Metagenome / Metatranscriptome Family F078365

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078365
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	78 residues
Representative Sequence	MVRVFADIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEIDLAAANDYVARHGSFAELAREHYAATDDDPV
Number of Associated Samples	101
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.61 %
% of genes near scaffold ends (potentially truncated)	22.41 %
% of genes from short scaffolds (< 2000 bps)	81.90 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.276 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.414 % of family members)
Environment Ontology (ENVO)	Unclassified (37.931 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.379 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.26% β-sheet: 0.00% Coil/Unstructured: 40.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF01845	CcdB	26.72
PF05685	Uma2	8.62
PF02627	CMD	6.90
PF13360	PQQ_2	5.17
PF05016	ParE_toxin	3.45
PF00589	Phage_integrase	2.59
PF01569	PAP2	1.72
PF01061	ABC2_membrane	1.72
PF13560	HTH_31	1.72
PF01230	HIT	0.86
PF12698	ABC2_membrane_3	0.86
PF01425	Amidase	0.86
PF02810	SEC-C	0.86
PF12704	MacB_PCD	0.86
PF01613	Flavin_Reduct	0.86
PF01011	PQQ	0.86
PF13361	UvrD_C	0.86
PF00144	Beta-lactamase	0.86
PF00565	SNase	0.86
PF07715	Plug	0.86
PF13558	SbcC_Walker_B	0.86
PF13580	SIS_2	0.86
PF04365	BrnT_toxin	0.86
PF10543	ORF6N	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	8.62
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	6.90
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	6.90
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.86
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.86
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.86
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.86
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.86
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.28 %
Unclassified	root	N/A	1.72 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.28 %
Unclassified	root	N/A	1.72 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.28 %
Unclassified	root	N/A	1.72 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	68.10 %
Unclassified	root	N/A	1.72 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.86 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.86 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	44.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.59 %
Unclassified	root	N/A	1.72 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.86 %

Name	Rank	Taxonomy	Distribution
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	39.66 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	3.45 %
Unclassified	root	N/A	1.72 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.86 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	39.66 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	2.59 %
Unclassified	root	N/A	1.72 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.86 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	39.66 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2.59 %
Unclassified	root	N/A	1.72 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.86 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.86 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	39.66 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2.59 %
Unclassified	root	N/A	1.72 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.86 %
Nocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	0.86 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	39.66 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2.59 %
Unclassified	root	N/A	1.72 %
Nocardiopsis synnemataformans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis synnemataformans	0.86 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.86 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_103612303	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1603	Open in IMG/M
3300004047\|Ga0055499_10008737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1130	Open in IMG/M
3300004058\|Ga0055498_10110074	All Organisms → cellular organisms → Bacteria → Proteobacteria	567	Open in IMG/M
3300004463\|Ga0063356_102994389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	728	Open in IMG/M
3300004463\|Ga0063356_105393326	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300005162\|Ga0066814_10109260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis synnemataformans	526	Open in IMG/M
3300005332\|Ga0066388_103262696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	829	Open in IMG/M
3300005334\|Ga0068869_100223856	All Organisms → cellular organisms → Bacteria → Proteobacteria	1492	Open in IMG/M
3300005336\|Ga0070680_100072834	All Organisms → cellular organisms → Bacteria → Proteobacteria	2824	Open in IMG/M
3300005345\|Ga0070692_10054957	All Organisms → cellular organisms → Bacteria → Proteobacteria	2081	Open in IMG/M
3300005444\|Ga0070694_100071671	All Organisms → cellular organisms → Bacteria	2389	Open in IMG/M
3300005444\|Ga0070694_100363279	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300005458\|Ga0070681_10713096	All Organisms → cellular organisms → Bacteria → Proteobacteria	919	Open in IMG/M
3300005459\|Ga0068867_102166123	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300005544\|Ga0070686_100659852	All Organisms → cellular organisms → Bacteria → Proteobacteria	830	Open in IMG/M
3300005545\|Ga0070695_100367869	All Organisms → cellular organisms → Bacteria → Proteobacteria	1082	Open in IMG/M
3300005547\|Ga0070693_101074904	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300005564\|Ga0070664_101276459	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300005764\|Ga0066903_102971272	All Organisms → cellular organisms → Bacteria → Proteobacteria	919	Open in IMG/M
3300005836\|Ga0074470_10562241	All Organisms → cellular organisms → Bacteria → Proteobacteria	11692	Open in IMG/M
3300005841\|Ga0068863_102438118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	533	Open in IMG/M
3300005842\|Ga0068858_100844577	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300006844\|Ga0075428_100015403	All Organisms → cellular organisms → Bacteria → Proteobacteria	8477	Open in IMG/M
3300006844\|Ga0075428_102675826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	509	Open in IMG/M
3300006846\|Ga0075430_101576968	All Organisms → cellular organisms → Bacteria → Proteobacteria	539	Open in IMG/M
3300006852\|Ga0075433_10040526	All Organisms → cellular organisms → Bacteria → Proteobacteria	4032	Open in IMG/M
3300006853\|Ga0075420_100447389	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300006854\|Ga0075425_100117792	All Organisms → cellular organisms → Bacteria → Proteobacteria	3030	Open in IMG/M
3300006865\|Ga0073934_10001815	All Organisms → cellular organisms → Bacteria → Proteobacteria	48418	Open in IMG/M
3300006876\|Ga0079217_11238722	All Organisms → cellular organisms → Bacteria → Proteobacteria	571	Open in IMG/M
3300006894\|Ga0079215_10667612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	695	Open in IMG/M
3300009100\|Ga0075418_11899487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	648	Open in IMG/M
3300009147\|Ga0114129_12433580	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300009609\|Ga0105347_1026147	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2022	Open in IMG/M
3300009610\|Ga0105340_1556337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	512	Open in IMG/M
3300010400\|Ga0134122_10464391	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300010403\|Ga0134123_10645482	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300011395\|Ga0137315_1048955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	604	Open in IMG/M
3300011400\|Ga0137312_1086360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	549	Open in IMG/M
3300011412\|Ga0137424_1111296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	567	Open in IMG/M
3300011413\|Ga0137333_1138220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	560	Open in IMG/M
3300011427\|Ga0137448_1178702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	589	Open in IMG/M
3300011428\|Ga0137456_1077610	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300011432\|Ga0137428_1236492	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300011436\|Ga0137458_1265008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	524	Open in IMG/M
3300012040\|Ga0137461_1012922	All Organisms → cellular organisms → Bacteria	1998	Open in IMG/M
3300012113\|Ga0137328_1010958	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300012133\|Ga0137329_1044624	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300012228\|Ga0137459_1166799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	649	Open in IMG/M
3300012232\|Ga0137435_1225331	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300012891\|Ga0157305_10301105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	502	Open in IMG/M
3300012910\|Ga0157308_10474668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	503	Open in IMG/M
3300013096\|Ga0157307_1155958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	535	Open in IMG/M
3300014326\|Ga0157380_10554579	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1128	Open in IMG/M
3300014879\|Ga0180062_1084925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	710	Open in IMG/M
3300015248\|Ga0180079_1039428	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300015371\|Ga0132258_10917854	All Organisms → cellular organisms → Bacteria	2211	Open in IMG/M
3300015372\|Ga0132256_101336484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	829	Open in IMG/M
3300015373\|Ga0132257_101692771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	811	Open in IMG/M
3300018422\|Ga0190265_13737003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	507	Open in IMG/M
3300018432\|Ga0190275_11304288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	802	Open in IMG/M
3300018469\|Ga0190270_11409407	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300018476\|Ga0190274_10226216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1672	Open in IMG/M
3300018476\|Ga0190274_11565666	Not Available	751	Open in IMG/M
3300018481\|Ga0190271_10092460	All Organisms → cellular organisms → Bacteria → Proteobacteria	2757	Open in IMG/M
3300018481\|Ga0190271_10994430	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300019377\|Ga0190264_10054046	All Organisms → cellular organisms → Bacteria	1637	Open in IMG/M
3300019487\|Ga0187893_10114217	All Organisms → cellular organisms → Bacteria → Proteobacteria	2320	Open in IMG/M
3300019997\|Ga0193711_1012651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1062	Open in IMG/M
3300022915\|Ga0247790_10145218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	608	Open in IMG/M
3300025310\|Ga0209172_10004296	All Organisms → cellular organisms → Bacteria	19512	Open in IMG/M
3300025918\|Ga0207662_10117743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1663	Open in IMG/M
3300025927\|Ga0207687_11107853	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300025935\|Ga0207709_10081245	All Organisms → cellular organisms → Bacteria → Proteobacteria	2089	Open in IMG/M
3300025938\|Ga0207704_10270162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1287	Open in IMG/M
3300025961\|Ga0207712_10155832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1769	Open in IMG/M
3300026095\|Ga0207676_11122460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	778	Open in IMG/M
3300026118\|Ga0207675_100241309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1746	Open in IMG/M
3300027395\|Ga0209996_1059779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	584	Open in IMG/M
3300027695\|Ga0209966_1008225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1848	Open in IMG/M
3300027880\|Ga0209481_10193631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1014	Open in IMG/M
3300027907\|Ga0207428_10293518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1204	Open in IMG/M
3300028380\|Ga0268265_10010693	All Organisms → cellular organisms → Bacteria	6196	Open in IMG/M
3300028812\|Ga0247825_10683902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	738	Open in IMG/M
3300028812\|Ga0247825_11065902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	588	Open in IMG/M
3300030620\|Ga0302046_10199805	All Organisms → cellular organisms → Bacteria	1643	Open in IMG/M
3300031226\|Ga0307497_10090946	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300031226\|Ga0307497_10091865	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300031226\|Ga0307497_10134096	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300031455\|Ga0307505_10199921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	922	Open in IMG/M
3300031824\|Ga0307413_10681043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	852	Open in IMG/M
3300031879\|Ga0306919_10997689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	640	Open in IMG/M
3300031901\|Ga0307406_11039307	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300032004\|Ga0307414_12050595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	534	Open in IMG/M
3300032012\|Ga0310902_11159478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	543	Open in IMG/M
3300032060\|Ga0318505_10418265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	634	Open in IMG/M
3300032126\|Ga0307415_102151997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	545	Open in IMG/M
3300032144\|Ga0315910_10009573	All Organisms → cellular organisms → Bacteria	7525	Open in IMG/M
3300032144\|Ga0315910_10046142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3175	Open in IMG/M
3300032144\|Ga0315910_10136682	All Organisms → cellular organisms → Bacteria → Proteobacteria	1819	Open in IMG/M
3300032144\|Ga0315910_10373549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1089	Open in IMG/M
3300032157\|Ga0315912_10001394	All Organisms → cellular organisms → Bacteria → Proteobacteria	30067	Open in IMG/M
3300032157\|Ga0315912_10025795	All Organisms → cellular organisms → Bacteria → Proteobacteria	4770	Open in IMG/M
3300032157\|Ga0315912_10092643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2368	Open in IMG/M
3300032157\|Ga0315912_10238917	All Organisms → cellular organisms → Bacteria	1428	Open in IMG/M
3300032157\|Ga0315912_10408372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1076	Open in IMG/M
3300032174\|Ga0307470_10222467	All Organisms → cellular organisms → Bacteria → Proteobacteria	1225	Open in IMG/M
3300032180\|Ga0307471_103714419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	540	Open in IMG/M
3300032211\|Ga0310896_10932094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	504	Open in IMG/M
3300032261\|Ga0306920_101913199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	833	Open in IMG/M
3300032897\|Ga0335071_10574979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1079	Open in IMG/M
3300032954\|Ga0335083_11300036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	560	Open in IMG/M
3300032955\|Ga0335076_10773017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	842	Open in IMG/M
3300033417\|Ga0214471_10303257	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300034668\|Ga0314793_110039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	584	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.83%
Host-Associated	Host-Associated	30.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.86%
Plants	Host-Associated → Plants	30.17%
Aquatic	Environmental → Aquatic	18.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.24%
Sediment	Environmental → Aquatic → Sediment	15.52%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.93%
Marine	Environmental → Aquatic → Marine	1.72%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.72%
Cave	Environmental → Terrestrial → Cave	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	15.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.52%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.21%
Loam	Environmental → Terrestrial → Soil → Loam	9.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.59%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.72%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.72%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	15.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.31%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.86%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.86%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.41%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	14.66%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.31%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.45%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.59%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.72%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.72%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.86%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004047	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1	Environmental	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011395	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT200_2	Environmental	Open in IMG/M
3300011400	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT133_2	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300011413	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2	Environmental	Open in IMG/M
3300011427	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2	Environmental	Open in IMG/M
3300011428	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2	Environmental	Open in IMG/M
3300011432	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2	Environmental	Open in IMG/M
3300011436	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2	Environmental	Open in IMG/M
3300012040	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2	Environmental	Open in IMG/M
3300012113	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT100_2	Environmental	Open in IMG/M
3300012133	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT121_2	Environmental	Open in IMG/M
3300012228	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014879	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10D	Environmental	Open in IMG/M
3300015248	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT530_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300019997	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027395	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300034668	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1036123033	3300000956	Soil	MARVFTDIEREIRTLGRSDQVRLLRALLEELEALPEAMSPRVLRAEIELDLAAANDYVARHGSFAELAREHYAATDDDPV*
Ga0055499_100087372	3300004047	Natural And Restored Wetlands	MVRVFADIEQEIRALGRSDQVRLLRALLEELEALPDAMSPPVLRAEIEMDLAAANDYVVRHGSFAELAREHYAATDDDPV*
Ga0055498_101100742	3300004058	Natural And Restored Wetlands	MALTFADIEREILALSRRDQLRLMRALLDEVQALPDAMSPRVLRAEIAIDLVAANAYVERHGSFAEMAREHLAADDDSV*
Ga0063356_1029943891	3300004463	Arabidopsis Thaliana Rhizosphere	MARTFSDIEREIRTLGRHDQVRLVRALLEELEAPLPATMSPRVLRAEIAVDLAAANDYVARHGSFAEMACEHYAATDDDTV*
Ga0063356_1053933261	3300004463	Arabidopsis Thaliana Rhizosphere	MVRVFADIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEMDLAAANDYVARHGSFAELAREHCAAADDDPV*
Ga0066814_101092601	3300005162	Soil	MTRSFVDIEQQIRSLGPSDQVRLLRALLEELDALPDAMSPRVLRAEIELDLAAANDYVARHGSFAELARMHYAAADDDAV*
Ga0066388_1032626962	3300005332	Tropical Forest Soil	MARVFADIEQEIRALGRNDQVRLLRALLDELKALPSSMSPRVLRAEIAIDLAAANDYVARHRSFAELARE
Ga0068869_1002238562	3300005334	Miscanthus Rhizosphere	MARAFSDIEQEIRALGRNDQVRLLHALLEELEALPDRMSPRVLRAEIETDLAAANDYVARHGSFAEMAREHYAAADDDAV*
Ga0070680_1000728343	3300005336	Corn Rhizosphere	MARAFSDIEQEIRGLGRNDQVRLLRALLEELEALPCRMSPRVLRAEIETDLAAANEYVARHGSFAEMAREHYAAADDDAV*
Ga0070692_100549573	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MARAFSDIEQEIRALGRNDQVRLLHALLEELEALPDRMSPRVLRAEIETDLAAANEYVARHGSFAEMAREHYAAADDDAV*
Ga0070694_1000716714	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MARAFSDIEQEIRALGRNDQVRLLHALLEELEALPDRMSPRVLRAEIETDLAAANDYVARHGSFAEMARE
Ga0070694_1003632793	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MARAFADIEQVIRALGRNDQVRLLRALLDELEALPGAMSPRVLRAEIATDLVAANDYVARHGSFAEMAREHYAVMEVACKDE*
Ga0070681_107130961	3300005458	Corn Rhizosphere	MARAFSDIEQEIRALGRNDQVRLLRALLEELEALPCRMSPRVLRAEIETDLAAANEYVARHGSFAEMAREHYAAADDDAV*
Ga0068867_1021661231	3300005459	Miscanthus Rhizosphere	LRRVLSQASHRALGRSDQVRLLRALLDELEALPSTMSPRVLRAEIEIDLAAANDYVARHGSF
Ga0070686_1006598522	3300005544	Switchgrass Rhizosphere	MARAFSDIEQEIRALGRNDQVRLLHALLEELEALPDRMSPRVLRAEIETDLAAANDYVARHRSFAEMAREHYAAADDDAV*
Ga0070695_1003678693	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MARAFADIEQVIRALGRNDQVRLLRTLLDELEALPDAMSSRVLRGEIATDLVAANDYVERHGSFAEMAREHYAVMEVACKDE*
Ga0070693_1010749041	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MARVVAEIEQEIRALGRSDQVRLLRALLNELEALPSTMSPRVLRAEIEIDLAAANDYVARHGSFAEFAREHYA
Ga0070664_1012764591	3300005564	Corn Rhizosphere	LQIARVVAEIEQEIRALGRSDQVRLLRALLNELEALPSTMSPRVLRAEIEIDLAAANDYVARHGSFAEFAREHYAAEDDVPV*
Ga0066903_1029712722	3300005764	Tropical Forest Soil	MARIVADIEQEIRALGRNDQVRLLRALLDELEALPEAMSPRVLRAEIEIDLVAANDYVARHGSFAELAREHYAAEDDAPV*
Ga0074470_1056224113	3300005836	Sediment (Intertidal)	MARVFSDIEQEIRALGRNDQVRLLRALLDELEALPEGLRPRVLRAAIALDVAAANDYVTQHGSFAEFAREHYAAGDDAV*
Ga0068863_1024381181	3300005841	Switchgrass Rhizosphere	MARVVAEIEQEIRALGRSDQVRLLRALDELEALPSTMSPRVLRAEIEIDLAAANDYVARHGSFAEFAREHYAAEDDVPV*
Ga0068858_1008445772	3300005842	Switchgrass Rhizosphere	MARVVAEIEQEIRALGRSDQVRLLRALLNELEALPSTMSPRVLRAEIEIDLAAANDYVARHGSFAEFAREHYAAEDDVPV*
Ga0075428_1000154038	3300006844	Populus Rhizosphere	VARAFGDIEQDVRNLGRNDQVRLLRTLLDELEALPDAMSPRILRAEIQLDLAAANDYVARHGSFAEMAREHYISADHDSV*
Ga0075428_1026758262	3300006844	Populus Rhizosphere	MVRVFADIEQEIRALDRTDQVRLLRALLEELEALPHAMSPRVLRAEIEMDLAAANDYVARHGSFAELAREHYAATDDDPV*
Ga0075430_1015769682	3300006846	Populus Rhizosphere	MRVFADIEQEIRALGRSDQVRLLRALLDELEALPDAMSPRVLRAEIAIDLAAANDYVARHGSFAELAREHYAATDDDPV*
Ga0075433_100405268	3300006852	Populus Rhizosphere	MVRVFADIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIELDLAAANDYVARHGSFAEIAREHYAATDDDPV*
Ga0075420_1004473891	3300006853	Populus Rhizosphere	LAKGARRYASCMARAFGDIEQDVRNLSRNDQVRLLRTLLDELEALPDAMSPRILRAEIQLDLAAANDYVARHGSFAEMAREHYISADHDSV*
Ga0075425_1001177924	3300006854	Populus Rhizosphere	MARVFADIEQEIRALGRNDQVRLLRALLDELEALPHAMSPRVLRAEIAIDLAAANDYVARHGSFAEMARERYAAADDDPV*
Ga0073934_100018153	3300006865	Hot Spring Sediment	MARVFAHIEQEIRALGRSDQVRLLRALLEELEALPDAMAPRVLRAEIDIDLAAANDYVARHGSFAELAREHYAADDDPV*
Ga0079217_112387221	3300006876	Agricultural Soil	MARVFADIEQEIRALGRNDQVRLLRALLEELEALPDAMSPRVLRAEIELDLAAANDYVARHGSFAELAREHYAATDDDPV*
Ga0079215_106676122	3300006894	Agricultural Soil	MVRVFADIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEIDLAAANDYVARHGSFAELAREHYAATDDDPV*
Ga0075418_118994872	3300009100	Populus Rhizosphere	MVRVFADIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEIDLAAANDYVARHGSFAEIAREHYAATDDDPV*
Ga0114129_124335801	3300009147	Populus Rhizosphere	MVRVFADIEQEIRALDRTDQVRLLRALLEELEALPHAMSPRVLRAEIEMDLAAANDYDARHGSFAEIAREHYEGTDEDPV*
Ga0105347_10261473	3300009609	Soil	MVRVFVDIEQEIRALGRSDQVRLLRALLEELDALPDAMSPRVVRAEIEMDLAAANDYVARHGSFAELAREHYAATDDDPV*
Ga0105340_15563372	3300009610	Soil	MVRVFVDIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEMDLAAANDYVARHGSFAELAREHYAATDDDPV*
Ga0134122_104643913	3300010400	Terrestrial Soil	MARVVAEIEQEIRALGRSDQVRLLRALLDELEALPSTISPRVLRAEIEIDLAAANDYVARHGSFA
Ga0134123_106454821	3300010403	Terrestrial Soil	MARAFADIEQVIRALGRNDQVRLLRTLLDELEALPDAMSSRVLRAEIETDLVAANDYVERHGSFAEMAREHYAVMEVACKDE*
Ga0137315_10489551	3300011395	Soil	MVRVFVDIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAELEIDLAAANDYVARHGSFAELAREHYAATDDDPV*
Ga0137312_10863601	3300011400	Soil	MVRVFVDIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEIDLAAANDYVARHGSFAELAREHYAATDDDPV*
Ga0137424_11112961	3300011412	Soil	MVRVFVDIEQEIRALGRSDQVRLLRALLEELDALPDAMSPRVLRAEIEIDLAAANNYVTRHGSFAELAREHYAATDDDPV*
Ga0137333_11382202	3300011413	Soil	MVRVFADIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEMDLAAANDYVARHGSFAELAREHYAATDDDPV*
Ga0137448_11787021	3300011427	Soil	GRSDQVRLLRALLEELEALPDAMSPRVLRAEIEMDLAAASDYVARHGSFAELAREHYAATDDDPV*
Ga0137456_10776102	3300011428	Soil	MVRVFVDIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEMDLAAANDYVARHGSFAELAREHYTA*
Ga0137428_12364921	3300011432	Soil	VRVFADIEHEIWALGRSDQVRLLRALLEALEALPNAMSPRVLRAEIALDLATANDYVARHGSFAELAREHYTATDDDPV*
Ga0137458_12650082	3300011436	Soil	MVRVFVDIEQEIRALGRSDQVRLLRALLEELGALPEAMSPRVLRAEIEMDLAAANDYVARHGSFAELAREHYAATDDDPV*
Ga0137461_10129221	3300012040	Soil	MVRVFVDIEQEIRALGRSDQVRLLRALLEELEALPEAMSPRVLRAEIEMDLAAANDYVARHGSFAELAREHYAATDDDPV*
Ga0137328_10109581	3300012113	Soil	MVRVFVDIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEMDLAAANDYVERHGSFAELAREHYAATDDDPV*
Ga0137329_10446241	3300012133	Soil	MARVFADIEQEIRTLGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEMDLAAANDYVARHGSFAELAREHYTA*
Ga0137459_11667992	3300012228	Soil	MVRVFADIEQEIRTLGRSDQVRLLRALLEELEAPLPDAMSPRVLRAEIAIDLAAANDYVARHGSFAELAREHYAATDDDPV*
Ga0137435_12253311	3300012232	Soil	MVRVFVDIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEIDLAAANDYVARHGSFAELAREHYAATDDDQV
Ga0157305_103011051	3300012891	Soil	MARTFSDIEREIRTLGRHDQVRLVRALLEELEAPLPATMSPRVLRAEIAVDLAAANDYVARHGSFAEMAC
Ga0157308_104746681	3300012910	Soil	MARTFSDIEREIRTLGRHDQVRLVRALLEELEAPLPATMSPRVLRAEIAVDLAAANDYVARHGSFAEMACEHYAATDDD
Ga0157307_11559581	3300013096	Soil	PRYALCMARTFSDIEREIRTLGRHDQVRLVRALLEELEAPLPATMSPRVLRAEIAVDLAAANDYVARHGSFAEMACEHYAATDDDTV*
Ga0157380_105545793	3300014326	Switchgrass Rhizosphere	MVRVFADIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEIDLAAANDYVARHRSFAELARQHYAATDDDAV*
Ga0180062_10849252	3300014879	Soil	MVRVFVDIEQEIRALGRSDQVRLLRALLEELEDLPDAMSPRVLRAEIEMDLAAANDYVARHGSFAELAREHYAATDDDPV*
Ga0180079_10394283	3300015248	Soil	MVRVFVDIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEMDLAAANDYVARHGSFA
Ga0132258_109178541	3300015371	Arabidopsis Rhizosphere	MARVVAEIEQEIRALDRSDQVRLLRALLNELEALPSTMSPRVLRAEIEIDLAAANDYVARHGSFAEFAREHYAAEDDVPV*
Ga0132256_1013364841	3300015372	Arabidopsis Rhizosphere	MARVFADIEQEIRALGRNDQVRLLRALLDELAALPRAMSPRVLRAEIAIDLAAANDYVARHGSFAEIAREHYAPADDDPV*
Ga0132257_1016927713	3300015373	Arabidopsis Rhizosphere	MARVFADIEQEIRALGRNDQVRLLRALLDELEALPRAMSPRVLRAEIAIDLAAANDYVARHGSFAEMARERYAAADDDPV*
Ga0190265_137370031	3300018422	Soil	MMRVLADIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEMDLAAANDYVARHGSFAELAREHYTA
Ga0190275_113042882	3300018432	Soil	MRVLADIEQEIRALGRTDQVRLLRALLEELEALPDDMSPRVLRAEIEIDLAAANDYVARHGSFAELAREHYAATDDDPV
Ga0190270_114094071	3300018469	Soil	MVRVFVDIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEIDLAAANDYVARHGSFAELAREHY
Ga0190274_102262163	3300018476	Soil	MVRAFADIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEIDLAAANDYVARHGSFAELAREHYAATDDDPV
Ga0190274_115656662	3300018476	Soil	MARVFADIEQEIRALGRALLEELEALPDATRPRVLRPAIEIDLAAANDYVAQHGSFAESAREYYAAGDDAV
Ga0190271_100924604	3300018481	Soil	MVRVFADIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEIDLAAANDYVARHGSFAELAREHYAVLDDDPI
Ga0190271_109944302	3300018481	Soil	MARVFADIEQEIRTLGRNDQVRLLRALLEELEALPDAMRPGDLRAAIALDVAAANDYVAQHGSFTEFAREHYAAGDDAV
Ga0190264_100540462	3300019377	Soil	MVRVFADIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEMDLAAANDYVARHGSFAELAREHYAATDDDPV
Ga0187893_101142175	3300019487	Microbial Mat On Rocks	MARVFADIEQEVRTLGRNDQVRLLRALLDELEALPKAMSPRVVRAEIELDLAAANDYVARHGSFAELAREHYAAADDDPV
Ga0193711_10126512	3300019997	Soil	MVRVFVDIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEIDLAAAKDYVARHGSFAELAREHYAATDDDPV
Ga0247790_101452182	3300022915	Soil	YALCMARTFSDIEREIRTLGRHDQVRLVRALLEELEAPLPATMSPRVLRAEIAVDLAAANDYVARHGSFAEMACEHYAATDDDTV
Ga0209172_100042963	3300025310	Hot Spring Sediment	MARVFAHIEQEIRALGRSDQVRLLRALLEELEALPDAMAPRVLRAEIDIDLAAANDYVARHGSFAELAREHYAADDDPV
Ga0207662_101177433	3300025918	Switchgrass Rhizosphere	LGRNDQVRLLHALLEELEALPDRMSPRVLRAEIETDLAAANDYVARHGSFAEMAREHYAAADDDAV
Ga0207687_111078532	3300025927	Miscanthus Rhizosphere	MARVVAEIEQEIRALGRSDQVRLLRALLNELEALPSTMSPRVLRAEIEIDLAAANDYVARHGSFAEFAREHYAAEDDVPV
Ga0207709_100812451	3300025935	Miscanthus Rhizosphere	MARAFSDIEQEIRALGRNDQVRLLHALLEELEALPDRMSPRVLRAEIETDLAAANEYVARHGSFAEMAREHYAAADDDAV
Ga0207704_102701623	3300025938	Miscanthus Rhizosphere	MARAFSDIEQEIRALGRNDQVLLLHALLEELEALPDRMSPRVLRAEIETDLAAANDYVARHGSFAEMAREHYAAADDDAV
Ga0207712_101558323	3300025961	Switchgrass Rhizosphere	MARAFSDIEQEIRALGRNDQVRLLHALLEELEALPDRMSPRVLRAEIETDLAAANDYVARHGSF
Ga0207676_111224602	3300026095	Switchgrass Rhizosphere	MARVVAEIEQEIRALGRSDQVRLLRALDELEALPSTMSPRVLRAEIEIDLAAANDYVARHGSFAEFAREHYAAEDDVPV
Ga0207675_1002413092	3300026118	Switchgrass Rhizosphere	MARAFSDIEQEIRALGRNDQVRLLRALLEELEALPCRMSPRVLRAEIETDLAAANEYVARHGSFAEMAREHYAAADDDAV
Ga0209996_10597792	3300027395	Arabidopsis Thaliana Rhizosphere	MMRVFSDIELEIRALGRNDQVRLLRTLLDELEALPDAMSPRVLRAEIAIDLAAANDYVARHGSFAEMARGYSAAADDDSV
Ga0210002_10796321	3300027617	Arabidopsis Thaliana Rhizosphere	RNDQVRLLRTLLDELEALPDAMSPRVLRAEIAIDLAAANDYVARHGSFAEMARGYSAAADDDSV
Ga0209966_10082252	3300027695	Arabidopsis Thaliana Rhizosphere	MARVFSDIELEIRALGRNDQVRLLRTLLDELEALPDAMSPRVLRAEIAIDLAAANDYVARHGSFAEMARGYSAAADDDSV
Ga0209481_101936313	3300027880	Populus Rhizosphere	VARAFGDIEQDVRNLGRNDQVRLLRTLLDELEALPDAMSPRILRAEIQLDLAAANDYVARHGSFAEMAREHYISADHDSV
Ga0207428_102935182	3300027907	Populus Rhizosphere	VARAFGDIEQDVRNLGRNDQVRLLRTLLDELEALPDAMSPRILRAEIQSDLAAANDYVARHGSFAEMAREHYISADHDSV
Ga0268265_100106934	3300028380	Switchgrass Rhizosphere	MARAFSDIEQEIRALGRNDQVRLLHALLEELEALPDRMSPRVLRAEIETDLAAANDYVARHGSFAEMAREHYAAADDDAV
Ga0247825_106839022	3300028812	Soil	MMRVFADIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLHAEIEMDWAAANDYVARHGSFAELAREPLPPS
Ga0247825_110659022	3300028812	Soil	MRFFADIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIAMDLAAANDYVARHGSFAELAREHYAATDDDPV
Ga0302046_101998052	3300030620	Soil	MVRVFADIEQEIRALGRSDQVRLLRALLDELEALPDAMSPRVLHAEIEIDLAAANDYVARHGSFAELAREHYAATDDDPG
Ga0307497_100909462	3300031226	Soil	MARVLADIENEVRALRRSDQVRLLRALLDELETLPAGRSSKVIRAEIEVDVAAANDYVERHGSFADLARALHRDGR
Ga0307497_100918651	3300031226	Soil	YADIEQDIRALGRNDQVRLLRTLLDELEALPDAMSSRVLRAEIATDLVAANDYVERHGSFAEMAREHYAVMEVACKDE
Ga0307497_101340962	3300031226	Soil	MARVFADIEQEIRALGRSDQVRLLRVLLEEVKALPDAMSPRALRAEIEMDLAAANDYVARHGSFSELAREHYAAAD
Ga0307505_101999211	3300031455	Soil	MVRVFADIEQEIRALGRSDQVRLLRALLEELEAIPNAMSPRVLRAAIEIDLAAANDYVARHGSFAELAREHCAALDDEPV
Ga0307413_106810432	3300031824	Rhizosphere	MARVFADIEHEIRALARRDQVRLLRALLDELEALPHAMSPRVLRAEIAIDLAATNDYVARHGSFAELAREHYAATDDDPV
Ga0306919_109976892	3300031879	Soil	MARVFADIEQQIRALGRNDQVRLLRALLEELDALPDAMSPRVLRAEIEMDLAAANDYVALHGSFAELAREQYAADDDAV
Ga0307406_110393072	3300031901	Rhizosphere	MARGFADIEHEIRALARRDQVRLLRALLDELEALPHAMSPRVLRAEIAIDLAATNDYVARHGSFAELAREHYAATDDDPV
Ga0307414_120505951	3300032004	Rhizosphere	MARVFADIEHEIRALARRDQVRLLRALLDELEALPHAMSPRVLRAEIAIDLAATNDYVARHGSFAELAREHYAATDDD
Ga0310902_111594781	3300032012	Soil	FADIEQEIRALGRSDQVRLLRALLDALEALPDAMSPRVLRAEIEMDLAAANDYVARHGSFAGLAREHYAATDDDPV
Ga0318505_104182651	3300032060	Soil	EQQIRALSRNDQVRLLRALLEALDALPDAMSPRVLRAEIEMDLAAANDYVALHGSFAELAREQYAADDDAV
Ga0307415_1021519971	3300032126	Rhizosphere	MVRVVIDIEQEIRALGRSDQVRLLRALLEELKALPDAMSPRVLRAEIEIDLAAADDYVARHGSFADLAREHYAATDDDPV
Ga0315910_100095739	3300032144	Soil	MMRVFADIEQEIRALGRNDQVRLLRALLDELEALPKAMSPRVLRAEIEMDLVAANDYVARHGSFAELAREHYAATDDERRSTW
Ga0315910_100461425	3300032144	Soil	MLRVFADIEQEIRALGRSDQVRLLRALLDELETLPDAVSPRVLRAEIAIDLAAANDYVARHGSFAELAREHYAATDDDPV
Ga0315910_101366823	3300032144	Soil	MVRVFADIEQEIRALGRSDQVRLLRALLEELEALPDVMSPRVLRAAIETDLAAANDYVARHGSFAELAREHYAAIDDDPI
Ga0315910_103735491	3300032144	Soil	MMRAFTEIEQDIRALGRRDQVRLLRALLDELKALPDAMSPRVLRAEIELDLAAANDYVARYGSFAELAREHYAARDDDPV
Ga0315912_100013949	3300032157	Soil	MVRVFADIEQEIRALGRSDQVRLLRALLDELEALPDAMSPRVLRAEIEIDLAAANDYVARHGSFAELACEHYAATDDGPI
Ga0315912_100257954	3300032157	Soil	MRVFADIEQEIRALGRSDQVRLLRALLEELEALPDAMSPPVLRAEIEMDLAAANDYAVRHGSFAELAREHYAATDDDPV
Ga0315912_100926435	3300032157	Soil	MARVFADIEQEIRALGRNDQVRLLRALLDELEALPKAMSPRVLRAEIEMDLVAANDYVARHGSFAELAREHYAATDDERRSTW
Ga0315912_102389173	3300032157	Soil	MARVFADIEQEIRALGRNDQVRLLRALLEELEALPDAMCPRILRAAIAIDLAAANDYVAQHGSFAELAREHYAADDDAV
Ga0315912_104083722	3300032157	Soil	MLLRMKRAFSDIEQEIRALGRKDQVRLVRALLEELEAPLPAAMSPRVLRAEIAVDLAAANDYVARHGSFAEMAREHYAADDDAV
Ga0307470_102224671	3300032174	Hardwood Forest Soil	MARTFADIESEIRALSRNDQVRVLRSLLDDLEALPYAMSPRVIRAEIATDVAAANDYVARHGSFAEMARELYAAGDDDAV
Ga0307471_1037144192	3300032180	Hardwood Forest Soil	IEHEIRALGRNDQVRLLRALLDELEALPDAMSPRVLRAEIAIDLAAANDYVARKGSFAEMAREHYAAADDDPV
Ga0310896_109320941	3300032211	Soil	MVRVFADIEQEIRALGRSDQVRLLRALLDALEALPDAMSPRVLRAEIEMDLAAANDYVARHGSFAELAREHYAATDDDPV
Ga0306920_1019131992	3300032261	Soil	MARVFADIEQQIRALSRNDQVRLLRALLEELDALPDAMSPRVLRAEIEMDLAAANDYVALHGSFAELAREQYAADDDAV
Ga0335071_105749792	3300032897	Soil	MAHSLTDIEQQIRSLGRSDQVRLLRALLEELDALPDAMSPRVLRAEIEVDLAAANDYVARHGSFA
Ga0335083_113000361	3300032954	Soil	MAHSLTDIEQQIRSLGRSDQVRLLRALLEELDALPDAMSPRVLRAEIEVDLAAANDYVARHGSFAELAREHYADDDAV
Ga0335076_107730172	3300032955	Soil	MARVVADIEQEFRALGRYDQVRLLRALLDELEALPSTMSPRVLRAEIEIDLAAANDYVARHGSFAELAREHYAAEDDAAV
Ga0214471_103032574	3300033417	Soil	MVRVFVDIEQEIRALGRSDQVRLLRALLEELEALPDAMSPRVLRAEIEIDLAAANDYVARHGSFAELAREH
Ga0314793_110039_302_544	3300034668	Soil	MARAFSDIEQEIRALGRNDQVRLLHALLEELEALPDRMSPRVLRAEIETDLAAANDYVARHGSFAEMARQHYAAADDDAV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078365

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences