Metagenome Family F078327

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078327
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	57 residues
Representative Sequence	MSNLLLILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNEEDDTYTF
Number of Associated Samples	69
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	38.79 %
% of genes from short scaffolds (< 2000 bps)	83.62 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.207 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (31.034 % of family members)
Environment Ontology (ENVO)	Unclassified (55.172 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (54.310 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 73.33% β-sheet: 0.00% Coil/Unstructured: 26.67%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF04404	ERF	6.90
PF01510	Amidase_2	5.17
PF02195	ParBc	3.45
PF07603	DUF1566	0.86
PF03275	GLF	0.86
PF04851	ResIII	0.86
PF13385	Laminin_G_3	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0562	UDP-galactopyranose mutase	Cell wall/membrane/envelope biogenesis [M]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.28 %
Unclassified	root	N/A	26.72 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.28 %
Unclassified	root	N/A	26.72 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.21 %
Unclassified	root	N/A	26.72 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	12.07 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	60.34 %
Unclassified	root	N/A	26.72 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	12.07 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	60.34 %
Unclassified	root	N/A	26.72 %
Methanomada group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group	12.07 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	60.34 %
Unclassified	root	N/A	26.72 %
Methanobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria	12.07 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.86 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	60.34 %
Unclassified	root	N/A	26.72 %
Methanobacteriales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales	12.07 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	0.86 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales	60.34 %
Unclassified	root	N/A	26.72 %
Methanobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae	12.07 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Actinomycetales bacterium mxb001	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	60.34 %
Unclassified	root	N/A	26.72 %
Methanobrevibacter	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter	12.07 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Actinomycetales bacterium mxb001	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	60.34 %
Unclassified	root	N/A	26.72 %
unclassified Methanobrevibacter	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter	12.07 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Actinomycetales bacterium mxb001	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	60.34 %
Unclassified	root	N/A	26.72 %
Methanobrevibacter sp.	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	12.07 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002098\|JGI24219J26650_1032852	Not Available	627	Open in IMG/M
3300005581\|Ga0049081_10286931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	570	Open in IMG/M
3300005582\|Ga0049080_10132740	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	838	Open in IMG/M
3300006863\|Ga0075459_1037822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	810	Open in IMG/M
3300006875\|Ga0075473_10008912	Not Available	3909	Open in IMG/M
3300006920\|Ga0070748_1083055	Not Available	1235	Open in IMG/M
3300007094\|Ga0102532_1170745	Not Available	1709	Open in IMG/M
3300007234\|Ga0075460_10219971	Not Available	641	Open in IMG/M
3300007363\|Ga0075458_10032961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	1640	Open in IMG/M
3300007538\|Ga0099851_1332417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	532	Open in IMG/M
3300007544\|Ga0102861_1182043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	575	Open in IMG/M
3300007735\|Ga0104988_10759	Not Available	26584	Open in IMG/M
3300008266\|Ga0114363_1036516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	2035	Open in IMG/M
3300008266\|Ga0114363_1218651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	567	Open in IMG/M
3300008450\|Ga0114880_1035825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	2186	Open in IMG/M
3300008450\|Ga0114880_1036091	Not Available	2175	Open in IMG/M
3300008450\|Ga0114880_1149059	Not Available	844	Open in IMG/M
3300008450\|Ga0114880_1189184	Not Available	702	Open in IMG/M
3300009111\|Ga0115026_11624750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	542	Open in IMG/M
3300010354\|Ga0129333_10079421	Not Available	3045	Open in IMG/M
3300010354\|Ga0129333_10216105	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1739	Open in IMG/M
3300010354\|Ga0129333_10316022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	1395	Open in IMG/M
3300010354\|Ga0129333_10795415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	807	Open in IMG/M
3300010354\|Ga0129333_11263169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	611	Open in IMG/M
3300010354\|Ga0129333_11363252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	584	Open in IMG/M
3300010354\|Ga0129333_11761746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	503	Open in IMG/M
3300010354\|Ga0129333_11763622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	502	Open in IMG/M
3300010370\|Ga0129336_10352247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	810	Open in IMG/M
3300010370\|Ga0129336_10371614	Not Available	784	Open in IMG/M
3300010370\|Ga0129336_10441936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	706	Open in IMG/M
3300010370\|Ga0129336_10539175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	626	Open in IMG/M
3300010370\|Ga0129336_10750426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	515	Open in IMG/M
3300010370\|Ga0129336_10768993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	508	Open in IMG/M
3300011984\|Ga0119931_1000226	Not Available	6816	Open in IMG/M
3300011984\|Ga0119931_1041776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	554	Open in IMG/M
3300012666\|Ga0157498_1011922	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1381	Open in IMG/M
3300013004\|Ga0164293_10423082	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	892	Open in IMG/M
3300013005\|Ga0164292_10294105	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1113	Open in IMG/M
3300013087\|Ga0163212_1127873	Not Available	808	Open in IMG/M
(restricted) 3300013126\|Ga0172367_10417318	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	755	Open in IMG/M
(restricted) 3300013126\|Ga0172367_10445517	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	722	Open in IMG/M
(restricted) 3300013126\|Ga0172367_10475961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	691	Open in IMG/M
(restricted) 3300013127\|Ga0172365_10648123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	601	Open in IMG/M
(restricted) 3300013127\|Ga0172365_10735684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	558	Open in IMG/M
(restricted) 3300013130\|Ga0172363_10263429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	1149	Open in IMG/M
(restricted) 3300013130\|Ga0172363_10584048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	708	Open in IMG/M
(restricted) 3300013131\|Ga0172373_10415753	Not Available	835	Open in IMG/M
(restricted) 3300013131\|Ga0172373_10623717	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	643	Open in IMG/M
(restricted) 3300013131\|Ga0172373_10898560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	513	Open in IMG/M
(restricted) 3300013132\|Ga0172372_10888730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	546	Open in IMG/M
(restricted) 3300013132\|Ga0172372_10896657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	542	Open in IMG/M
(restricted) 3300013132\|Ga0172372_10923209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	532	Open in IMG/M
(restricted) 3300013133\|Ga0172362_10087042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	2367	Open in IMG/M
(restricted) 3300013133\|Ga0172362_10791036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	632	Open in IMG/M
(restricted) 3300013137\|Ga0172375_10417493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	921	Open in IMG/M
(restricted) 3300013137\|Ga0172375_10943288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	518	Open in IMG/M
3300013372\|Ga0177922_10824230	Not Available	1588	Open in IMG/M
3300013372\|Ga0177922_11112666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	574	Open in IMG/M
(restricted) 3300014720\|Ga0172376_10184586	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1344	Open in IMG/M
(restricted) 3300014720\|Ga0172376_10614109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	595	Open in IMG/M
(restricted) 3300014720\|Ga0172376_10617773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	593	Open in IMG/M
3300017785\|Ga0181355_1058419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	1631	Open in IMG/M
3300017785\|Ga0181355_1244425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	690	Open in IMG/M
3300017785\|Ga0181355_1335365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	559	Open in IMG/M
3300017785\|Ga0181355_1365859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	527	Open in IMG/M
3300017788\|Ga0169931_10479478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	886	Open in IMG/M
3300017788\|Ga0169931_10571224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	776	Open in IMG/M
3300017788\|Ga0169931_10573395	Not Available	774	Open in IMG/M
3300019784\|Ga0181359_1015692	Not Available	2805	Open in IMG/M
3300020074\|Ga0194113_10430026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	963	Open in IMG/M
3300020183\|Ga0194115_10158820	Not Available	1167	Open in IMG/M
3300020183\|Ga0194115_10436029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	553	Open in IMG/M
3300020197\|Ga0194128_10226703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	981	Open in IMG/M
3300020200\|Ga0194121_10287138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	844	Open in IMG/M
3300020518\|Ga0208721_1015449	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	999	Open in IMG/M
3300020530\|Ga0208235_1039803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	554	Open in IMG/M
3300020554\|Ga0208599_1003444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	2876	Open in IMG/M
3300020570\|Ga0208465_1007267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	1645	Open in IMG/M
3300021961\|Ga0222714_10222180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	1077	Open in IMG/M
3300021963\|Ga0222712_10001172	Not Available	33452	Open in IMG/M
3300021963\|Ga0222712_10564912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	662	Open in IMG/M
3300025585\|Ga0208546_1006188	Not Available	3301	Open in IMG/M
3300025635\|Ga0208147_1022085	Not Available	1706	Open in IMG/M
3300025635\|Ga0208147_1026973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	1525	Open in IMG/M
3300025635\|Ga0208147_1057384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	988	Open in IMG/M
3300025635\|Ga0208147_1116681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	639	Open in IMG/M
3300025732\|Ga0208784_1009752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	3284	Open in IMG/M
3300025848\|Ga0208005_1027642	Not Available	1747	Open in IMG/M
3300025848\|Ga0208005_1092312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	944	Open in IMG/M
3300027608\|Ga0208974_1166307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	551	Open in IMG/M
3300027659\|Ga0208975_1153534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	641	Open in IMG/M
3300027659\|Ga0208975_1161968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	618	Open in IMG/M
3300027899\|Ga0209668_10801937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	634	Open in IMG/M
3300029930\|Ga0119944_1002695	Not Available	3035	Open in IMG/M
3300029933\|Ga0119945_1007438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	1474	Open in IMG/M
3300031758\|Ga0315907_10058874	Not Available	3355	Open in IMG/M
3300031758\|Ga0315907_10170496	Not Available	1836	Open in IMG/M
3300031857\|Ga0315909_10315583	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1160	Open in IMG/M
3300033488\|Ga0316621_10396522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	939	Open in IMG/M
3300033557\|Ga0316617_102021521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	592	Open in IMG/M
3300033993\|Ga0334994_0283061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	851	Open in IMG/M
3300033996\|Ga0334979_0116158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	1651	Open in IMG/M
3300034020\|Ga0335002_0012773	Not Available	6300	Open in IMG/M
3300034021\|Ga0335004_0329028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	892	Open in IMG/M
3300034021\|Ga0335004_0623302	Not Available	568	Open in IMG/M
3300034092\|Ga0335010_0694828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	501	Open in IMG/M
3300034101\|Ga0335027_0391276	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	905	Open in IMG/M
3300034104\|Ga0335031_0202359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	1343	Open in IMG/M
3300034104\|Ga0335031_0463696	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	779	Open in IMG/M
3300034106\|Ga0335036_0116402	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1941	Open in IMG/M
3300034120\|Ga0335056_0576737	Not Available	583	Open in IMG/M
3300034355\|Ga0335039_0481188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	625	Open in IMG/M
3300034356\|Ga0335048_0595025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001	513	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.28%
Terrestrial	Environmental → Terrestrial	1.72%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	70.69%
Marine	Environmental → Aquatic → Marine	27.59%
Soil	Environmental → Terrestrial → Soil	1.72%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	50.00%
Coastal	Environmental → Aquatic → Marine → Coastal	24.14%
Lentic	Environmental → Aquatic → Freshwater → Lentic	13.79%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	3.45%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Marine → Unclassified	2.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	44.83%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	24.14%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	10.34%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	5.17%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	3.45%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.59%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	2.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.86%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.86%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	31.03%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	12.07%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	12.07%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	8.62%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	5.17%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	4.31%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	4.31%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.59%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.59%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.59%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.59%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	1.72%
Drinking Water Treatment Plant	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant	1.72%
Aquatic	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic	1.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.72%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.86%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.86%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	0.86%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.86%
Freshwater, Surface Ice	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice	0.86%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002098	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B7 metagenome	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300006863	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA	Environmental	Open in IMG/M
3300006875	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300007094	Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A)	Environmental	Open in IMG/M
3300007234	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA	Environmental	Open in IMG/M
3300007363	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007544	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3	Environmental	Open in IMG/M
3300007735	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct	Environmental	Open in IMG/M
3300008266	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300010370	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA	Environmental	Open in IMG/M
3300011984	Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107	Environmental	Open in IMG/M
3300012666	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental	Open in IMG/M
3300013087	Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L	Environmental	Open in IMG/M
3300013122 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10.3m	Environmental	Open in IMG/M
3300013126 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m	Environmental	Open in IMG/M
3300013127 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm	Environmental	Open in IMG/M
3300013130 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2	Environmental	Open in IMG/M
3300013131 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m	Environmental	Open in IMG/M
3300013132 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5m	Environmental	Open in IMG/M
3300013133 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2	Environmental	Open in IMG/M
3300013137 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_11.1m	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300014720 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35m	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300017788	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020074	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m	Environmental	Open in IMG/M
3300020183	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface	Environmental	Open in IMG/M
3300020197	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65m	Environmental	Open in IMG/M
3300020200	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015020 Mahale Deep Cast 50m	Environmental	Open in IMG/M
3300020518	Freshwater microbial communities from Lake Mendota, WI - 17AUG2010 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020530	Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020554	Freshwater microbial communities from Lake Mendota, WI - 17AUG2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020570	Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental	Open in IMG/M
3300025585	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025635	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025732	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025848	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300027608	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)	Environmental	Open in IMG/M
3300027659	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300029930	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727	Environmental	Open in IMG/M
3300029933	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2	Environmental	Open in IMG/M
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental	Open in IMG/M
3300033996	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004	Environmental	Open in IMG/M
3300034020	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055	Environmental	Open in IMG/M
3300034021	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057	Environmental	Open in IMG/M
3300034092	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069	Environmental	Open in IMG/M
3300034101	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107	Environmental	Open in IMG/M
3300034104	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M
3300034120	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172	Environmental	Open in IMG/M
3300034355	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135	Environmental	Open in IMG/M
3300034356	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24219J26650_10328522	3300002098	Lentic	MSNLILILPFVLSMVYLMADFHDRWWWYISFCALPVIYLCIFAYLKKTNELNKEDDTYTF
Ga0049081_102869311	3300005581	Freshwater Lentic	MSNLLLIIPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLK
Ga0049080_101327402	3300005582	Freshwater Lentic	LPKPILLMANLLLIIPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKENNELNEEDDTYTF*
Ga0075459_10378222	3300006863	Aqueous	MSNLLLITPFVLLMVYLMADFHDSYLWYTTFCAVPIIYLCIFAYLKKNNELNEEDDTYTF
Ga0075473_100089121	3300006875	Aqueous	MSNLLLIIPFLLSMVYMMADFHHSILWYISFCALPVIYLCIFAYLKKNNELN
Ga0070748_10830553	3300006920	Aqueous	MSNLLLILPFVLSMVYMMADFHDRWWWYISFCALPVIYLCIFAYLKKTNELNKEDDTYTF
Ga0102532_11707452	3300007094	Freshwater Lake	MSNLLLIIPFVLTMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKHTNELNKEDDTYTF
Ga0075460_102199711	3300007234	Aqueous	MSNLLLIIPFLLSMVYMMADFHDRWWWYISFCALPVIYLCIFAYLKKNNELNKEDDTDTF
Ga0075458_100329616	3300007363	Aqueous	MSNLLLILPFLLSMVYMMADFHHSILWYISFLALPVIYLCIFAYLKKNNELNEEDDTYTF
Ga0099851_13324172	3300007538	Aqueous	MANLLLILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNEEDDTYTF
Ga0102861_11820433	3300007544	Estuarine	MSNLLLILPFLLSMVYMMADFHHSLLWYISFCALPVIYLCIFAYLKKTNELNKDDDT
Ga0104988_1075912	3300007735	Freshwater	MTNLLLIIPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNKEDDTYTF
Ga0114363_10365161	3300008266	Freshwater, Plankton	MSNLLLIIPFLLSMVYMMADFHHSLLWYISFCALPIIYLCIFAYLKKNNELNEEDD
Ga0114363_12186511	3300008266	Freshwater, Plankton	MNNLLLILPFLLSMVYMMADFHDRWWWYISFCALPIIYL
Ga0114880_10358256	3300008450	Freshwater Lake	MSNLLLIIPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKHTNELNNEDDTYTF
Ga0114880_10360911	3300008450	Freshwater Lake	ILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKHTNELNKEDDTYTF*
Ga0114880_11490591	3300008450	Freshwater Lake	PFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNEEDDTYTF*
Ga0114880_11891841	3300008450	Freshwater Lake	LILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNQEDDTDTF*
Ga0115026_116247501	3300009111	Wetland	ILLMANLLLIIPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKHTNELNKEDDTYTF*
Ga0129333_100794218	3300010354	Freshwater To Marine Saline Gradient	MANLLLIIPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKENNELNEEDDTYTF
Ga0129333_102161054	3300010354	Freshwater To Marine Saline Gradient	MANLLLILPFLLSMVYMMADFHDRWWWYISFCALPFIYLCIFAYLKKNNELNKEDDTYTF
Ga0129333_103160226	3300010354	Freshwater To Marine Saline Gradient	MSNLLLITPFVLLMVFLMADFHHSILWYISFCALPIIYLCIFAYLKKNNELNEEDDTYTF
Ga0129333_107954151	3300010354	Freshwater To Marine Saline Gradient	MSNLLLILPFLLTMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNKEDDTYTF
Ga0129333_112631692	3300010354	Freshwater To Marine Saline Gradient	MANLLLILPFLLSMVYMMADFHDRWWWYISFCALPVIYLCIFAYLKKTNELNKEDDTYTF
Ga0129333_113632521	3300010354	Freshwater To Marine Saline Gradient	MSNLLLIIPFLLSMVYMMADFHDRWWWYISFCALPVIYLCIFAYLK
Ga0129333_117617461	3300010354	Freshwater To Marine Saline Gradient	MANLLLILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNEEDDTYTF
Ga0129333_117636221	3300010354	Freshwater To Marine Saline Gradient	NLLLITPFVLLMVYLMADFHDSYLWYTTFCAVPIVYLCILRHLKQNNELNEEDDTYTF*
Ga0129336_103522473	3300010370	Freshwater To Marine Saline Gradient	MSNLLLIIPFLLSMVYMMADFHDRWWWYISFCALPVIYLCIFAYLKHTNELNKEDDTYTF
Ga0129336_103716141	3300010370	Freshwater To Marine Saline Gradient	LILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKNNELNEEDDTYTF*
Ga0129336_104419363	3300010370	Freshwater To Marine Saline Gradient	MSNLLLILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNEEDD
Ga0129336_105391753	3300010370	Freshwater To Marine Saline Gradient	MSKLLLIIPFLLSMVYMMADFHHSLLWYISFCALPIIYLCIFAYLKHTNELNKEDDTYTF
Ga0129336_107504263	3300010370	Freshwater To Marine Saline Gradient	MANLLLILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYL
Ga0129336_107689931	3300010370	Freshwater To Marine Saline Gradient	MSNLLLILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTN
Ga0119931_10002263	3300011984	Drinking Water Treatment Plant	MSNLLLILPFVLSMVYMMADFHHSLLWYISFCALPVIYLCIFAYLKKTNELNKEDDTYTF
Ga0119931_10417761	3300011984	Drinking Water Treatment Plant	MSNLLLILPFVLSMVYMMADFHHKWWWYISFCALPIIYLCIFAYLK
Ga0157498_10119223	3300012666	Freshwater, Surface Ice	MSNLLLILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNKEDDTYTF
Ga0164293_104230822	3300013004	Freshwater	MANLLLILTFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNQEDDTYTF
Ga0164292_102941052	3300013005	Freshwater	MSNLLLIIPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNQEDDTYTF
Ga0163212_11278732	3300013087	Freshwater	MSNVLLIIPFVLLMVYLMADFHDSYLWYITFCAVPCIYLCILRHLKLNNELNEEDDTHTF
(restricted) Ga0172374_11411171	3300013122	Freshwater	MSNLLLITPFTLLMVFLMADFHDSYLWYTTFCAVPIIYLCILRH
(restricted) Ga0172367_104173181	3300013126	Freshwater	MSNLLLITPFVLLMVFLMADFHDSYLWYTTFCAVPIIYLCILRHLKSNNELNEEDDTHTF
(restricted) Ga0172367_104455172	3300013126	Freshwater	MSNLLLITPFTLLMVFLMADFHDSYLWYITFCAVPCIYLCILQHLKLNHQLNEEDDTHTF
(restricted) Ga0172367_104759613	3300013126	Freshwater	MSNLLLITPFVLLMVFLMADFHDSYLWYTTFCAVPCIYLCILQHLKSNHELNEEDDTHTF
(restricted) Ga0172367_106380443	3300013126	Freshwater	MSNLLLIIPFVLLMVFLMADFHDSYLWYTTFCAVPIIYLCILRHLK
(restricted) Ga0172365_106481231	3300013127	Sediment	MSNLLLITPFVLLQVYLMADFHHSYLWYITFCAVPCIHLCILQHLKSNHELNEE
(restricted) Ga0172365_107356843	3300013127	Sediment	MSNLLLITPFVLLHVYLMADFHDSYLWYITFCAVPIVYLCILRHLKLNNELNEEDDTHTF
(restricted) Ga0172363_102634291	3300013130	Sediment	MSNLLLITPFVLLMVFLMADFYDSYLWYITFCAVPIIYLCILRHLKLNNELNEEDDTHTF
(restricted) Ga0172363_105840481	3300013130	Sediment	MSNLLLITPFTLLMVFLMADFHDSYLWYITFCAVPIVYLCILRHLKSNHELNEEDDTYTF
(restricted) Ga0172373_104157532	3300013131	Freshwater	MSNILLITPFVLLMVFLMADFHDSYLWYITFCAVPCIYLCILQHLKLNHQLNEEDDTHTF
(restricted) Ga0172373_106237172	3300013131	Freshwater	ITPFTLLMVFLMADFHDSYLWYITFCAVPIVYLCILRHLKSNHELNEEDDTYTF*
(restricted) Ga0172373_108985602	3300013131	Freshwater	MSNLLLIIPFVLLMVFLMADFHDSYLWYITFCAVPIVYLCILWHLKSNNELNEEDDTYTF
(restricted) Ga0172372_106768423	3300013132	Freshwater	MSNLLLITPFTLLMVFLMADFHDSYLWYITFCAVPIIYLCILRHLKLN
(restricted) Ga0172372_108887303	3300013132	Freshwater	MSNILLITPFVLLMVFLMADFHDSYLWYITFCAVPCIYLCILQHLKLNHQLNEE
(restricted) Ga0172372_108966571	3300013132	Freshwater	MSNLLLITPFVLLMVFLMADFHDSYLWYTTFCAVPIIYLCILRHLKLNNELNEEDDTYTF
(restricted) Ga0172372_109232092	3300013132	Freshwater	MSNLLLIIPFVLLQVYLMADFHDSWLWYTTFCAVPIVYLCILRHLKSNHELNEEDDTYTF
(restricted) Ga0172362_100870428	3300013133	Sediment	MSNLLLITPFTLLMVFLMADFHDSYLWYITFCAVPCIYLCILQHLKSNHELNEEDDTYTF
(restricted) Ga0172362_107910361	3300013133	Sediment	MSNLLLIIPFVLLQVYLMADFHDSWLWYTTFCAVPIIYLCILRHLKLNNELNEEDDTHTF
(restricted) Ga0172375_104174932	3300013137	Freshwater	MSNLLLITPFTLLMVFLMADFHDSYLWYITFCAVPIIYLCILRHLKLNNELNEEDDTYTF
(restricted) Ga0172375_109432882	3300013137	Freshwater	MSNLLLITPFTLLMVFLMADFHDSYLWYTTFCAVPIIYLFILRHLKLNHQLNEEDD
Ga0177922_108242304	3300013372	Freshwater	MSNLLLIIPFLLSMVYMMADFHHSILWYISFCALPVIYLCIFAYLKKTNELNKDDDTYTF
Ga0177922_111126663	3300013372	Freshwater	MSNLLLILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLK
(restricted) Ga0172376_101845864	3300014720	Freshwater	MSNLLLITPFVLLLVFLMADFHDSYLWYITFCAVPIIYLCILRHLKSNHELNEEDDTYTF
(restricted) Ga0172376_106141093	3300014720	Freshwater	MSNLLLITPFVLLQVYLMADFHDSYLWYITFCAVPIIYLCILRHLKLNNELNEEDDTH
(restricted) Ga0172376_106177731	3300014720	Freshwater	MSNLLLITPFVLLMVFLMADFHHSWLWYTTFCAVPIVYLCILRHLKSNHELNEEDDTYTF
Ga0181355_10584197	3300017785	Freshwater Lake	MSNLLFILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKENNELNEEDDTYTF
Ga0181355_12444253	3300017785	Freshwater Lake	MSNLLLILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKHTNELNK
Ga0181355_13353651	3300017785	Freshwater Lake	MANLLLILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKHTNELNK
Ga0181355_13658592	3300017785	Freshwater Lake	MSNLLLILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKNNELNEEDDTYTF
Ga0169931_104794783	3300017788	Freshwater	MSNLLLITPFTLLMVFLMADFHDSYLWYITFCAVPIVYLCILRHLKSNHELNEEDDTHTF
Ga0169931_105712244	3300017788	Freshwater	MSNLLLITPFVLLMVFLMADFHDSYLWYTTFCAVPIIYLCILRHLKLNHQLNEEDD
Ga0169931_105733952	3300017788	Freshwater	MSNLLLITPFVLLMVFLMADFHHSYLWYITFCAVPIIYLCILRHLKLNNELNEEDDTHTF
Ga0181359_10156922	3300019784	Freshwater Lake	MSNLLLILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNQEDDTDTF
Ga0194113_104300264	3300020074	Freshwater Lake	MSNLLLITPFVLLQVYLMADFHDRWWWYATFCAVPVIYLCILQHLKKSHELNEEDDTYTF
Ga0194115_101588203	3300020183	Freshwater Lake	MSNLLLITPFVLLMVLLMADFHDSYLWYITFCAVPCIYLCILRHLKLNNELNEEDDTHTF
Ga0194115_104360292	3300020183	Freshwater Lake	MSNLLLITPFVLLLAFLMADFHDSYLWYITFCAVPCIYLCILQHLKSNNELNEEDDTYTF
Ga0194128_102267034	3300020197	Freshwater Lake	MSNLLLITPFVLLQVYLMADFHDRWWWYATFCAVPVIYLCILQHLKKSHELNEEDDTY
Ga0194121_102871382	3300020200	Freshwater Lake	MSNLLLITLFVLLMVYLMADFHDSYLWYITFCAVPCIYLCILQHLKSNHELNEEDDTHTF
Ga0208721_10154492	3300020518	Freshwater	MSNLLLILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNQEDDTYTF
Ga0208235_10398032	3300020530	Freshwater	MANLLLILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKHTNELNKEDDTYTF
Ga0208599_10034449	3300020554	Freshwater	MANLLLILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNQEDDTYTF
Ga0208465_10072676	3300020570	Freshwater	MSNLLLILPFVLSMVYMIADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNKEDDTYTF
Ga0222714_102221802	3300021961	Estuarine Water	MSNLLLILPFLLSMVYMMADFHHSLLWYISFCALPIIYLCIFAYLKKNNELNEEDDTYTF
Ga0222712_1000117213	3300021963	Estuarine Water	MSNILLLLPSLLSMVYLMADFHHKWWWYLIFCSIPIIYLCILAHLKNTNELNEEDDTYTF
Ga0222712_105649121	3300021963	Estuarine Water	MSNLLLIIPFLLSMVYMMADFHHSLLWYISFCALPVIYLCIFAYLKKTNELNKDDDTYTF
Ga0208546_10061881	3300025585	Aqueous	MSNLLLIIPFLLSMVYMMADFHDRWWWYISFCALPVIYLCIFAYLKKNNELNEEDDTYTF
Ga0208147_10220854	3300025635	Aqueous	MSNLLLITPFTLLMVFLMADFHDSYLWYTTFCAVPIIYLCIFAYLKKNNELNEEDDTYTF
Ga0208147_10269735	3300025635	Aqueous	MSNLLLILPFLLSMVYMMADFHHSLLWYISFLALPIIYLCIFAYLKKNNELNEEDDTYTF
Ga0208147_10573842	3300025635	Aqueous	MSNLLLILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNEEDDTYTF
Ga0208147_11166812	3300025635	Aqueous	MSNLLLITPFVLLMVFLMADFHDSYLWYITFCSVPIIYLCILRHLKQNNELNEEDDTYTF
Ga0208784_10097529	3300025732	Aqueous	MSNLLLIIPFLLSMVYMMADFHHSILWYISFCALPVIYLCIFAYLKKNNELNE
Ga0208005_10276425	3300025848	Aqueous	LLIIPFLLSMVYMMADFHDRWWWYISFCALPVIYLCIFAYLKKNNELNEEDDTYTF
Ga0208005_10923121	3300025848	Aqueous	MSNLLLIIPFLLSMVYMMADFHDRWWWYISFCALPVIYLCIFAYLKKTNEL
Ga0208974_11663071	3300027608	Freshwater Lentic	LPKPILLMANLLLIIPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNQEDDTDTF
Ga0208975_11535341	3300027659	Freshwater Lentic	MSNLLLIIPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKHTNELNEEDDTYTF
Ga0208975_11619681	3300027659	Freshwater Lentic	MANLLLILPFLLSMVYMMADFHDRWWWYISFCALPVIYLCIFAYLKKTNELNEEDDTYTF
Ga0209668_108019372	3300027899	Freshwater Lake Sediment	MANLLLILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNKEDDTDTF
Ga0119944_10026958	3300029930	Aquatic	MANLLLIIPFLLSMVYMMADFHHQWWWYISFCALPIIYLCIFAYLKKNNELNEEDDTYTF
Ga0119945_10074381	3300029933	Aquatic	MANLLLIIPFLLSMVYMMADFHHQWWWYISFCALPIIYLCIFAYLKKNNELNKEDDTYTF
Ga0315907_100588744	3300031758	Freshwater	MSNLLLILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKHTNELDKEDDTYTF
Ga0315907_101704964	3300031758	Freshwater	MSNLLLIIPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKHTNELNKEDDTYTF
Ga0315909_103155833	3300031857	Freshwater	MSNLLLILPFLLSMVYMMVDFHHSLLWYISFCALPIIYLCIFAYLKKNNELNEEDDTYTF
Ga0316621_103965222	3300033488	Soil	MSNLLLILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNEEDDTYTF
Ga0316617_1020215211	3300033557	Soil	MSNLLLILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIF
Ga0334994_0283061_20_202	3300033993	Freshwater	MSNLLLILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNKEDDTDTF
Ga0334979_0116158_1481_1651	3300033996	Freshwater	MANLLLILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNKEDDT
Ga0335002_0012773_1_144	3300034020	Freshwater	MANLLLILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKT
Ga0335004_0329028_715_891	3300034021	Freshwater	MANLLLILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNQEDDTDT
Ga0335004_0623302_1_153	3300034021	Freshwater	VLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNKEDDTDTF
Ga0335010_0694828_1_177	3300034092	Freshwater	NLLLILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNQEDDTYTF
Ga0335027_0391276_2_163	3300034101	Freshwater	LPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKHTNELNEEDDTYTF
Ga0335031_0202359_1183_1341	3300034104	Freshwater	MSNLLLILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNK
Ga0335031_0463696_2_190	3300034104	Freshwater	LPMSNLLLILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKHTNELNKEDDTYTF
Ga0335036_0116402_468_650	3300034106	Freshwater	MANLLLILPFVLSMVYMMADFHDRWWWYISFCALPVIYLCIFAYLKKNNELNEEDDTYTF
Ga0335056_0576737_3_164	3300034120	Freshwater	LPIVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKHTNELNKEDDTYTF
Ga0335039_0481188_2_148	3300034355	Freshwater	MSNLLLILPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKHTN
Ga0335048_0595025_350_511	3300034356	Freshwater	MANLLLILPFVLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNKE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters