Metagenome / Metatranscriptome Family F078297

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F078297
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	52 residues
Representative Sequence	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHN
Number of Associated Samples	89
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.15 %
% of genes near scaffold ends (potentially truncated)	96.55 %
% of genes from short scaffolds (< 2000 bps)	93.97 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (64.655 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (18.965 % of family members)
Environment Ontology (ENVO)	Unclassified (54.310 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (50.862 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.84% β-sheet: 0.00% Coil/Unstructured: 53.16%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF07460	NUMOD3	3.45
PF04466	Terminase_3	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1783	Phage terminase large subunit	Mobilome: prophages, transposons [X]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.21 %
Unclassified	root	N/A	13.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.66 %
Viruses	superkingdom	All Organisms → Viruses	21.55 %
Unclassified	root	N/A	13.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	20.69 %
Unclassified	root	N/A	13.79 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.86 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	62.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	20.69 %
Unclassified	root	N/A	13.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.59 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.86 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	62.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	20.69 %
Unclassified	root	N/A	13.79 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	62.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	20.69 %
Unclassified	root	N/A	13.79 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.86 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.86 %

Name	Rank	Taxonomy	Distribution
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	62.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	20.69 %
Unclassified	root	N/A	13.79 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.86 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	62.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	20.69 %
Unclassified	root	N/A	13.79 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.86 %
Methylobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter	0.86 %

Name	Rank	Taxonomy	Distribution
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	62.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	20.69 %
Unclassified	root	N/A	13.79 %
Methylobacter luteus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → Methylobacter luteus	0.86 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.86 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352004\|2199907017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	717	Open in IMG/M
3300003411\|JGI25911J50253_10157047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	650	Open in IMG/M
3300005527\|Ga0068876_10073159	All Organisms → Viruses → Predicted Viral	2063	Open in IMG/M
3300005528\|Ga0068872_10292683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	905	Open in IMG/M
3300005805\|Ga0079957_1350611	All Organisms → cellular organisms → Bacteria → Proteobacteria	647	Open in IMG/M
3300006920\|Ga0070748_1150332	All Organisms → cellular organisms → Bacteria → Proteobacteria	867	Open in IMG/M
3300007363\|Ga0075458_10286480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	500	Open in IMG/M
3300007544\|Ga0102861_1168661	Not Available	597	Open in IMG/M
3300007972\|Ga0105745_1148462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	717	Open in IMG/M
3300007972\|Ga0105745_1214370	Not Available	609	Open in IMG/M
3300007973\|Ga0105746_1093967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	980	Open in IMG/M
3300007992\|Ga0105748_10324576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	656	Open in IMG/M
3300007992\|Ga0105748_10535274	Not Available	514	Open in IMG/M
3300008106\|Ga0114339_1278498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	515	Open in IMG/M
3300008107\|Ga0114340_1078577	All Organisms → Viruses → Predicted Viral	1368	Open in IMG/M
3300008107\|Ga0114340_1134225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	936	Open in IMG/M
3300008107\|Ga0114340_1211860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	636	Open in IMG/M
3300008110\|Ga0114343_1166091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	683	Open in IMG/M
3300008111\|Ga0114344_1029961	All Organisms → Viruses → Predicted Viral	2839	Open in IMG/M
3300008116\|Ga0114350_1093191	All Organisms → Viruses → Predicted Viral	1561	Open in IMG/M
3300008120\|Ga0114355_1132037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	919	Open in IMG/M
3300008450\|Ga0114880_1049964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → Methylobacter luteus	1772	Open in IMG/M
3300008450\|Ga0114880_1215858	Not Available	629	Open in IMG/M
3300008450\|Ga0114880_1255375	Not Available	543	Open in IMG/M
3300009068\|Ga0114973_10202520	All Organisms → Viruses → Predicted Viral	1084	Open in IMG/M
3300009081\|Ga0105098_10496346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	621	Open in IMG/M
3300009082\|Ga0105099_10461637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	765	Open in IMG/M
3300009085\|Ga0105103_10862754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	529	Open in IMG/M
3300009158\|Ga0114977_10663148	Not Available	558	Open in IMG/M
3300009168\|Ga0105104_10199585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1087	Open in IMG/M
3300009168\|Ga0105104_10904921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	518	Open in IMG/M
3300009169\|Ga0105097_10470648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	701	Open in IMG/M
3300009180\|Ga0114979_10323641	Not Available	912	Open in IMG/M
3300012266\|Ga0136712_1008679	All Organisms → Viruses → Predicted Viral	1081	Open in IMG/M
3300012266\|Ga0136712_1044436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	521	Open in IMG/M
3300012734\|Ga0157615_1118326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	824	Open in IMG/M
3300013004\|Ga0164293_10578672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	732	Open in IMG/M
3300013004\|Ga0164293_10703541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	647	Open in IMG/M
3300013372\|Ga0177922_10639680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	551	Open in IMG/M
3300013372\|Ga0177922_10844877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	918	Open in IMG/M
3300013372\|Ga0177922_10865335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	522	Open in IMG/M
3300017701\|Ga0181364_1075373	Not Available	515	Open in IMG/M
3300017747\|Ga0181352_1062659	All Organisms → Viruses → Predicted Viral	1062	Open in IMG/M
3300017754\|Ga0181344_1225896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	521	Open in IMG/M
3300020048\|Ga0207193_1154042	All Organisms → Viruses → Predicted Viral	1920	Open in IMG/M
3300020172\|Ga0211729_10625616	Not Available	613	Open in IMG/M
3300020205\|Ga0211731_10768841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	786	Open in IMG/M
3300020498\|Ga0208050_1024985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	607	Open in IMG/M
3300020506\|Ga0208091_1001712	All Organisms → Viruses → Predicted Viral	3394	Open in IMG/M
3300020533\|Ga0208364_1043056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	596	Open in IMG/M
3300020549\|Ga0207942_1004343	All Organisms → Viruses → Predicted Viral	2121	Open in IMG/M
3300021961\|Ga0222714_10226098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1064	Open in IMG/M
3300021962\|Ga0222713_10664834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	599	Open in IMG/M
3300021963\|Ga0222712_10148634	All Organisms → Viruses → Predicted Viral	1583	Open in IMG/M
3300022179\|Ga0181353_1046704	All Organisms → Viruses → Predicted Viral	1140	Open in IMG/M
3300022179\|Ga0181353_1162650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	507	Open in IMG/M
3300022190\|Ga0181354_1213767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	567	Open in IMG/M
3300022407\|Ga0181351_1099835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1123	Open in IMG/M
3300022407\|Ga0181351_1113188	All Organisms → Viruses → Predicted Viral	1029	Open in IMG/M
3300022407\|Ga0181351_1275608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	508	Open in IMG/M
3300024514\|Ga0255177_1012343	All Organisms → Viruses → Predicted Viral	1597	Open in IMG/M
3300027160\|Ga0255198_1035635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	912	Open in IMG/M
3300027365\|Ga0209300_1075505	Not Available	506	Open in IMG/M
3300027608\|Ga0208974_1114204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	710	Open in IMG/M
3300027683\|Ga0209392_1195633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	617	Open in IMG/M
3300027693\|Ga0209704_1071473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	968	Open in IMG/M
3300027710\|Ga0209599_10020191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1884	Open in IMG/M
3300027710\|Ga0209599_10151981	Not Available	617	Open in IMG/M
3300027721\|Ga0209492_1121295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	918	Open in IMG/M
3300027732\|Ga0209442_1153191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	886	Open in IMG/M
3300027734\|Ga0209087_1175874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	840	Open in IMG/M
3300027744\|Ga0209355_1266024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	666	Open in IMG/M
3300027772\|Ga0209768_10209063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	871	Open in IMG/M
3300027772\|Ga0209768_10361707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	590	Open in IMG/M
3300027785\|Ga0209246_10214465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	750	Open in IMG/M
3300027785\|Ga0209246_10370809	Not Available	541	Open in IMG/M
3300027793\|Ga0209972_10402428	Not Available	581	Open in IMG/M
3300027804\|Ga0209358_10436319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	610	Open in IMG/M
3300027808\|Ga0209354_10065966	All Organisms → Viruses → Predicted Viral	1465	Open in IMG/M
3300027816\|Ga0209990_10390570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	607	Open in IMG/M
3300027900\|Ga0209253_10779846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	682	Open in IMG/M
3300028025\|Ga0247723_1093873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	767	Open in IMG/M
3300031746\|Ga0315293_10821662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	678	Open in IMG/M
3300031758\|Ga0315907_10301484	All Organisms → Viruses → Predicted Viral	1315	Open in IMG/M
3300031758\|Ga0315907_10853735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	674	Open in IMG/M
3300031857\|Ga0315909_10144764	All Organisms → Viruses → Predicted Viral	1968	Open in IMG/M
3300031857\|Ga0315909_10152962	All Organisms → Viruses → Predicted Viral	1896	Open in IMG/M
3300031857\|Ga0315909_10795989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	598	Open in IMG/M
3300031857\|Ga0315909_10918964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	538	Open in IMG/M
3300031963\|Ga0315901_10670220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	774	Open in IMG/M
3300032050\|Ga0315906_10784025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	750	Open in IMG/M
3300032116\|Ga0315903_10185543	All Organisms → Viruses → Predicted Viral	1865	Open in IMG/M
3300033418\|Ga0316625_101666889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	612	Open in IMG/M
3300033521\|Ga0316616_100675726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1231	Open in IMG/M
3300033557\|Ga0316617_100537572	All Organisms → Viruses → Predicted Viral	1071	Open in IMG/M
3300033993\|Ga0334994_0083069	All Organisms → Viruses → Predicted Viral	1917	Open in IMG/M
3300033993\|Ga0334994_0507162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	559	Open in IMG/M
3300033994\|Ga0334996_0351633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	711	Open in IMG/M
3300034012\|Ga0334986_0088758	All Organisms → Viruses → Predicted Viral	1873	Open in IMG/M
3300034062\|Ga0334995_0718634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	559	Open in IMG/M
3300034066\|Ga0335019_0279479	All Organisms → Viruses → Predicted Viral	1054	Open in IMG/M
3300034092\|Ga0335010_0442681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	698	Open in IMG/M
3300034104\|Ga0335031_0473253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	768	Open in IMG/M
3300034104\|Ga0335031_0710965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	575	Open in IMG/M
3300034106\|Ga0335036_0129454	All Organisms → Viruses → Predicted Viral	1819	Open in IMG/M
3300034106\|Ga0335036_0630917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	645	Open in IMG/M
3300034116\|Ga0335068_0296283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	807	Open in IMG/M
3300034120\|Ga0335056_0438468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	697	Open in IMG/M
3300034120\|Ga0335056_0487222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	651	Open in IMG/M
3300034120\|Ga0335056_0647760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	540	Open in IMG/M
3300034168\|Ga0335061_0152435	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1230	Open in IMG/M
3300034283\|Ga0335007_0760491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	532	Open in IMG/M
3300034283\|Ga0335007_0798008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	93.97%
Terrestrial	Environmental → Terrestrial	6.03%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	84.48%
Marine	Environmental → Aquatic → Marine	9.48%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	3.45%
Soil	Environmental → Terrestrial → Soil	2.59%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	39.66%
Lentic	Environmental → Aquatic → Freshwater → Lentic	25.86%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	9.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.76%
Coastal	Environmental → Aquatic → Marine → Coastal	6.03%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	3.45%
Unclassified	Environmental → Aquatic → Marine → Unclassified	2.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.59%
River	Environmental → Aquatic → Freshwater → River	1.72%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	37.93%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	19.83%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	9.48%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.76%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	6.03%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	5.17%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	3.45%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	2.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.59%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.72%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.72%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.86%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.86%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	18.97%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	18.10%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	7.76%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	7.76%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	6.90%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	5.17%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	5.17%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.31%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	4.31%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.59%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.59%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.59%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	2.59%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	1.72%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.72%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.72%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.86%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.86%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.86%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.86%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.86%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.86%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.86%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352004	Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion	Environmental	Open in IMG/M
3300003411	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental	Open in IMG/M
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300007363	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA	Environmental	Open in IMG/M
3300007544	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3	Environmental	Open in IMG/M
3300007972	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um	Environmental	Open in IMG/M
3300007973	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um	Environmental	Open in IMG/M
3300007992	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um	Environmental	Open in IMG/M
3300008106	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-53-LTR	Environmental	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008110	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA	Environmental	Open in IMG/M
3300008111	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA	Environmental	Open in IMG/M
3300008116	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA	Environmental	Open in IMG/M
3300008120	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300009068	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009158	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009180	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300012266	Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - JTO19cm metaG	Environmental	Open in IMG/M
3300012734	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES144 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017747	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N	Environmental	Open in IMG/M
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental	Open in IMG/M
3300020205	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1	Environmental	Open in IMG/M
3300020498	Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020506	Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020533	Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020549	Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300021140	Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental	Open in IMG/M
3300022179	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N	Environmental	Open in IMG/M
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental	Open in IMG/M
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental	Open in IMG/M
3300024514	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepB_8d	Environmental	Open in IMG/M
3300027160	Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepC_8h	Environmental	Open in IMG/M
3300027365	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)	Environmental	Open in IMG/M
3300027608	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)	Environmental	Open in IMG/M
3300027683	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027693	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027710	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)	Environmental	Open in IMG/M
3300027721	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027732	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)	Environmental	Open in IMG/M
3300027734	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027744	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)	Environmental	Open in IMG/M
3300027772	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)	Environmental	Open in IMG/M
3300027782	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027785	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027793	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)	Environmental	Open in IMG/M
3300027804	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)	Environmental	Open in IMG/M
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental	Open in IMG/M
3300027816	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental	Open in IMG/M
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental	Open in IMG/M
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300032050	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122	Environmental	Open in IMG/M
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental	Open in IMG/M
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental	Open in IMG/M
3300034012	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027	Environmental	Open in IMG/M
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental	Open in IMG/M
3300034066	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087	Environmental	Open in IMG/M
3300034092	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069	Environmental	Open in IMG/M
3300034104	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M
3300034116	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR	Environmental	Open in IMG/M
3300034120	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172	Environmental	Open in IMG/M
3300034168	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183	Environmental	Open in IMG/M
3300034283	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2200087425	2199352004	Freshwater	MADKSLEEVKRGEQATQILDNPLYKEAMDKVRESLIASMANSPLGDEK
JGI25911J50253_101570471	3300003411	Freshwater Lake	MADKSLEEVKRGEQATQILDNPIYKEAIDKVRESLISSMANSP
Ga0068876_100731591	3300005527	Freshwater Lake	MADKSLEEVKRGEQAAQILDNPIYKEAIEKVKENIVSTMANSPLNDEKTHNRLVIALQ
Ga0068872_102926833	3300005528	Freshwater Lake	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSP
Ga0079957_13506112	3300005805	Lake	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHN
Ga0070748_11503321	3300006920	Aqueous	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLISSMANSPLGDEKTHNKLVIALQLLNQI
Ga0075458_102864801	3300007363	Aqueous	MADKSLEEVKRGEQAAVVLDNPLFKEAMAKVKENIVNTMATSPLGD
Ga0102861_11686613	3300007544	Estuarine	MADKSLEEVKRGEQAAQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNRLVIALQL
Ga0105745_11484622	3300007972	Estuary Water	MADKQLSEIKLGAQAQQILDNPVYKDAIERVRENIVSSMTNSPIGDEKTHNRLVIALQLLNQ
Ga0105745_12143702	3300007972	Estuary Water	MADKSLEEVKRGEQAAQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNRLVIALQLLNQINKQLTDVM
Ga0105746_10939672	3300007973	Estuary Water	MADKQLSEIKLGEQAAKILENPVYQDAIAKVRENIVASMTTSPLGDEKTHNKLVIALQLLNQINKQLTDVMQ
Ga0105748_103245762	3300007992	Estuary Water	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQLLNQINKQL
Ga0105748_105352741	3300007992	Estuary Water	MADKSLEEVKRGEQAAQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNR
Ga0114339_12784982	3300008106	Freshwater, Plankton	MADKSLEEVKRGEQATQILDNPLYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQLLNQINKQLT
Ga0114340_10785772	3300008107	Freshwater, Plankton	MATKQLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANS
Ga0114340_11342252	3300008107	Freshwater, Plankton	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASM
Ga0114340_12118601	3300008107	Freshwater, Plankton	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANS
Ga0114343_11660911	3300008110	Freshwater, Plankton	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLISSMANSPLGDEKTHNKLVIALQ
Ga0114344_10299613	3300008111	Freshwater, Plankton	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKL
Ga0114350_10931912	3300008116	Freshwater, Plankton	MADKSLEEIKRGEQAAVILDNPVYQEAIAKVRENIVASMTTSPLGDEKSANAKRNLDVFLFR*
Ga0114355_11320372	3300008120	Freshwater, Plankton	MADKSLEEIKRGEQAAVILDNPVYQEAIAKVRENIVASMTTSPLGDEKTHNRLV
Ga0114880_10499643	3300008450	Freshwater Lake	MADKSLEEIKRGEQAAVILDNPVYQEAIAKVRENIVAS
Ga0114880_12158582	3300008450	Freshwater Lake	MADKSLEEIKRGEQAAVVLDNPLYKEAIEKVKEGIIVSMSTSPMGDEKTHNRLV
Ga0114880_12553752	3300008450	Freshwater Lake	MVDKSLEEVKRGEQAAVILENPLYQEAIKKVKDGIIVSMSTSPMGDEKTHNRLVIALQILHQIDKQLT
Ga0114973_102025202	3300009068	Freshwater Lake	MATKQLSEIKLGEQAAQILDNPVYQDAIAKVRENIVSSMTNSPLGDEKTHNRLVIALQLLNQINK
Ga0105098_104963461	3300009081	Freshwater Sediment	MATKQLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANS
Ga0105099_104616371	3300009082	Freshwater Sediment	MDKQLTEVKRGEQASQVLDNPLFQESVDKVREGIIRSMATSPLGDSETHNRLVIAMQLLNQIEKQ
Ga0105103_108627541	3300009085	Freshwater Sediment	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGD
Ga0114977_106631483	3300009158	Freshwater Lake	LAKPLEEIKLGEQAAQVLDNPVYKDAIERVRENIVNSMTNSPIGDEKTHN
Ga0105104_101995851	3300009168	Freshwater Sediment	MADKSLEEAKRGEQATQILDNPLYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQLLNQ
Ga0105104_109049212	3300009168	Freshwater Sediment	MADKQLSEIKLGEQAAKILENPVYQDAIAKVRENIVASMTTSPLGDEKTHNKLVIALQLL
Ga0105097_104706482	3300009169	Freshwater Sediment	MATKQLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLGDEKIHNKLVIALQLLNQINKQLTD
Ga0114979_103236411	3300009180	Freshwater Lake	MVDKSLEEVKRGEQASQILENPIYLEAITKVRENIVTSMTASPLGD
Ga0114974_105103121	3300009183	Freshwater Lake	LSKQLEEIKLGEQAAQILENPVYKDAIDRVRENIVSSMTASPLGDEKTH
Ga0136712_10086792	3300012266	Freshwater	MADKSLEEVKRGEQATQILDNPLYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQLLNQIN
Ga0136712_10444361	3300012266	Freshwater	MADKSLQEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPL
Ga0157615_11183262	3300012734	Freshwater	MADKSLEEVKRGEQATQILDNPLYKEAMDKVRESLIASMANSPLGDEKTHNKLV
Ga0164293_105786721	3300013004	Freshwater	MATKQLEEVKLGEQAAQILDNPVYKDAIERVRENIVNSMT
Ga0164293_107035411	3300013004	Freshwater	MADKSLQEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDEK
Ga0177922_106396802	3300013372	Freshwater	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLV
Ga0177922_108448771	3300013372	Freshwater	MADKSLEEVKRGEQASKILDNPIYKEAIDKVRESLISSMANSPLGDEK
Ga0177922_108653351	3300013372	Freshwater	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQLLNQINKQLTD
Ga0181364_10753731	3300017701	Freshwater Lake	MDKSLSEIKLGAQAQQILDNPVYKDAIERVRENIVSSMTNSAIGDEKTHNRL
Ga0181352_10626593	3300017747	Freshwater Lake	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLIAS
Ga0181344_12258962	3300017754	Freshwater Lake	MADKSLEEVKRGEQASQILDNPLYKEAMDKVRESLIASMANS
Ga0207193_11540421	3300020048	Freshwater Lake Sediment	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLGDEK
Ga0211729_106256162	3300020172	Freshwater	MDKSLEEVKRGEQASQILDNPIYKEALDKVRESLIASMANSPLGDEKTHNKLVIALQLL
Ga0211731_107688411	3300020205	Freshwater	MADKSLEEVKRGEQASQILDNPIYKEALDKVRESLIASMANSPLGDEKTHNKLVIALQLLNQ
Ga0208050_10249851	3300020498	Freshwater	MADKSLQEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQLLNQINKQLTDVMH
Ga0208091_10017123	3300020506	Freshwater	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSP
Ga0208364_10430561	3300020533	Freshwater	MADKSLEEVKRGEQASQILDNPLYKEAMDKVRESLIASMANSPLGDEKTH
Ga0207942_10043432	3300020549	Freshwater	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQLLNQINK
Ga0214168_10865962	3300021140	Freshwater	MAKQLEEIKLGEQAAQILENPVYIDAIAKVRENIVSSMTAS
Ga0222714_102260983	3300021961	Estuarine Water	MADKSLEEVKRGEQAAQILDNPIYKEAMDKVRESLISSMANSPLGDEKTHN
Ga0222713_106648341	3300021962	Estuarine Water	MDKSLEEVKRGEQAAQILDNPIYKEAMDKVRESLISSMANSPLG
Ga0222712_101486341	3300021963	Estuarine Water	MVDKSLEEVKRGEQAAQILDNPIYKEAMDKVRESLISSMANSPLGDEKTHNRLVI
Ga0181353_10467041	3300022179	Freshwater Lake	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQLLNQ
Ga0181353_11626501	3300022179	Freshwater Lake	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLGDE
Ga0181354_12137671	3300022190	Freshwater Lake	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNRLVIA
Ga0181351_10998351	3300022407	Freshwater Lake	MADKSLEEVKRGEQAAVILDNPVYKEAISKVRENIVNTMTTSPLGDEKTHNRLVIALQLLNQIDKQLTDVMN
Ga0181351_11131881	3300022407	Freshwater Lake	MADKSLEEVKRGEQATQILDNPLYKEAMDKVRESLISS
Ga0181351_12756082	3300022407	Freshwater Lake	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLG
Ga0255177_10123432	3300024514	Freshwater	MADKSLEEVKRGEQAAVILDNPIYQEAIAKVKENIVSTMANS
Ga0255198_10356351	3300027160	Freshwater	MADKSLEEIKRGEQAAVILDNPVYQEAIAKVRENIVASMTTSPLGDEKTHNRLVIALQLLNQ
Ga0209300_10755052	3300027365	Deep Subsurface	MADKSLQEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQLLNQINKQLTDVMH
Ga0208974_11142042	3300027608	Freshwater Lentic	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIAS
Ga0209392_11956332	3300027683	Freshwater Sediment	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLISSMANSPLGDE
Ga0209704_10714732	3300027693	Freshwater Sediment	MATKQLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQL
Ga0209599_100201913	3300027710	Deep Subsurface	MADKSLEEVKRGEQAAVILDNPVYKEAISKVRENIVNTMTTS
Ga0209599_101519813	3300027710	Deep Subsurface	MDKNWITMADKSLEEVKRGEQAAVILDNPVYKEAISKVRENIVNTMTTSPLG
Ga0209492_11212952	3300027721	Freshwater Sediment	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDE
Ga0209442_11531912	3300027732	Freshwater Lake	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANS
Ga0209087_11758742	3300027734	Freshwater Lake	MADKSLEEVKRGEQAAQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNRLVIALQLL
Ga0209355_12660241	3300027744	Freshwater Lake	MDKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLGDEKT
Ga0209768_102090631	3300027772	Freshwater Lake	MDKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMA
Ga0209768_103617072	3300027772	Freshwater Lake	MADKSLEEVKRGEQATQILDNPLYKEAMDKVRESLIASMANSPLGDEKTHNKLVIA
Ga0209500_101836233	3300027782	Freshwater Lake	MAKQLEEIKLGEQAAQILENPVYKDAIERVRENIVNSMTNSAIGDEKTHNRLVIALQLLNQI
Ga0209246_102144651	3300027785	Freshwater Lake	MADKSLEEVKRGEQATQILDNPLYKEAMDKVRESL
Ga0209246_103708091	3300027785	Freshwater Lake	MDKSLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQLLNQI
Ga0209972_104024283	3300027793	Freshwater Lake	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPL
Ga0209358_104363192	3300027804	Freshwater Lake	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIA
Ga0209354_100659662	3300027808	Freshwater Lake	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMAN
Ga0209990_103905702	3300027816	Freshwater Lake	MATKQLEEVKRGEQASQILDNPIYKEAMDKVRESLIA
Ga0209253_107798462	3300027900	Freshwater Lake Sediment	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVI
Ga0247723_10938731	3300028025	Deep Subsurface Sediment	MADKSLQEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQLLNQINK
Ga0315293_108216621	3300031746	Sediment	MADKQLSEIKLGAQAQQILDNPVYKDAIERVRENIVSSMTNSPIGDEKTHNRLVIALQLLNQINKQLTD
Ga0315907_103014841	3300031758	Freshwater	MADKSLEEVKRGEQAAQILDNPIYKEAIDKVRENIVASMTNSPLG
Ga0315907_108537352	3300031758	Freshwater	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQ
Ga0315909_101447641	3300031857	Freshwater	MATKQLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVIAL
Ga0315909_101529621	3300031857	Freshwater	MADKSLEEIKRGEQAAVILDNPVYQEAIAKVRENIVASMTTS
Ga0315909_107959891	3300031857	Freshwater	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQLL
Ga0315909_109189642	3300031857	Freshwater	MADKSLEEVKRGEQAAVILDNPIYKEAMDKVRESIVSSMTNSPLGDEKTHNRLV
Ga0315901_106702201	3300031963	Freshwater	MDKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSP
Ga0315906_107840252	3300032050	Freshwater	MADKSLEEVKRGEQASQILDNPLYKEAMDKVRESLIASMANSPLGDEKTHNKLV
Ga0315903_101855431	3300032116	Freshwater	MATKQLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDE
Ga0316625_1016668892	3300033418	Soil	MADKSLEEVKRGEQAAVVLDNPLFKEAMAKVKDNIVNTMASSPLGDEKTHNRLV
Ga0316616_1006757261	3300033521	Soil	MADKSLEEIKRGEQAAVILDNPVYQEAIAKVRENIVASMTTSALGDEKTHNRLVIALQLLNQINKQLTDV
Ga0316617_1005375722	3300033557	Soil	MDKSLEEVKRGEQASVVLDNPLFKEAMAKVKENIVNTMATSPLGDEKTHNRLVIALQLLNQIEKQLTDV
Ga0334994_0083069_1794_1916	3300033993	Freshwater	MADKSLEEVKRGEQATQILDNPLYKEAMDKVRESLIASMAN
Ga0334994_0507162_3_125	3300033993	Freshwater	MATKQLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMAN
Ga0334996_0351633_534_710	3300033994	Freshwater	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQL
Ga0334986_0088758_1_159	3300034012	Freshwater	MADKSLEEVKRGEQASQILDNPLYKEAMDKVKESLIASMANSPLGDEKTHNKL
Ga0334995_0718634_348_557	3300034062	Freshwater	MATKQLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQLLNQINKQLTDV
Ga0335019_0279479_1_147	3300034066	Freshwater	MADKSLQEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDEKT
Ga0335010_0442681_3_146	3300034092	Freshwater	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDEK
Ga0335031_0473253_645_767	3300034104	Freshwater	MDKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANS
Ga0335031_0710965_2_136	3300034104	Freshwater	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLG
Ga0335036_0129454_1693_1818	3300034106	Freshwater	MADKSLEEVKRGEQATQILDNPLYKEAMDKVRESLIASMANS
Ga0335036_0630917_480_644	3300034106	Freshwater	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVI
Ga0335068_0296283_3_110	3300034116	Freshwater	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLI
Ga0335056_0438468_526_696	3300034120	Freshwater	MADKSLEEVKRGEQASQILDNPIYKEAMDKVRESLISSMANSPLGDEKTHNKLVIAL
Ga0335056_0487222_502_651	3300034120	Freshwater	MATKQLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDEKTH
Ga0335056_0647760_1_204	3300034120	Freshwater	MATKQLEEVKRGEQASQILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQLLNQINKQLT
Ga0335061_0152435_1_201	3300034168	Freshwater	MAKQLEEIKLGEQAAQILENPVYIDAIAKVRENIVSSMTASPLGDEKTHNRLVIALQLLNQINKQLT
Ga0335007_0760491_2_175	3300034283	Freshwater	MADKSLEEVKRGEQATQILDNPLYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQ
Ga0335007_0798008_408_512	3300034283	Freshwater	MADKSLEEVKRGEQATQILDNPIYKEAMDKVRESL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078297

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences