Metagenome Family F078444

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078444
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	50 residues
Representative Sequence	MTTHSSERVLTEQTQEEIIEIDENGVVHAVGYTPQDLKSTVLRDPEGEY
Number of Associated Samples	99
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	93.10 %
% of genes near scaffold ends (potentially truncated)	18.10 %
% of genes from short scaffolds (< 2000 bps)	71.55 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.966 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (30.172 % of family members)
Environment Ontology (ENVO)	Unclassified (33.621 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.241 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 9.09% β-sheet: 7.79% Coil/Unstructured: 83.12%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00899	ThiF	17.24
PF00753	Lactamase_B	12.07
PF12706	Lactamase_B_2	7.76
PF14461	Prok-E2_B	6.03
PF01381	HTH_3	1.72
PF06114	Peptidase_M78	1.72
PF16576	HlyD_D23	0.86
PF13683	rve_3	0.86
PF01726	LexA_DNA_bind	0.86
PF13345	Obsolete Pfam Family	0.86
PF13604	AAA_30	0.86
PF13432	TPR_16	0.86
PF01494	FAD_binding_3	0.86
PF00795	CN_hydrolase	0.86
PF07015	VirC1	0.86
PF08240	ADH_N	0.86
PF00436	SSB	0.86
PF13487	HD_5	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.72
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.86
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	0.86
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.86
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.86
COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	Cell cycle control, cell division, chromosome partitioning [D]	0.86
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.83 %
Unclassified	root	N/A	30.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.83 %
Unclassified	root	N/A	30.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.97 %
Unclassified	root	N/A	30.17 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	16.38 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	9.48 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %
Asgard group	clade	All Organisms → cellular organisms → Archaea → Asgard group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.17 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	9.48 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7.76 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.72 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %
Asgard group	clade	All Organisms → cellular organisms → Archaea → Asgard group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.17 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	9.48 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7.76 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %
Asgard group	clade	All Organisms → cellular organisms → Archaea → Asgard group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.17 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	9.48 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7.76 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	1.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %
Asgard group	clade	All Organisms → cellular organisms → Archaea → Asgard group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.17 %
Candidatus Parcubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria	9.48 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7.76 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	1.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %
Asgard group	clade	All Organisms → cellular organisms → Archaea → Asgard group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.17 %
unclassified Parcubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria	9.48 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7.76 %
Microcoleaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae	1.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %
Asgard group	clade	All Organisms → cellular organisms → Archaea → Asgard group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.17 %
Candidatus Parcubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	9.48 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7.76 %
Planktothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Planktothrix	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %
Asgard group	clade	All Organisms → cellular organisms → Archaea → Asgard group	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0924098	All Organisms → cellular organisms → Bacteria	1525	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100692843	All Organisms → cellular organisms → Bacteria	4270	Open in IMG/M
3300002909\|JGI25388J43891_1063052	Not Available	560	Open in IMG/M
3300002914\|JGI25617J43924_10023289	All Organisms → cellular organisms → Bacteria	2159	Open in IMG/M
3300004092\|Ga0062389_104736788	Not Available	512	Open in IMG/M
3300005180\|Ga0066685_11160697	Not Available	502	Open in IMG/M
3300005187\|Ga0066675_10966340	Not Available	641	Open in IMG/M
3300005295\|Ga0065707_10478912	Not Available	775	Open in IMG/M
3300005450\|Ga0066682_10148334	All Organisms → cellular organisms → Bacteria	1492	Open in IMG/M
3300005467\|Ga0070706_100420257	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	1244	Open in IMG/M
3300005471\|Ga0070698_100128794	All Organisms → cellular organisms → Bacteria	2487	Open in IMG/M
3300005471\|Ga0070698_100180117	All Organisms → cellular organisms → Bacteria	2052	Open in IMG/M
3300005531\|Ga0070738_10229343	Not Available	825	Open in IMG/M
3300005541\|Ga0070733_10000054	All Organisms → cellular organisms → Bacteria	112238	Open in IMG/M
3300005542\|Ga0070732_10051426	All Organisms → cellular organisms → Bacteria	2381	Open in IMG/M
3300005591\|Ga0070761_10701719	All Organisms → cellular organisms → Bacteria → Terrabacteria group	633	Open in IMG/M
3300005764\|Ga0066903_103420975	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300006052\|Ga0075029_100947090	Not Available	592	Open in IMG/M
3300006162\|Ga0075030_101643812	Not Available	502	Open in IMG/M
3300006797\|Ga0066659_11508425	Not Available	563	Open in IMG/M
3300006845\|Ga0075421_102243441	Not Available	575	Open in IMG/M
3300006954\|Ga0079219_11255005	Not Available	647	Open in IMG/M
3300007258\|Ga0099793_10005352	All Organisms → cellular organisms → Bacteria	4638	Open in IMG/M
3300007258\|Ga0099793_10684013	Not Available	517	Open in IMG/M
3300007265\|Ga0099794_10219545	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	976	Open in IMG/M
3300007982\|Ga0102924_1001038	All Organisms → cellular organisms → Bacteria	32801	Open in IMG/M
3300009012\|Ga0066710_101733133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	948	Open in IMG/M
3300009012\|Ga0066710_104783918	All Organisms → cellular organisms → Bacteria → Terrabacteria group	506	Open in IMG/M
3300009088\|Ga0099830_10245518	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300009088\|Ga0099830_11635682	Not Available	537	Open in IMG/M
3300009089\|Ga0099828_11617946	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	570	Open in IMG/M
3300009137\|Ga0066709_102056541	Not Available	790	Open in IMG/M
3300009147\|Ga0114129_10117368	All Organisms → cellular organisms → Bacteria	3667	Open in IMG/M
3300009156\|Ga0111538_11835829	All Organisms → cellular organisms → Bacteria → Terrabacteria group	763	Open in IMG/M
3300009162\|Ga0075423_13051123	Not Available	513	Open in IMG/M
3300010361\|Ga0126378_10658971	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300010364\|Ga0134066_10400574	Not Available	523	Open in IMG/M
3300010376\|Ga0126381_100241597	All Organisms → cellular organisms → Bacteria	2441	Open in IMG/M
3300010379\|Ga0136449_100092383	All Organisms → cellular organisms → Bacteria	6282	Open in IMG/M
3300011269\|Ga0137392_10508166	Not Available	1001	Open in IMG/M
3300011269\|Ga0137392_10872837	All Organisms → cellular organisms → Bacteria → Terrabacteria group	741	Open in IMG/M
3300011270\|Ga0137391_10093123	All Organisms → cellular organisms → Bacteria → Proteobacteria	2606	Open in IMG/M
3300011270\|Ga0137391_10181359	All Organisms → cellular organisms → Bacteria	1834	Open in IMG/M
3300012189\|Ga0137388_10955403	Not Available	792	Open in IMG/M
3300012199\|Ga0137383_10129918	All Organisms → cellular organisms → Bacteria	1840	Open in IMG/M
3300012200\|Ga0137382_10031046	All Organisms → cellular organisms → Bacteria	3191	Open in IMG/M
3300012200\|Ga0137382_10697312	Not Available	728	Open in IMG/M
3300012201\|Ga0137365_10349336	Not Available	1093	Open in IMG/M
3300012202\|Ga0137363_11652088	Not Available	533	Open in IMG/M
3300012203\|Ga0137399_10225069	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	1531	Open in IMG/M
3300012203\|Ga0137399_10229333	All Organisms → cellular organisms → Bacteria	1517	Open in IMG/M
3300012204\|Ga0137374_10099036	All Organisms → cellular organisms → Bacteria	2756	Open in IMG/M
3300012204\|Ga0137374_10220507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1615	Open in IMG/M
3300012207\|Ga0137381_10038280	All Organisms → cellular organisms → Bacteria	3908	Open in IMG/M
3300012211\|Ga0137377_10465279	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1203	Open in IMG/M
3300012349\|Ga0137387_10815962	Not Available	675	Open in IMG/M
3300012356\|Ga0137371_10679126	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300012361\|Ga0137360_11722861	Not Available	532	Open in IMG/M
3300012683\|Ga0137398_10171033	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	1421	Open in IMG/M
3300012685\|Ga0137397_11353044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	503	Open in IMG/M
3300012922\|Ga0137394_11180575	All Organisms → cellular organisms → Archaea → Asgard group	629	Open in IMG/M
3300012925\|Ga0137419_11011226	Not Available	689	Open in IMG/M
3300012930\|Ga0137407_10613188	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1022	Open in IMG/M
3300012944\|Ga0137410_10000572	All Organisms → cellular organisms → Bacteria	26011	Open in IMG/M
3300015241\|Ga0137418_10282244	Not Available	1395	Open in IMG/M
3300015241\|Ga0137418_11239379	Not Available	523	Open in IMG/M
3300017934\|Ga0187803_10011257	All Organisms → cellular organisms → Bacteria	3572	Open in IMG/M
3300017934\|Ga0187803_10083051	Not Available	1258	Open in IMG/M
3300017934\|Ga0187803_10135128	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	969	Open in IMG/M
3300017943\|Ga0187819_10086582	All Organisms → cellular organisms → Bacteria	1870	Open in IMG/M
3300017943\|Ga0187819_10172469	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	1283	Open in IMG/M
3300017961\|Ga0187778_10023532	All Organisms → cellular organisms → Bacteria	3769	Open in IMG/M
3300017970\|Ga0187783_10315185	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1140	Open in IMG/M
3300018031\|Ga0184634_10025499	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2291	Open in IMG/M
3300018088\|Ga0187771_11755276	Not Available	527	Open in IMG/M
3300018090\|Ga0187770_11027439	Not Available	664	Open in IMG/M
3300018090\|Ga0187770_11673236	Not Available	520	Open in IMG/M
3300019360\|Ga0187894_10185883	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	1026	Open in IMG/M
3300020579\|Ga0210407_10001821	All Organisms → cellular organisms → Bacteria	19140	Open in IMG/M
3300020579\|Ga0210407_10813037	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300020581\|Ga0210399_11333248	Not Available	564	Open in IMG/M
3300020583\|Ga0210401_10183402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae	1949	Open in IMG/M
3300021178\|Ga0210408_10360698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1158	Open in IMG/M
3300021420\|Ga0210394_11555477	Not Available	558	Open in IMG/M
3300021477\|Ga0210398_10134874	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	2007	Open in IMG/M
3300021559\|Ga0210409_10118042	All Organisms → cellular organisms → Bacteria	2441	Open in IMG/M
3300021559\|Ga0210409_10512926	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300025308\|Ga0209211_10298189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	969	Open in IMG/M
3300025910\|Ga0207684_10349634	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	1272	Open in IMG/M
3300026277\|Ga0209350_1016481	All Organisms → cellular organisms → Bacteria	2313	Open in IMG/M
3300026551\|Ga0209648_10000868	All Organisms → cellular organisms → Bacteria	24117	Open in IMG/M
3300026557\|Ga0179587_10142141	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1490	Open in IMG/M
3300027029\|Ga0208731_1029132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	603	Open in IMG/M
3300027567\|Ga0209115_1029369	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	1239	Open in IMG/M
3300027643\|Ga0209076_1008500	All Organisms → cellular organisms → Bacteria	2572	Open in IMG/M
3300027684\|Ga0209626_1208365	Not Available	518	Open in IMG/M
3300027842\|Ga0209580_10066171	All Organisms → cellular organisms → Bacteria	1710	Open in IMG/M
3300027867\|Ga0209167_10000004	All Organisms → cellular organisms → Bacteria → Acidobacteria	595036	Open in IMG/M
3300027879\|Ga0209169_10663508	Not Available	542	Open in IMG/M
3300028742\|Ga0302220_10177373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	802	Open in IMG/M
3300028759\|Ga0302224_10300084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	645	Open in IMG/M
3300028795\|Ga0302227_10417218	Not Available	509	Open in IMG/M
3300030618\|Ga0311354_10030295	All Organisms → cellular organisms → Bacteria	6520	Open in IMG/M
3300031057\|Ga0170834_110137320	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300031720\|Ga0307469_10024306	All Organisms → cellular organisms → Bacteria	3375	Open in IMG/M
3300031862\|Ga0315280_10033449	All Organisms → cellular organisms → Bacteria	4900	Open in IMG/M
3300031949\|Ga0214473_10858152	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300031962\|Ga0307479_10346309	All Organisms → cellular organisms → Bacteria	1469	Open in IMG/M
3300031965\|Ga0326597_10826155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	958	Open in IMG/M
3300032160\|Ga0311301_10239952	All Organisms → cellular organisms → Bacteria	3012	Open in IMG/M
3300032783\|Ga0335079_10534430	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300032805\|Ga0335078_10023555	All Organisms → cellular organisms → Bacteria	9152	Open in IMG/M
3300032805\|Ga0335078_11246588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Planktothrix	854	Open in IMG/M
3300032892\|Ga0335081_10453304	All Organisms → cellular organisms → Bacteria	1631	Open in IMG/M
3300032895\|Ga0335074_10021390	All Organisms → cellular organisms → Bacteria	9125	Open in IMG/M
3300033402\|Ga0326728_10058346	All Organisms → cellular organisms → Bacteria	5415	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.55%
Host-Associated	Host-Associated	3.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.21%
Aquatic	Environmental → Aquatic	10.34%
Plants	Host-Associated → Plants	3.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.03%
Freshwater	Environmental → Aquatic → Freshwater	6.90%
Peat	Environmental → Terrestrial → Peat	4.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.45%
Sediment	Environmental → Aquatic → Sediment	2.59%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.86%
Cave	Environmental → Terrestrial → Cave	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.62%
Loam	Environmental → Terrestrial → Soil → Loam	8.62%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.59%
Lake	Environmental → Aquatic → Freshwater → Lake	0.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.86%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.86%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.52%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.21%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.34%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.17%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.31%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.59%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.86%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.86%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.86%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.86%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.86%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	30.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.17%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.31%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.31%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.59%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.72%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.72%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.86%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.86%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.86%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.86%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025308	Soil microbial communities from Rifle, Colorado, USA - Groundwater A2	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027029	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF045 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031862	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_09240982	2228664022	Soil	MTHSSEQVLSDQTPEEVIEIDENGVVHAVGKTPAQLKSTVLRDPEGEY
INPhiseqgaiiFebDRAFT_1006928435	3300000364	Soil	MTHSSEQVLSDQTPEEVIEIDENGVVHAVGKTPAQLKSTVLRDPEGEY*
JGI25388J43891_10630522	3300002909	Grasslands Soil	MPHSADDALNDQTPEEIIEIDENGVVHTTGKTAKHLKSTVLRDPEGEY*
JGI25617J43924_100232893	3300002914	Grasslands Soil	MTHSSEKLLNEQTSEEIIEIDENGVVHAQGKTAEQLKSTVLRDPEGEY*
Ga0062389_1047367882	3300004092	Bog Forest Soil	MPEHSSEALLMNQTQEEVIEIDENGVVHAIGRTPSGLKTTVLRDPEGEF*
Ga0066685_111606971	3300005180	Soil	MPHSADDALNDQTPEEIIEIDENGVVHATGKTAKHLKSTVLRDPEGEY*
Ga0066675_109663402	3300005187	Soil	MAHSSEQVLKDQTPEEVIEIDENGVVHAVGKTPAQLKSTVLR
Ga0065707_104789122	3300005295	Switchgrass Rhizosphere	MSHSSEQVLNDQTAEEIIEIDENGVVHAVGKTPDQLKSTVLRDPEGEY*
Ga0066682_101483342	3300005450	Soil	MAHSSEKVLNDQTPEEIIEIDENGVVHATGMTAKHLKSTVLRDPEGEY*
Ga0070706_1004202572	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MADAKTHSSERVLTNQTEEEVIEIDENGVVHAIGYTPSQLKSTVLRDPEGEYAID*
Ga0070698_1001287944	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MAHSSENVLNNQTPEEIIEIDENGVVHATGMTAKSLKSTVLRDPEGEY*
Ga0070698_1001801172	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MADAKTHSSERVLTNQTEEEVIEIDENGVVHTVGYTPSQLKSTVLRDPEGEYAID*
Ga0070738_102293432	3300005531	Surface Soil	MAEHSSESLLRNQTQEEVIEIDENGVVHAIGRTPSGLKSTVLRDPEGEY*
Ga0070733_10000054121	3300005541	Surface Soil	MSDAKTHSSERVLTNQREEEVIEIDENGVVHAVGYTPSQLKSTVLRDPEGEYGND*
Ga0070732_100514263	3300005542	Surface Soil	MEHSSEKLLNEQTSEEIIEIDENGVVHAQGQTAAALKSTVLRDPEGEF*
Ga0070761_107017191	3300005591	Soil	MADTHSSEKALTNQREEEVIEIDENGVVHAVGYTPRELKSTVLRDPEGEYA*
Ga0066903_1034209752	3300005764	Tropical Forest Soil	MANTNTHSSERALTNQREEEVIEIDENGVVHAVGYTPSNLKSTVLRDPEGEFGND*
Ga0075029_1009470901	3300006052	Watersheds	VAEHSSEELLKNQTEEEVIEIDENGVVHAVGRTPTTLQSTVLRDPEGEY*
Ga0075030_1016438122	3300006162	Watersheds	MADTHSSEKALTNQREEEVIEIDENGVVHAVGYTPRDLKSTVLRDPEGEYA*
Ga0066659_115084251	3300006797	Soil	MAHSSEDALNEQTPEEIIEIDENGVVHATGKTAKHLKSTVLRDPEGEY*
Ga0075421_1022434411	3300006845	Populus Rhizosphere	MPHSSEQVLNDQTPEEIIEIDENGVVHAVGKTPAQLKS
Ga0079219_112550052	3300006954	Agricultural Soil	MADTRTHSSERVLTNQSEEEVIEIDENGVVHAVGYTPSQLKSTVLRDPEGE
Ga0099793_100053522	3300007258	Vadose Zone Soil	MAENTHSSERVLTNQREEEVIEIDENGVVHAVGYTPNQLKSTVLRDPEGEYSDD*
Ga0099793_106840132	3300007258	Vadose Zone Soil	MTTHSSERVLTQQTQEEIIEIDENGVVHAAGYTPQQLKSTVLRDPEGEY*
Ga0099794_102195452	3300007265	Vadose Zone Soil	MTTHSSERVLTQQTQEEIIEIDENGVVHAVGCTPQELKSTVLRDPEGE
Ga0102924_100103812	3300007982	Iron-Sulfur Acid Spring	MATHSAERTLTQQTEEEIIEIDENGVVHAVGYSPKELKSTVLRDPEGEY*
Ga0066710_1017331332	3300009012	Grasslands Soil	MEHSSERVLRDQTPEEVIEIDENGVVHAAGMTPAQLKSTVLRDPEGEY
Ga0066710_1047839182	3300009012	Grasslands Soil	AEHSSRETLLNQDEEEIIEIDENGVVHAVGKRSRDLKRTVLRDPEGEY
Ga0099830_102455182	3300009088	Vadose Zone Soil	MTTHSSERVLTEQTQEEIIEIDENGVVHAVGYTPQNLKSTVLRDPEGEY*
Ga0099830_116356822	3300009088	Vadose Zone Soil	MPDAKTHSSERVLTNQREEEVIEIDENGVVHAVGYTPSQLKSTVL
Ga0099828_116179462	3300009089	Vadose Zone Soil	MAENTHSSERVLTNQREEEVIEIDENGVVHAVGYTPSQLKSTVLRDPEGEYW
Ga0066709_1020565412	3300009137	Grasslands Soil	MPHSSEDLLNDQTGEEIIEIDENGVVHSKGRTPAQFKSTVLRDPEGEF*
Ga0114129_101173685	3300009147	Populus Rhizosphere	MEHSSEKVLKEQTDEEIIEIDENGVVHAVGRTADKLKTTVLRDPEGEY*
Ga0111538_118358291	3300009156	Populus Rhizosphere	MPHSSEQVLNDQTPEEIIEIDENGVVHAVGKTPAQLKSTVLRDPEGEY*
Ga0075423_130511232	3300009162	Populus Rhizosphere	MSHSAEQVLREQTSEEIIEIDENGVVHAKGMTAVQLKSTVLRDPEGEY*
Ga0126378_106589712	3300010361	Tropical Forest Soil	MAENTHSSERVLTNQREEEVIEIDENGVVHAVGYTPSQLKSTVLRDPEGEYSDD*
Ga0134066_104005742	3300010364	Grasslands Soil	MTTHSSERVLTQQTQEEIIEIDENGVVHAVGCTPKDLKSTVLRDPEGEY*
Ga0126381_1002415974	3300010376	Tropical Forest Soil	MSNHSSEQLLNNQQGEEVIEIDENGVVHAVGYTPSNLKSTVLRDPEGEF*
Ga0136449_1000923835	3300010379	Peatlands Soil	MMTEHSAERTLKEQTDEEIIEIDENGVVHALGFTPKQLKSTVLRDPEGEY*
Ga0137392_105081662	3300011269	Vadose Zone Soil	MTHSAEQVLNDQTPEEIIEIDENGVVHAVGKTPAQLKSTVLRDPEGEY*
Ga0137392_108728372	3300011269	Vadose Zone Soil	FEEEGMTTHSSERVLTEQTQEEIIEIDENGVVHAVGYTPQNLKSTVLRDPEGEY*
Ga0137391_100931235	3300011270	Vadose Zone Soil	MADATTHSSERVLTNQTEEEVIEIDENGVVHAVGYTPRDLKSTVLRDPEGEYAVI
Ga0137391_101813593	3300011270	Vadose Zone Soil	MTIHSSERVLTEQTQEEIIEIDENGVVHAVGYTPQNLKSTVLRDPEGEY*
Ga0137388_109554031	3300012189	Vadose Zone Soil	MADATTHSSERVLTNQTEEEVIEIDENGVVHAVGYTPRDLKSTVLRDPEGEYAVIEISSDQL
Ga0137383_101299183	3300012199	Vadose Zone Soil	MTTHSSERVLTQQTQEEIIEIDENGVVHAVGYTPKDLKSTVLRDPEGEY*
Ga0137382_100310464	3300012200	Vadose Zone Soil	MTTHSSERALTQQTQEEIIEIDENGVVHAAGYTPQQLKSTVLRDPEGEY*
Ga0137382_106973122	3300012200	Vadose Zone Soil	MMAEHSSRETLLNQDEEEIIEIDENGVVHAVGKSPRDLKRTVLRDPEGEY*
Ga0137365_103493362	3300012201	Vadose Zone Soil	MAHSSEDLLNDQTGEEIIEIDENGVVHSKGRTPAQLKSTVLRDPEGEYGCGD*
Ga0137363_116520881	3300012202	Vadose Zone Soil	MPDAKTHSSERVLTNQREEEVIEIDENGVVHAVGYTPSQLKSTVLRDPEGEYGND*
Ga0137399_102250692	3300012203	Vadose Zone Soil	MTTHSSERVLTEQTQEEIIEIDENGVVHAAGYTPQNLKSTVLRDPEGEY*
Ga0137399_102293332	3300012203	Vadose Zone Soil	MAHSSEHLLNEQTGEEIIEIDENGVVHAKGMTPSQLKSTVLRDPEGEF*
Ga0137374_100990363	3300012204	Vadose Zone Soil	MPHSSEQVLTQQTAEEIIEIDENGVVHAVGMTASQLKSTVLRDPEGEY*
Ga0137374_102205074	3300012204	Vadose Zone Soil	MPHSADDALNDQTAEEIIEIDENGVVHATGKTAKHLKSTVLRDPEGEY*
Ga0137381_100382801	3300012207	Vadose Zone Soil	QRLSVMAHSSEDALNEQTPEEIIEIDENGVVHATGKTAKHLKSTVLRDPEGEY*
Ga0137377_104652792	3300012211	Vadose Zone Soil	MAHSSEKVLNEQTEEQIIEIDENGVVHAVGRTAENLKSTVLRDPEGEY*
Ga0137387_108159622	3300012349	Vadose Zone Soil	MAHSSEDLLNGQTGEEIIEIDENGVVHSKGRTPSQLKSTVLRDPEGEF*
Ga0137371_106791261	3300012356	Vadose Zone Soil	EDLLNDQTGEEIIEIDENGVVHSKGRTPAQLKSTVLRDPEGEYGCGD*
Ga0137360_117228612	3300012361	Vadose Zone Soil	MTHSSEKLLNEQTGEEIIEIDENGVVHAKGKTAEQLKSTVLRDP*
Ga0137398_101710333	3300012683	Vadose Zone Soil	MTTHSSERVLTQQTEEEIIEIDENGVVHAAGCTPQQLKSTVLRDPEGEY*
Ga0137397_113530442	3300012685	Vadose Zone Soil	TTHSSERVLTQQTQEEIIEIDENGVVHAVGCTPQELKSTVLRDPEGEY*
Ga0137394_111805752	3300012922	Vadose Zone Soil	MQHSADDALNDQTPEEIIEIDENGVVHTTGKTAKHLKSTVLRDPEGEY*
Ga0137419_110112262	3300012925	Vadose Zone Soil	MAHSSEDLLNEQTGEEIIEIDENGVVHAKGMTPSQLKSTVLRDPEGEF*
Ga0137407_106131882	3300012930	Vadose Zone Soil	MTHSSEKLLNEQTREEIIEIDENGVVHAQGKTAEQLKSTVLRDPEGEY*
Ga0137410_1000057214	3300012944	Vadose Zone Soil	MAENTHSSERVLTNQREEEVIEIDENGVVHAVGYTPNQLKSTVLRDPEGEYSDWAK*
Ga0137418_102822442	3300015241	Vadose Zone Soil	MAHSSEDALNEQTPEEIIEIDENGVVHAKGMTPSQLKSTVLRDPEGEF*
Ga0137418_112393792	3300015241	Vadose Zone Soil	MTTHSSERVLTEQTQEEIIEIDENGVVHAAGYTPQNLKSTVLRDPEVEY*
Ga0187803_100112573	3300017934	Freshwater Sediment	MPEHSSEQLLKNQTQEEVIEIDENGVVHAVGRTPETLKSTVLRDPEGEY
Ga0187803_100830512	3300017934	Freshwater Sediment	MAEHSSEALLRNQTQEEIIEIDENGVVHAIGRTSSGLKSTVLRDPEGEY
Ga0187803_101351282	3300017934	Freshwater Sediment	MTTHSSERVLTEQTQEEIIEIDENGVVHAVGYTPQDLKSTVLRDPEGEY
Ga0187819_100865823	3300017943	Freshwater Sediment	MAHSSEKTLNDQTPEEIIEIDENGVVHAQGMTASQLKSTVLRDPEGEY
Ga0187819_101724692	3300017943	Freshwater Sediment	MTTHSSERVLTEQTQEEIIEIDENGVVHAVGYTPQNLKSTVLRDPEGEY
Ga0187778_100235325	3300017961	Tropical Peatland	MADAKTHSSERVLTNQREEEVIEIDENGVVHAVGYTPSQLKSTVLRDPEGEYSSD
Ga0187783_103151852	3300017970	Tropical Peatland	MTEHSSRETLMKQDEEEIIEIDENGVVHAVGRIGQGLKSTVLRDPEGEY
Ga0184634_100254991	3300018031	Groundwater Sediment	MEHSSEKVLNEQTSEEIIEIDENGVVHAVGKTAQKLKTTVLRDPEGEY
Ga0187771_117552761	3300018088	Tropical Peatland	MQHSAERALNNQEEEEIIEVDENGVVHCKGYTPESLKSTVLRDPEGE
Ga0187770_110274392	3300018090	Tropical Peatland	MADTNTHSSERVLTNQREEEVIEIDENGVVHAVGYTPRQLKSTVLRDPEGEYANA
Ga0187770_116732362	3300018090	Tropical Peatland	MTTHSSERVLTQQTQEEIIEIDENGVVHALGCTPNDLKSTVLRDPEGEY
Ga0187894_101858832	3300019360	Microbial Mat On Rocks	MTHSAEQTLSEQTDEEIIEIDENGVVHAVGRTPQQLKSTVLRDPEGEY
Ga0210407_100018219	3300020579	Soil	MAENTHSSERVLTNQREEEVIEIDENGVVHAVGCTPNQLKSTVLRDPEGEYWDD
Ga0210407_108130372	3300020579	Soil	MTTHSSERVLTQQTQEEIIEIDENGVVHAVGYTPKDLKSTVLRDPEGEY
Ga0210399_113332482	3300020581	Soil	MADTHSSEKALTNQREEEVIEIDENGVVHAVGYTPRDLKSTVLRDPEGEYA
Ga0210401_101834023	3300020583	Soil	MAEHSSRETLMKQDEEEIIEIDENGVVHAVGRTGEGLKSTVLRDPEGEY
Ga0210408_103606982	3300021178	Soil	MATHSAERTLTQQTEEEIIEIDENGVVHAVGYSPKELKSTVLRDPEGEY
Ga0210394_115554772	3300021420	Soil	VDNNTHSSERVLNNQREEELIEIDENGVVHAVGYTPNELKSTVL
Ga0210398_101348744	3300021477	Soil	MPENTPNHSSERVLTNQREEEVIEIDENGVVHAVGYTPNQLKSTVLRDPEGEYSCG
Ga0210409_101180422	3300021559	Soil	MAEHSSAALLRNQTQEEIIEIDENGVVHSIGRTPSGLKSTVLRDPEGEY
Ga0210409_105129263	3300021559	Soil	MSNSHSSERALTNQREEEVIEIDENGVVHAVGYTPKDLKSTVLRDPEGEFGND
Ga0209211_102981892	3300025308	Soil	MEHSSEKVLNEQTSEEIIEIDENGVVHAKGRTLEKLKKTVLRDPEGEY
Ga0207684_103496342	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MADAKTHSSERVLTNQTEEEVIEIDENGVVHAIGYTPSQLKSTVLRDPEGEYAID
Ga0209350_10164814	3300026277	Grasslands Soil	MPHSADDALNDQTPEEIIEIDENGVVHTTGKTAKHLKSTVLRDPEGEY
Ga0209648_1000086816	3300026551	Grasslands Soil	MTHSSEKLLNEQTSEEIIEIDENGVVHAQGKTAEQLKSTVLRDPEGEY
Ga0179587_101421411	3300026557	Vadose Zone Soil	MTTHSSERVLTEQTQEEIIEIDENGVVHAAGYTPQNLKSTVLRDPEGEY
Ga0208731_10291322	3300027029	Forest Soil	RRQQLNTPSWGEDNTMAHSSEQVLNDQTAEEIIEIDENGVVHAAGMTPDQLKSTVLRDPEGEY
Ga0209115_10293691	3300027567	Forest Soil	MDNNTHSSERVLNNQREEEVIEIDENGVVHAVGYTPNELKSTVLRDPEGE
Ga0209076_10085002	3300027643	Vadose Zone Soil	MAENTHSSERVLTNQREEEVIEIDENGVVHAVGYTPNQLKSTVLRDPEGEYSDD
Ga0209626_12083651	3300027684	Forest Soil	MADTHSSEKALTNQREEEVIEIDENGVVHAVGYTPRDLKSTV
Ga0209580_100661711	3300027842	Surface Soil	MEHSSEKLLNEQTSEEIIEIDENGVVHAQGQTAAALKSTVLRDPEGEF
Ga0209167_1000000473	3300027867	Surface Soil	MSDAKTHSSERVLTNQREEEVIEIDENGVVHAVGYTPSQLKSTVLRDPEGEYGND
Ga0209169_106635081	3300027879	Soil	MADNKTHSSERVLTNQTEEEVIEIDENGVVHAVGYTPRELKSTVLRDPEGEYAVIEI
Ga0302220_101773732	3300028742	Palsa	MDNSNHSSERVLNNQREEEVIEIDENGVVHAVGYTAVELKRTVIRDPEGEYGSSRN
Ga0302224_103000842	3300028759	Palsa	MDNNSHSSERVLNNQREEEVIEIDEKGVVHAVGYTAVELKRTVIRDPEGEYGSSRN
Ga0302227_104172182	3300028795	Palsa	MDNSNHSSERVLNNQREEEVIEIDENGVVHAVGYTAVELK
Ga0311354_100302954	3300030618	Palsa	MDNNNHSSERVLNNQREEEVIEIDENGVVHAVGYTAVELKRTVIRDPEGEYGSSRN
Ga0170834_1101373202	3300031057	Forest Soil	MSNTHSSERALANQREEEVIEIDENGVVHAVGYTPKDLKSTVLRDPEGEFGND
Ga0307469_100243065	3300031720	Hardwood Forest Soil	MSHSSEQVLNEQTPEEIIEIDENGVVHAVGKTPAQLKSTVLRDPEGEY
Ga0315280_100334493	3300031862	Sediment	MQHSAERVLNDQEEEEIIEIDENGVVHSKGYTPQALKSTVLRDPEGEY
Ga0214473_108581521	3300031949	Soil	AERALNDQNQEEVIEIDENGVVHMKGFTARELKSTVLRDPEGEY
Ga0307479_103463092	3300031962	Hardwood Forest Soil	MPHSAEQVLSDQTPEEVIEIDENGVVHAVGMTPSQLKSTVLRDPEGEY
Ga0326597_108261552	3300031965	Soil	MAHSSEKVLTEQTPEEIIEIDEDGVVHAVGKTPAQLKSTVLRDPEGEF
Ga0311301_102399523	3300032160	Peatlands Soil	MTEHSAERTLKEQTDEEIIEIDENGVVHALGFTPKQLKSTVLRDPEGEY
Ga0335079_105344303	3300032783	Soil	MAENNHSSERVLTNQREEEVIEIDENGVVHAVGYTPAQFKSTVLRDPEGEYA
Ga0335078_100235557	3300032805	Soil	MAENTHSSERVLTNQREEEVIEIDENGVVHAVGYTPAQFKSTVLRDPEGEYA
Ga0335078_112465881	3300032805	Soil	VATNHSSERVLANQREEEVIEIDENGVVHAVGYTPSQLKSTVLRDPEGEYGE
Ga0335081_104533042	3300032892	Soil	MTHSSEDLLNQQSGEEIIEIDENGVVHAAGRTPSQLKSTVLRDPEGEF
Ga0335074_100213907	3300032895	Soil	VDNNTHSSERVLNNQREEEVIEIDENGVVHAVGYTPNELKSTVLRDPEGEYGPS
Ga0326728_100583462	3300033402	Peat Soil	MSHSSEKVLNDQTPEEIIEIDENGVVHAVGKTAADLKSTVLRDPEGEY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078444

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences