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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F078366 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 116 |
| Average Sequence Length | 46 residues |
| Representative Sequence | IPDGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Number of Associated Samples | 103 |
| Number of Associated Scaffolds | 116 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 1.72 % |
| % of genes near scaffold ends (potentially truncated) | 98.28 % |
| % of genes from short scaffolds (< 2000 bps) | 81.03 % |
| Associated GOLD sequencing projects | 92 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.26 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (68.103 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (20.690 % of family members) |
| Environment Ontology (ENVO) | Unclassified (37.069 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (45.690 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 16.44% β-sheet: 0.00% Coil/Unstructured: 83.56% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.26 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 116 Family Scaffolds |
|---|---|---|
| PF04226 | Transgly_assoc | 12.93 |
| PF00383 | dCMP_cyt_deam_1 | 8.62 |
| PF13365 | Trypsin_2 | 4.31 |
| PF01370 | Epimerase | 1.72 |
| PF03796 | DnaB_C | 0.86 |
| PF00535 | Glycos_transf_2 | 0.86 |
| PF00041 | fn3 | 0.86 |
| PF00268 | Ribonuc_red_sm | 0.86 |
| PF03567 | Sulfotransfer_2 | 0.86 |
| COG ID | Name | Functional Category | % Frequency in 116 Family Scaffolds |
|---|---|---|---|
| COG2261 | Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family | General function prediction only [R] | 12.93 |
| COG0208 | Ribonucleotide reductase beta subunit, ferritin-like domain | Nucleotide transport and metabolism [F] | 0.86 |
| COG0305 | Replicative DNA helicase | Replication, recombination and repair [L] | 0.86 |
| COG1066 | DNA repair protein RadA/Sms, contains AAA+ ATPase domain | Replication, recombination and repair [L] | 0.86 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 68.10 % |
| All Organisms | root | All Organisms | 31.90 % |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 20.69% |
| Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 15.52% |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 12.07% |
| Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 6.90% |
| Freshwater | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater | 4.31% |
| Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 4.31% |
| Freshwater | Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater | 3.45% |
| Freshwater Lake | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake | 3.45% |
| Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 3.45% |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 3.45% |
| Freshwater, Plankton | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton | 1.72% |
| Freshwater | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater | 1.72% |
| Freshwater | Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater | 1.72% |
| Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 1.72% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 1.72% |
| Pond Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water | 1.72% |
| Meromictic Pond | Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond | 1.72% |
| Freshwater Lentic | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic | 0.86% |
| Anoxic Zone Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater | 0.86% |
| Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 0.86% |
| Freshwater, Surface Ice | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice | 0.86% |
| Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 0.86% |
| Benthic | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic | 0.86% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 0.86% |
| Surface Seawater | Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater | 0.86% |
| Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 0.86% |
| Pelagic Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine | 0.86% |
| Deep Subsurface | Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface | 0.86% |
| Hypersaline Lake Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment | 0.86% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001533 | Benthic freshwater microbial communities from British Columbia, Canada | Environmental | Open in IMG/M |
| 3300002294 | Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion | Environmental | Open in IMG/M |
| 3300002408 | Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123) | Environmental | Open in IMG/M |
| 3300005528 | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG | Environmental | Open in IMG/M |
| 3300006810 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 | Environmental | Open in IMG/M |
| 3300006874 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA | Environmental | Open in IMG/M |
| 3300006916 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 | Environmental | Open in IMG/M |
| 3300007094 | Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A) | Environmental | Open in IMG/M |
| 3300007200 | Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site B) 9 sequencing projects | Environmental | Open in IMG/M |
| 3300007216 | Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface and Bottom layer) 16 sequencing projects | Environmental | Open in IMG/M |
| 3300007304 | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaT (Metagenome Metatranscriptome) (version 2) | Environmental | Open in IMG/M |
| 3300007344 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 | Environmental | Open in IMG/M |
| 3300007346 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 | Environmental | Open in IMG/M |
| 3300007521 | Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01 | Environmental | Open in IMG/M |
| 3300007539 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG | Environmental | Open in IMG/M |
| 3300007541 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG | Environmental | Open in IMG/M |
| 3300008262 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA | Environmental | Open in IMG/M |
| 3300009027 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG | Environmental | Open in IMG/M |
| 3300009161 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG | Environmental | Open in IMG/M |
| 3300009164 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG | Environmental | Open in IMG/M |
| 3300009181 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG | Environmental | Open in IMG/M |
| 3300009184 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG | Environmental | Open in IMG/M |
| 3300009450 | Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; DNA IDBA-UD | Environmental | Open in IMG/M |
| 3300009466 | Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 2m depth; DNA IDBA-UD | Environmental | Open in IMG/M |
| 3300009703 | Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG | Environmental | Open in IMG/M |
| 3300010160 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG | Environmental | Open in IMG/M |
| 3300010318 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNA | Environmental | Open in IMG/M |
| 3300010354 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA | Environmental | Open in IMG/M |
| 3300012518 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_RNA1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300012666 | Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2 | Environmental | Open in IMG/M |
| 3300012954 | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG | Environmental | Open in IMG/M |
| 3300013004 | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG | Environmental | Open in IMG/M |
| 3300013131 (restricted) | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m | Environmental | Open in IMG/M |
| 3300013132 (restricted) | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5m | Environmental | Open in IMG/M |
| 3300013133 (restricted) | Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2 | Environmental | Open in IMG/M |
| 3300014050 | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B | Environmental | Open in IMG/M |
| 3300014720 (restricted) | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35m | Environmental | Open in IMG/M |
| 3300017730 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13 | Environmental | Open in IMG/M |
| 3300017742 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21 | Environmental | Open in IMG/M |
| 3300017749 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 | Environmental | Open in IMG/M |
| 3300017763 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20 | Environmental | Open in IMG/M |
| 3300017788 | Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L | Environmental | Open in IMG/M |
| 3300017818 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017949 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017952 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017956 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017962 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017968 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017969 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017985 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017986 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017989 | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaG | Environmental | Open in IMG/M |
| 3300018418 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018421 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018424 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018426 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300020056 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101410AT metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300020439 | Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029) | Environmental | Open in IMG/M |
| 3300020470 | Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053) | Environmental | Open in IMG/M |
| 3300020535 | Freshwater microbial communities from Lake Mendota, WI - 25JUL2011 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
| 3300020547 | Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
| 3300020553 | Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
| 3300020555 | Freshwater microbial communities from Lake Mendota, WI - 10AUG2009 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
| 3300020566 | Freshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
| 3300021340 | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-9m | Environmental | Open in IMG/M |
| 3300021379 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247 | Environmental | Open in IMG/M |
| 3300022939 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG | Environmental | Open in IMG/M |
| 3300023081 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG | Environmental | Open in IMG/M |
| 3300023105 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG | Environmental | Open in IMG/M |
| 3300023170 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG | Environmental | Open in IMG/M |
| 3300023175 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG | Environmental | Open in IMG/M |
| 3300024230 | Seawater microbial communities from Monterey Bay, California, United States - 48D | Environmental | Open in IMG/M |
| 3300024231 | Seawater microbial communities from Monterey Bay, California, United States - 43D | Environmental | Open in IMG/M |
| 3300024242 | Seawater microbial communities from Monterey Bay, California, United States - 91D | Environmental | Open in IMG/M |
| 3300024296 | Seawater microbial communities from Monterey Bay, California, United States - 36D | Environmental | Open in IMG/M |
| 3300025646 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025687 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025771 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025853 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes) | Environmental | Open in IMG/M |
| 3300025890 | Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes) | Environmental | Open in IMG/M |
| 3300026138 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG (SPAdes) | Environmental | Open in IMG/M |
| 3300027586 | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes) | Environmental | Open in IMG/M |
| 3300027741 | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027770 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027793 | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027798 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes) | Environmental | Open in IMG/M |
| 3300027850 | Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01 (SPAdes) | Environmental | Open in IMG/M |
| 3300027970 (restricted) | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14.5m | Environmental | Open in IMG/M |
| 3300028044 (restricted) | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_15m | Environmental | Open in IMG/M |
| 3300028197 | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m | Environmental | Open in IMG/M |
| 3300029268 (restricted) | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_19m | Environmental | Open in IMG/M |
| 3300031758 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 | Environmental | Open in IMG/M |
| 3300032073 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416 | Environmental | Open in IMG/M |
| 3300032116 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119 | Environmental | Open in IMG/M |
| 3300033981 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011 | Environmental | Open in IMG/M |
| 3300033996 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004 | Environmental | Open in IMG/M |
| 3300034093 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072 | Environmental | Open in IMG/M |
| 3300034101 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 | Environmental | Open in IMG/M |
| 3300034112 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191 | Environmental | Open in IMG/M |
| 3300034119 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166 | Environmental | Open in IMG/M |
| 3300034166 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079 | Environmental | Open in IMG/M |
| 3300034280 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048 | Environmental | Open in IMG/M |
| 3300034418 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4) | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| MLSed_101055132 | 3300001533 | Benthic | DGGHPSWGPIPDGSFLITAEVAANMLAQNGSYAFSEFDGFPVQKLPDYGFDYL* |
| B570J29584_10086092 | 3300002294 | Freshwater | SFLIKADVAAGMLKGNAAYAFSDFDGFPLQKLPDYGFDYLKS* |
| B570J29032_1092309921 | 3300002408 | Freshwater | GGHPEWGPIPDGSFLIHADVAAGMLSQNGSYAFSGFDGFPLQKLPDYGFDYLA* |
| Ga0068872_101212775 | 3300005528 | Freshwater Lake | PDGSFLIRSSVAGEMLAQNGSYAFSNFDGFPLQKLPDYGFDYL* |
| Ga0070754_100821226 | 3300006810 | Aqueous | AAAGMLKQNGSYAFSQFDGFPVQKLPSYGFEDYL* |
| Ga0075475_102354361 | 3300006874 | Aqueous | AWGPIPDGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFEDYL* |
| Ga0070750_101585241 | 3300006916 | Aqueous | ADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL* |
| Ga0102532_11664612 | 3300007094 | Freshwater Lake | QNSWGKWNDGGHPEWGPIPDGSFLIRAEAAAGMLAQNGSYAFSNFDGFPVQKLPSYDFDIYL* |
| Ga0103273_11863022 | 3300007200 | Freshwater Lake | LIRAEAAAGMLAQNGSYAFSNFDGFPVQKLPSYDFDIYL* |
| Ga0103961_12542711 | 3300007216 | Freshwater Lake | GGHPEWGPIPDGSFLIHADAAEGMLKQNGAYAFSQFDGFPVQKLPDYGFEDYL* |
| Ga0103961_13329191 | 3300007216 | Freshwater Lake | DAAAGMLAQNGSYAFSNFDGFPVQKLPSYGFESYL* |
| Ga0102689_15615503 | 3300007304 | Freshwater Lake | DGGHPEWGQLPNGSFLIHSDIAERMIKQNGAFAISNFDGFPLQKLPDYGFDYL* |
| Ga0070745_10259541 | 3300007344 | Aqueous | DGGHPEWGPIPDGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL* |
| Ga0070753_10575121 | 3300007346 | Aqueous | EWGKIPDGSFLIHADAAAGMLKQNGSYAFSQFDGFPVQKLPSYGFEDYL* |
| Ga0105044_101963376 | 3300007521 | Freshwater | HPDWGKIPNGSFLIREADAAGMIRQNASYALSAFDGFPLQDLPDYGFGDYLS* |
| Ga0099849_11082311 | 3300007539 | Aqueous | EWGKIPDGSFLIHADVAAGMLKQNGSYAFSEFDGFPVQKLPNYGFEEYL* |
| Ga0099849_12433991 | 3300007539 | Aqueous | KWNDGGHPQWGKIPDGSFLIHADVAEGMLKQNGAYAFSQFDGFPVQKLPSYGFEDYL* |
| Ga0099848_12928541 | 3300007541 | Aqueous | IPDGSFLIHADVAEGMLKQNGSYAFSDFDGFPPQKLPDYGFVDYL* |
| Ga0114337_10737207 | 3300008262 | Freshwater, Plankton | VQNSWGKWNDGGHPEWGPIPDGSFLIRADVAAGMLSQNGSYAFSNFDGFPVQKLPSYGFEDYL* |
| Ga0114337_12240851 | 3300008262 | Freshwater, Plankton | EVAAGMLAANGSYAFSNFDGFPVQKLPSYGFEDYL* |
| Ga0102957_10038509 | 3300009027 | Pond Water | DGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL* |
| Ga0114966_100665318 | 3300009161 | Freshwater Lake | WNSGGHPAWGPIPDGSFLIDSDTAAGMLNQNGAYAFSNFDGFPVQKLPSYGFEEYI* |
| Ga0114966_107708392 | 3300009161 | Freshwater Lake | SWGKWNDGGHPAWGPIPDGSFLIHADVAAGMLAMNGSYTFSGFDGFPLQKLPSYGFEDYL |
| Ga0114975_103841311 | 3300009164 | Freshwater Lake | EWGPIPDGSFLIHADVAAGMLAMNGSYAFSGFDGFPLQKLPSYGFEDYL* |
| Ga0114969_101328921 | 3300009181 | Freshwater Lake | SGGHPAWGPIPDGSFLIDSDTAAGMLNQNGAYAFSNFDGFPVQKLPSYGFEEYI* |
| Ga0114976_107103173 | 3300009184 | Freshwater Lake | PDGSFLIHADVAAGMLAMNGSYTFSSFDGFPLQKLPSYGFEDYL* |
| Ga0127391_10156126 | 3300009450 | Meromictic Pond | VAAGMLKQNGAYAFSQFDGFPVQKLPSYGFKDYL* |
| Ga0126448_10273261 | 3300009466 | Meromictic Pond | IHADVAAGMLKQNGAYAFSQFDGFPVQKLPSYGFKDYL* |
| Ga0114933_102871941 | 3300009703 | Deep Subsurface | HADIAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL* |
| Ga0114967_106293911 | 3300010160 | Freshwater Lake | PIPDGSFLIDSDTAAGMLNQNGAYAFSNFDGFPVQKLPSYGFEEYI* |
| Ga0136656_11451671 | 3300010318 | Freshwater To Marine Saline Gradient | DGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFEDYL* |
| Ga0129333_108554044 | 3300010354 | Freshwater To Marine Saline Gradient | SFLIRAEVAAGMLAANGSYAFSNFDGFPVQKLPSYGFEDYL* |
| Ga0129349_10572743 | 3300012518 | Aqueous | EKDAAGMLSGKGAYAFSNVNGFPPQKLTDLGFVDYL* |
| Ga0157498_10631663 | 3300012666 | Freshwater, Surface Ice | SWGKWNDGGHPEWGPIPDGSFLINAETAEGMLSQSGAYAFSQFDGFPVQKLPSYGFEDYL |
| Ga0163111_1000008358 | 3300012954 | Surface Seawater | GHPDWGPIPDGSFLIHADVAAGMLRQNGAYAFSDFNGFPPQKLPDYGFESYL* |
| Ga0164293_100426737 | 3300013004 | Freshwater | ADVAAGMLSANGSYAFSGFDGFPLQKLPSYGFEDYL* |
| (restricted) Ga0172373_106438731 | 3300013131 | Freshwater | VAAGMLRGGGAFAISNFDGFPLQKLPDYGFDYLES* |
| (restricted) Ga0172372_100146361 | 3300013132 | Freshwater | SFLIKADVAAGMLRGGGAFAISNFDGFPLQKLPDYGFDYLES* |
| (restricted) Ga0172362_101361871 | 3300013133 | Sediment | DGSFLITADVAQGMLNGNGAYAFSDFDGFPPQKLPNYGFDYLR* |
| Ga0119952_10124447 | 3300014050 | Freshwater | RAEVAAGMLAQSGSYAFSQFDGFPVQKLPSYGFEEYL* |
| (restricted) Ga0172376_103332791 | 3300014720 | Freshwater | PIPDGSFLIKADVAAGMLRGGGAFAISNFDGFPLQKLPDYGFDYLER* |
| (restricted) Ga0172376_104801351 | 3300014720 | Freshwater | EWGKIPDGSFLIRAEVAAGMLAANASYVFSEFDGFPLQKLPDYGFDYL* |
| Ga0181417_11662152 | 3300017730 | Seawater | DVAAGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0181399_10103251 | 3300017742 | Seawater | DPEWGPIPDGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0181392_11721932 | 3300017749 | Seawater | LVQNSWGKFNSGGHPEWGPIPDGSFLIHADVAAGMLRGNGAYAFSSFNGFPPQELPDYGFDSYL |
| Ga0181410_10566711 | 3300017763 | Seawater | IPDGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFGDYLXDY |
| Ga0169931_109514051 | 3300017788 | Freshwater | DGSFLIKADVAAGMLRGGGAFAISNFDGFPLQKLPNYGFDYLESN |
| Ga0181565_102505071 | 3300017818 | Salt Marsh | PIPDGSFLIHADIAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0181565_108241213 | 3300017818 | Salt Marsh | PDGSFLIHADVAEVMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0181584_107514431 | 3300017949 | Salt Marsh | GGHPEWGPIPDGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0181584_109239271 | 3300017949 | Salt Marsh | IPDGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0181583_101893351 | 3300017952 | Salt Marsh | HADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0181580_100464187 | 3300017956 | Salt Marsh | DGGHPEWGPIPDGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0181581_101954941 | 3300017962 | Salt Marsh | GHPEWGPIPDGSFLIHADVAEGMLRQIGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0181587_103048342 | 3300017968 | Salt Marsh | LIRASDAAGMLKQNGAYAFSEFNGFPPQKLPDYGFEDYL |
| Ga0181585_100084117 | 3300017969 | Salt Marsh | GGHPEWGPIPDGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFGDYL |
| Ga0181576_104215462 | 3300017985 | Salt Marsh | WGPIPDGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0181576_105531313 | 3300017985 | Salt Marsh | HPEWGPIPDGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFGEYLXSS |
| Ga0181569_100969187 | 3300017986 | Salt Marsh | DVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0180432_109790243 | 3300017989 | Hypersaline Lake Sediment | KIPDGSFLIHADAAAGMLKQNGSYAFSQFDGFPVQKLPSYGFEDYL |
| Ga0181567_103463771 | 3300018418 | Salt Marsh | IPDGSFLIHADIAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0181592_100638021 | 3300018421 | Salt Marsh | GPIPDGSFLIHADIAEGMLRQNGAYAFSDFNGFPPQKLPDYGFDTYL |
| Ga0181591_103140651 | 3300018424 | Salt Marsh | KWNDGGHPEWGPIPDGSFLIHADIAEGMLRQNGAYAFSDFNGFPPQKLPDYGFDTYL |
| Ga0181566_100546741 | 3300018426 | Salt Marsh | HADIAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0181574_101995564 | 3300020056 | Salt Marsh | LIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFGEYL |
| Ga0211558_103954861 | 3300020439 | Marine | EWGPIPDGSFLIHADIAAGMLRGNGAYAYSNVDGFPPQKLPNYGFESYL |
| Ga0211543_103136312 | 3300020470 | Marine | LIHADIAAGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0208228_10570562 | 3300020535 | Freshwater | EWGPIPEGSFLIHADVAAGMLSANGSYAFSGFDGFPLQKLPSYGFEDYL |
| Ga0208361_10026689 | 3300020547 | Freshwater | IKADVAAGMLKGNAAYAFSDFDGFPLQKLPDYGFDYLKS |
| Ga0208855_10145211 | 3300020553 | Freshwater | IRAEVAAGMLAQNGSYACSNFDGFPLQKLPDYGFDYL |
| Ga0208358_10520783 | 3300020555 | Freshwater | IHSDVAQGMLSQNGSYAFSGFDGFPLQKLPSYGFDDYL |
| Ga0208358_10683902 | 3300020555 | Freshwater | WNDGGHPEWGPIPEGSFLIHADVAAGMLSANGSYAFSGFDGFPLQKLPSYGFDDYL |
| Ga0208222_10113121 | 3300020566 | Freshwater | PDGSFLIHSDVAEGMIKQNGTYAFSNFNGFPVQKLPDYGFDYL |
| Ga0208222_10780371 | 3300020566 | Freshwater | ADVAAGMLSQNGSYAFSNFDGFPVQKLPSYGFEDYL |
| Ga0194041_102377703 | 3300021340 | Anoxic Zone Freshwater | FLIRADDAAGMLAMNGSYAFSGFDGFPLQKLPSYGFEDYL |
| Ga0213864_105939532 | 3300021379 | Seawater | PEWGPIPDGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0255754_103631334 | 3300022939 | Salt Marsh | FLIHADIAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0255764_104778963 | 3300023081 | Salt Marsh | SFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0255782_101232171 | 3300023105 | Salt Marsh | DGSFLIHADIAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0255761_102091263 | 3300023170 | Salt Marsh | IHADIAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0255761_104358871 | 3300023170 | Salt Marsh | PEWGPIPDGSFLIHADIAEGMLRQNGAYAFSDFNGFPPQKLPDYGFIDYL |
| Ga0255761_104637811 | 3300023170 | Salt Marsh | DIAAGMLRQKGAYAFSDFNGFPPQKLPNYGFGEYL |
| Ga0255777_103498594 | 3300023175 | Salt Marsh | SFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFGEYL |
| Ga0228638_10822292 | 3300024230 | Seawater | GHPEWGPIPDGSFLIHADVAAGMLRGNGAYAFSSFNGFPPQELPDYGFDSYL |
| Ga0233399_10798261 | 3300024231 | Seawater | GSFLIHADVAAAMLRQNGAYAFSDFNGFPPQKLPDYGFDSYL |
| Ga0228673_10527591 | 3300024242 | Seawater | DWGNIPDGSFLIHADVAAAMLRQNGAYAFSDFNGFPPQKLPDYGFDSYL |
| Ga0228629_11748661 | 3300024296 | Seawater | DGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYLXNY |
| Ga0208161_11585703 | 3300025646 | Aqueous | GSFLITADVAQGMLDGNGAYSFSDFDGFPLQKLPDYGFDYLER |
| Ga0208019_10120528 | 3300025687 | Aqueous | WGKWNDGGHPEWGKIPDGSFLIHADAAAGMLKQNGSYAFSQFDGFPVQKLPSYGFEDYL |
| Ga0208427_10988792 | 3300025771 | Aqueous | GHPEWGPIPDGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0208645_10241697 | 3300025853 | Aqueous | DGSFLIHADAAAGMLKQNGSYAFSQFDGFPVQKLPSYGFEDYL |
| Ga0209631_104110771 | 3300025890 | Pelagic Marine | PDGSFLIHADVAEGMLRQNGAYAFSNFDGFPPQKLPDYGFGEYL |
| Ga0209951_10043011 | 3300026138 | Pond Water | DGSFLIHADVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0208966_10649444 | 3300027586 | Freshwater Lentic | VQNSWGKWNGGGHPAWGPIPEGSFLIHADVAQGMLNQNGSYAFSGFDGFPVQKLPSYGFEEYL |
| Ga0209085_10696475 | 3300027741 | Freshwater Lake | QNSWGKWNDGGRPEWGPIPDGSFLIHADVAAGMLAMNGSYTFSGFDGFPLQKLPSYGFEDYL |
| Ga0209086_100726736 | 3300027770 | Freshwater Lake | HPAWGPIPDGSFLIDSDTAAGMLNQNGAYAFSNFDGFPVQKLPSYGFEEYI |
| Ga0209972_100906275 | 3300027793 | Freshwater Lake | PIPDGSFLIRSSVAGEMLAQNGSYAFSNFDGFPLQKLPDYGFDYL |
| Ga0209353_100701775 | 3300027798 | Freshwater Lake | PEGSFLIHADVAQGMLNQNGSYAFSGFDGFPVQKLPSYGFEEYL |
| Ga0209591_104098264 | 3300027850 | Freshwater | READAAGMIRQNASYALSAFDGFPLQDLPDYGFGDYLS |
| (restricted) Ga0247837_10582327 | 3300027970 | Freshwater | ADVAEGMLKQNGSYAFSNFDGFPVQKLPSYGFEDYL |
| (restricted) Ga0247838_12290023 | 3300028044 | Freshwater | TIPDGSFLIHADVAEGMLKQNGSYAFSNFDGFPVQKLPSYGFEDYL |
| Ga0257110_11714921 | 3300028197 | Marine | SGGHPEWGPIPDGSFLIHADVAAGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| (restricted) Ga0247842_105443643 | 3300029268 | Freshwater | GGHPEWGTIPDGSFLIHADVAEGMLKQNGSYAFSNFDGFPVQKLPSYGFEDYL |
| Ga0315907_106025961 | 3300031758 | Freshwater | LIHSDVAEGMIKQNGTYAFSNFNGFPVQKLPDYGFDYL |
| Ga0315315_111418211 | 3300032073 | Seawater | HPEWGPIPDGSFLIHANVAEGMLRQNGAYAFSDFNGFPPQKLPDYGFVDYL |
| Ga0315903_105557471 | 3300032116 | Freshwater | PEWGQIPDGSFLIRGSVAGEMLAQNGSYAFSNFDGFPVQKLPDYGFGDYL |
| Ga0334982_0096294_1_168 | 3300033981 | Freshwater | WNDGGHPEWGPIPDGSFLIHSDVAEGMIKQNGTYAFSNFNGFPVQKLPDYGFDYL |
| Ga0334979_0489597_1_141 | 3300033996 | Freshwater | PIPEGSFLIHADVAAGMLSANGSYAFSGFDGFPLQKLPSYGFDDYL |
| Ga0335012_0190626_3_122 | 3300034093 | Freshwater | LIHSDDAAGMLAQNGAYAFSNFDGFPVQKLLSYGFEDYL |
| Ga0335027_0715427_3_137 | 3300034101 | Freshwater | PDGSFLITADVAAGMLNGNAAYAFSNFDGFPVQKLPSYGFEDYL |
| Ga0335027_0732707_427_582 | 3300034101 | Freshwater | GHPSWGPIPDGSFLIHSDVAEGMIKQNGTYAFSNFNGFPVQKLPDYGFDYL |
| Ga0335066_0270138_843_974 | 3300034112 | Freshwater | GSFLIKADVAVGMLKGNAAYAFSDFDGFPLQKLPDYGFDYLKS |
| Ga0335054_0709378_33_224 | 3300034119 | Freshwater | VQNSWGKWNDGGHPEWGPIPDGSFLIHADAAAGMLSANGSYAFSGFDGFPLQKLPSYGFEDYL |
| Ga0335016_0605185_464_595 | 3300034166 | Freshwater | DGSFLIHAETAAGMLSQSGAYAFSNFDGFPVQKLPSYGFEDYL |
| Ga0334997_0271791_1_120 | 3300034280 | Freshwater | FLIHSDVAEGMIKQNGTYAFSNFNGFPVQKLPDYGFDYL |
| Ga0348337_028485_2_166 | 3300034418 | Aqueous | DGGHPEWGKIPDGSFLIHADAAAGMLKQNGSYAFSQFDGFPVQKLPSYGFEDYL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |