Basic Information | |
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Family ID | F078495 |
Family Type | Metagenome |
Number of Sequences | 116 |
Average Sequence Length | 53 residues |
Representative Sequence | LNLSILVFWLFLFQNVNVSSATALVDQASFYMLLVNVGEALALSNLLRVTWK |
Number of Associated Samples | 82 |
Number of Associated Scaffolds | 116 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 98.28 % |
% of genes from short scaffolds (< 2000 bps) | 87.93 % |
Associated GOLD sequencing projects | 72 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (45.690 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (35.345 % of family members) |
Environment Ontology (ENVO) | Unclassified (56.897 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (61.207 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 82.69% β-sheet: 0.00% Coil/Unstructured: 17.31% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Vadose Zone Soil Grasslands Soil Surface Soil Agricultural Soil Soil Grasslands Soil Soil Hardwood Forest Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI25381J37097_10629752 | 3300002557 | Grasslands Soil | SFTMGLVLFGTFFVVLNLAILVFWIFLFENVSSAGTLVNQAATYMLLVNVGEALALANLLRVTWK* |
JGI25386J43895_102008941 | 3300002912 | Grasslands Soil | LAILVFWLFLFESASSAATFVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0066674_100390341 | 3300005166 | Soil | SILVFWLFLFQNVNVSSATALVDQASFYMLLVNVGEALALSNLLRVTWK* |
Ga0066674_101468573 | 3300005166 | Soil | LAILVFWLFLYQNSAAALVDQASFYMLLVNIGEALALANLLRVTWK* |
Ga0066672_100468081 | 3300005167 | Soil | VFWLFLFENVSSAGTLVDQASTYMLLVNVGEALALGNLLRVTWK* |
Ga0066672_102713141 | 3300005167 | Soil | QNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK* |
Ga0066680_102783303 | 3300005174 | Soil | SFTMGLVLFGAFFVMLNLAIIVFWLFLFQNVASAASFVDQASSYMLVVNLGETLALANLLRVTWK* |
Ga0066680_106325462 | 3300005174 | Soil | FTLGLVLFGSFFVILNLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK* |
Ga0066679_103542791 | 3300005176 | Soil | SILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK* |
Ga0066678_104272453 | 3300005181 | Soil | NLAILVFWLFLFENVSSAGTLVDQASTYMLVVNVGEALALANLLRVTWK* |
Ga0066686_108274961 | 3300005446 | Soil | AILLFWLFLFENVSAAGTLVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0066686_110181771 | 3300005446 | Soil | AILVFWLVLFQNFESPTLGAFVDQASVYMLLVNLGEALALVNLLRVTWK* |
Ga0066689_102939413 | 3300005447 | Soil | LFGSFFVILNLSILVFWLFLFQNVNVSSATALVDQASFYMLVVNIGEALALSNLLRVTWK |
Ga0066682_100921871 | 3300005450 | Soil | LNLSILVFWLFLFQNVNVSSATALVDQASFYMLLVNVGEALALSNLLRVTWK* |
Ga0066681_106809581 | 3300005451 | Soil | FWLFLYQNSAAALVDQASFYMLLVNIGEALALANLLRVTWK* |
Ga0066697_102917081 | 3300005540 | Soil | TFFVVLNLAILVFWLFLFENVSSAGTLVDQAATYMLLVNVGEALALANLLRVTWK* |
Ga0066661_100694801 | 3300005554 | Soil | VFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK* |
Ga0066692_106830832 | 3300005555 | Soil | LNLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK* |
Ga0066692_110374821 | 3300005555 | Soil | NVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK* |
Ga0066707_109433632 | 3300005556 | Soil | LFLFQNVNVSSATALVDQASFYMLLVNIGEALALSNLLRVTWK* |
Ga0066702_102362953 | 3300005575 | Soil | LVLFGSFFVILNLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK* |
Ga0066708_101784823 | 3300005576 | Soil | MGLVLFGTFFVVLNLAILVFWLFLFENVSSAGTLVDQAATYMLLVNVGEALALANLLRVTWK* |
Ga0066691_101943541 | 3300005586 | Soil | AILVFWLFLFENVSSAGTLVDQASTYMLLVNVGEALALANLLRVTWR* |
Ga0066903_1070373701 | 3300005764 | Tropical Forest Soil | ILVFWLVLFQNFESPTLGAFVDQASVYMLLVNLGEALALVNLLRVTWK* |
Ga0066658_103984313 | 3300006794 | Soil | LSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK* |
Ga0066665_101894211 | 3300006796 | Soil | FWLFLFQNVNVSSATALVDQASFYMLLVNIGEALAISNLLRVTWK* |
Ga0066665_109781442 | 3300006796 | Soil | SILVFWLFLFQNVNVSSATALVDQASFYMLLVNIGEALALSNLLRVTWK* |
Ga0066665_110116731 | 3300006796 | Soil | ILNLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK* |
Ga0066660_106935283 | 3300006800 | Soil | FFVILNLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK* |
Ga0079219_122103241 | 3300006954 | Agricultural Soil | PGNLDVSSATSLVDQASVYMLLVNIGEALALSNLLRITWK* |
Ga0099791_101634773 | 3300007255 | Vadose Zone Soil | FTMGLVLFGTFFVVLNLAILVFWLFLFENVSSAATLVDQASTYMLLVNVGEALAIANLLRVTWK* |
Ga0099793_105162662 | 3300007258 | Vadose Zone Soil | VLFGSFFVILNLSILVFWLFLFQNVNVSSATALVDQASSYMLLVNIGEALALSNLLRVTWK* |
Ga0099794_101351463 | 3300007265 | Vadose Zone Soil | SFTMGLVLFGTFFVVLNLAILVFWLFLFENVSSAGTLVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0066710_1027254823 | 3300009012 | Grasslands Soil | LNLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK |
Ga0066710_1028853842 | 3300009012 | Grasslands Soil | SFTLGLLLFSSFFVVLNLAILVFWLVLFQNFESPTLGAFVDQASVYMLLVNLGEALALVNLLRVTWK |
Ga0066710_1031133801 | 3300009012 | Grasslands Soil | SFFVMLNLAILVFWLVLFQNFESPILGAFVDQASVYMLLVNLGEALALVNLLRVTWK |
Ga0099829_100343471 | 3300009038 | Vadose Zone Soil | ILVFWLFLFQNVESAASFVDQASIYMLLVNLGEALALVNLLRVTWK* |
Ga0099829_109410712 | 3300009038 | Vadose Zone Soil | SFTLGLLLFGSFFVVLNLAILVFWVFLFLNFESATLGTFVDQASVYMLLVNVGEALALVNLLRVTWK* |
Ga0099829_110653362 | 3300009038 | Vadose Zone Soil | ILVFWIFLFQNVSSAANFVDQASIYMLLVNVGEALALANLLRVTWK* |
Ga0099828_105119282 | 3300009089 | Vadose Zone Soil | VSSAATFVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0099828_106725903 | 3300009089 | Vadose Zone Soil | FGSFFVVLNLAILVFWLFLFENVTSAATFVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0099828_108368323 | 3300009089 | Vadose Zone Soil | LFLFENVSSAGTLVDQASTYMLLVNVGEALALANLLRVTWR* |
Ga0099827_109000061 | 3300009090 | Vadose Zone Soil | NLAILVFWVFLFQSFVSGALGTFVDQASIYMLVVNVGEALALVNLLRVTWK* |
Ga0099827_111162461 | 3300009090 | Vadose Zone Soil | GLVLFGSFFVILNLSILVFWLFLFQNVNVSSATALVDQASSYMLLVNIGEALALSNLLRVTWK* |
Ga0099827_111639961 | 3300009090 | Vadose Zone Soil | GSFFVILNLSIIVFWLFLFQNVNVSSATALVDQASSYMLLVNIGEALALSNLLRVTWK* |
Ga0066709_10000044517 | 3300009137 | Grasslands Soil | MGLLLFGSFFVVLNLAILVFWLFLFENVGSAGSFVDQASVYMLLVNLGEALALANLLRVTWK* |
Ga0066709_1023223191 | 3300009137 | Grasslands Soil | VILNLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK* |
Ga0134088_106091052 | 3300010304 | Grasslands Soil | FVVLNLAILTFWLFLFQNVSSAASFVDQASVYMLLVNLGEMFALANLLRVTWK* |
Ga0134086_100095261 | 3300010323 | Grasslands Soil | LFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK* |
Ga0134063_100544621 | 3300010335 | Grasslands Soil | SSFTMGLVLFGTFFVVLNLAILVFWLFLFENVSSAGTLVDQAATYMLLVNVGEALALANLLRVTWK* |
Ga0134063_100634783 | 3300010335 | Grasslands Soil | VLFGSFFVILNLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK* |
Ga0137391_101337681 | 3300011270 | Vadose Zone Soil | AILVFWLFLFENVSSAANFVDQASAYMLLVNIGEALALANLLRVTWK* |
Ga0137391_103860663 | 3300011270 | Vadose Zone Soil | TMGLVLFGSFFVVLNLAILVFWLFLFENVTSAATFVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0137391_107326033 | 3300011270 | Vadose Zone Soil | SFFVVLNLAILVFWLFLFENVTSAATFVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0137389_105374661 | 3300012096 | Vadose Zone Soil | FFVVLNLAILVFWLFLFENVSSAANFVDQASAYMLLVNIGEALALANLLRVTWK* |
Ga0137365_105085743 | 3300012201 | Vadose Zone Soil | NLAILVFWLFLFENVSSAGTLVDQASTYMLLVNVGEALALGNLLRVTWK* |
Ga0137363_102097611 | 3300012202 | Vadose Zone Soil | LNLSILVFWLFLFQNVNVSSATALVDQASSYMLLVNIGEALALSNLLRVTWK* |
Ga0137399_100949491 | 3300012203 | Vadose Zone Soil | LGLVLFGSFFVILNLSILVFWLFLFQNVNVSSATALVDQASSYMLLVNIGEALALSNLLRVTWK* |
Ga0137399_105314893 | 3300012203 | Vadose Zone Soil | FGSFFVVLNLAILVFWLFLFQNVSSAATFVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0137399_106604793 | 3300012203 | Vadose Zone Soil | SFTMGLVLFGSFFVVLNLAILVFWLFLFENVTSAATFVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0137399_111318001 | 3300012203 | Vadose Zone Soil | MGLVLFGSFFVVLNLAILVFWLFLFENVSSAATFVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0137362_115113482 | 3300012205 | Vadose Zone Soil | VILNLSILVFWLFLFQNVNVSAATALVDQASLYMLLVNIGEALALSNLLRVTWK* |
Ga0137380_103797863 | 3300012206 | Vadose Zone Soil | VLNLAILGFWLFLYQNSAATLVDQASIYMLLINIGEALALANLLRVTWK* |
Ga0137380_115626551 | 3300012206 | Vadose Zone Soil | LVFWLFLFENVSSAGNFVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0137381_105215191 | 3300012207 | Vadose Zone Soil | VILNLSILVFWLFLFQNVNVSSATALVDQASFYMLLVNIGEALAISNLLRVTWK* |
Ga0137381_109061611 | 3300012207 | Vadose Zone Soil | FTMGLVLFGSFFVVLNLAILVFWLFLFQNVSSAATFVDQASTYMLLVNIGEALALVNLLRVTWK* |
Ga0137378_117912411 | 3300012210 | Vadose Zone Soil | LFLFENVSSAGNFVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0137377_102300521 | 3300012211 | Vadose Zone Soil | LVFWLFLFQNVNVSSATALVDQASFYMLLVNVGEALALSNLLRVTWK* |
Ga0137387_104202901 | 3300012349 | Vadose Zone Soil | ENVSSAGNFVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0137372_108251222 | 3300012350 | Vadose Zone Soil | FFVILNLSILVFWLFLFQNVNVSSATALVDQASFYMLLVNVGEALALSNLLRVTWK* |
Ga0137386_110094532 | 3300012351 | Vadose Zone Soil | GLVLFGAFFVVLNLAILVFWLFLYQNSAATLVDQASFYMLLVNVGEALALANLLRVTWK* |
Ga0137384_102353761 | 3300012357 | Vadose Zone Soil | GLLLFGSFFVVLNLAILVFWLVLFQNFESPTLGAFVDQASVYMLLVNVGEALALVNLLRVTWK* |
Ga0137385_102871313 | 3300012359 | Vadose Zone Soil | AILVFWLFLYQNSAATLVDQASFYMLLVNVGEALALANLLRVTWK* |
Ga0137390_107141051 | 3300012363 | Vadose Zone Soil | LFLFENVSSAGTLVDQASAYMLLVNVGEALALANLLRVTWK* |
Ga0137390_108927733 | 3300012363 | Vadose Zone Soil | FLFENVTSAATFVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0137416_117624262 | 3300012927 | Vadose Zone Soil | FVILNLSILVFWLFLFQNVNVSSATALVDQASSYMLLVNIGEALALSNLLRVTWK* |
Ga0137410_110618993 | 3300012944 | Vadose Zone Soil | FGSFFVVLNLAILVFWLFLFENVTSAATFVDQASTYMLLVNMGEALALANLLRVTWK* |
Ga0134077_101708413 | 3300012972 | Grasslands Soil | FFVILNLSILVFWLFLFQNVNVSSATALVDQASFYMLLVNIGEALALSNLLQGTWK* |
Ga0134077_102162573 | 3300012972 | Grasslands Soil | GTFFVVLNLAILVFWLFLFETVSSAGTLVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0134076_101066163 | 3300012976 | Grasslands Soil | VLNLAILVFWLVLFQNFESPTLGAFVDQASVYMLLVNLGEALALVNLLRVTWK* |
Ga0134087_103200991 | 3300012977 | Grasslands Soil | MGLLLFGSFFVVLNLAILVFWLFLFENVRSAGSFVDQASVYMLLVNLGEALA |
Ga0134081_100759061 | 3300014150 | Grasslands Soil | NVSSAGTLVDQAATYMLLVNVGEALALANLLRVTWK* |
Ga0134081_101498691 | 3300014150 | Grasslands Soil | NVSSAGTLVDQASTYMLLVNVGEALALANLLRVTWK* |
Ga0134075_100190374 | 3300014154 | Grasslands Soil | FTLGLVLFGSFFVVLNLSILVFWLFLFQNVNVSSATALVDQASFYMLLVNIGEALAISNLLRVTWK* |
Ga0134089_101015832 | 3300015358 | Grasslands Soil | MGLLLFGSFFVVLNLAILVFWLFLFENVRSAGSFVDQASVYMLLVNLGEALALANLLRVTWK* |
Ga0134089_103935482 | 3300015358 | Grasslands Soil | FFVVLNLAVLVFWLFLYQNSAAALVDQASFYMLLVNIGEALALANLLRVTWK* |
Ga0066655_101754441 | 3300018431 | Grasslands Soil | GLVLFGSFFVILNLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK |
Ga0066655_108209722 | 3300018431 | Grasslands Soil | FWLFLYQNSAAALVDQASFYMLLVNIGEALALANLLRVTWK |
Ga0066667_120242961 | 3300018433 | Grasslands Soil | LFQNVNVSSATALVDQASLYMLLVNIGEALALSNLLRVTWK |
Ga0066662_111356161 | 3300018468 | Grasslands Soil | LVLFGSFFVILNLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK |
Ga0209109_102845701 | 3300025160 | Soil | FWLFLFQNVSAAAQFVEQASFYMLLVNLGEALAIANLLRVTWK |
Ga0209431_107025781 | 3300025313 | Soil | ILVFWLFLFQNFGSAQLGSFVEQASLYMFFVNLGEALALANLLRVTWK |
Ga0207646_103655603 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | VSSAATFVDQASTYMLLVNIGEALALVNLLRVTWK |
Ga0209237_11614411 | 3300026297 | Grasslands Soil | AILVFWLFLFENVSSAGTLVDQASTYMLVVNVGEALALANLLRVTWK |
Ga0209236_10178331 | 3300026298 | Grasslands Soil | GLLLFGSFFVVLNLAILVFWLFLFQNVESAASFVDQASVYMLLVNLGEALALANLLRVTW |
Ga0209236_12412091 | 3300026298 | Grasslands Soil | NLSILVFWLFLFQNTNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK |
Ga0209469_10507103 | 3300026307 | Soil | ILVFWLFLFQNVNVSSATALVDQASFYMLLVNVGEALALSNLLRVTWK |
Ga0209155_10127925 | 3300026316 | Soil | VLNLAILVFWLFLFENVSSAGTLVDQASTYMLLVNVGEALALANLLRVTWK |
Ga0209154_10011611 | 3300026317 | Soil | NLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK |
Ga0209471_11920341 | 3300026318 | Soil | TLGLVLFGSFFVILNLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRITWK |
Ga0209375_11273323 | 3300026329 | Soil | LSILVFWLFLFQNVNVSSATALVDQASFYMLLVNVGEALALSNLLRVTWK |
Ga0257181_10366521 | 3300026499 | Soil | FGSFFVVLNLAILVFWLFLFENVTSAATFVDQASTYMLLVNVGEALALANLLRVTWK |
Ga0209690_12682772 | 3300026524 | Soil | FTMGLVLFGMFFVVLNLAILVFWLFLYQNSAVALVDQASFYMLLVNIGEALALANLLRVTWK |
Ga0209378_12093612 | 3300026528 | Soil | FVILNLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK |
Ga0209378_12522361 | 3300026528 | Soil | LFLFQNVNVSSATALVDQASFYMLLVNIGEALALSNLLRVTWK |
Ga0209378_13039181 | 3300026528 | Soil | FVVLNLAILVFWLFLYQNSAAALVDQASFYMLLVNIGEALALANLLRVTWK |
Ga0209160_11969583 | 3300026532 | Soil | GLVLFGSFFVILNLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRITWK |
Ga0209056_104470103 | 3300026538 | Soil | VILNLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK |
Ga0209056_105074411 | 3300026538 | Soil | NLAILVFWLFLFENVSSAGTLVDQASTYMLLVNVGEALALANLLRVTWR |
Ga0209376_10939173 | 3300026540 | Soil | AILVFWLFLYQNSAAALVDQASFYMLLVNIGEALALANLLRVTWK |
Ga0209376_11916103 | 3300026540 | Soil | SFTLGLVLFGSFFVILNLSILVFWLFLFQNVNVSSATALVDQASFYMLLVNIGEALALSNLLRVTWK |
Ga0209388_10716511 | 3300027655 | Vadose Zone Soil | SFTMGLVLFGSFFVVLNLAILVFWLFLFENVTSAATFVDQASTYMLLVNVGEALALANLLRVTWK |
Ga0209580_100049831 | 3300027842 | Surface Soil | LFLYQNSAAPLVDQASAYMLLINIGEAFALSNLLRVTWK |
Ga0209180_106922081 | 3300027846 | Vadose Zone Soil | FFVILNLSIIVFWLFLFQNVNVSSATALVDQASSYMLLVNIGEALALSNLLRVTWK |
Ga0209283_100425544 | 3300027875 | Vadose Zone Soil | ENVTSAATFVDQASTYMLLVNVGEALALANLLRVTWK |
Ga0307471_1013060021 | 3300032180 | Hardwood Forest Soil | VLFGSFFVVLNLAILVFWLFLFENVSSAANFVDQASTYMLLVNVGEALALANLLRVTWK |
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