Metagenome / Metatranscriptome Family F078431

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078431
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	85 residues
Representative Sequence	VHVLRNMVEAVKPGGLVLDLQVIRPNPTAEVDGRVVCEIDGEPLFRTADAATAAVDALIRAGRLVEQAVDDHDVCEHYDNGADLVDDF
Number of Associated Samples	104
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.21 %
% of genes near scaffold ends (potentially truncated)	96.55 %
% of genes from short scaffolds (< 2000 bps)	99.14 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (12.931 % of family members)
Environment Ontology (ENVO)	Unclassified (22.414 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.276 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.17% β-sheet: 7.76% Coil/Unstructured: 62.07%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF13649	Methyltransf_25	54.31
PF12847	Methyltransf_18	14.66
PF08241	Methyltransf_11	12.07
PF13847	Methyltransf_31	8.62
PF08044	DUF1707	0.86
PF13478	XdhC_C	0.86
PF00581	Rhodanese	0.86
PF13659	Obsolete Pfam Family	0.86
PF04963	Sigma54_CBD	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1508	DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog	Transcription [K]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	56.03 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.59 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	56.03 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.86 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	49.14 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %
Vibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales	0.86 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	49.14 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	49.14 %
Vibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	49.14 %
Vibrio cholerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cholerae	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000878\|AL9A1W_1089374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	639	Open in IMG/M
3300000880\|AL20A1W_1106796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	673	Open in IMG/M
3300000891\|JGI10214J12806_10346984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1165	Open in IMG/M
3300001535\|A3PFW1_10371890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	898	Open in IMG/M
3300001538\|A10PFW1_10245338	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300004479\|Ga0062595_101671561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	598	Open in IMG/M
3300004479\|Ga0062595_102068045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300005166\|Ga0066674_10202246	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300005167\|Ga0066672_10168335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1383	Open in IMG/M
3300005167\|Ga0066672_10981906	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300005178\|Ga0066688_10368262	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300005178\|Ga0066688_10593820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	711	Open in IMG/M
3300005181\|Ga0066678_10728128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	660	Open in IMG/M
3300005344\|Ga0070661_101929396	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300005434\|Ga0070709_11562179	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300005440\|Ga0070705_101642436	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300005456\|Ga0070678_102121941	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300005468\|Ga0070707_101261747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	705	Open in IMG/M
3300005468\|Ga0070707_101400837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	666	Open in IMG/M
3300005468\|Ga0070707_102130825	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300005529\|Ga0070741_10623650	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300005553\|Ga0066695_10333658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	953	Open in IMG/M
3300005555\|Ga0066692_10853180	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300005560\|Ga0066670_10349893	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300005560\|Ga0066670_10714155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	607	Open in IMG/M
3300005568\|Ga0066703_10602899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	640	Open in IMG/M
3300005569\|Ga0066705_10455298	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300005764\|Ga0066903_100883727	All Organisms → cellular organisms → Bacteria	1614	Open in IMG/M
3300005873\|Ga0075287_1051868	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300005891\|Ga0075283_1010297	All Organisms → cellular organisms → Bacteria	1389	Open in IMG/M
3300005900\|Ga0075272_1104117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300005902\|Ga0075273_10028938	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300005985\|Ga0081539_10479899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	515	Open in IMG/M
3300006034\|Ga0066656_10741519	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300006050\|Ga0075028_100818960	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300006059\|Ga0075017_100797023	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300006800\|Ga0066660_11358762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	556	Open in IMG/M
3300006804\|Ga0079221_10899484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	650	Open in IMG/M
3300006904\|Ga0075424_101513829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	712	Open in IMG/M
3300007076\|Ga0075435_101584301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	575	Open in IMG/M
3300007258\|Ga0099793_10690446	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300009012\|Ga0066710_102267976	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300009089\|Ga0099828_10726984	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300009089\|Ga0099828_11059986	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300009090\|Ga0099827_10746119	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300009098\|Ga0105245_13035303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	520	Open in IMG/M
3300009137\|Ga0066709_102096105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	782	Open in IMG/M
3300009137\|Ga0066709_103959121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	538	Open in IMG/M
3300009137\|Ga0066709_104555809	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300009147\|Ga0114129_10352966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1947	Open in IMG/M
3300009147\|Ga0114129_11627452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	790	Open in IMG/M
3300009777\|Ga0105164_10517398	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300010325\|Ga0134064_10510973	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300010329\|Ga0134111_10424477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	573	Open in IMG/M
3300010360\|Ga0126372_13070393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	518	Open in IMG/M
3300010366\|Ga0126379_12410806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	625	Open in IMG/M
3300012011\|Ga0120152_1093837	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300012189\|Ga0137388_11114223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	726	Open in IMG/M
3300012198\|Ga0137364_11395384	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300012205\|Ga0137362_11145467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	660	Open in IMG/M
3300012532\|Ga0137373_11201552	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300012685\|Ga0137397_10689465	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300012898\|Ga0157293_10327445	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300012900\|Ga0157292_10427840	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300012910\|Ga0157308_10033923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1237	Open in IMG/M
3300012951\|Ga0164300_10201379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	976	Open in IMG/M
3300012972\|Ga0134077_10293085	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300012977\|Ga0134087_10615625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300012988\|Ga0164306_10325773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1130	Open in IMG/M
3300013100\|Ga0157373_11337180	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300013765\|Ga0120172_1081541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	798	Open in IMG/M
3300014965\|Ga0120193_10026758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	699	Open in IMG/M
3300015359\|Ga0134085_10416840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	605	Open in IMG/M
3300015372\|Ga0132256_102573482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	610	Open in IMG/M
3300016371\|Ga0182034_11802059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539	Open in IMG/M
3300016422\|Ga0182039_10311492	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300018072\|Ga0184635_10265288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	678	Open in IMG/M
3300018469\|Ga0190270_11274414	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300019361\|Ga0173482_10069308	All Organisms → cellular organisms → Bacteria	1202	Open in IMG/M
3300022467\|Ga0224712_10469101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	606	Open in IMG/M
3300025321\|Ga0207656_10661095	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300025906\|Ga0207699_11410063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	515	Open in IMG/M
3300025910\|Ga0207684_11523109	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300025920\|Ga0207649_11659633	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300025929\|Ga0207664_11877517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300026296\|Ga0209235_1007678	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6038	Open in IMG/M
3300026310\|Ga0209239_1303955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300026313\|Ga0209761_1328460	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300027388\|Ga0208995_1013586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cholerae	1392	Open in IMG/M
3300027725\|Ga0209178_1373199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	537	Open in IMG/M
3300027843\|Ga0209798_10104149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1443	Open in IMG/M
3300027875\|Ga0209283_10406788	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300027875\|Ga0209283_10991731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300027882\|Ga0209590_10346221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	957	Open in IMG/M
3300028807\|Ga0307305_10326651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	697	Open in IMG/M
3300031170\|Ga0307498_10163793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	749	Open in IMG/M
3300031545\|Ga0318541_10558872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	640	Open in IMG/M
3300031549\|Ga0318571_10440378	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300031679\|Ga0318561_10287461	All Organisms → cellular organisms → Bacteria → Proteobacteria	899	Open in IMG/M
3300031747\|Ga0318502_10132123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1411	Open in IMG/M
3300031770\|Ga0318521_10714443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	609	Open in IMG/M
3300031797\|Ga0318550_10416681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	650	Open in IMG/M
3300031799\|Ga0318565_10166068	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300031896\|Ga0318551_10713829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	581	Open in IMG/M
3300031912\|Ga0306921_10585341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1292	Open in IMG/M
3300031942\|Ga0310916_11260905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	609	Open in IMG/M
3300031945\|Ga0310913_10597045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	783	Open in IMG/M
3300031947\|Ga0310909_11102195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	645	Open in IMG/M
3300032010\|Ga0318569_10353343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	685	Open in IMG/M
3300032043\|Ga0318556_10621525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300032076\|Ga0306924_10412868	All Organisms → cellular organisms → Bacteria	1545	Open in IMG/M
3300032261\|Ga0306920_100811864	All Organisms → cellular organisms → Bacteria	1372	Open in IMG/M
3300032261\|Ga0306920_102272180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	752	Open in IMG/M
3300032421\|Ga0310812_10138195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1028	Open in IMG/M
3300033407\|Ga0214472_11010030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	735	Open in IMG/M
3300034164\|Ga0364940_0133202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	711	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.66%
Host-Associated	Host-Associated	10.34%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.34%
Plants	Host-Associated → Plants	10.34%
Aquatic	Environmental → Aquatic	4.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.76%
Sediment	Environmental → Aquatic → Sediment	2.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.59%
Freshwater	Environmental → Aquatic → Freshwater	1.72%
Floodplain	Environmental → Terrestrial → Floodplain	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.41%
Loam	Environmental → Terrestrial → Soil → Loam	8.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.72%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.86%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	0.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.86%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.90%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.45%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.86%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	0.86%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.86%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.21%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.62%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.03%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.03%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.31%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	3.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.45%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.72%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.86%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.86%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000878	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-5 cm-9A)- 1 week illumina	Environmental	Open in IMG/M
3300000880	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-65cm-20A)- 1 week illumina	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300001535	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005873	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301	Environmental	Open in IMG/M
3300005891	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304	Environmental	Open in IMG/M
3300005900	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_404	Environmental	Open in IMG/M
3300005902	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_102	Environmental	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009777	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013765	Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M	Environmental	Open in IMG/M
3300014965	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T2	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AL9A1W_10893741	3300000878	Permafrost	VHVLSNMVEAVISGGAVLDLQVIRPNPVVESGSRVLCEVDGESLLRKADAAARAVDSLVSAGRLVEEAVDDDDVRKHYRTGSDLV
AL20A1W_11067961	3300000880	Permafrost	VHVLSNMVDAVRPGGAVLDLQVIRPNPRVEVDGRVLCEIDGQPLFRKADAATAAVDALVAAGRLVEQEVDDHDVRKHYANGADLIDDFADQTRRLPDE
JGI10214J12806_103469841	3300000891	Soil	MVQAVRRDGVVLDLQVIRPDPLVEARGRVVCPIDGEPLFRTADAATAAIDVLVRTGRLVEDAVDDHEVRKHYVDGPELVADIAGSRRSLPAE
A3PFW1_103718904	3300001535	Permafrost	VHVLRNMVEAVKPGGLVLDLQVIRPNPTAEVDRGVICEIDGEPLFRTADAATAAVDALVRTGRLVEQAIDDHDVRKH
A10PFW1_102453382	3300001538	Permafrost	VHVLNNMVEAVIPGGAVLDLQVIRPNPIVESDDRALCEVDGESLLRKADAAARAVDSLVGAGRLIEEAVDDHDVRKHYRT
Ga0062595_1016715612	3300004479	Soil	MVRAIRPGGDVLDLQVIRPNPTVEVGGQVVCEIDGEPLFRMADAATAAVDALIRTGELVEQAIDDHDVREHYANGADLIDAFAGKKRQLP
Ga0062595_1020680451	3300004479	Soil	VYVLRNMIGGVKRSGLVLDLQVIRPNPVVEANGRRLSEIDGEPLFALADAARAAVDAAIDAGQLVEEAVDDHDVRKHYASG
Ga0066674_102022461	3300005166	Soil	MISSIKPGGLVLDLQVIRPDPRVEVKGRLVCEIDGQPLFRLADAAAAAVDASIAGGRLLEEAVQDHDVRKHYRTGADLAADFAG
Ga0066672_101683351	3300005167	Soil	VHVLRNMVEAVKPGGLVLDLQVIRPNPRAEVDGRLICELDGEPLFRKADAAAAAVDGSVAAGRLLEEAVDDHDVLKHYENGADLMDDWARSG
Ga0066672_109819061	3300005167	Soil	VYVLGQMVEAVKPGGLVLDLQVIRPDPIVEVDGEFVCEIDGEPLFRTADAATAAIDALIAEGKLLEQAVDDHEVREHYADGVDLIDEFA
Ga0066688_103682623	3300005178	Soil	VHVLRNMVEAVRPGGLVLDLQVIRPNPRAEVDGRLICELDGEPLFRKADAAAAAVDGSVAAGRLLEEAVDDHDVLKHYENGADLMDDWAR
Ga0066688_105938202	3300005178	Soil	VHVLDNMVQAVKTGGLVLDLQVIRVNPRVETGGGLLCEIDGEPLFRKADAATGAVDGLVAGSRLVEEAVDDHD
Ga0066678_107281281	3300005181	Soil	VHVLRNMITAVKPGGLVLDLQVIRPDPRVEVDGCIVCEIDGQPLFRLADAAAEAVDAAVAQGRLREEAVDDHDVRKHYRTGA
Ga0070661_1019293961	3300005344	Corn Rhizosphere	MVRAIRPGGDVLDLQVIRPNPTVEVGGQVVCEIDGEPLFRMADAATAAVDALIRTGELVEQAIDDHDVREHYANGADLI
Ga0070709_115621791	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VHVLRNMIEAVRPSGVVLDLQVIRPNPRVECGASLVCEIDGEPLFRQADAATAAVDDLIRHGVLAEEAVDEHDVLKHYSDGGDLVDDFEGRDRQLPVEALPRLR
Ga0070705_1016424362	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VHVLRNMVDGVKPGGLVLDLQVIRPNPVVEANGEQLSEIDGEPLFVLADAATAAVDAAVAAGRLVEQGVDDHDVRKHYPSGADLVDDFAAKK
Ga0070678_1021219411	3300005456	Miscanthus Rhizosphere	VDVLRNMVDAVRPDGMVLDLQVIRANPTVEVDGLIICEIDGEPLFQKADAAAAAIDELVDAGRLLEQATDDHDVRMHYANGTELIDDYADRKR
Ga0070707_1012617471	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VHVLSNMVTAVRPGGLVLDLQVIRPDPRVEVDGRVVCEIDGQPLFRLADAAAAAVDAAIAEGRLFEEAVDDHDVRKHYRAGVDVVADFAGKERR
Ga0070707_1014008372	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VHVLRNMVEALKPGGLVLDLQVIRPNPVVEVDGDAVCEIDGEPLFVMADAATVAVDAFIAEGRLVEEAVDDHDARKHYADGADLID
Ga0070707_1021308252	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MVTAIRSGGVILDLQVIRPNPLVESARELICEIDGEPLFERADAATAAVDTLIRSGRLIQEATDDHDVRKHYPNGTDLVDDFEGKAR
Ga0070741_106236501	3300005529	Surface Soil	VHVLRNMVDAVRPGGIVLDLQVIRPNPVVEADGEVLSEIDGGPLFARADAATAAVDDAVAGGRLVEEARDDHDARTHFATGAELVDHVADGLRELPA
Ga0066695_103336583	3300005553	Soil	VHVLGQMVEAVKPGGLVLDLQVIRPNPIVEAEGEFLCEIDGEPLFHTADAATAAVDALVATGHLLAQATDDHDVREHYDDGADLITGFADKRRQLPA
Ga0066692_108531801	3300005555	Soil	VYVLRNMVISVKPGGLVFDLQVIRPDPRVEVDSRVVCEIDGQPLFRLADAAAAAVDASITEGSLHEEAVDDHDVRKHYRTGADLVADFAGKERKLPADS
Ga0066670_103498934	3300005560	Soil	VHVLRNMVEAIKLGGVVLDLQVIRPNPNVEVDGQVLCAIDGEPLFLLADAATAAVDSFILKGRLVEEAIEDHDVLKHYAN
Ga0066670_107141551	3300005560	Soil	VYVLRNMVEAVRPGGTVLDLQVIRPNPRVEVGDRLVCEIDGEPLFRRADAATAAVDALIGQGRLVELALDDHDVRKHYSDGADLVDDFEDKE
Ga0066703_106028992	3300005568	Soil	VHVLRNMVEAVKLGGVVLDLQVIRPDPNVEVDGQVLCAIDGEPLFRLADAATAAVDSFILDGRLVEEAVDDHDVLKHYANGADLVDDFAEKERRIPDRAL
Ga0066705_104552982	3300005569	Soil	VHVLRNMVSAVRPGGLVLDLQVIRPNPVVEADGEELSEVDGEPLFALADAARAAVDAAVAVGTLVEEAVDDHDVRKHYPNGPDVIDDFAEKKRRVSTRRVSAPLRGRA*
Ga0066903_1008837271	3300005764	Tropical Forest Soil	VHVLHNMVKAVRPGGTVLDLQVIRPNPRVEVAERFVCEVDGSPLFRKADAATAAIDSLIAAGRLVEEAIDDHDVRTQFP
Ga0075287_10518681	3300005873	Rice Paddy Soil	VHVLGHMVDAIKSGGVVLDLQVIRPNPTVEVDGHVVCEIDGEPLFHMADAATAAVDALVRVGRLLEHTVDDHDVRKHYADGAELVDDFVGKKRRLPAEALSDL
Ga0075283_10102973	3300005891	Rice Paddy Soil	VHVLGQMVEAVKPGGHVLDLQVIRPNPVVEVDGRTICEINGEPLFVSADAATAAVDALAHDGVLVEEAVDDHDVREHYTDGNDL
Ga0075272_11041171	3300005900	Rice Paddy Soil	VHVLGQMVEAVKPGGHVLDLQVIRPNPVVEVDGRTVCEIDGEPLFVSADAATAAVDALVRYGSLVVEAVDDHDVREHYTDG
Ga0075273_100289381	3300005902	Rice Paddy Soil	VHVLGQMVEAVKPGGHVLDLQVIRPNPVVEVDGRTICEINGEPLFVSADAATAAVDALAHDGVLVEEAVDDHDVREHYTDGNDLVSAYATKRRRLPPDEF
Ga0081539_104798991	3300005985	Tabebuia Heterophylla Rhizosphere	VHALRHTLSALRAGGTVLDLQVTRPNPRVEVAGRFVCEIDGEPLFQWADAARAAVDGAVAAGLLQEEAVDDHDVRSHYD
Ga0066656_107415191	3300006034	Soil	VHVLRNMVEAVKPGGVVLDLQVIRPNPLVEVDSRVLCEIDGAPLFRLADAAVAAVDSFVAARRLLEEALDDHDVLKHY
Ga0075028_1008189601	3300006050	Watersheds	VLDLQVIRPNPAVEVDGRVVCEIDGEQLFRTADAATAAIDALIREGRLVEEAIDDHDVREHYDNGRALLDDFAEGKRRLPDRAMP
Ga0075017_1007970231	3300006059	Watersheds	VHVLRKMIEAVKRGGVVLDLQVIRPNPVVEVNGQVVCEIDGEPLFRTADAATAAVDALIGNGRLVEQAIDDHDVHEHYDNGPELLADFAGKKRSVPD
Ga0066660_113587622	3300006800	Soil	VEPKDVVNVLHNMVTAVRPGGVVLDLQVIRPDPRVEIDGSLVCEIDGGPLFRKADAATAAVEALIRTRRLVEEAVDDHEVRKHYDNG
Ga0079221_108994842	3300006804	Agricultural Soil	MVEAVRPGGLVLDLQVIRPNPVVESGGVALCEIDGEPLFGNADAATAAVDACVRGGRLREEAVDDHDVRKHYRSGAAVVDCLLTEPPTADA
Ga0075424_1015138291	3300006904	Populus Rhizosphere	VHVLRNMVGAVKPGGLVLDLQVIRPDPVVESDGAVVCTIGGEPLFRTADAAAAAIDAMVADGLLIEQAVDDHDVRKHYANGPELVDDFADKQRRLSD
Ga0075435_1015843012	3300007076	Populus Rhizosphere	VHVLRNMVGAVKPGGLVLDLQVIRPDPVVESDGAVVCTIDGEPLFRTADAAAAAIDAMVAGGRLIEEAVDDHD
Ga0099793_106904461	3300007258	Vadose Zone Soil	MVDAVKTGGVVLDLQVIRPNPHIEVGGRFICELDGEPLFAKADAAAAAVDAAVAAGQLIEEAVDDHDVLKHYADGADLVDDWKRSERRPLGKTT
Ga0066710_1022679761	3300009012	Grasslands Soil	VYVLRNMVEAAKGGATVLDLQVIRPNPQVECDGRVLCEIDGEALFRTADAATAAVDALVLDGRLVEEAVDDHDACMHYVNGADLVDDFA
Ga0099828_107269841	3300009089	Vadose Zone Soil	MVEAVKTGGLVLDLQVIRPNPHVEVGGRFICELDGEPLFAKADAAAAAVDAAVAAGQLVEEAVDDHDVLKHYADGADFVDDWK
Ga0099828_110599861	3300009089	Vadose Zone Soil	MVDGVKPGGLVLDLQVIRPNPRVEVDGQFICEIDGAPRFQMADAATAAVDALIASGRLIEEAIDDHEVLKHYANGVDVLDDCERTKRRPADE
Ga0099827_107461193	3300009090	Vadose Zone Soil	MVDAVKPGGIVLDLQVIRPNPRVESDGRVLCQVDGEPLFHKADAATQAVDDLVVAGRLIEQAVDDHDVCKHYKTGAALVDDFADKERK
Ga0105245_130353031	3300009098	Miscanthus Rhizosphere	VDVLRNLVDAVRPDGIVLDLQVIRPNPTVEVDGLAICEIDGEPLFQKADAATVAIDELVEAGRLVEQATDDHDVRMH
Ga0066709_1020961052	3300009137	Grasslands Soil	MVGAIKPGGAVLDLQVIRPHPHVEVDSRAVCEIDGEPLFRRAEAARAAIDAFILARRLVEQAVDDHDVLKHYRSGADLVDDFADKDRRLPPDATPSLGSIVGPC
Ga0066709_1039591212	3300009137	Grasslands Soil	MVEAFKPGGLVFDLQVIRPNPTVETDGRILCEIDGEPLFRMADAATAAVDALVHTRRLVEQAVDDH
Ga0066709_1045558091	3300009137	Grasslands Soil	MVDAVKPDGLILDLQVIRPNPIVQVDDHTLCEIDGEPLLRQADAATAAVDALVSVSQLVEEAVDDHDVQKHYATGVDLIDDFAGKERRLPGAAV
Ga0114129_103529664	3300009147	Populus Rhizosphere	VHVLRNMVGAVKPGGLVLDLQVIRPDPVVESDGVVVCTIGGEPLFRTADAAAAAIDAMVAGGLLIEQAVDDHDVRKHYRTGWDLVEDFGGKERRVPDEAVVRLS
Ga0114129_116274522	3300009147	Populus Rhizosphere	MVEAVRPSGLVLDLQVIRPDPVVEIDGQVVCAISGGPLFAQADAAVAAIDAAVQDGRLKDEAVDDHDVRKHFATGRDLVA
Ga0105164_105173982	3300009777	Wastewater	MVEAVEPGGIVLDLQVIRPNPVVEVGGREVCEIDGEPLFVSADAATAAVDELIRAGGLVEQAVDDHDVLNHYANGADVVDDFAGKTRRLPDDALPRLRSLA
Ga0134064_105109732	3300010325	Grasslands Soil	MVGAVKPGGVVLDLQVIRPDPCVEADGRVVCAIDGEPLFRLADAAAAAVDRFVADGRLVEEAVEDHDVRKHYRTGADLVFDFAEKERKLS
Ga0134111_104244771	3300010329	Grasslands Soil	MVEALEPEGRVLDLQVIRPNPTVEVDGQIMCEIDGEPLFSMADAATAAIDALIHAGRLVEQAVDDHDVREHYRHGGEL
Ga0126372_130703931	3300010360	Tropical Forest Soil	MVQAVEPGGLVLDLQVIRPNPVVEAGGEPLSEIDGEPLFVMADAAAAAIDSAITTGRLVEEARDDHDVRKHY
Ga0126379_124108062	3300010366	Tropical Forest Soil	MVKAVRPGGTVLDLQVIRPNPRVEVAERFVCEVDGSPLFRKADAAIDSLIAAGRLIEEAIDDHDVRTQFPNGTELVADF
Ga0120152_10938371	3300012011	Permafrost	MVEAVKPGGLVLDLQVIRPNPTAEVDGRAICEIDGEPLFRTADAATAAVDALVRTGRLVEQAIDDHDVRKHYAD
Ga0137388_111142231	3300012189	Vadose Zone Soil	MVEAVRPEGTILDLQVIRPNPRVEVDGRFVCEVDGEPLFRRANAATAAVDDLIRQGQLIEQAVDEHDVRKHYPDGADL
Ga0137364_113953841	3300012198	Vadose Zone Soil	AGGLVLDLQVIRPNPRAEVDGTLVCELDGEPLFRKADAAAAAVDAAVAGGRLVEEAADDHGVPKHYEHGADIVDDWARSERRPPRQR*
Ga0137362_111454672	3300012205	Vadose Zone Soil	MVDAVSPGGAVLDLQVIRPNPVVESDDQALCEIDGEPLFRGADAATAAVDALVLSGHLVEEAVDDHDVRKHYLNGADLIDDFADKQRRL
Ga0137373_112015522	3300012532	Vadose Zone Soil	MVEAVEPGGLVLDLQVIRPNPTVEVDGQAVCEIDGEPLFRAADAATDAVDALVHTRQLVEQAVDDHDVRKHYDYGAELVDDFADKQHSCRSFA
Ga0137397_106894653	3300012685	Vadose Zone Soil	MVDAVKIGGVVLDLQVIRPNPHIEVGGRFICELDGEPLFAKADAAAAAVDAAMASGQLIEEAVDDHDVLKHYANGADLVDDWKR
Ga0157293_103274451	3300012898	Soil	MVAAVKPGGVVLDLQVIRPNPSVEAGARVVCEIDGEPLFRMADAATAAVDTLIRAGGLLEQAVDDHDVRKHYDNGADLVGDFADKKRRLPNRAV
Ga0157292_104278402	3300012900	Soil	MVAAVKPGGVVLDLQVIRPNPSVEAGARVVCEIDGEPLFRMADAATAAVDTLIRAGGLLEQAVDDHDVRKHYDNGADLVDDFA
Ga0157308_100339233	3300012910	Soil	MVAAVKPGGVVLDLQVIRPNPSVEAGARVVCEIDGEPLFRMADAATAAVDTLIRAGGLLEQAVDDQDVRK
Ga0164300_102013792	3300012951	Soil	MVRAIRPGGDVLDLQVIRPNPTVEVGGQVVCEIDGEPLFRMADAATAAVDALIRTGELVEQAIDDHDVREHYANGADLIDAFAGKKRKLPT
Ga0134077_102930853	3300012972	Grasslands Soil	MVDAVKPGGLVLDLQVIRPNPVVEAGGRELCEIDGEPLFVGAEAATAAVDDFVRAGRLVEEAVD
Ga0134087_106156252	3300012977	Grasslands Soil	MVDAVKTGGVVLDLQVIRPNPHIEVGGRSICELDGEPLFAKADAATAAVDAAVAAGQLIEEAVDDHDVLKHYA
Ga0164306_103257731	3300012988	Soil	MAKAVPSGGTVLDLQVIRPNPRVEIGDEFFCEVDGEPLFRRADAAVSAVDALIGQGRLSEQALDDHDVRTHYPAGADLVD
Ga0157373_113371801	3300013100	Corn Rhizosphere	MVGAVRPGGLVLDLQVIRPNPVVETGGVALCEIDGEPLFRNADAATAAIDACIRGGQLREEAVDDHDVRKHYSSGAAVVD
Ga0120172_10815411	3300013765	Permafrost	MVDAVRPGGAVLDLQVIRPNPRVEVDGRVLCEIDGQPLFRKADEATAAVDALVAAGRLVEQEVDDHDVRKHYANGAD
Ga0120193_100267583	3300014965	Terrestrial	MVEAVKPGGLVLDLQVIRPNPTVEVDGQAVCEIDGEPLFRSADAATDAVEALVSTRQLVEQAVDDHDVRKHYDNGAQLV
Ga0134085_104168401	3300015359	Grasslands Soil	VHVLRNVISSVKPGGLVFDLQVIPPDPRVEVDGQLVCEIDGQPLFRLAAAAAAAVDAAIADGRLFEEAVDDHDV
Ga0132256_1025734822	3300015372	Arabidopsis Rhizosphere	VHVLNNMIEAVRPGSIVLDLQVIRPNPRIEAEDRLICEIDGEPLFRRATAAASAIDTLIDKGRLAEQAVDDHDVL
Ga0182034_118020592	3300016371	Soil	VNVLGMMVEAVKPGGVVLDLQVIRPKPRVESGGRVVCEYLANELFRKADAAAAAVDALIARDRFFEEAVDDHDVLQHFDD
Ga0182039_103114921	3300016422	Soil	VHVLHNMVNAVRPAGTVLDLQVIRPNPRVEVAERLICEVDGSPLFRRADAATAATDSLIAAGRLLEVA
Ga0184635_102652882	3300018072	Groundwater Sediment	VNALNQMIKAAARAGLILDLQVIRPNPTFDVDGQVQGEIEGEALFRSADAATAAIDALVESGRLVQQAIDDHDVRKHYANGLELVEDFAGKKRWLPDRSVPYL
Ga0190270_112744141	3300018469	Soil	MVNAVRPGGAILDLQVIRPNPTVEVDDRVVGEIDGASLFRTADAAVAAIDALVESGRLVEQAVDDHEVRKHCANGLELVDDFAGKERLLPDRACITCRS
Ga0173482_100693081	3300019361	Soil	VDVLDTMVRAVRRDGVVLDLQVIRPDPLVEARGRVVCPIDGEPLFRTADAATAAIDALVHTGRLVEDAVDDHEV
Ga0224712_104691012	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MVRAIRPGGDVLDLQVIRPNPTVEVGGQVVCEIDGEPLFRMADAATAAVDALSRTGELVEQAIDDHDVREHYANGADLIDAFAGK
Ga0207656_106610951	3300025321	Corn Rhizosphere	VDVLDTMVRAVRRDGVVLDLQVIRPDPLVEARGRVVCPIDGEPLFRTADAATAAIDALVRTGRLVEDAVDDHEVRKHYVDGPELVADIAGSRRSLPAEA
Ga0207699_114100632	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VHVLRNMIEAVRPSGVVLDLQVIRPNPRVECGASLVCEIDGEPLFRQADAATAAVDDLIRHGVLAEEAVDEHDVLKHYSDG
Ga0207684_115231091	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VHVLRTMIEAVRPGGIVLDLQVIRPNPRAETRAGVVVCELDGRPLFVKADAAAAAVDAALADGRLADEAVDDHDVLKHFPNGADLVRDFSRVGRVPLG
Ga0207649_116596332	3300025920	Corn Rhizosphere	MVRAIRPGGDVLDLQVIRPNPTVEVGGQVVCEIDGEPLFRMADAATAAVDALIRTGELVEQAIDDHDVREHYANGADLID
Ga0207664_118775172	3300025929	Agricultural Soil	VHVLRNMIEAVKRGGPILDLQVIRPNPVIEADGEVLGEIDGEPLFALADAATTAVDAAVAAGRLVEEA
Ga0209235_10076789	3300026296	Grasslands Soil	VHVLDNMVQAVKTGGLVLDLQVIRVNPRVETGGGLLCEIDGEPLFRKADAATAAVDRLVAAGCLVEEAVDDHDVLKHYL
Ga0209239_13039552	3300026310	Grasslands Soil	VHVLRNMVGAVKPGGLVLDLQVIRPDPVVESDGVVVCTIDGEPLFRTADAATAAIDAMVADGQLIEQAVDDHDVRNHYANGRELVDDFA
Ga0209761_13284601	3300026313	Grasslands Soil	VHVLRNMVEAVKPGGLVLDLQVIRPNPTAEVDGRVVCEIDGEPLFRTADAATAAVDALIRAGRLVEQAVDDHDVCEHYDNGADLVDDF
Ga0208995_10135862	3300027388	Forest Soil	MSLVANLLRADHVVLDLQVIRPNPIVEVDGEFVCEIDGEPLFRTADAATAAIDTLVVGGGLLEQAIDDHDVRQHYDDGVDLIEAHADKRRQLPGVAL
Ga0209178_13731991	3300027725	Agricultural Soil	MVEAVRPGGLVLDLQVIRPNPVVESGGVALCEIDGEPLFGNADAATAAVDACVRGGRLREEAVDDHDVRKH
Ga0209798_101041493	3300027843	Wetland Sediment	VNVLERMIGAVEPGGIVLDLQVIQPNPVVEVEGRVVCEIDGEALLAAADAAAAAVNASIRAGRVVERAVDEHDVLSHFPSGAA
Ga0209283_104067883	3300027875	Vadose Zone Soil	MVEAVKTGGLVLDLQVIRPNPHVEVGGRFICELDGEPLFAKADAAAAAVDAAVAAGQLVEEAVDDHDVLKHYADGADFVDDWKRSQR
Ga0209283_109917311	3300027875	Vadose Zone Soil	VHVLSNMVDGVKPGGLVLDLQVIRPNPRVEVDGQFICEIDGAPRFQMADAATAAVDALIASGRLIEEAIDDHEVLKHY
Ga0209590_103462213	3300027882	Vadose Zone Soil	MVDAVKPGGIVLDLQVIRPNPQVESGGRVLCEIDGEPLFRMADAATAAVDALVLAGELVEKAVDDHDVRKHYVNGADLVDDFADKERRLPDA
Ga0307305_103266513	3300028807	Soil	VHVLRNMVGAVKQGGVVLDLQVIRPNPLVEVDSRILCEIDGSPLFRLADAADAAVNSFVAAGRLLGEKVDDHDVLKHYANGADLVGDFADKERRISEQAV
Ga0307498_101637931	3300031170	Soil	VHVLRNMVEAVKPGGLVLDLQVIRPNPTVEAVKRVVCEIDGEPLFRMADAATAAIDMLIRTGRLVEQAIDDHDVREHYANGSEVVDDFAGK
Ga0318541_105588721	3300031545	Soil	MVRAVKPGGLVLDLQAIRPNPLIEAAGRTIWEIDGEPLFRMADAAAAAVDALMRSGKLEEQAYDEHNVLRHYDDGADLIEAFSEKRNKLPPE
Ga0318571_104403781	3300031549	Soil	MVRAVKPGGLVLDLQAIRPNPLIEAAGRTIWEIDGEPLFRMADAAAAAVDALMRSGKLEEQAYDEHNVLRHYDDGADLI
Ga0318561_102874612	3300031679	Soil	MVYAVRPGGTVLDLQVIRPNPRVEVAERLICEVDGSPLFRRADAATAAIDALIAAGRLLEEAVDDHDVRTHYQAAAFTRALPPKR
Ga0318502_101321234	3300031747	Soil	VHVLHNMVYAVRPGGTVLDLQVIRPNPRVEVAERLICEVDGSPLFRRADAATAATDSLIAAGRLLEVAVDDHDVRTHYPSGADLVDDFEDKQRR
Ga0318521_107144431	3300031770	Soil	MVQAVKPGGHILDLQVIRPNPRIESGGRFLGEVDGEPLLRKADAATAAIDAQIEQGQLVEEDVDDHDVLQHFATGAELIADFANRERRLH
Ga0318550_104166811	3300031797	Soil	MVYAVRPGGTVLDLQVIRPNPRVEVAERLICEVDGSPLFRRADAATAAIDALIAAGRLLEEAVDDHDVRTHYP
Ga0318565_101660681	3300031799	Soil	VHVLHNMVNAVRPAGTVLDLQVIRPNPRVEVAERLICEVDGSPLFRRADAATAAIDALIAAGRLLEEAVDDHDVRTHYPSGADLVDDFEDKQRRLPE
Ga0318551_107138292	3300031896	Soil	MVYAVRPGGTVLDLQVIRPNPRVEVAERLICEVDGSPLFRRADAATAATDSLIAAGRLLEVAVDDHDVRTHY
Ga0306921_105853411	3300031912	Soil	MVRAVKPGGLVLDLQAIRPNPLIEAAGRTIWEIDGEPLFRMADAAAAAVDALMRSGKLEEQAYDEHNVLRHYDDGADLIEAFSEKR
Ga0310916_112609051	3300031942	Soil	MVRAVKPGGLVLDLQAIRPNPLIEAAGRTIWEIDGEPLFRMADAAAAAVDALMRSGKLEEQAYDEHNVLRHYDDGADLIEAFS
Ga0310913_105970451	3300031945	Soil	MVNAVRPGGTVLDLQVIRPNPRVEVAERFVCEVDGSPLFRRADGATAAIDTLIAAGQLFEEAVDDHDVRTHYPSGADLVDD
Ga0310909_111021951	3300031947	Soil	VHVLHNMVNAVRPGGTVLDLQVIRPNPRVEVAERFVCEVDGSPLFRRADGATAAIDTLIAAGQLFEEAVDDHDVRTHYPSGADLVDDFEDK
Ga0318569_103533431	3300032010	Soil	VHVLHNMVNAVRPGGTVLDLQVIRPNPRVEVAERFVCEVDGSPLFRRADGATAAIDTLIAAGQLFEEAVDDHD
Ga0318556_106215251	3300032043	Soil	VHVLHNMVNAVRPAGTVLDLQVIRPNPRVEVAERLICEVDGSPLFRRADAATAAIDALIAAGRLLEEAVDDHDVR
Ga0306924_104128685	3300032076	Soil	VHVLHNMVYAVRPGGTVLDLQVIRPNPRVEVAERLICEVDGSPLFRRADAATAATDSLIAAGRLLEVAVDDHDVRTHYPSGADLVDDFEDK
Ga0306920_1008118641	3300032261	Soil	VHVLHNMVNAVRPGGTVLDLQVIRPNPRVEVAERFVCEVDGSPLFRRADGATAAIDTLIAAGQLFEEAV
Ga0306920_1022721801	3300032261	Soil	MVKAVKPGGFVLDLQVIRPNPVIEADGRRLCEIDGEPLFRKADAATAAVDALVQSGELINDESIEFDSRTHYRD
Ga0310812_101381953	3300032421	Soil	VHVLHTMVDAVRPSGLVLDLQVIRPDPVVEIDGRVVCGIRGGRLFAQADAAVAAIDALIRTGELVEQGVDDHDVRKHYATGRDLVADFATKERRLP
Ga0214472_110100303	3300033407	Soil	VDVLRNMAAAARSGGLILDLQVIRPDPVVEVDGRAMCEIDGEPLFATADAATAAVDALVAAGRLEEEASDDHDVRKHYAT
Ga0364940_0133202_2_316	3300034164	Sediment	MIDAVRPGGIALDLQVIRPNPRAESDKVVICEIDGTPLFAKADAAVAAVDAHIAAGRLVEEAVDDHDVLKHYANGVDLLDDWERSDRRPLWDGSDRLREIHRSCV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078431

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences