Metagenome Family F078202

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F078202
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	58 residues
Representative Sequence	MNQTKQRGGKRIGAGRKPGVKKARNKIARSITLHRDTWQMIESKRGEKSPSKYIESKL
Number of Associated Samples	51
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	44
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (62.069 % of family members)
Environment Ontology (ENVO)	Unclassified (87.931 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (93.966 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88. 1JGI25908J49247_100160628 2JGI25908J49247_100274183 3JGI25908J49247_100608021 4JGI25908J49247_100665684 5JGI25908J49247_101326852 6JGI25909J50240_10150142 7JGI25909J50240_10542592 8JGI25909J50240_10898982 9JGI25907J50239_10796231 10JGI25907J50239_10942443 11Ga0114880_100637010 12Ga0114880_10075627 13Ga0114880_10410946 14Ga0114980_100006248 15Ga0114980_101277032 16Ga0114968_100708707 17Ga0114968_100958197 18Ga0114968_100973316 19Ga0114981_102676101 20Ga0114975_103144551 21Ga0114975_103941133 22Ga0114969_101489354 23Ga0114969_103804771 24Ga0114976_101647973 25Ga0133913_104482584 26Ga0139557_10073013 27Ga0139557_10114303 28Ga0139556_10118124 29Ga0139556_10332142 30Ga0139556_10743523 31Ga0153801_10493871 32Ga0177922_101114522 33Ga0177922_111050711 34Ga0177922_111092853 35Ga0177922_113077814 36Ga0181364_10230023 37Ga0181350_10399801 38Ga0181350_10434174 39Ga0181350_10606034 40Ga0181347_10238231 41Ga0181347_10642902 42Ga0181347_11071772 43Ga0181347_11771252 44Ga0181362_10667422 45Ga0181362_11086092 46Ga0181365_10223935 47Ga0181365_10227453 48Ga0181365_11026621 49Ga0181356_10680602 50Ga0181343_11123962 51Ga0181358_10938524 52Ga0181357_10261915 53Ga0181357_10374711 54Ga0181357_10545845 55Ga0181357_10608681 56Ga0181357_10714631 57Ga0181357_10738244 58Ga0181357_11215144 59Ga0181357_11262041 60Ga0181357_11333241 61Ga0181357_11566212 62Ga0181357_12442351 63Ga0181357_12451083 64Ga0181357_12889001 65Ga0181357_12971663 66Ga0181357_13001752 67Ga0181349_12709901 68Ga0181349_13035262 69Ga0181346_10331561 70Ga0181346_10693503 71Ga0181348_11549523 72Ga0181348_11993241 73Ga0181348_12415213 74Ga0181348_13267361 75Ga0181355_10761344 76Ga0181355_12363481 77Ga0181355_12407683 78Ga0181355_13323512 79Ga0181355_13834611 80Ga0181359_10024307 81Ga0181359_10079422 82Ga0181359_10362113 83Ga0181359_10437846 84Ga0181359_10452283 85Ga0181359_10482792 86Ga0181359_10911213 87Ga0181359_11938091 88Ga0181359_11939201 89Ga0181359_12574942 90Ga0181354_10187912 91Ga0181354_11787872 92Ga0181351_10406824 93Ga0181351_10558041 94Ga0214917_102352433 95Ga0214923_101277074 96Ga0214923_102565253 97Ga0209297_10984723 98Ga0209087_101758410 99Ga0209190_100155029 100Ga0209596_101292911 101Ga0209296_10882125 102Ga0209500_103838771 103Ga0209246_100335803 104Ga0209246_102229382 105Ga0209353_100306441 106Ga0209354_100467786 107Ga0209400_11434904 108Ga0209298_1000151625 109Ga0304730_10618024 110Ga0315291_110725731 111Ga0315288_106626911 112Ga0315909_1000358116 113Ga0315274_101382135 114Ga0315274_103818641 115Ga0315284_112477891 116Ga0315905_102274163
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel
Powered by MSAViewer

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.72% β-sheet: 0.00% Coil/Unstructured: 48.28%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF09588	YqaJ	6.90
PF12850	Metallophos_2	6.03
PF04404	ERF	4.31
PF03837	RecT	3.45
PF11325	DUF3127	1.72
PF00535	Glycos_transf_2	0.86
PF01695	IstB_IS21	0.86
PF12684	DUF3799	0.86
PF14279	HNH_5	0.86
PF07120	DUF1376	0.86

Showing 1 to 10 of 10 entries

Previous1Next

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG3723	Recombinational DNA repair protein RecT	Replication, recombination and repair [L]	3.45
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.86
COG3756	Uncharacterized conserved protein YdaU, DUF1376 family	Function unknown [S]	0.86

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
No data available in table

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	100.00%

Habitat	Taxonomy	Distribution
Ice	Environmental → Aquatic → Freshwater → Ice	1.72%
Lake	Environmental → Aquatic → Freshwater → Lake	34.48%
Lentic	Environmental → Aquatic → Freshwater → Lentic	62.07%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	1.72%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.31%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	62.07%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	30.17%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.72%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.90%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.59%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	1.72%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	1.72%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	62.07%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	18.10%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.59%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	4.31%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M
3300003394	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental	Open in IMG/M
3300009155	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG	Environmental	Open in IMG/M
3300009160	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG	Environmental	Open in IMG/M
3300009164	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG	Environmental	Open in IMG/M
3300009181	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG	Environmental	Open in IMG/M
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental	Open in IMG/M

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25908J49247_100160628	3300003277	Freshwater Lake	CNAHNFTKMNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRGEKSPSKYIESKL*
JGI25908J49247_100274183	3300003277	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIENKRGGLTPSKYIEKLLQ*
JGI25908J49247_100608021	3300003277	Freshwater Lake	MGKIITMNQTKQRGGKRIGAGRKPGVKKARNKIARSITLHRDTWQMIESKRGEKSPSKYIESKL*
JGI25908J49247_100665684	3300003277	Freshwater Lake	MNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRGEKSPSKYIESKL*
JGI25908J49247_101326852	3300003277	Freshwater Lake	TTMDQNKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRGEKSPSKYIESKL
JGI25909J50240_10150142	3300003393	Freshwater Lake	MNQXKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRGEKSPSKYIESKL*
JGI25909J50240_10542592	3300003393	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIEKLLQ*
JGI25909J50240_10898982	3300003393	Freshwater Lake	MGKIITMNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIESKRGEKSPSKYIESKL*
JGI25907J50239_10796231	3300003394	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPS
JGI25907J50239_10942443	3300003394	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTP
Ga0114880_100637010	3300008450	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGILTPSKYIEKLLQ*
Ga0114880_10075627	3300008450	Freshwater Lake	MTKQGRDCNAHNFTKMNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIEKLLQ*
Ga0114880_10410946	3300008450	Freshwater Lake	MTKQGRGCNAHNHTMNQTKQRGGKRIGAGRKPGVKKARNKIARSITLHRDTWQMIESKRGEKSPSKYIESKL*
Ga0114980_100006248	3300009152	Freshwater Lake	MNQKQRGGKRIGSGRKPGIKKARNKIARSITLHRDTWAKIERKRGEKSPSKFIESKL*
Ga0114980_101277032	3300009152	Freshwater Lake	MNQTKQRGGKRIGAGRKPGVKKARNKIARSITLHRDTWQMIEKKRGEKSPSKYIESKL*
Ga0114968_100708707	3300009155	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSITLHRDTWAKIERKRGEKSPSKFIESKL*
Ga0114968_100958197	3300009155	Freshwater Lake	MNQIKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWAKIESKRGEKSPSKFIESKL*
Ga0114968_100973316	3300009155	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNRIARSITLHRDTWAKIERKRGEKSPSKFIESKL*
Ga0114981_102676101	3300009160	Freshwater Lake	METTINQMKATRGGKRIGSGRKPGVKKARNKIARSITLHRDTWQMIEKKRGEKSPSKYIESKL*
Ga0114975_103144551	3300009164	Freshwater Lake	RGGKRIGSGRKPGIKKARNKIARSITLHRDTWAKIERKRGEKSPSKFIESKL*
Ga0114975_103941133	3300009164	Freshwater Lake	MNQKQRGGKRIGSGRKPGVKKARNKIARSITLHRD
Ga0114969_101489354	3300009181	Freshwater Lake	MNQKQRGGKRIGSGRKPGIKKARNKIARSITLHRDTWQMIE
Ga0114969_103804771	3300009181	Freshwater Lake	KQRGGKRIGSGRKPGIKKARNKIARSITLHRDTWAKIESKRGEKSPSKFIESKL*
Ga0114976_101647973	3300009184	Freshwater Lake	MKATRGGKRIGSGRKPGVKKARNKIARSITLHRDTWQMIEKKRGEKSPSKYIESKL*
Ga0133913_104482584	3300010885	Freshwater Lake	MNQKQRGGKRIGSGRKPGIKKARNKIARSITLHRDTWQMIEKKRGEKSPSKFIESKL*
Ga0139557_10073013	3300011010	Freshwater	MVIYFMKKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIESKLQ*
Ga0139557_10114303	3300011010	Freshwater	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIEQILQ*
Ga0139556_10118124	3300011011	Freshwater	MVIYFMKKQRGGKRIGSGRKPGIKKARNKIARSIILH
Ga0139556_10332142	3300011011	Freshwater	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIESKLQ*
Ga0139556_10743523	3300011011	Freshwater	MNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRKELSPSKFIEMKIK*
Ga0153801_10493871	3300012017	Freshwater	MVIYFMKKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIEQILQ*
Ga0177922_101114522	3300013372	Freshwater	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLT
Ga0177922_111050711	3300013372	Freshwater	MVIYFMKKQRGGKRIGSGRKPGIKKARNKIARSITFHRDTWAQIETKRGGLTPSKYIEKLLQ*
Ga0177922_111092853	3300013372	Freshwater	MNQTKQRGGKRIGSGRKPGIKKARNKIARSITFHRDTWARIETKRGGLTPSKYIEKLLS*
Ga0177922_113077814	3300013372	Freshwater	MNQKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKR
Ga0181364_10230023	3300017701	Freshwater Lake	MTKQGRGCNAHNFITMNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIESKRGEKSPSKYIESKL
Ga0181350_10399801	3300017716	Freshwater Lake	TMNQTKQRGGKRIGAGRKPGVKKARNKIARSITLHRDTWQMIESKRGEKSPSKYIESKL
Ga0181350_10434174	3300017716	Freshwater Lake	MGKIITMNQTKQRGGKRIGAGRKPGIKKARNKIARSITLHRDTWQMIESKRGEKSPSKYIESKL
Ga0181350_10606034	3300017716	Freshwater Lake	MKPTRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIESKRGEKSPSKYIESKL
Ga0181347_10238231	3300017722	Freshwater Lake	KSEVIMGKIITMNQTKQRGGKRIGAGRKPGIKKARNKIARSITLHRDTWQMIESKRGEKSPSKYIESKL
Ga0181347_10642902	3300017722	Freshwater Lake	MNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIESKRGEKSPSKYIESKL
Ga0181347_11071772	3300017722	Freshwater Lake	CKKSEVIMGKIITMNQTKQRGGKRIGAGRKPGIKKARNRIARSITLHRDTWQMIEKKRGEKSPSKYIESKL
Ga0181347_11771252	3300017722	Freshwater Lake	LQRAIFTTMNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRGEKSPSKYIESKL
Ga0181362_10667422	3300017723	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGSLTPSKYIEKLLQ
Ga0181362_11086092	3300017723	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSITFHRDTWAQIETKRGGLTPSKYIEKLLQ
Ga0181365_10223935	3300017736	Freshwater Lake	MNQNKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRGEKSPSKYIESKL
Ga0181365_10227453	3300017736	Freshwater Lake	MTKTGARLQRAIFTTMNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIERKRKELSPSKYIESKL
Ga0181365_11026621	3300017736	Freshwater Lake	MGKIITMNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIESK
Ga0181356_10680602	3300017761	Freshwater Lake	MTKQGRGCNAHNHTMNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRGEKSPSKYIESKL
Ga0181343_11123962	3300017766	Freshwater Lake	MTKQGRDCNAHNFTKMNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIEKLLQ
Ga0181358_10938524	3300017774	Freshwater Lake	MKPTRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIESKRGEKS
Ga0181357_10261915	3300017777	Freshwater Lake	MNQKQRGGKRIGAGRKPGVKKARNKIARSITLHRDTWQMIERKRKELSPSKFIEMKIK
Ga0181357_10374711	3300017777	Freshwater Lake	KQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRGEKSPSKYIESKL
Ga0181357_10545845	3300017777	Freshwater Lake	MKQTKQRGGKRIGAGRKLGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIEQILQ
Ga0181357_10608681	3300017777	Freshwater Lake	MVIYFMKSTRGGKREGAGRKPGIKKARNKIARSITFHRDTWAKIETKRGGLTPSKYIESKLQ
Ga0181357_10714631	3300017777	Freshwater Lake	SKVIMGKIITMNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIESKRGEKSPSKYIESKL
Ga0181357_10738244	3300017777	Freshwater Lake	MNQTKQRGGKRIGAGRKPGVKKTRNRIARSITLHRDTWQMIEKKRKELSPSKFIEMKIK
Ga0181357_11215144	3300017777	Freshwater Lake	CNAHNFTKMNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRGEKSPSKYIESKL
Ga0181357_11262041	3300017777	Freshwater Lake	TGARLQRAIFTTMNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIERKRKELSPSKYIESKL
Ga0181357_11333241	3300017777	Freshwater Lake	KRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIEKLLQ
Ga0181357_11566212	3300017777	Freshwater Lake	MNQTKQRGGNRIGAQRKTGVKKARNKIARSITLHRHTWQMIESKRGEKSPSKYIESKL
Ga0181357_12442351	3300017777	Freshwater Lake	MNQTKQRGGKRSGSGRKPGIKKARNKIARSITFHRDTWARIETK
Ga0181357_12451083	3300017777	Freshwater Lake	MKQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLT
Ga0181357_12889001	3300017777	Freshwater Lake	MTMNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIESKL
Ga0181357_12971663	3300017777	Freshwater Lake	MKKQRGGKRIGAGRKPGVKKARNKIARSITLHRDTWQMIESKRGE
Ga0181357_13001752	3300017777	Freshwater Lake	MKPTRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIEQILQ
Ga0181349_12709901	3300017778	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQI
Ga0181349_13035262	3300017778	Freshwater Lake	MGKIITMNQTKQRGGKRIGAGRKPGIKKARNRIARSITLHRDTWQMIESKRGEKSPSKYIESKL
Ga0181346_10331561	3300017780	Freshwater Lake	RGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIESKLQ
Ga0181346_10693503	3300017780	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIE
Ga0181348_11549523	3300017784	Freshwater Lake	MGKIITMNQTKQRGGKRIGAGRKPGVKKARNRIARSIT
Ga0181348_11993241	3300017784	Freshwater Lake	MNQTKQRGGKRIGAGRKPGIKKARNRIARSITLHRDTWQMI
Ga0181348_12415213	3300017784	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSITFHRDTWAQIETKRGGLTPSKYIEKLLS
Ga0181348_13267361	3300017784	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSITFHRDTWAKIETKRGGLTPSNYIEKLLQ
Ga0181355_10761344	3300017785	Freshwater Lake	MNQTKQRGGKRIGAGRKPGVKKARNKIARSITLHRDTWQMIERKRKELSPSKFIESKL
Ga0181355_12363481	3300017785	Freshwater Lake	MKKQRGGKRIGAGRKPGVKKARNKIARSITLHRDTWQMIDSKRGEKSPSKYIE
Ga0181355_12407683	3300017785	Freshwater Lake	GKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRKELSPSKFIEMKIK
Ga0181355_13323512	3300017785	Freshwater Lake	MNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIESKR
Ga0181355_13834611	3300017785	Freshwater Lake	MKQTKQRGGKRIGAGRKLGIKKARNKIARSIILHRLTWEQIETKRGSLTPSKYIEKLLQ
Ga0181359_10024307	3300019784	Freshwater Lake	MNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRGEKSPSKYIESKL
Ga0181359_10079422	3300019784	Freshwater Lake	MTKTGARLQRAIFTTMDQNKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRGEKSPSKYIESKL
Ga0181359_10362113	3300019784	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIENKRGGLTPSKYIEKLLQ
Ga0181359_10437846	3300019784	Freshwater Lake	MGKIITMNQTKQRGGKRIGAGRKPGVKKARNKIARSITLHRDTWQMIESKRGEKSPSKYIESKL
Ga0181359_10452283	3300019784	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSITFHRDTWARIETKRGGLTPSKYIEQILQ
Ga0181359_10482792	3300019784	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIEQILK
Ga0181359_10911213	3300019784	Freshwater Lake	MNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRKELSPSKFIEMKIKXKHTSNN
Ga0181359_11938091	3300019784	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIESKL
Ga0181359_11939201	3300019784	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGG
Ga0181359_12574942	3300019784	Freshwater Lake	MGKIITMNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIESKRGEKSPSKYIESKL
Ga0181354_10187912	3300022190	Freshwater Lake	MGKIITMNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIESKLQ
Ga0181354_11787872	3300022190	Freshwater Lake	MTKQGRGCNAHNFITMNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRGEKSPSKYIESKL
Ga0181351_10406824	3300022407	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTW
Ga0181351_10558041	3300022407	Freshwater Lake	NAHNFITMNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRGEKSPSKYIESKL
Ga0214917_102352433	3300022752	Freshwater	MNQIKQRGGKRIGAGRKPGIKKARNKIARSIILHRDTWAKIERMRGEKSPSKFIESKL
Ga0214923_101277074	3300023179	Freshwater	MNQIKQRGGKRIGSGRKPGVKKARNKIARSIILHRDTWAKIESKRGENSPSKYIESKL
Ga0214923_102565253	3300023179	Freshwater	MNQTKQRGGKRIGAGRKPGIKKARNKIARSIILHRDTWAKIERMRGEKSPSKFIESKL
Ga0209297_10984723	3300027733	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIEKLLQ
Ga0209087_101758410	3300027734	Freshwater Lake	MGKIITMKQKQRGGKRIGSGRKPGVKKARNKIARSITLHRDTWQMIESKRGEKSPSKFIESKL
Ga0209190_100155029	3300027736	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNRIARSITLHRDTWAKIERKRGEKSPSKFIESKL
Ga0209596_101292911	3300027754	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSITLHRDTWAKIERKRGEKSPSKFIESKL
Ga0209296_10882125	3300027759	Freshwater Lake	NAHNFTTMNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIEKLLQ
Ga0209500_103838771	3300027782	Freshwater Lake	MGKIIRMNQTKQRGGKRIGSGRKPGVKKARNKIARSITLHRDTWQMIESKRG
Ga0209246_100335803	3300027785	Freshwater Lake	MKPTRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIEQILK
Ga0209246_102229382	3300027785	Freshwater Lake	DNHTMNQTKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWQMIEKKRGEKSPSKYIESKL
Ga0209353_100306441	3300027798	Freshwater Lake	CKKSEVIMGKIITMNQTKQRGGKRIGAGRKPGVKKARNKIARSITLHRDTWQMIESKRGEKSPSKYIESKL
Ga0209354_100467786	3300027808	Freshwater Lake	MNQTKQRGGKRIGAGRKPGVKKARNKIARSITLHRDTWQMIESKRGEKSPSKYIESKL
Ga0209400_11434904	3300027963	Freshwater Lake	MNQIKQRGGKRIGAGRKPGVKKARNRIARSITLHRDTWAKIESKRGEKSPSKFIESKL
Ga0209298_1000151625	3300027973	Freshwater Lake	MNQKQRGGKRIGSGRKPGIKKARNKIARSITLHRDTWAKIERKRGEKSPSKFIESKL
Ga0304730_10618024	3300028394	Freshwater Lake	MNQTKQRGGKRIGSGRKPGIKKARNKIARSITLHRDTWAKIERKRGEKSPS
Ga0315291_110725731	3300031707	Sediment	MKKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGGLTPSKYIEKLLQ
Ga0315288_106626911	3300031772	Sediment	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWAQIETKRGGLTPSKYIEKL
Ga0315909_1000358116	3300031857	Freshwater	MNQTKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWEQIETKRGILTPSKYIEKLLQ
Ga0315274_101382135	3300031999	Sediment	MSNNKQRGGKRIGSGRKPGIKKARNKIARSITFHRDTWAKIETKRGGLTPSKYIEKLLQ
Ga0315274_103818641	3300031999	Sediment	MSNNKQRGGKRIGSGRKPGIKKARNKIARSIILHRLTWAQIETKRGGLTPSKYIEKLLS
Ga0315284_112477891	3300032053	Sediment	RGGKRIGSGRKPGIKKARNKIARSIILHRLTWAQIETKRGGLTPSKYIEKLLS
Ga0315905_102274163	3300032092	Freshwater	MTKQGRGCNAHNHTMNQTKQRGGKRIGAGRKPGVKKARNKIARSITLHRDTWQMIESKRGEKSPSKYIESKL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078202

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences