH	0.86
PF02511	Thy1	0.86
PF04773	FecR	0.86
PF00959	Phage_lysozyme	0.86
PF13202	EF-hand_5	0.86
PF05838	Glyco_hydro_108	0.86
PF00476	DNA_pol_A	0.86
PF16754	Pesticin	0.86
PF02518	HATPase_c	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	8.62
COG4252	Extracytoplasmic sensor domain CHASE2 (specificity unknown)	Signal transduction mechanisms [T]	3.45
COG1462	Curli biogenesis system outer membrane secretion channel CsgG	Cell wall/membrane/envelope biogenesis [M]	1.72
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	0.86
COG1351	Thymidylate synthase ThyX, FAD-dependent family	Nucleotide transport and metabolism [F]	0.86
COG1702	Phosphate starvation-inducible protein PhoH, predicted ATPase	Signal transduction mechanisms [T]	0.86
COG1875	Predicted ribonuclease YlaK, contains NYN-type RNase and PhoH-family ATPase domains	General function prediction only [R]	0.86
COG3926	Lysozyme family protein	General function prediction only [R]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.03 %
Unclassified	root	N/A	43.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.97 %
cellular organisms	root	All Organisms → cellular organisms	40.52 %
Viruses	superkingdom	All Organisms → Viruses	15.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.97 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.79 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	9.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.31 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.97 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	36.21 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	9.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.31 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.97 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	36.21 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	9.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.31 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	1.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.97 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	36.21 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.31 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.97 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	20.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.31 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	3.45 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.97 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	20.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.31 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	3.45 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.97 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	20.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.31 %
unclassified Myoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae	2.59 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.97 %
Xanthomarina	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina	20.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.31 %
Pelagibacter phage HTVC008M	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M	2.59 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.97 %
Xanthomarina gelatinilytica	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	20.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.31 %
Pelagibacter phage HTVC008M	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M	2.59 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001460\|JGI24003J15210_10113808	Not Available	750	Open in IMG/M
3300001589\|JGI24005J15628_10004065	Not Available	7294	Open in IMG/M
3300001834\|ACM2_1009682	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1101	Open in IMG/M
3300001955\|GOS2237_1030532	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1584	Open in IMG/M
3300005433\|Ga0066830_10022573	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1239	Open in IMG/M
3300006752\|Ga0098048_1036196	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1591	Open in IMG/M
3300006928\|Ga0098041_1291602	Not Available	519	Open in IMG/M
3300007541\|Ga0099848_1163332	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	817	Open in IMG/M
3300009149\|Ga0114918_10348872	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	816	Open in IMG/M
3300009413\|Ga0114902_1134151	Not Available	639	Open in IMG/M
3300009422\|Ga0114998_10085912	Not Available	1569	Open in IMG/M
3300009422\|Ga0114998_10095673	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1469	Open in IMG/M
3300009440\|Ga0115561_1218873	Not Available	719	Open in IMG/M
3300009440\|Ga0115561_1229645	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	698	Open in IMG/M
3300009526\|Ga0115004_10136824	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1486	Open in IMG/M
3300009603\|Ga0114911_1166489	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	613	Open in IMG/M
3300009705\|Ga0115000_10193772	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1341	Open in IMG/M
3300009785\|Ga0115001_10983924	Not Available	505	Open in IMG/M
3300010149\|Ga0098049_1232157	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	562	Open in IMG/M
3300010297\|Ga0129345_1206928	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	695	Open in IMG/M
3300010883\|Ga0133547_11116050	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1515	Open in IMG/M
3300011127\|Ga0151665_1007865	Not Available	612	Open in IMG/M
3300011253\|Ga0151671_1048917	Not Available	1197	Open in IMG/M
3300012394\|Ga0123365_1050607	Not Available	698	Open in IMG/M
3300017709\|Ga0181387_1088343	Not Available	630	Open in IMG/M
3300017714\|Ga0181412_1058724	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	960	Open in IMG/M
3300017725\|Ga0181398_1043420	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1094	Open in IMG/M
3300017727\|Ga0181401_1050474	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1140	Open in IMG/M
3300017735\|Ga0181431_1063534	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	832	Open in IMG/M
3300017738\|Ga0181428_1087814	Not Available	726	Open in IMG/M
3300017739\|Ga0181433_1036667	Not Available	1267	Open in IMG/M
3300017740\|Ga0181418_1106067	Not Available	681	Open in IMG/M
3300017741\|Ga0181421_1009432	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	2720	Open in IMG/M
3300017742\|Ga0181399_1095762	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	737	Open in IMG/M
3300017743\|Ga0181402_1031110	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1488	Open in IMG/M
3300017746\|Ga0181389_1048201	Not Available	1249	Open in IMG/M
3300017746\|Ga0181389_1163234	Not Available	588	Open in IMG/M
3300017749\|Ga0181392_1142831	Not Available	702	Open in IMG/M
3300017749\|Ga0181392_1236737	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	516	Open in IMG/M
3300017751\|Ga0187219_1127704	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	748	Open in IMG/M
3300017751\|Ga0187219_1194311	Not Available	564	Open in IMG/M
3300017758\|Ga0181409_1198285	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300017759\|Ga0181414_1022367	All Organisms → Viruses → Predicted Viral	1723	Open in IMG/M
3300017764\|Ga0181385_1251864	Not Available	529	Open in IMG/M
3300017773\|Ga0181386_1161486	Not Available	682	Open in IMG/M
3300017783\|Ga0181379_1007505	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	4644	Open in IMG/M
3300017786\|Ga0181424_10040465	Not Available	2020	Open in IMG/M
3300017786\|Ga0181424_10146324	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1014	Open in IMG/M
3300017985\|Ga0181576_10180078	All Organisms → cellular organisms → Bacteria	1390	Open in IMG/M
3300017991\|Ga0180434_11085237	Not Available	600	Open in IMG/M
3300018036\|Ga0181600_10014770	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M	5580	Open in IMG/M
3300019765\|Ga0194024_1042311	Not Available	1002	Open in IMG/M
3300020403\|Ga0211532_10412541	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	503	Open in IMG/M
3300020430\|Ga0211622_10105137	Not Available	1221	Open in IMG/M
3300020437\|Ga0211539_10476987	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	519	Open in IMG/M
3300020439\|Ga0211558_10397772	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	637	Open in IMG/M
3300020440\|Ga0211518_10128744	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1305	Open in IMG/M
3300020464\|Ga0211694_10199840	Not Available	820	Open in IMG/M
3300021356\|Ga0213858_10136594	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1198	Open in IMG/M
3300021959\|Ga0222716_10089700	All Organisms → Viruses → Predicted Viral	2096	Open in IMG/M
3300022074\|Ga0224906_1001083	All Organisms → cellular organisms → Bacteria → Proteobacteria	13723	Open in IMG/M
(restricted) 3300022913\|Ga0233404_10128232	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	609	Open in IMG/M
3300022927\|Ga0255769_10206547	Not Available	863	Open in IMG/M
3300023693\|Ga0232112_1017913	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	788	Open in IMG/M
3300023702\|Ga0232119_1014669	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1213	Open in IMG/M
3300024230\|Ga0228638_1098522	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	716	Open in IMG/M
3300024237\|Ga0228653_1008651	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	2495	Open in IMG/M
3300024242\|Ga0228673_1000063	Not Available	19931	Open in IMG/M
3300024244\|Ga0228678_1009817	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1696	Open in IMG/M
3300024244\|Ga0228678_1058975	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	733	Open in IMG/M
3300024248\|Ga0228676_1120672	Not Available	561	Open in IMG/M
3300024250\|Ga0228677_1107003	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	550	Open in IMG/M
3300024313\|Ga0228624_1038697	Not Available	993	Open in IMG/M
3300024321\|Ga0228626_1013605	Not Available	2288	Open in IMG/M
3300024329\|Ga0228631_1092099	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	732	Open in IMG/M
3300024334\|Ga0228671_1003972	Not Available	4820	Open in IMG/M
3300024334\|Ga0228671_1089623	Not Available	751	Open in IMG/M
3300024428\|Ga0233396_1049954	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1157	Open in IMG/M
3300025084\|Ga0208298_1018844	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1553	Open in IMG/M
3300025102\|Ga0208666_1153425	Not Available	512	Open in IMG/M
3300025120\|Ga0209535_1037429	Not Available	2209	Open in IMG/M
3300025120\|Ga0209535_1073721	All Organisms → Viruses → Predicted Viral	1326	Open in IMG/M
3300025120\|Ga0209535_1085723	Not Available	1176	Open in IMG/M
3300025120\|Ga0209535_1159723	Not Available	696	Open in IMG/M
3300025120\|Ga0209535_1208773	Not Available	539	Open in IMG/M
3300025127\|Ga0209348_1049165	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1430	Open in IMG/M
3300025132\|Ga0209232_1071253	Not Available	1221	Open in IMG/M
3300025137\|Ga0209336_10149573	Not Available	618	Open in IMG/M
3300025138\|Ga0209634_1051222	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	2037	Open in IMG/M
3300025594\|Ga0209094_1001985	Not Available	10898	Open in IMG/M
3300025759\|Ga0208899_1092935	Not Available	1143	Open in IMG/M
3300026136\|Ga0208763_1039565	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	700	Open in IMG/M
3300026136\|Ga0208763_1045775	Not Available	644	Open in IMG/M
3300026479\|Ga0228622_1067373	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	786	Open in IMG/M
3300026483\|Ga0228620_1014895	Not Available	2062	Open in IMG/M
3300027780\|Ga0209502_10029939	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M	3179	Open in IMG/M
3300027801\|Ga0209091_10084882	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1731	Open in IMG/M
3300028111\|Ga0233397_1133193	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	590	Open in IMG/M
3300028124\|Ga0228621_1032546	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	706	Open in IMG/M
3300028127\|Ga0233401_1017856	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1875	Open in IMG/M
3300028128\|Ga0228645_1020177	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1453	Open in IMG/M
3300028297\|Ga0228617_1114591	All Organisms → Viruses	641	Open in IMG/M
3300028416\|Ga0228614_1047699	Not Available	927	Open in IMG/M
3300028419\|Ga0228625_1079524	All Organisms → Viruses	677	Open in IMG/M
3300029319\|Ga0183748_1026907	All Organisms → Viruses → Predicted Viral	1924	Open in IMG/M
3300029319\|Ga0183748_1066846	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	942	Open in IMG/M
3300029319\|Ga0183748_1108169	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	624	Open in IMG/M
3300031142\|Ga0308022_1229135	Not Available	511	Open in IMG/M
3300031539\|Ga0307380_10875628	Not Available	732	Open in IMG/M
3300031721\|Ga0308013_10013908	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M	3495	Open in IMG/M
3300031774\|Ga0315331_10749961	Not Available	685	Open in IMG/M
3300031851\|Ga0315320_10312829	All Organisms → Viruses → Predicted Viral	1116	Open in IMG/M
3300032073\|Ga0315315_11765219	Not Available	527	Open in IMG/M
3300033742\|Ga0314858_118517	Not Available	676	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.14%
Terrestrial	Environmental → Terrestrial	0.86%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	97.41%
Freshwater	Environmental → Aquatic → Freshwater	0.86%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.86%
Soil	Environmental → Terrestrial → Soil	0.86%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	27.59%
Coastal	Environmental → Aquatic → Marine → Coastal	27.59%
Strait	Environmental → Aquatic → Marine → Strait	22.41%
Unclassified	Environmental → Aquatic → Marine → Unclassified	10.34%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	6.03%
Pelagic	Environmental → Aquatic → Marine → Pelagic	2.59%
River	Environmental → Aquatic → Freshwater → River	0.86%
Inlet	Environmental → Aquatic → Marine → Inlet	0.86%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.86%
Clay	Environmental → Terrestrial → Soil → Clay	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	27.59%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	26.72%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	22.41%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	10.34%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.45%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	2.59%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.86%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.86%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.86%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.86%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	24.14%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	22.41%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	22.41%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	7.76%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	2.59%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	2.59%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	2.59%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	1.72%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.72%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.72%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.72%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.86%
Marine Plankton	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton	0.86%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.86%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.86%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.86%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	0.86%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.86%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.86%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.86%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300001589	Marine viral communities from the Pacific Ocean - LP-40	Environmental	Open in IMG/M
3300001834	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM2, ROCA_DNA019_0.2um_2g	Environmental	Open in IMG/M
3300001955	Marine microbial communities from Gulf of Panama, Panama - GS021	Environmental	Open in IMG/M
3300005433	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006928	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG	Environmental	Open in IMG/M
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental	Open in IMG/M
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental	Open in IMG/M
3300009413	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12	Environmental	Open in IMG/M
3300009422	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138	Environmental	Open in IMG/M
3300009440	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512	Environmental	Open in IMG/M
3300009526	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90	Environmental	Open in IMG/M
3300009603	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904	Environmental	Open in IMG/M
3300009705	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128	Environmental	Open in IMG/M
3300009785	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300010297	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA	Environmental	Open in IMG/M
3300010883	western Arctic Ocean co-assembly	Environmental	Open in IMG/M
3300011127	Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_5, 0.02	Environmental	Open in IMG/M
3300011253	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate	Environmental	Open in IMG/M
3300012394	Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_201_2m (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017709	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27	Environmental	Open in IMG/M
3300017714	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15	Environmental	Open in IMG/M
3300017725	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29	Environmental	Open in IMG/M
3300017727	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20	Environmental	Open in IMG/M
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental	Open in IMG/M
3300017738	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12	Environmental	Open in IMG/M
3300017739	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10	Environmental	Open in IMG/M
3300017740	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13	Environmental	Open in IMG/M
3300017741	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19	Environmental	Open in IMG/M
3300017742	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21	Environmental	Open in IMG/M
3300017743	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17	Environmental	Open in IMG/M
3300017746	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29	Environmental	Open in IMG/M
3300017749	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15	Environmental	Open in IMG/M
3300017751	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)	Environmental	Open in IMG/M
3300017758	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30	Environmental	Open in IMG/M
3300017759	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28	Environmental	Open in IMG/M
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental	Open in IMG/M
3300017773	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24	Environmental	Open in IMG/M
3300017783	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10	Environmental	Open in IMG/M
3300017786	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18	Environmental	Open in IMG/M
3300017985	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017991	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaG	Environmental	Open in IMG/M
3300018036	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)	Environmental	Open in IMG/M
3300019765	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG	Environmental	Open in IMG/M
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental	Open in IMG/M
3300020430	Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)	Environmental	Open in IMG/M
3300020437	Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)	Environmental	Open in IMG/M
3300020439	Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)	Environmental	Open in IMG/M
3300020440	Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)	Environmental	Open in IMG/M
3300020464	Marine microbial communities from Tara Oceans - TARA_B100000530 (ERX556075-ERR599101)	Environmental	Open in IMG/M
3300021356	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300022074	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)	Environmental	Open in IMG/M
3300022913 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_2_MG	Environmental	Open in IMG/M
3300022927	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG	Environmental	Open in IMG/M
3300023693	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 29R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023694	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 31R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023702	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 82R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024230	Seawater microbial communities from Monterey Bay, California, United States - 48D	Environmental	Open in IMG/M
3300024237	Seawater microbial communities from Monterey Bay, California, United States - 65D	Environmental	Open in IMG/M
3300024242	Seawater microbial communities from Monterey Bay, California, United States - 91D	Environmental	Open in IMG/M
3300024244	Seawater microbial communities from Monterey Bay, California, United States - 125D_r	Environmental	Open in IMG/M
3300024248	Seawater microbial communities from Monterey Bay, California, United States - 48D_r	Environmental	Open in IMG/M
3300024250	Seawater microbial communities from Monterey Bay, California, United States - 58D_r	Environmental	Open in IMG/M
3300024313	Seawater microbial communities from Monterey Bay, California, United States - 29D	Environmental	Open in IMG/M
3300024321	Seawater microbial communities from Monterey Bay, California, United States - 31D	Environmental	Open in IMG/M
3300024329	Seawater microbial communities from Monterey Bay, California, United States - 39D	Environmental	Open in IMG/M
3300024334	Seawater microbial communities from Monterey Bay, California, United States - 89D	Environmental	Open in IMG/M
3300024428	Seawater microbial communities from Monterey Bay, California, United States - 32D	Environmental	Open in IMG/M
3300025084	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025102	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025120	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)	Environmental	Open in IMG/M
3300025127	Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)	Environmental	Open in IMG/M
3300025132	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)	Environmental	Open in IMG/M
3300025137	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)	Environmental	Open in IMG/M
3300025138	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)	Environmental	Open in IMG/M
3300025594	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)	Environmental	Open in IMG/M
3300025759	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)	Environmental	Open in IMG/M
3300026136	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B (SPAdes)	Environmental	Open in IMG/M
3300026479	Seawater microbial communities from Monterey Bay, California, United States - 26D	Environmental	Open in IMG/M
3300026483	Seawater microbial communities from Monterey Bay, California, United States - 23D	Environmental	Open in IMG/M
3300027780	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)	Environmental	Open in IMG/M
3300027801	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)	Environmental	Open in IMG/M
3300028111	Seawater microbial communities from Monterey Bay, California, United States - 35D	Environmental	Open in IMG/M
3300028124	Seawater microbial communities from Monterey Bay, California, United States - 25D	Environmental	Open in IMG/M
3300028127	Seawater microbial communities from Monterey Bay, California, United States - 49D	Environmental	Open in IMG/M
3300028128	Seawater microbial communities from Monterey Bay, California, United States - 57D	Environmental	Open in IMG/M
3300028297	Seawater microbial communities from Monterey Bay, California, United States - 18D	Environmental	Open in IMG/M
3300028416	Seawater microbial communities from Monterey Bay, California, United States - 15D	Environmental	Open in IMG/M
3300028419	Seawater microbial communities from Monterey Bay, California, United States - 30D	Environmental	Open in IMG/M
3300029319	Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516	Environmental	Open in IMG/M
3300031142	Marine microbial communities from water near the shore, Antarctic Ocean - #353	Environmental	Open in IMG/M
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental	Open in IMG/M
3300031721	Marine microbial communities from water near the shore, Antarctic Ocean - #181	Environmental	Open in IMG/M
3300031774	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915	Environmental	Open in IMG/M
3300031851	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515	Environmental	Open in IMG/M
3300032073	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416	Environmental	Open in IMG/M
3300033742	Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24003J15210_101138081	3300001460	Marine	CTLYPNIDLVTFTPPENKENFQILWGLISFPSGTDLTTSISTGHIALVAITTLGAIIGFYFTPGGKR*
JGI24005J15628_1000406511	3300001589	Marine	TLWPGVELVTFTPPENKEAIKLIWGLVTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR*
ACM2_10096821	3300001834	Marine Plankton	KLLWGLVTFPSGADITTAITTGHISLVSIATLGAIIGFYFTPGGKN*
GOS2237_10305321	3300001955	Marine	FVPPEQFKEINVLWGLVKVPIDSGITTSITTGHIALVSITTLGAIIGFYFTPGGKR*
Ga0066830_100225731	3300005433	Marine	EAVRILWGLVTFPSGADITTTITTGHIALVSIATLGAIIGFYFTPSAGGK*
Ga0098048_10361961	3300006752	Marine	PNAQSRNIEILWGFITIPRGDEVVSAITTGHISLVSIATLGAIIGFYFTPAAGGK*
Ga0098041_12916021	3300006928	Marine	SILWGLYKMPVDQGITTSITTGHISLVSITTLGAIIGFYFTPAGKR*
Ga0099848_11633321	3300007541	Aqueous	PENKEAVSILWGLARFPSGADITTTITTGHIALVSVATLAAIIGFYFTPSAGGK*
Ga0114918_103488721	3300009149	Deep Subsurface	LWPGVEIITFTPPENKESFKFLWGLVTLPSGTDVTASITTGHITLVSVATLGAIIGFYFTPGGRR*
Ga0114902_11341512	3300009413	Deep Ocean	ESWDILWGFISIPSGSDLTTSISTGHIALVAITTLGAIIGFYFTPGGKR*
Ga0114998_100859121	3300009422	Marine	EAIKLIWGLVTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR*
Ga0114998_100956731	3300009422	Marine	LVTFTPPENKEAIKLIWGLVTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR*
Ga0115561_12188731	3300009440	Pelagic Marine	PPESKEQINLIWGLIKFPSGAEITTSITTGHIALVAITTLGAIIGFYFTPGGRRG*
Ga0115561_12296451	3300009440	Pelagic Marine	PPKSKESLSVLWGLVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGAK*
Ga0115004_101368241	3300009526	Marine	ENKEAISIIWGLVKFPSGADITTSITTGHISLVSIATLGAIVGFYFTPGGKR*
Ga0114911_11664891	3300009603	Deep Ocean	IYPGIDLVTFTPPENKESWDILWGFISIPSGSDLTTSISTGHIALVAITTLGAIIGFYFTPGGKR*
Ga0115000_101937721	3300009705	Marine	TPPESKEAVSLLWGLIKFPSGSEITSTITTGHISLVAITTLGAIIGFYFTPAGRKG*
Ga0115001_109839241	3300009785	Marine	ENKEAIKLIWGLVTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR*
Ga0098049_12321571	3300010149	Marine	GVELVTFTPPENKESFKLLWGLVTFPSGADITTSITTGHIALVSIATLGAIVGFYFTPGGKR*
Ga0129345_12069282	3300010297	Freshwater To Marine Saline Gradient	ISVLCTIWPGVELITFTPPENKENFSLLWGLVKFPSGTEVTTAITTGHISLVAMACLASIIGFYFTPSAGGK*
Ga0133547_111160501	3300010883	Marine	LCTLWPGVELVTFTPPENKEAIKLIWGLVTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR*
Ga0151665_10078651	3300011127	Marine	KENWDILWGLISFPSGSDLTTSISTGHIALVAITTLGAIIGFYFTPGGKR*
Ga0151671_10489171	3300011253	Marine	EISILWGLYKMPVDQGITTSITTGHISLVSITTLGAIIGFYFTPAGKR*
Ga0123365_10506071	3300012394	Marine	KEINVMWGLFKMPIDSGITTSITTGHIALVSITTLGAIIGFYFTPGGKR*
Ga0181387_10883431	3300017709	Seawater	LYKMPVDQGITTSITTGHISLVSITTLGAIIGFYFTPAGKR
Ga0181412_10587242	3300017714	Seawater	VLWGLVTFPSGADVTTAITTGHISLVSVATLGAIIGFYFTPGGK
Ga0181412_11253203	3300017714	Seawater	GADITTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0181398_10434201	3300017725	Seawater	TFTPPESKEATSILWGLITFPSGTDITSTITTGHISLVAITTLGAIIGFYFTPGGRKG
Ga0181401_10504741	3300017727	Seawater	SLIWGLIKFPSGADITTSITTGHISLVSIATLGAIVGFYFTPGGKR
Ga0181431_10635341	3300017735	Seawater	ELITFTPPENKEAVRILWGLVTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPSAGG
Ga0181428_10878141	3300017738	Seawater	FTPPENKEAVRILWGLVTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0181433_10366673	3300017739	Seawater	QEISILWGLYKMPVDQGITTSITTGHISLVSITTLGAIIGFYFTPAGKR
Ga0181418_11060671	3300017740	Seawater	LIWGLVTFPSGADITTAITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0181421_100943212	3300017741	Seawater	ENKEAVRILWGLVTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0181399_10957621	3300017742	Seawater	ILCTLYPGVELITFTPPENKEAISVLWGLVKFPSGADVTTAITTGHISLVSIATLGAIIGFYFTPGGKR
Ga0181402_10311104	3300017743	Seawater	PENKEAIKVLWGLVTFPSGADVTTAITTGHISLVSVATLGAIIGFYFTPGGK
Ga0181389_10482013	3300017746	Seawater	PSSDLVAFTPPKNKENCEILWGLISFPSGTDLTTSISTGHIALVAITTLGAIIGFYFTPGGKR
Ga0181389_11632342	3300017746	Seawater	FTPPENKESIKLIWGLVTFPSGADITTAITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0181392_11428311	3300017749	Seawater	IPPEQTQEISVLWGLYKMPVDQGLTTSITTGHISLVSITTLGAIIGFYFTPAGKR
Ga0181392_12367371	3300017749	Seawater	TFTPPENKEAISILFGLIKFPSGADITTSITTGHISLVSIATLGAIVGFYFTPGGKR
Ga0187219_11277043	3300017751	Seawater	TFAPPESKEATSLLWGLIKFPSGTDITSTITTGHISLVAITTLGAIIGFYFTPGGRKG
Ga0187219_11943113	3300017751	Seawater	MPVDQGITTSITTGHISLVSITTLGAIIGFYFTPAGKR
Ga0181409_11982851	3300017758	Seawater	WGLIKFPSGADITTAITTGHIALVSIATLGAIVGFYFTPAGKN
Ga0181414_10223674	3300017759	Seawater	LVTFTPPESKTGYKFIWGLIDIPAQNEITTTITTGHISLVSITTLAAIIGFYFTPSAGGK
Ga0181385_12518641	3300017764	Seawater	IELITFTPPENKENFDILWGFISFPSGSDLTTSISTGHIALVAITTLGAIIGFYFTPGGK
Ga0181386_11614862	3300017773	Seawater	FTPPENKENWDILWGLISFPSGSDLTTSISTGHIALVAITTLGAIIGFYFTPGGKR
Ga0181379_10075051	3300017783	Seawater	LCTLYPGVELITFTPPENKEAISVLWGLVKFPSGADVTTAITTGHISLVSIATLGAIIGFYFTPGGKR
Ga0181424_100404651	3300017786	Seawater	ISILCTLFPGVELITFTPPENKEAISILFGLIKFPSGADITTSITTGHISLVSIATLGAIVGFYFTPGGKR
Ga0181424_101463241	3300017786	Seawater	ISIIWGLIKFPSGADITTSITTGHISLVSIATLGAIVGFYFTPGGKR
Ga0181576_101800781	3300017985	Salt Marsh	TLVTFTPPENKEATEILWGLITFPSGTEITSTITTGHISLVAITTLGAIIGFYFTPSAGG
Ga0180434_110852373	3300017991	Hypersaline Lake Sediment	ITFTPPENKEPFKFFWGLVTLPSGTDITASITTGHITLVSVATLGAIIGFYFTPGGKR
Ga0181600_100147701	3300018036	Salt Marsh	PPESKTGYKFIWGLIDIPAQPDITTTITTGHISLVSITTLAAIIGFYFTPSAGGK
Ga0194024_10423113	3300019765	Freshwater	PESKTGYKFIWGLIDIPAQTDITTTITTGHISLVSITTLAAIIGFYFTPSAGGK
Ga0211532_104125412	3300020403	Marine	NFATISILCTIYPGVELITFTPPENKEAMSILWGLVKMPSGADVTTAITTGHISLVSIATLGAIIGFYFTPGGKR
Ga0211622_101051371	3300020430	Marine	EQAQEISILWGLYKLPVDQGVTTSITTGHISLVSITTLGAIIGFYFTPAGKR
Ga0211539_104769872	3300020437	Marine	ESVKILWGLITFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0211558_103977723	3300020439	Marine	PENKEATEILWGLITFPSGTEITSTITTGHISLVAITTLGAIIGFYFTPGGRKG
Ga0211518_101287441	3300020440	Marine	VTFTPPENKEAIKVLWGLVTFPSGADVTTAITTGHISLVSVATLGAIIGFYFTPGGK
Ga0211694_101998401	3300020464	Marine	ELVTFIPPEQTKEISILWGLYKTPIDEGITTAITTGHISLVSITTLGAIIGFYFTPAGKR
Ga0213858_101365941	3300021356	Seawater	PESKEAMSILWGLVKIPSGNEITSTITTGHISLVSIATLGAIVGFYFTPGGKR
Ga0222716_100897001	3300021959	Estuarine Water	LWPTVHLVTFTPPESKTGYKFIWGLIDIPAQNEITTTITTGHISLVSITTLAAIIGFYFTPSAGGK
Ga0224906_10010831	3300022074	Seawater	ISILWGLYKMPVDQGITTSITTGHISLVSITTLGAIIGFYFTPAGKR
(restricted) Ga0233404_101282321	3300022913	Seawater	GVTIITFTPPENKEAFSILWGIVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0255769_102065471	3300022927	Salt Marsh	ESKTGYKFIWGLIDIPAQTDITTTITTGHISLVSITTLAAIIGFYFTPSAGGK
Ga0232112_10179131	3300023693	Seawater	PENKENFSLLWGLVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0228683_10051231	3300023694	Seawater	KFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0232119_10146691	3300023702	Seawater	EAFSILWGIVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0228638_10985222	3300024230	Seawater	PGVTIITFTPPENKEAFSILWGIVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0228653_10086517	3300024237	Seawater	TIWPGVELITFTPPENKENFSLLWGLVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0228673_10000631	3300024242	Seawater	LVTFTPPENKESFKILWGLVSFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0228678_10098171	3300024244	Seawater	FKILWGLVSFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0228678_10589752	3300024244	Seawater	FSILWGIVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0228676_11206722	3300024248	Seawater	GLVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0228677_11070031	3300024250	Seawater	KENFSLLWGLVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0228624_10386972	3300024313	Seawater	VLCTIWPGVELITFTPPENKENFSLLWGLVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0228626_10136051	3300024321	Seawater	VISVLCTIWPGVELITFTPPENKENFSLLWGLVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0228631_10920991	3300024329	Seawater	TPPENKENFSLLWGLVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0228671_100397213	3300024334	Seawater	LVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0228671_10896231	3300024334	Seawater	LLWGLVTFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0233396_10499544	3300024428	Seawater	FTPPESKENFSLLWGLVKFPSGSEVTSTITTGHISLVAITTLGAIIGFYFTPGGRKG
Ga0208298_10188441	3300025084	Marine	TFTPPENKESFKLLWGLVTFPSGADITTSITTGHIALVSIATLGAIVGFYFTPGGKR
Ga0208666_11534252	3300025102	Marine	ITFIPPEQTQEISILWGLYKMPVDQGITTSITTGHISLVSITTLGAIIGFYFTPAGKR
Ga0209535_10374291	3300025120	Marine	TPPENKEAIKLIWGLVTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0209535_10737211	3300025120	Marine	LIWGLVTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0209535_10857234	3300025120	Marine	IKILWGLITFPSGADITTAITTGHISLVSIATLGAIVGFYFTPGGKR
Ga0209535_11597232	3300025120	Marine	ISIWCTIYPSIDLVTFTPPENKENFEILWGLISFPSGTDLTTSISTGHIALVAITTLGAIIGFYFTPGGKR
Ga0209535_12087731	3300025120	Marine	GVELVTFTPPENKEAIKLIWGLVTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0209348_10491652	3300025127	Marine	PPENKESIKLIWGLVTFPSGADITTAITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0209232_10712531	3300025132	Marine	TIPIGEQSPTTAITTGHITLVSITTLGAIIGFYFTPGGKK
Ga0209336_101495732	3300025137	Marine	SIDLVTFTPPENKENFEILWGLISFPSGTDLTTSISTGHIALVAITTLGAIIGFYFTPGGKR
Ga0209634_10512227	3300025138	Marine	FTPPENKEATSILWGLITFPSGADITTSITTGHISLVAITTLGAIIGFYFTPGGRKG
Ga0209094_100198519	3300025594	Pelagic Marine	PEQAKEISILWGLYRMPIDQGITTAITTGHISLVSITTLGAIIGFYFTPGGKR
Ga0208899_10929352	3300025759	Aqueous	LVEFPSGAEVTTAITTGHISLVSIATLGAIIGFYFTPSAGGK
Ga0208763_10395652	3300026136	Marine	TPPENKESVRILWGLVTFPSGADITTTITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0208763_10457751	3300026136	Marine	GLVTFPSGADITTTITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0228622_10673731	3300026479	Seawater	LLWGLVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0228620_10148954	3300026483	Seawater	SLLWGLVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0209502_100299391	3300027780	Marine	EAIKLIWGLFTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0209091_100848822	3300027801	Marine	TPPENKEAISILFGLIKFPSGADITTSITTGHISLVSIATLGAIVGFYFTPGGKR
Ga0233397_11331931	3300028111	Seawater	TFTPPENKESFKILWGLVSFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0228621_10325462	3300028124	Seawater	AVRILWGLVTFPSGADITTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0233401_10178561	3300028127	Seawater	SVLCTLWPGVELVTFTPPENKESFKILWGLVSFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0228645_10201771	3300028128	Seawater	ESVNLFWGLIKFPSGADITTSITTGHISLVAITTLGAIIGFYFTPGGRKG
Ga0228617_11145913	3300028297	Seawater	KESFKILWGLVSFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0228614_10476992	3300028416	Seawater	PGVELITFTPPENKENFSLLWGLVKFPSGADVTTAITTGHIALVSIATLGAIIGFYFTPSAGGK
Ga0228625_10795241	3300028419	Seawater	VTFTPPENKESFKILWGLVSFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR
Ga0183748_10269077	3300029319	Marine	SFLWGLWKIPAGNQPTTAITTGHITLVSITTLGAIIGFYFTPGGKK
Ga0183748_10668463	3300029319	Marine	TLYPGVELITFTPPENKEAIKILWGLVTFPSGADVTTSITTGHISLVSIATLGAIIGFYFTPGGKR
Ga0183748_11081691	3300029319	Marine	TFTPPESKEAFTLLWGLIKFPSGSDITTVITTGHISLVSIATLGAIVGFYFTPGGK
Ga0308022_12291352	3300031142	Marine	YKFIWGLIDIPTQADITTTITTGHISLVSITTLAAIIGFYFTPSAGGK
Ga0307380_108756281	3300031539	Soil	CTIWPGVELITFTPPENKENFSLLWGLVEFPSGAEVTTAITTGHISLVSIATLGAIIGFYFTPSAGGK
Ga0308013_100139083	3300031721	Marine	ESKTSYKFIWGLIDIPTQADITTTITTGHISLVSITTLAAIIGFYFTPSAGGK
Ga0315331_107499611	3300031774	Seawater	WGLFTMPIDQGLTTSITTGHISLVSITTLGAIIGFYFTPAGKR
Ga0315320_103128291	3300031851	Seawater	QEISVLWGLYKMPIDQGLTTSITTGHISLVSITTLGAIIGFYFTPAGKR
Ga0315315_117652191	3300032073	Seawater	WGLIDIPAQNEITTTITTGHISLVSITTLAAIIGFYFTPSAGGK
Ga0314858_118517_514_675	3300033742	Sea-Ice Brine	PENKEAIKLIWGLVTFPSGADITTSITTGHIALVSIATLGAIIGFYFTPGGKR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters