Metagenome / Metatranscriptome Family F078494

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078494
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	46 residues
Representative Sequence	MNRRTFIGTSIAATLANAAKPAWAADSAHTIDRVGLQLYTVRD
Number of Associated Samples	86
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	92.24 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	87.93 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (99.138 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (56.897 % of family members)
Environment Ontology (ENVO)	Unclassified (50.862 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (58.621 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88. 1JGI25385J37094_100974912 2Ga0058889_14041171 3Ga0066674_102413621 4Ga0066674_105652131 5Ga0066680_105288282 6Ga0070709_108182022 7Ga0070708_1017130141 8Ga0066708_109178222 9Ga0066691_102508202 10Ga0066691_107930921 11Ga0075023_1004971771 12Ga0075019_100769091 13Ga0066658_104295081 14Ga0099793_104438952 15Ga0099793_105012302 16Ga0099794_100397743 17Ga0099794_105432452 18Ga0099829_113766832 19Ga0099829_116787152 20Ga0099830_101131252 21Ga0099827_106386241 22Ga0099827_112714902 23Ga0126380_114276132 24Ga0099796_100858521 25Ga0134063_101430632 26Ga0126372_102880991 27Ga0126372_103267761 28Ga0126379_103494681 29Ga0150983_131982032 30Ga0150983_158508092 31Ga0137391_105348511 32Ga0137389_113511701 33Ga0137388_110938832 34Ga0137388_120490302 35Ga0137383_100455242 36Ga0137363_102934251 37Ga0137399_100444452 38Ga0137399_115516971 39Ga0137362_100306802 40Ga0137362_102609622 41Ga0137362_107397123 42Ga0137362_111353982 43Ga0137380_106713672 44Ga0137381_102314931 45Ga0137379_105018362 46Ga0137377_104847623 47Ga0137360_100217363 48Ga0137361_107015891 49Ga0137361_107236511 50Ga0137358_109368382 51Ga0137397_108197991 52Ga0137396_106421311 53Ga0137396_110225531 54Ga0137394_104200921 55Ga0137394_107590362 56Ga0137394_115394351 57Ga0137359_101525801 58Ga0137359_111909772 59Ga0137359_112770161 60Ga0137419_100238821 61Ga0137416_106879662 62Ga0137416_121206262 63Ga0137416_121794132 64Ga0137404_107427251 65Ga0137404_113431692 66Ga0137404_114199771 67Ga0137407_110162242 68Ga0137414_12311901 69Ga0137411_12579951 70Ga0137418_103246341 71Ga0137418_104290151 72Ga0137412_104733001 73Ga0137403_113175302 74Ga0179590_11364583 75Ga0179590_11978281 76Ga0179592_102578151 77Ga0210407_104827042 78Ga0210403_114046532 79Ga0210401_106846352 80Ga0179596_101295622 81Ga0210404_104132511 82Ga0210400_112911401 83Ga0210408_108233442 84Ga0210394_101304761 85Ga0210384_112206492 86Ga0210410_112684201 87Ga0210409_100291303 88Ga0210409_101408933 89Ga0210409_102591802 90Ga0179589_100997681 91Ga0209838_10145012 92Ga0209438_11718401 93Ga0209131_12984051 94Ga0257176_10376061 95Ga0257158_10304902 96Ga0209059_13285942 97Ga0209056_103165511 98Ga0209648_100457321 99Ga0209648_107793412 100Ga0207948_10181472 101Ga0209179_10253761 102Ga0209009_11476052 103Ga0209588_12612961 104Ga0209180_100585442 105Ga0209180_103366011 106Ga0209180_105942712 107Ga0209590_110160631 108Ga0209488_101452331 109Ga0209698_111853152 110Ga0137415_106367532 111Ga0073994_124009761 112Ga0307469_108645452 113Ga0307477_109831591 114Ga0307475_113525672 115Ga0307471_1007280661 116Ga0307472_1019198082
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88. 1JGI25385J37094_100974912 2Ga0058889_14041171 3Ga0066674_102413621 4Ga0066674_105652131 5Ga0066680_105288282 6Ga0070709_108182022 7Ga0070708_1017130141 8Ga0066708_109178222 9Ga0066691_102508202 10Ga0075019_100769091 11Ga0066658_104295081 12Ga0099793_104438952 13Ga0099793_105012302 14Ga0099830_101131252 15Ga0099827_106386241 16Ga0126380_114276132 17Ga0126372_102880991 18Ga0126372_103267761 19Ga0126379_103494681 20Ga0137388_110938832 21Ga0137383_100455242 22Ga0137399_115516971 23Ga0137358_109368382 24Ga0137396_106421311 25Ga0137359_111909772 26Ga0137419_100238821 27Ga0137404_107427251 28Ga0137411_12579951 29Ga0137412_104733001 30Ga0179590_11978281 31Ga0210407_104827042 32Ga0210403_114046532 33Ga0210401_106846352 34Ga0210409_101408933 35Ga0209838_10145012 36Ga0209131_12984051 37Ga0209180_103366011 38Ga0209590_110160631 39Ga0209698_111853152 40Ga0307469_108645452
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42. 1Ga0137404_113431692 2JGI25385J37094_100974912 3Ga0058889_14041171 4Ga0066674_102413621 5Ga0066674_105652131 6Ga0066680_105288282 7Ga0070709_108182022 8Ga0075019_100769091 9Ga0099793_105012302 10Ga0099829_113766832 11Ga0126380_114276132 12Ga0134063_101430632 13Ga0126372_102880991 14Ga0126379_103494681 15Ga0150983_131982032 16Ga0137388_110938832 17Ga0137383_100455242 18Ga0137363_102934251 19Ga0137362_111353982 20Ga0137380_106713672 21Ga0137377_104847623 22Ga0137358_109368382 23Ga0137397_108197991 24Ga0137396_110225531 25Ga0137394_115394351 26Ga0137359_111909772 27Ga0137359_112770161 28Ga0137416_106879662 29Ga0179592_102578151 30Ga0210407_104827042 31Ga0210403_114046532 32Ga0210401_106846352 33Ga0210400_112911401 34Ga0210394_101304761 35Ga0210409_101408933 36Ga0179589_100997681 37Ga0209838_10145012 38Ga0209438_11718401 39Ga0257176_10376061 40Ga0257158_10304902 41Ga0209056_103165511 42Ga0209648_107793412 43Ga0209180_103366011 44Ga0209590_110160631 45Ga0209698_111853152 46Ga0307475_113525672 47Ga0307472_1019198082
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 26.76% β-sheet: 0.00% Coil/Unstructured: 73.24%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF01425	Amidase	10.34
PF13517	FG-GAP_3	4.31
PF13620	CarboxypepD_reg	3.45
PF13377	Peripla_BP_3	2.59
PF07593	UnbV_ASPIC	1.72
PF02803	Thiolase_C	0.86
PF13432	TPR_16	0.86

Showing 1 to 7 of 7 entries

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COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	10.34
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.86

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.14 %
Unclassified	root	N/A	0.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.14 %
Unclassified	root	N/A	0.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.14 %
Unclassified	root	N/A	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	31.03 %
Unclassified	root	N/A	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.45 %
Unclassified	root	N/A	0.86 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	18.10 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.10 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.45 %
Unclassified	root	N/A	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.10 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.45 %
Unclassified	root	N/A	0.86 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10097491	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300004136\|Ga0058889_1404117	All Organisms → cellular organisms → Bacteria	1884	Open in IMG/M
3300005166\|Ga0066674_10241362	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300005166\|Ga0066674_10565213	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300005174\|Ga0066680_10528828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M
3300005434\|Ga0070709_10818202	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300005445\|Ga0070708_101713014	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300005576\|Ga0066708_10917822	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300005586\|Ga0066691_10250820	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1039	Open in IMG/M
3300005586\|Ga0066691_10793092	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M

Showing 1 to 10 of 116 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	2.59%
Terrestrial	Environmental → Terrestrial	97.41%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Sediment	2.59%
Soil	Environmental → Terrestrial → Soil	97.41%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	6.03%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.86%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.07%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	61.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.59%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	56.90%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.59%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300004136	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF214 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M

Showing 1 to 10 of 86 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_100974912	3300002558	Grasslands Soil	MRRMNRRTFIGTSIAATLAAAAKPSWAPEAAHKIDRIGLQLYTVRDAMKTDFE
Ga0058889_14041171	3300004136	Forest Soil	MNRRTFIGTSIAATLATAARPIWADDDTHNIDRVGIQLYTVRKAMRKE
Ga0066674_102413621	3300005166	Soil	MQPMIRRTFIATSIAASFAATANPDCAPDTAHLAGRSPVAHAIDRVG
Ga0066674_105652131	3300005166	Soil	MPPMNRRTFIGASVAATLSAAAKPAWAADSAHQIDRIGLQLYTVR
Ga0066680_105288282	3300005174	Soil	MRLMNRRTFISTSIAAALTTSRTSLAADTAHHIDRVGVQLYTV
Ga0070709_108182022	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNRRTFIGTSIAATLAASRPSWAAETHIKRVGLQLYTVRDLMKK
Ga0070708_1017130141	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRGMNRRTFIGTSIAAAVAASRPAWPAETHHIKRVGLQLYTV
Ga0066708_109178222	3300005576	Soil	MPPMNRRTFIGTSVAATLAAAAKPAWAADTAHLAGRFPAAHSIDRVGLQLYTVRDAMKTDVEGTIAKVA
Ga0066691_102508202	3300005586	Soil	MRAMNRRTFIGTSIAATLAAAAKPSWAADSAHHID
Ga0066691_107930921	3300005586	Soil	MRRMNRRTFISTSIAASVVASRPSWAAETAHHIGRVGLQLYTVRDAMKTDFEG
Ga0075023_1004971771	3300006041	Watersheds	MRAMNRRTFIGTSIAAAVAASRPAWPAETHPIERVGLQLY
Ga0075019_100769091	3300006086	Watersheds	MRAMNRRTFIGATICTSVAAAISATRPSWAADETHRIDRIGLQLYTVRKAMK
Ga0066658_104295081	3300006794	Soil	MRPMNRRTFIGTSIAAALTASRSSWAADTAHSIDRVGLQLYTVREAMKSDFE
Ga0099793_104438952	3300007258	Vadose Zone Soil	MNRRTFISTSVAATFATAARPSWAADSAHKIDRIGVQLYTVRDAMK
Ga0099793_105012302	3300007258	Vadose Zone Soil	MNRRTFIGTSIAATLAATTKPSWAAGTAHHVDRSAVAHSIDRVGLQLYTVRDAMKT
Ga0099794_100397743	3300007265	Vadose Zone Soil	MPPMNRRTFIGTSIAATLVAAAKPSWAADTAHHID
Ga0099794_105432452	3300007265	Vadose Zone Soil	MNRRTFISTSIAATLATAARPSWAADSAHKIDRIGVQLYTVRDAMKTDFE
Ga0099829_113766832	3300009038	Vadose Zone Soil	MNRRTFIGTSIAATLAAAAKPSWAADTARNVDGSAVAHSIDRIGLQLYTVRAAM
Ga0099829_116787152	3300009038	Vadose Zone Soil	MPRMNRRTFIGTSIAATLATAAKPAWAADSAHSIDSIGLQLYTVRDAMKTDFEGT
Ga0099830_101131252	3300009088	Vadose Zone Soil	MNRRTFIGTSIAATLAAAAKPAWAADTAHSIGRVGLQLYTVREAMKTDFEGTIAK
Ga0099827_106386241	3300009090	Vadose Zone Soil	MNRRTFIGTSIAATLAAAAEPAWAADATHKIDRIGLQLYT
Ga0099827_112714902	3300009090	Vadose Zone Soil	MNRRTFIGTSIAATLATAAKPSWAADSTHHIDRVGVQLYTVRDA
Ga0126380_114276132	3300010043	Tropical Forest Soil	MNRRTFIETSFAAAVVASRPTWAADAAHRINPVGLQLYTVREFMKQDFDG
Ga0099796_100858521	3300010159	Vadose Zone Soil	MRSMNRRTFIGTSIAAALAASRPAWAAERHQIDRIGLQLYTVR
Ga0134063_101430632	3300010335	Grasslands Soil	MNRRTFIGTSVAATLTAAAKPAWAADTAHLAGRSPVAHAIDRVGLQLYTVRDAMKTD
Ga0126372_102880991	3300010360	Tropical Forest Soil	MNRRTFIGSSLAALFTDAVRPAWAAVSMHKIERIGLQLYTVRDAMKTD
Ga0126372_103267761	3300010360	Tropical Forest Soil	MQRMNRRKFIGTSIAASLTAARPAWAAGSTHKIER
Ga0126379_103494681	3300010366	Tropical Forest Soil	MQRMNRRKFIGTSLAASLTAAARPAWAAGSMHKIQRIGLQLYT
Ga0150983_131982032	3300011120	Forest Soil	MRGMNRRTFIGTSIAAAVAASRPAWSAETHHIAPIGLQLYTVRELMKKD
Ga0150983_158508092	3300011120	Forest Soil	MNRRTFIGTSIAATLATAAEPSWAADSAHHIDRVGIQL
Ga0137391_105348511	3300011270	Vadose Zone Soil	MRSMNRRTFIGTSIAAAVAASRPVWAAERHQIDRVGLQLYTVRDLMKSDF
Ga0137389_113511701	3300012096	Vadose Zone Soil	MPRMNRRTFIGTSIAVTLAAAAKPFWAAEAAHKIDRIGLQLYTVREAMKTDFEGTIA
Ga0137388_110938832	3300012189	Vadose Zone Soil	MNRRTFIGTSIATAVVASRYAWAVEAHHIERVGLQLYTVRDFMK
Ga0137388_120490302	3300012189	Vadose Zone Soil	MPPMNRRTFIGTSIAATLAASAKPAWAADTTHNIDR
Ga0137383_100455242	3300012199	Vadose Zone Soil	MRRMNRRTFIGTSIAATFAAAAKPAWAADTAHSVGRFA
Ga0137363_102934251	3300012202	Vadose Zone Soil	MPRMNRRTFIGTSIAATLATAAKPAWAADSAHSIDSIGLQL
Ga0137399_100444452	3300012203	Vadose Zone Soil	MRGMNRRTFIGTSIAAAVAASRPAWPAETHHIKRVGLQLYTVRDLM
Ga0137399_115516971	3300012203	Vadose Zone Soil	MNRRTFIGTSIGASLAAAAKPSWAADTARNVDRSAVAHSIDRVGL
Ga0137362_100306802	3300012205	Vadose Zone Soil	MNRRTFIGTSVAATLATAARPSWAADSAHKIDRIGVQLYTVRDAMKTDFEGT
Ga0137362_102609622	3300012205	Vadose Zone Soil	MNRRTFIGTSIAATLAASRPSWASDSAHKIDRIGVQLYTVRDAMKTDF
Ga0137362_107397123	3300012205	Vadose Zone Soil	MPPMNRRTFIGTSIAATLAASAKPAWAADTTHNIDRV
Ga0137362_111353982	3300012205	Vadose Zone Soil	MRAMNRRTFIATSIAAAVAGTRPAWSAETFHIDRVGLQLYTVR
Ga0137380_106713672	3300012206	Vadose Zone Soil	MNRRTFIGTSIAASLASAAKPSWAADSAHHIDRIGVQLYTVRDAMK
Ga0137381_102314931	3300012207	Vadose Zone Soil	MNRRTFIGTSIAASLAPAAKPSWAADSAHRVDRSAVAHSIDRIGVQLY
Ga0137379_105018362	3300012209	Vadose Zone Soil	MRRMNRRTFIGTSIAATFAAAAKPAWAADTAHSAGRS
Ga0137377_104847623	3300012211	Vadose Zone Soil	MNRRTFIGTSVAVTLAAAAKPAWAADTVHHIDRVGVQLYTVRDAMK
Ga0137360_100217363	3300012361	Vadose Zone Soil	MPRMNRRTFIGTSIAATLATAAKPAWAADSAHSIDSIGLQLYTVR
Ga0137361_107015891	3300012362	Vadose Zone Soil	MNRRTFIGTSIAATLAASRPSWASDSAHKIDRIGVQLYTVRDAMKTDFE
Ga0137361_107236511	3300012362	Vadose Zone Soil	MPLMNRRTFIGTSIAATLAASRPSWAADSPHKIDRIGVQLYTVRDAMKTD
Ga0137358_109368382	3300012582	Vadose Zone Soil	MNRRTFISNSIAATPAPSSKPSWAADTAHHIDRVGVQLYTVRDAMKTDFE
Ga0137397_108197991	3300012685	Vadose Zone Soil	MNRRTFIGTSVAATLATAARPSWASDSAHKIDRIGVQLYTVRDAMKTDFE
Ga0137396_106421311	3300012918	Vadose Zone Soil	MNRRTFIGTSIAATLAAAAKPSWAADSTYYVDPGPAGVAHSIDRIGLQLYT
Ga0137396_110225531	3300012918	Vadose Zone Soil	MNRRTFIGTSIAATLAASRPSWAADSAHKIERSDLQLYTVRGAMKTDFEGTIAKVA
Ga0137394_104200921	3300012922	Vadose Zone Soil	MNRRTFISTSIAATLAASRPSWASDSAHKIDRIGVQLYTV
Ga0137394_107590362	3300012922	Vadose Zone Soil	MRRMNRRTFISTSIAATLATAARPSWAADSAHKIDRIGVQLY
Ga0137394_115394351	3300012922	Vadose Zone Soil	MNRRTFIGTSIAATVAASRPSWAADTAHHIERIGVQLYTVRDAMKTDFEGTI
Ga0137359_101525801	3300012923	Vadose Zone Soil	MPLMNRRTFIGSSIAATLATAAKPAWAADSAHNIDRIGLQ
Ga0137359_111909772	3300012923	Vadose Zone Soil	MNRRAFIGTSIAASLAAAAKPSWAADTVHHIDRVGVQ
Ga0137359_112770161	3300012923	Vadose Zone Soil	MRGMNRRTFIGASIAAAVAASRPAWPAETHHIKRVGLQLYTVRDLMKKDFEGTV
Ga0137419_100238821	3300012925	Vadose Zone Soil	MPPMNRRTFIGSSIAATLATAAKPAWAADSAHHVDRSAV
Ga0137416_106879662	3300012927	Vadose Zone Soil	MNRRTFIGTSISATLAAAAKPSWAADTAHHIDRVGVQLYTVRDAMKT
Ga0137416_121206262	3300012927	Vadose Zone Soil	MNRRTFIGTSITATLAAAAKPSWAADTVHHIDRVGVQL
Ga0137416_121794132	3300012927	Vadose Zone Soil	MNRRTFIGTSVAATLAAAAKPSWAADTAHHIDRVGVQLYTVRDAM
Ga0137404_107427251	3300012929	Vadose Zone Soil	MRSMNRRTFIGASIAAAVAASRPAWAAERHQIDRVGLQLYTVRDLMKSDFDG
Ga0137404_113431692	3300012929	Vadose Zone Soil	MNRRTFIGTSIAATLANAAKPAWAADSAHTIDRVGLQLYTVRD
Ga0137404_114199771	3300012929	Vadose Zone Soil	MNRRTFIGTSVAATLATAARPSWASDSAHKIDRIGVQLYTVRDAMKTD
Ga0137407_110162242	3300012930	Vadose Zone Soil	MNRRTFIGTSIGAALAASRPAWAAERHQIDRIGLQLYTVRDLM
Ga0137414_12311901	3300015051	Vadose Zone Soil	MNRRTFIGTSIAASLAAAAKPSWAADTARNVDRSAATH
Ga0137411_12579951	3300015052	Vadose Zone Soil	MNRRTFIGTSIAATLATAAEPTAAEPSWAADSTHHIDRVGI
Ga0137418_103246341	3300015241	Vadose Zone Soil	MNRRTFIGTSITATLAAAAKPSWAADTVHHINRVGVQLYTVR
Ga0137418_104290151	3300015241	Vadose Zone Soil	MNRRTFIGTSVAAALAASRPAWAAERHQIDRIGLQLY
Ga0137412_104733001	3300015242	Vadose Zone Soil	MRSMNRRTFIGTSIAAALAASRPAWAAERHQIDRIGL
Ga0137403_113175302	3300015264	Vadose Zone Soil	MRGMNRRTFIGTSIAAAVAASRPAWPAETHIKRVGLQLYTVRDLMKNDFEGTVAKV
Ga0179590_11364583	3300020140	Vadose Zone Soil	MRSMNRRTFIGTSIAATVAAARPAWAAERHQIDRVGLQLYTVRDLM
Ga0179590_11978281	3300020140	Vadose Zone Soil	MPPMNRRTFIGTSVAATLAAARPSWAADAAHHIDRVGLQL
Ga0179592_102578151	3300020199	Vadose Zone Soil	MNRRTFIGTSIAATLAAAAEPAWAADATHKIDRIGLQLYTV
Ga0210407_104827042	3300020579	Soil	MRPMNRRTFIGTSIAASLATAAKPAWAADSAHHIDRVGIQLYTVRAAMKT
Ga0210403_114046532	3300020580	Soil	MNRRSFISTSIAATLAAAAKPAWAADTAHSIDRVGIQLYTVRGTM
Ga0210401_106846352	3300020583	Soil	MNRRTFIERSFAATVVAASRPIWATAATHHIDRVGLQLYTVRELLKQDF
Ga0179596_101295622	3300021086	Vadose Zone Soil	MPPMNRRTFIGTSVAATLAAARPSWAADAAHHIDRVGLQLYTVRD
Ga0210404_104132511	3300021088	Soil	MNRRTFIGTSIAATLAAAAKPAWAADSAHSIDRVGLQLYTVRDAMKTDFE
Ga0210400_112911401	3300021170	Soil	MNRRTFIGTSIAATLATAAKPAWAADTTHHIDRVGLQLYAVRDTMKTDF
Ga0210408_108233442	3300021178	Soil	MNRRTFIGTSVAAAVAASRPAWPAETHHIDRVGLQLYTVRDLMKNDFE
Ga0210394_101304761	3300021420	Soil	MNRRTFIGTSVAATLATAARSAWAADTVHKIDRVGLQLYTVRANMKTDFEGTI
Ga0210384_112206492	3300021432	Soil	MNRRTFIERSFAATVVAASRPIWATAATHHIDRVGLQLYTVRELLKQ
Ga0210410_112684201	3300021479	Soil	MNRRTFIERSFAATVVAASRPIWATAATHHIDRVGLQLYTVREILKQD
Ga0210409_100291303	3300021559	Soil	MNRRSFISTSIAATLAAAAKPAWAADTAHSIDRVG
Ga0210409_101408933	3300021559	Soil	MNRRTFVQSSIAAALLADWPAVPARRIDPIGLQLYTVRFAL
Ga0210409_102591802	3300021559	Soil	MRAMNRRTFIGTSIAATLATAAKPAWAADSAHHIDRVGIQLYTVREAMK
Ga0179589_100997681	3300024288	Vadose Zone Soil	MPPMNRRTFIGTSVAATLAAARPSWAADAAHHIDRVVLQLYTVRDAMKTDFEGTIAK
Ga0209838_10145012	3300026214	Soil	MRRMNRRTFIGRSIAAYLMASRTSWAAEGTHKLERIGMQLYTVRELMKKDFEGTLA
Ga0209438_11718401	3300026285	Grasslands Soil	MNRRTFIGTSIAAAVAASRPAWAAERHQIDRIGLQLYTVRD
Ga0209131_12984051	3300026320	Grasslands Soil	MPPMNRRTFIGTSIAATLANATKPAWAADSAHHVDRSAVAHFIDRIGLQLYTV
Ga0257176_10376061	3300026361	Soil	MNRRTFISTSIAASVVASRPSWAADAAHHIDRVGLQLYTVRDAMKTDFEGTIA
Ga0257158_10304902	3300026515	Soil	MNRRTFIGTSIAATLATAAESSWAADSAHHIDRVGLQLYTVRDAMR
Ga0209059_13285942	3300026527	Soil	MPPMNRRTFIGTSVAATLAAAAKPAWAADTAHLAGRSPVAHAIDRVGLQLYTVRDA
Ga0209056_103165511	3300026538	Soil	MRPMNRRTFIGTSIAAALTASRSSWAADTAHSIDRVGLQLYTVRDAMKSD
Ga0209648_100457321	3300026551	Grasslands Soil	MPPMNRRTFIGTSISATLAAAAKPSWAADTAHHIDRVGVQLYTVRDAMKTDFEG
Ga0209648_107793412	3300026551	Grasslands Soil	MPAMNRRTFIGTSIAATLAAGAKPSWGADTHHIDRVGLQLYTVRDAMKTDFEG
Ga0207948_10181472	3300027174	Forest Soil	MNRRSFIGTSIAATLAAAAKPAWAADTAHNIDRVGIQLYTVRGTMKTDFEGTI
Ga0209179_10253761	3300027512	Vadose Zone Soil	MNRRTFIGTSIGAALAASRPAWAAERHQIDRIGLQLYTV
Ga0209009_11476052	3300027667	Forest Soil	MRAMNRRTFIGTSIAAAVAASRPAWPAETHHIDRVGLQLYTVRDLMKK
Ga0209588_12612961	3300027671	Vadose Zone Soil	MPPMNRRTFIGTSIAATLATAAKPSWGADTHHIDRVGLQLYTVRD
Ga0209180_100585442	3300027846	Vadose Zone Soil	MRAMNRRTFIGTSIAAAVAASRPAWPAETHRIERIGLQLYTVRDLMK
Ga0209180_103366011	3300027846	Vadose Zone Soil	MPPMNRRAFISASVAAALAASRPSWASEPRHSLDRIGVQLYTVRAAMESDF
Ga0209180_105942712	3300027846	Vadose Zone Soil	MRAMNRRTFIGTSIAAAVATSRPAWPAETHSIERVGLQLYTVRDLMK
Ga0209590_110160631	3300027882	Vadose Zone Soil	MPPMNRRTFIGTSIAASLAAAAKPSWAADTGHHVDRSAVAHSIDSIGLQLYT
Ga0209488_101452331	3300027903	Vadose Zone Soil	MRSMNRRTFIGTSIAATVAASRPAWPAAAHHIAPIGLQLYTVRE
Ga0209698_111853152	3300027911	Watersheds	MRAMNRRTFIGTTISTSVAAALAASKSSWAADATHHLDRIGVQLY
Ga0137415_106367532	3300028536	Vadose Zone Soil	MNRRTFIGTSVAATLVASRPSWAADSAHKIERIGVQLYTVRDSMKTD
Ga0073994_124009761	3300030991	Soil	MPPMNRRTFIGTSISATLAAAAKPSWAADTAHHIDRVGVQ
Ga0307469_108645452	3300031720	Hardwood Forest Soil	MNRRTFIGTSIAATLAASRPSWASDSAHKIDRIGV
Ga0307477_109831591	3300031753	Hardwood Forest Soil	MNRRTFIGTSIAAAVAASRPAWTAETHHIDRVGLQLYTVRDLMKTDFDG
Ga0307475_113525672	3300031754	Hardwood Forest Soil	MNRRTFIGTSIAATLATAAKPSWAADSGHMIDRVGIQLYTVRDAMKTD
Ga0307471_1007280661	3300032180	Hardwood Forest Soil	MRAMNRRTFIGTSIAAAVAASRPAWPAETHHIGRVGLQLYTVRDLMKNDFEGTI
Ga0307472_1019198082	3300032205	Hardwood Forest Soil	MRAMNRRTFIGTSIAAAVAASRPAWPTETHPIDHVGLQLYTVRDL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters