Metagenome / Metatranscriptome Family F078369

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078369
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	54 residues
Representative Sequence	MPRIIQLTPDGGGRYIAVDRDGDLWRGETKRQKDGGEEYIQWKPLPSQFPRDN
Number of Associated Samples	86
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.26 %
% of genes near scaffold ends (potentially truncated)	25.00 %
% of genes from short scaffolds (< 2000 bps)	80.17 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.759 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (22.414 % of family members)
Environment Ontology (ENVO)	Unclassified (26.724 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.069 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 37.04% Coil/Unstructured: 62.96%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00589	Phage_integrase	4.31
PF00300	His_Phos_1	2.59
PF04392	ABC_sub_bind	1.72
PF00011	HSP20	1.72
PF01381	HTH_3	1.72
PF03061	4HBT	0.86
PF03200	Glyco_hydro_63	0.86
PF01179	Cu_amine_oxid	0.86
PF02769	AIRS_C	0.86
PF03773	ArsP_1	0.86
PF01068	DNA_ligase_A_M	0.86
PF02899	Phage_int_SAM_1	0.86
PF01070	FMN_dh	0.86
PF12172	DUF35_N	0.86
PF08241	Methyltransf_11	0.86
PF01268	FTHFS	0.86
PF14238	DUF4340	0.86
PF06348	DUF1059	0.86
PF00005	ABC_tran	0.86
PF00211	Guanylate_cyc	0.86
PF07238	PilZ	0.86
PF13302	Acetyltransf_3	0.86
PF11127	DUF2892	0.86
PF00892	EamA	0.86
PF07681	DoxX	0.86
PF12832	MFS_1_like	0.86
PF14572	Pribosyl_synth	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	1.72
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.72
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.86
COG0701	Uncharacterized membrane protein YraQ, UPF0718 family	Function unknown [S]	0.86
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.86
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.86
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.86
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.86
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.86
COG2759	Formyltetrahydrofolate synthetase	Nucleotide transport and metabolism [F]	0.86
COG3733	Cu2+-containing amine oxidase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.86
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.86
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.86
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
All Organisms	root	All Organisms	42.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
cellular organisms	root	All Organisms → cellular organisms	42.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	15.52 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.45 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	15.52 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.72 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	15.52 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	12.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.72 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	12.07 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.72 %
Deltaproteobacteria bacterium ADurb.Bin022	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin022	0.86 %
Candidatus Rokubacteria bacterium GWC2_70_16	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium GWC2_70_16	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101589564	Not Available	1378	Open in IMG/M
3300000559\|F14TC_101632750	Not Available	904	Open in IMG/M
3300002245\|JGIcombinedJ26739_100474915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1128	Open in IMG/M
3300002245\|JGIcombinedJ26739_101629558	Not Available	543	Open in IMG/M
3300005174\|Ga0066680_10262009	Not Available	1100	Open in IMG/M
3300005332\|Ga0066388_100278582	All Organisms → cellular organisms → Bacteria	2315	Open in IMG/M
3300005332\|Ga0066388_102039966	Not Available	1030	Open in IMG/M
3300005406\|Ga0070703_10071977	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1157	Open in IMG/M
3300005406\|Ga0070703_10170384	Not Available	833	Open in IMG/M
3300005444\|Ga0070694_100005776	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7505	Open in IMG/M
3300005445\|Ga0070708_101112770	Not Available	740	Open in IMG/M
3300005445\|Ga0070708_101705788	Not Available	585	Open in IMG/M
3300005467\|Ga0070706_100027546	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5230	Open in IMG/M
3300005467\|Ga0070706_100268825	All Organisms → cellular organisms → Bacteria	1591	Open in IMG/M
3300005467\|Ga0070706_100411263	Not Available	1259	Open in IMG/M
3300005468\|Ga0070707_100061690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3596	Open in IMG/M
3300005468\|Ga0070707_100123180	All Organisms → cellular organisms → Bacteria	2517	Open in IMG/M
3300005468\|Ga0070707_100213116	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1882	Open in IMG/M
3300005471\|Ga0070698_100072232	Not Available	3459	Open in IMG/M
3300005518\|Ga0070699_100927853	Not Available	798	Open in IMG/M
3300005526\|Ga0073909_10380706	Not Available	660	Open in IMG/M
3300005546\|Ga0070696_100436567	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300005713\|Ga0066905_100465315	Not Available	1043	Open in IMG/M
3300005876\|Ga0075300_1006130	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1244	Open in IMG/M
3300005876\|Ga0075300_1008971	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1101	Open in IMG/M
3300005876\|Ga0075300_1044635	Not Available	628	Open in IMG/M
3300005921\|Ga0070766_10688948	Not Available	691	Open in IMG/M
3300006041\|Ga0075023_100059238	Not Available	1224	Open in IMG/M
3300006050\|Ga0075028_100629150	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	640	Open in IMG/M
3300006057\|Ga0075026_100823541	Not Available	565	Open in IMG/M
3300006806\|Ga0079220_10820385	Not Available	707	Open in IMG/M
3300006954\|Ga0079219_12214762	Not Available	529	Open in IMG/M
3300007255\|Ga0099791_10220035	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin022	897	Open in IMG/M
3300009090\|Ga0099827_10091788	All Organisms → cellular organisms → Bacteria	2396	Open in IMG/M
3300010360\|Ga0126372_10047973	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium GWC2_70_16	2864	Open in IMG/M
3300010362\|Ga0126377_12732323	Not Available	568	Open in IMG/M
3300010400\|Ga0134122_10199844	All Organisms → cellular organisms → Bacteria	1658	Open in IMG/M
3300010403\|Ga0134123_11786420	Not Available	668	Open in IMG/M
3300012202\|Ga0137363_11212540	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	641	Open in IMG/M
3300012202\|Ga0137363_11556511	Not Available	553	Open in IMG/M
3300012361\|Ga0137360_10071741	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2566	Open in IMG/M
3300012361\|Ga0137360_10939356	Not Available	746	Open in IMG/M
3300012582\|Ga0137358_10225207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1278	Open in IMG/M
3300012922\|Ga0137394_10682758	Not Available	865	Open in IMG/M
3300012931\|Ga0153915_10011048	All Organisms → cellular organisms → Bacteria	8647	Open in IMG/M
3300012931\|Ga0153915_10389745	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300014318\|Ga0075351_1119667	Not Available	591	Open in IMG/M
3300015371\|Ga0132258_10000043	All Organisms → cellular organisms → Bacteria	110941	Open in IMG/M
3300015371\|Ga0132258_11179372	Not Available	1936	Open in IMG/M
3300015373\|Ga0132257_102099165	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300017959\|Ga0187779_10049063	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2461	Open in IMG/M
3300017973\|Ga0187780_10436711	Not Available	931	Open in IMG/M
3300017974\|Ga0187777_10763239	Not Available	689	Open in IMG/M
3300017994\|Ga0187822_10261930	Not Available	598	Open in IMG/M
3300017997\|Ga0184610_1317349	Not Available	511	Open in IMG/M
3300018027\|Ga0184605_10420196	Not Available	594	Open in IMG/M
3300018429\|Ga0190272_10894276	Not Available	832	Open in IMG/M
3300019873\|Ga0193700_1046830	Not Available	688	Open in IMG/M
3300019879\|Ga0193723_1118066	Not Available	738	Open in IMG/M
3300019883\|Ga0193725_1098539	Not Available	694	Open in IMG/M
3300019885\|Ga0193747_1143038	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300019888\|Ga0193751_1114202	Not Available	1018	Open in IMG/M
3300020004\|Ga0193755_1003829	Not Available	4790	Open in IMG/M
3300020579\|Ga0210407_10026405	All Organisms → cellular organisms → Bacteria	4318	Open in IMG/M
3300021088\|Ga0210404_10297971	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	886	Open in IMG/M
3300021403\|Ga0210397_10373300	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1062	Open in IMG/M
3300021478\|Ga0210402_10512938	Not Available	1113	Open in IMG/M
3300021559\|Ga0210409_10249505	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1607	Open in IMG/M
3300022531\|Ga0242660_1127340	Not Available	648	Open in IMG/M
3300025885\|Ga0207653_10078146	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1141	Open in IMG/M
3300025885\|Ga0207653_10271368	Not Available	653	Open in IMG/M
3300025910\|Ga0207684_10002447	All Organisms → cellular organisms → Bacteria	18730	Open in IMG/M
3300025910\|Ga0207684_10077601	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2825	Open in IMG/M
3300025910\|Ga0207684_10166378	Not Available	1900	Open in IMG/M
3300025910\|Ga0207684_10246558	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M
3300025910\|Ga0207684_10487744	Not Available	1057	Open in IMG/M
3300025910\|Ga0207684_10810048	Not Available	791	Open in IMG/M
3300025910\|Ga0207684_10977156	Not Available	709	Open in IMG/M
3300025922\|Ga0207646_10043259	All Organisms → cellular organisms → Bacteria	4045	Open in IMG/M
3300025922\|Ga0207646_10141486	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2167	Open in IMG/M
3300025922\|Ga0207646_10279073	Not Available	1510	Open in IMG/M
3300026015\|Ga0208286_1021045	Not Available	534	Open in IMG/M
3300026345\|Ga0257148_1023647	Not Available	511	Open in IMG/M
3300026355\|Ga0257149_1028569	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300026359\|Ga0257163_1016493	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300026475\|Ga0257147_1069873	Not Available	537	Open in IMG/M
3300026514\|Ga0257168_1025545	Not Available	1243	Open in IMG/M
3300026551\|Ga0209648_10451582	Not Available	797	Open in IMG/M
3300027651\|Ga0209217_1214348	Not Available	513	Open in IMG/M
3300027651\|Ga0209217_1215076	Not Available	512	Open in IMG/M
3300027655\|Ga0209388_1049514	Not Available	1213	Open in IMG/M
3300027655\|Ga0209388_1091332	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300027671\|Ga0209588_1227849	Not Available	574	Open in IMG/M
3300027846\|Ga0209180_10733249	Not Available	534	Open in IMG/M
3300027882\|Ga0209590_10165584	Not Available	1380	Open in IMG/M
3300027889\|Ga0209380_10775074	Not Available	545	Open in IMG/M
3300027894\|Ga0209068_10168959	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300028047\|Ga0209526_10007575	All Organisms → cellular organisms → Bacteria	7472	Open in IMG/M
3300028792\|Ga0307504_10072852	Not Available	1036	Open in IMG/M
3300028792\|Ga0307504_10353996	Not Available	566	Open in IMG/M
3300028814\|Ga0307302_10704619	Not Available	502	Open in IMG/M
3300029636\|Ga0222749_10126612	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300030006\|Ga0299907_10356164	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1184	Open in IMG/M
3300031421\|Ga0308194_10188127	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	661	Open in IMG/M
3300031716\|Ga0310813_10295948	All Organisms → cellular organisms → Bacteria	1364	Open in IMG/M
3300031716\|Ga0310813_10598426	Not Available	975	Open in IMG/M
3300032180\|Ga0307471_101359482	Not Available	871	Open in IMG/M
3300033433\|Ga0326726_10055173	All Organisms → cellular organisms → Bacteria	3480	Open in IMG/M
3300033433\|Ga0326726_10074224	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3004	Open in IMG/M
3300033433\|Ga0326726_11055528	Not Available	789	Open in IMG/M
3300033433\|Ga0326726_12212854	Not Available	534	Open in IMG/M
3300033475\|Ga0310811_10748820	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300033480\|Ga0316620_12108535	Not Available	561	Open in IMG/M
3300033486\|Ga0316624_10346305	Not Available	1223	Open in IMG/M
3300034090\|Ga0326723_0004217	All Organisms → cellular organisms → Bacteria	5378	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.41%
Host-Associated	Host-Associated	2.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.66%
Aquatic	Environmental → Aquatic	7.76%
Plants	Host-Associated → Plants	2.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.34%
Sediment	Environmental → Aquatic → Sediment	5.17%
Peat	Environmental → Terrestrial → Peat	4.31%
Freshwater	Environmental → Aquatic → Freshwater	2.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.59%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.97%
Loam	Environmental → Terrestrial → Soil → Loam	32.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.31%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.59%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	22.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.48%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.86%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	22.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.34%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.31%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	4.31%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.45%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	3.45%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.59%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.59%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005876	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026015	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401 (SPAdes)	Environmental	Open in IMG/M
3300026345	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-A	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1015895645	3300000364	Soil	MPRIIQLSPDGGGRYIAVDRDGEIWRGETKRAKGGGEEYIVWKPLHSEFTRDN*
F14TC_1016327503	3300000559	Soil	MPRIIQLSPDGGGRYIAVDRDGEIWRGETKRAKGGGEEYIVWKPLHSEFTSDN*
JGIcombinedJ26739_1004749152	3300002245	Forest Soil	MPRLLQVAPDGGGRYIAVDRDGQIWRGEAKRKKPDGTEVIAWTPMPSEFPSGA*
JGIcombinedJ26739_1016295581	3300002245	Forest Soil	MPRIIQLAPDGGGRYIAVDRDGDLWRGETMRQKDGGQEYIQWKPLPSQFPTEN*
Ga0066680_102620092	3300005174	Soil	MPRLLQVAPDGGGRYIAVDRDGQIWRGEAKRSKPDGTEFIAWTPMRSEFPSGA*
Ga0066388_1002785821	3300005332	Tropical Forest Soil	EGKENVMPRIIQLAPDGSGRYIAVDRDGDLWRGETKRQTAGGEEYIQWKPLPSEFPRDD*
Ga0066388_1020399662	3300005332	Tropical Forest Soil	MPRIIHLAPDGSGRYIAVDRDGDLWRGETKRQKAGDEEYIQWKPLPSEFPRDD*
Ga0070703_100719771	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MPRLLQVAPDGGGRYIAVDRDGQIWRGEAKRSKLDGTEVIAWKPMPSEFPSGA*
Ga0070703_101703841	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQVAPDGGGRYIAVDRDGDFWRGETKRQKEGGEEYIQWKPLPAQFPRDNN*
Ga0070694_1000057761	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VARGLAAGPAKGKENGMPRIIQLAPDGGGRYIAVDRDGQVWRGETKRTKPDGVEFIAWVPLPSEFPRGTP*
Ga0070708_1011127702	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQLAPDGGGRYIAVDRDGDLWRGETKRQKEGGEEYVQWKPLPAQFPRDNN*
Ga0070708_1017057882	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQLAPDGGGRYIAVDRDGQVWRGETQRPKSGGDEYITWKPLHSEFPRSN*
Ga0070706_1000275465	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQLAPDGGGRYIAVDRDGDLWRGETKRQKDGGEEYIQWKPLPSQFPRDS*
Ga0070706_1002688251	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	EVKERGMPRIIQLSPDGGGRYIAVDHEAQVWRGETKRPTSGGEEYIVWKPRHSEFAQDN*
Ga0070706_1004112631	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQLTPDGGGRYIAVDGDAQVWRGETQRPKSGGDEYITWRPLHSEFPRSN*
Ga0070707_1000616904	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQLSPDGGGRYIAVDRDGQVWRGETKRGKTDGEEYIAWKPLQSEFPKDA*
Ga0070707_1001231804	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQLSPDGGGRYIAVDHEAQVWRGETKRPTSGGEEYIVWKPRHSEFAQDN*
Ga0070707_1002131162	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQLAPDGGGRYIAVDRDGDLWRGETKRQTSGGEEYIEWKPLPAQFPRDN*
Ga0070698_1000722323	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQLSPDGGGRYIAVDRDGQVCRGETKRSKPDGAEYIAWKPLPSQFPKDT*
Ga0070699_1009278531	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	LAPDGGGRYIAVDRDGDLWRGETKRQKDGNQEYIQWKPLPSQFPRDN*
Ga0073909_103807061	3300005526	Surface Soil	MPRLLQVAPDGGGRYIAVDRDGQIWRGEAKRTKPDGTEFIAWTPMPSEFPSGA*
Ga0070696_1004365673	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MPRLLHVAPDGGGRYIAVDRDGQIWRGETKRRKPDGNEVIAWTPMPSEFPSGA*
Ga0066905_1004653154	3300005713	Tropical Forest Soil	MPRIIQVTPDGGGRYIAVDRDGELWRGETKRQEDGGAEYIAWKPLHSEFPRDNR*
Ga0075300_10061303	3300005876	Rice Paddy Soil	MPRILQVAPDGGGRYIAVDRDGQIWRGDTTRPKSGEEYIVWKPLRSEFPKGT*
Ga0075300_10089711	3300005876	Rice Paddy Soil	IIQLAPDGGGRYIAVDRDGQVWRGETKRTKPDGVEFIAWVPLPSEFPRGTP*
Ga0075300_10446352	3300005876	Rice Paddy Soil	MPRLLQVAPDGGGRYIAVDRDGQIWRGDTTRAKGGGEEYIVWKPLRSEFPRDS*
Ga0070766_106889482	3300005921	Soil	MARIIQVAPDGSGRYIAVDRDGELWRGETKRQKEGAEEYIQWKPLPSQFPRHNN*
Ga0075023_1000592381	3300006041	Watersheds	MPRLLQVVPDGGGRYIAVDRDGQIWRGEAKRSKPEGPEVIAWTPLRSEFPSGA*
Ga0075028_1006291502	3300006050	Watersheds	MPRLLQVAPDGGGRYIAVDRDGQIWRGEAKRSKPDGTEVIAWTPMPSEFPSGA*
Ga0075026_1008235411	3300006057	Watersheds	MPRIIQLAPDGGGRYIAVDRDGELWRGETMRQKDGGQEYIQWKPLPSQFPRDNQ*
Ga0079220_108203853	3300006806	Agricultural Soil	MPRIIQVAPDGGGRYIAVDRDGELWRGETKRQKNGGEEYIAWRPLRSAFPEDTR*
Ga0079219_122147623	3300006954	Agricultural Soil	MPRIIQVAPDGGGRYIAVDRDGELWRGETKRQKNGGEEYIAWRPLRSAFPEDT
Ga0099791_102200351	3300007255	Vadose Zone Soil	MPRIIQLTPAGGGRYIAVDRDGDLWRGETKRQTSGGEEYIEWKPLPAQFPRDN*
Ga0099827_100917883	3300009090	Vadose Zone Soil	MPRIIQLSPDGGGRYIAVDRDGQVWRGETKRGKTDGEEYIAWKPLQSEFPKNT*
Ga0126372_100479733	3300010360	Tropical Forest Soil	MPRIIQLAPDGSGRYIAVDRDGDLWRGETKRQTAGGEEYIQWKPLPSEFPRDD*
Ga0126377_127323232	3300010362	Tropical Forest Soil	MPRIIQVTPDGGGRYIAVDRDGELWRGETKRQEDGGPECIAWKPLHSEFPRDNR*
Ga0134122_101998444	3300010400	Terrestrial Soil	VAPDGGGRYIAVDRDGQIWRGETKRRKPDGNEVIAWTPMPSEFPSGA*
Ga0134123_117864201	3300010403	Terrestrial Soil	MPRLLQVAPDGGGRYIAVDRDGQIWRGEAKRSKPDGTEVIVAD
Ga0137363_112125401	3300012202	Vadose Zone Soil	MPRLLQVAPDGGGRYIAVDRDGQIWRGEAKRSKPDGTEFIAWTPMRSEFPSGT*
Ga0137363_115565112	3300012202	Vadose Zone Soil	MPRIIQLSPDGGGRYIAVDHEAQGWRAETKRPTSGGEEYIVWKPRHSEFPRDN*
Ga0137360_100717412	3300012361	Vadose Zone Soil	MPRLLQVAPDGGGRYIAVDRDGQIWRGEAKRSKPDGTEFIAWTPMRSEFPSA*
Ga0137360_109393563	3300012361	Vadose Zone Soil	MPRIIQLSPDGGGRYIAVDHEAQVWRGETKRPTSGGEEYIVWKPRHSEFPRDN*
Ga0137358_102252071	3300012582	Vadose Zone Soil	MPRLLQVAPDGGGRYIAVDRDGQIWRGEAKRSKPDGTEFIAWTP
Ga0137394_106827582	3300012922	Vadose Zone Soil	MPRIIQLTPDGGGRYIAVDRDGDLCPGETKGQKEGGEEYIQWTPLPAQFPRDN*
Ga0153915_100110484	3300012931	Freshwater Wetlands	MPRIIQLAPDGGGRYIAVDRDGDLWRGETKHQKDGGEEYIAWTPLPAQFPRDN*
Ga0153915_103897453	3300012931	Freshwater Wetlands	MPRIIQLTPDGGGRYIAVDRDGDLWRGETKRQKDGGEEYIQWKPLPSQFPRDN*
Ga0075351_11196671	3300014318	Natural And Restored Wetlands	MPRIIQLTPDGGGRYIAVDRGGDLWRGETKRQTRGGEEHIEWKPLPAQ
Ga0132258_100000438	3300015371	Arabidopsis Rhizosphere	MPRIIQLSPDGGGRYIAVDRDGELWRGETKRPKSGGEEYIVWKPLHSEFPRDN*
Ga0132258_111793723	3300015371	Arabidopsis Rhizosphere	MPRIIQLTPDGGGRYIAVDRDGDLWRGETKRQKEGGEEYIQWKPLPSHFPRDD*
Ga0132257_1020991651	3300015373	Arabidopsis Rhizosphere	ELRLGRREETQAMPRIIQLSPDGGGRYIAVDRDGELWRGETKRPKSGGEEYIVWKPLHSEFPRDN*
Ga0187779_100490631	3300017959	Tropical Peatland	MPRIIQLAPDGGARYIAVDRDGNVWRGETKRQKTGDEEYIQWKPLPSEFPKDG
Ga0187780_104367111	3300017973	Tropical Peatland	MPRIIQLAPDGGARYIAVDRDGNVWRGETKRQKTGDEEYIQWTPLRSEFPQGG
Ga0187777_107632392	3300017974	Tropical Peatland	MPRIIQLAPDGGARYIAVDRDGNLWRGETKRQKTGDEEYIQWKPLPSEFPKDG
Ga0187822_102619302	3300017994	Freshwater Sediment	MPRIIQLAPDGGGRYIAVDRDGDLWRGEMKRQKDGGEEYIQWKPLPSQFPRDT
Ga0184610_13173492	3300017997	Groundwater Sediment	MPRIIQLAPDGGGRYIAVDRDRDLWRGETKRQKDGGEECIQWMPLPSKFPRDV
Ga0184605_104201962	3300018027	Groundwater Sediment	MPRIIQLTPDGGGRYIAVDRDGDLWRGETKRQTSGGEEHIEWKPLPAQFPRDN
Ga0190272_108942762	3300018429	Soil	MPRIIHLAPDGGGRYIAVDRDGDLWRGETKCQKEGGQEYIEWTPLPAQFPRDN
Ga0193700_10468302	3300019873	Soil	MPRLLQVAPDGGGRYIAVDRDGQIWRGETKRRKPDGTEVIAWTPMPSEFPSGA
Ga0193723_11180661	3300019879	Soil	APGTPRHPSPWPWSKGKENVMPRIIQPTPDGGGRYIAVDRDEDLWWGETKRQTSGGQEYIEWKPLPAQFPRDN
Ga0193725_10985391	3300019883	Soil	GRKAPGTPRHPSPWPWSKGKENVMPRIIQPTPDGGGRYIAVDRDEDLWWGETKRQTSGGQEYIEWKPLPAQFPRDN
Ga0193747_11430382	3300019885	Soil	MPRLLQVAPDGGGRYIAVDRDGQIWRGEAKRSKPDGIEVIAWTPMPSEFPSGA
Ga0193751_11142022	3300019888	Soil	MSRIIQLAPDGGGRYLAVDRDGDLWRGEPMRQKDGGQECIQWKPLLSQFPKDNR
Ga0193755_100382912	3300020004	Soil	MPRIIQPTPDGGGRYIAVDRDEDLWWGETKRQTSGGQEYIEWKPLPAQFPRDN
Ga0210407_100264056	3300020579	Soil	MPRIIQLAPDGGGRYIAVDRDGDLWRGETMRQKDGGQEYIQWKPLPSQFPREN
Ga0210404_102979712	3300021088	Soil	MPRIIQLAPDGGGRYIAVDRDGDLWRGETMRQKDGAQEYIQWKPLPSQFPRENQ
Ga0210397_103733003	3300021403	Soil	MPRIIQLAPDGGGRYIGVDRDGDLWRGETKRQKDGGQEYIQWKPLPSQFPREN
Ga0210402_105129383	3300021478	Soil	MPRIIQLAPDGGGRYIAVDRDGDLWRGETMRQKDGGQEYIQWKPLPSQFPRENQ
Ga0210409_102495051	3300021559	Soil	LDAAPSTPGSTPCRKEKEKAMPRIIQLAPDGGGRYIAVDRDGDLWRGETMRQKDGGQEYIQWKPLPSQFPREN
Ga0242660_11273401	3300022531	Soil	APRITQLAPVGSGRYIAVDRDGELWRGETKRQKEGGEEYIQWKPLPSQFPREN
Ga0207653_100781462	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	QVAPDGGGRYIAVDRDGQIWRGEAKRSKLDGTEVIAWKPMPSEFPSGA
Ga0207653_102713682	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQVAPDGGGRYIAVDRDGDFWRGETKRQKEGGEEYIQWKPLPAQFPRDNN
Ga0207684_100024475	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPRLLQVAPDGGGRYIAVDRDGQIWRGEAKRSKLDGTEVIAWKPMPSEFPSGA
Ga0207684_100776016	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQLAPDGGGRYIAVDRDGDLWRGETKRQKDGGEEYIQWKPLPSQFPRDS
Ga0207684_101663787	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	GKESAMPRIIQLAPDGGGRYIAVDRDGDLWRGETKRQKDGGPEYIQWKPLPSQFPRDN
Ga0207684_102465581	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	IQLSPDGGGRYIAVDHEAQVWRGETKRPTSGGEEYIVWKPRHSEFAQDN
Ga0207684_104877442	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQLTPDGGGRYIAVDGDAQVWRGETQRPKSGGDEYITWRPLHSEFPRSN
Ga0207684_108100482	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQLAPDGGGRYIAVDRDGQVWRGETQRPKSGGDEYITWKPLHSEFPRSN
Ga0207684_109771563	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPRLLQVAPDGGGRYIAVDRDGQIWRGEAKRSKPDGTEVIAWKPMPSEFPSGA
Ga0207646_100432596	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQLSPDGGGRYIAVDRDGQVWRGETKRGKTDGEEYIAWKPLQSEFPKDA
Ga0207646_101414863	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQLAPDGGGRYIAVDRDGDLWRGETKRQTSGGEEYIEWKPLPAQFPRDN
Ga0207646_102790732	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MPRIIQLSPDGGGRYIAVDHEAQVWRGETKRPTSGGEEYIVWKPRHSEFAQDN
Ga0208286_10210452	3300026015	Rice Paddy Soil	MPRLLQVAPDGGGRYIAVDRDGQIWRGDTTRAKGGGEEYIVWKPLRSEFPRDS
Ga0257148_10236471	3300026345	Soil	DGGGRYIAVDWDGELWRGETMRQKDGGQEYIRWKPQPSQFPSDN
Ga0257149_10285693	3300026355	Soil	MPRLLQVAPDGGGRYIAVDRDGQIWRGEAKRSKPDGTEVIAWTPMPSEFPSGA
Ga0257163_10164932	3300026359	Soil	MPRLLQVAPDGGGRYIAVDRDGQIWRGEAKRKKPDGTEVIAWTPMPSEFPSGA
Ga0257147_10698732	3300026475	Soil	MPRLLQVAPDGGGRYIAVDRDGQIWRGEAKRSKPDGTEFIAWAPMRSEFPSGA
Ga0257168_10255454	3300026514	Soil	TTWDKGKENVMPRIIQLAPDGGGRYIAVDRDGDLWRGETKRQTSGGEEYIEWKPLPAQFPRDN
Ga0209648_104515822	3300026551	Grasslands Soil	MPRIIQLSPDGGGRYIAVDHEAQVWRGETKRPTSGGEEYIVWKPRHSEFPRDN
Ga0209217_12143482	3300027651	Forest Soil	MPRLLQVTPDGGGRYIAVDRDGQIWRGEAKRSKPDGTEVIAWTPMPSEFPSGA
Ga0209217_12150762	3300027651	Forest Soil	MPRIIQLAPDGGGRYIAVDRDGDLWRGETMRQKDGGQEYIQWKPLPSQFPTEN
Ga0209388_10495141	3300027655	Vadose Zone Soil	FLAGIPDTAKEHTMPRIIQLAPDGGGRYIAVDWDGELWRGETMRQKDGGQEYIRWKPQPSQFPSDN
Ga0209388_10913323	3300027655	Vadose Zone Soil	PRLLQVAPDGGGRYIAVDRDGQIWRGEAKRSKPDGTEFIAWTPMRSEFPSGA
Ga0209588_12278491	3300027671	Vadose Zone Soil	KGKESTMPRIIQLAPDGGGRYIAVDRDGDLWRGETKRQKDGNQEYIQWKPLPSQFPRDN
Ga0209180_107332492	3300027846	Vadose Zone Soil	MPRIIQLAPDGGGRYIGVDRDGDLWRGETMRQKDGGQEYIQWKPLPSQFPREN
Ga0209590_101655842	3300027882	Vadose Zone Soil	MPRIIQLSPDGGGRYIAVDRDGQVWRGETKRGKTDGEEYIAWKPLQSEFPKNT
Ga0209380_107750741	3300027889	Soil	MARIIQVAPDGSGRYIAVDRDGELWRGETKRQKEGAEEYIQWKPLPSQFPRHNN
Ga0209068_101689591	3300027894	Watersheds	MPRLLQVVPDGGGRYIAVDRDGQIWRGEAKRSKPEGPEVIAWTPLRSEFPSGA
Ga0209526_100075756	3300028047	Forest Soil	MPRIIQLAPDGGGRHIVVDRSGDLWRGETMRQKGGQESIRCNPLPSQFPRDN
Ga0307504_100728522	3300028792	Soil	MPRIIQLAPDGGGRYIAVDRDGELWRGETMRQKDGGQEYIQWKPLPSQFPRDNQ
Ga0307504_103539962	3300028792	Soil	MPRIIQLSPDGGGRYIAVDREGQVWRGETKQPKGGGEEYIVWKLLHSE
Ga0307302_107046192	3300028814	Soil	RKAPGTPRHPSPWPWSKGKENVTPRIIQLTPDGGGRYIAVDRDGDLWRGETKRQTSGGEEYIEWKPLPAQFPRDN
Ga0308309_118922142	3300028906	Soil	SGFLAARPAKRKESMMARIIQVAPDGSGRYIAVDRDGELWRGETKRQKEGAEEYIQWKPLPSQFPRHNN
Ga0222749_101266123	3300029636	Soil	VGIPTTRKGYTMPRIIQLAPDGGGRYIAVDRDGDLWRGETVRQKDGGQEYIQWKPLPSQFPKEN
Ga0299907_103561642	3300030006	Soil	MPRIIQLAPDGGGRYIAVDRDGDLWRGETKRQPSGSEEYIEWKPLPARFPRDN
Ga0308194_101881273	3300031421	Soil	IIQLAPDGGGRYIAVDRDGDLWRGETMRQKDGGQEYIQWKPLPSQFPRDHQ
Ga0310813_102959484	3300031716	Soil	MPRIIQLTPDGGGRYIAVDRDGDLWRGETKRQKDGGEEYIQWKPLPSQFPRDN
Ga0310813_105984262	3300031716	Soil	MPRIIQLTPDGGGRYIAVDRDGDLWRGETTRQKDGGEEYIQWKPLPSQFPRDNG
Ga0307471_1013594822	3300032180	Hardwood Forest Soil	MPRIIQVAPDGSGRYVAVDRDGELWRGETKRQKEGGEEYIQWKPLPSQFPRDN
Ga0326726_100551736	3300033433	Peat Soil	MPRIIHLSPDGSGRYIAVDRDGDLWRGETKHQKDGGEEYIAWTPLPSQFPRDN
Ga0326726_100742248	3300033433	Peat Soil	MPRIIQLAPDGGGRYIAVDRDGDLWRGETKRQKDGGEEYIQWTPLPAQFPRDN
Ga0326726_110555282	3300033433	Peat Soil	MPRIIQLTPDGGGRYIAVDRDGDLWRGETKRQKDGGEEYIQWTPLPAQFPRDN
Ga0326726_122128541	3300033433	Peat Soil	KGNIMPRIIQLAPDGGGRYIAVDRDGDLWRGETKHQKDGGEEYIAWTPLPAQFPRDN
Ga0310811_107488203	3300033475	Soil	MPRIIQLTPDGGGRYIAVDRDGDLWRGETKRQKDGGEEYIQWKPLPSQFPRDNG
Ga0316620_121085353	3300033480	Soil	LTPDGGGRYIAVDRDGDLWRVETKRQKDGGEEYIQWKPLPSQFPRDN
Ga0316624_103463052	3300033486	Soil	MPRIIQLAPDGGGRYIAVDRDGDLWRGETKHQKDGGEEYIAWTPLPAQFPRDN
Ga0326723_0004217_2758_2919	3300034090	Peat Soil	MPRIIQLAPDGGGRYIAVDRDGDLWRGETKHQKDGGEECIAWTPLPAQFPRDN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078369

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences