Metagenome / Metatranscriptome Family F078154

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078154
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	47 residues
Representative Sequence	VTVRREITVKLPVAVCRDEIRAQLAAAIAEIRGDYRAEIALKPLVQ
Number of Associated Samples	84
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.90 %
% of genes near scaffold ends (potentially truncated)	91.38 %
% of genes from short scaffolds (< 2000 bps)	81.90 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.759 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (66.379 % of family members)
Environment Ontology (ENVO)	Unclassified (80.172 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (61.207 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.97% β-sheet: 5.41% Coil/Unstructured: 71.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF13561	adh_short_C2	19.83
PF00561	Abhydrolase_1	17.24
PF12697	Abhydrolase_6	14.66
PF00903	Glyoxalase	3.45
PF01904	DUF72	2.59
PF08028	Acyl-CoA_dh_2	1.72
PF00171	Aldedh	1.72
PF07883	Cupin_2	0.86
PF05050	Methyltransf_21	0.86
PF08264	Anticodon_1	0.86
PF11845	DUF3365	0.86
PF00583	Acetyltransf_1	0.86
PF01841	Transglut_core	0.86
PF12969	DUF3857	0.86
PF13450	NAD_binding_8	0.86
PF01252	Peptidase_A8	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	2.59
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	1.72
COG0597	Lipoprotein signal peptidase	Cell wall/membrane/envelope biogenesis [M]	1.72
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	1.72
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.72
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	1.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.76 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.76 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.76 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	53.45 %
Unclassified	root	N/A	17.24 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.45 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	48.28 %
Unclassified	root	N/A	17.24 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3.45 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.24 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	14.66 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.45 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.86 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.24 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	13.79 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	5.17 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.59 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.72 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.86 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.24 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	13.79 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	5.17 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	1.72 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.72 %
Nitrosomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas	0.86 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.24 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	13.79 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	5.17 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	1.72 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.72 %
unclassified Nitrosomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → unclassified Nitrosomonas	0.86 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.24 %
Mesorhizobium sp. ORS 3359	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	13.79 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	5.17 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	1.72 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.72 %
Nitrosomonas sp. Is79A3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → unclassified Nitrosomonas → Nitrosomonas sp. Is79A3	0.86 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004080\|Ga0062385_10316598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	901	Open in IMG/M
3300004082\|Ga0062384_100071358	All Organisms → cellular organisms → Bacteria → Proteobacteria	1764	Open in IMG/M
3300009090\|Ga0099827_11117892	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300010162\|Ga0131853_10879545	Not Available	708	Open in IMG/M
3300010376\|Ga0126381_100871146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	1295	Open in IMG/M
3300016294\|Ga0182041_10755162	Not Available	866	Open in IMG/M
3300016294\|Ga0182041_11554607	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300016319\|Ga0182033_11399931	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300016341\|Ga0182035_10039655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3119	Open in IMG/M
3300016341\|Ga0182035_10050579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2818	Open in IMG/M
3300016341\|Ga0182035_10766186	Not Available	845	Open in IMG/M
3300016341\|Ga0182035_11651378	Not Available	578	Open in IMG/M
3300016357\|Ga0182032_10639710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	888	Open in IMG/M
3300016357\|Ga0182032_10808162	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300016371\|Ga0182034_11116515	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300016371\|Ga0182034_11631183	All Organisms → cellular organisms → Bacteria → Proteobacteria	566	Open in IMG/M
3300016387\|Ga0182040_11465651	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300016387\|Ga0182040_11892787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → unclassified Nitrosomonas → Nitrosomonas sp. Is79A3	511	Open in IMG/M
3300016404\|Ga0182037_10710182	Not Available	861	Open in IMG/M
3300018058\|Ga0187766_11386199	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300020580\|Ga0210403_11188635	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300020581\|Ga0210399_10726266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	815	Open in IMG/M
3300020581\|Ga0210399_10767587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	789	Open in IMG/M
3300020583\|Ga0210401_10613354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	949	Open in IMG/M
3300021170\|Ga0210400_10060157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2961	Open in IMG/M
3300021178\|Ga0210408_10753234	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300021358\|Ga0213873_10306131	Not Available	514	Open in IMG/M
3300021406\|Ga0210386_10606405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	945	Open in IMG/M
3300021441\|Ga0213871_10190539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300021444\|Ga0213878_10373158	Not Available	619	Open in IMG/M
3300022532\|Ga0242655_10103041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	787	Open in IMG/M
3300025915\|Ga0207693_10495811	Not Available	953	Open in IMG/M
3300027605\|Ga0209329_1000536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4628	Open in IMG/M
3300027703\|Ga0207862_1234178	Not Available	540	Open in IMG/M
3300027729\|Ga0209248_10050093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1282	Open in IMG/M
3300031231\|Ga0170824_121880341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	810	Open in IMG/M
3300031544\|Ga0318534_10826250	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300031545\|Ga0318541_10148516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1285	Open in IMG/M
3300031545\|Ga0318541_10305167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	887	Open in IMG/M
3300031545\|Ga0318541_10347454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	828	Open in IMG/M
3300031564\|Ga0318573_10008973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	4149	Open in IMG/M
3300031573\|Ga0310915_11060785	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300031640\|Ga0318555_10333947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	821	Open in IMG/M
3300031668\|Ga0318542_10022660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2611	Open in IMG/M
3300031668\|Ga0318542_10553514	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300031681\|Ga0318572_10077818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1838	Open in IMG/M
3300031713\|Ga0318496_10012323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4074	Open in IMG/M
3300031713\|Ga0318496_10017782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3473	Open in IMG/M
3300031724\|Ga0318500_10660843	Not Available	531	Open in IMG/M
3300031736\|Ga0318501_10013194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3270	Open in IMG/M
3300031736\|Ga0318501_10186198	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300031736\|Ga0318501_10763093	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300031744\|Ga0306918_10699175	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300031747\|Ga0318502_10245063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	1045	Open in IMG/M
3300031747\|Ga0318502_10341298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	885	Open in IMG/M
3300031763\|Ga0318537_10270111	Not Available	630	Open in IMG/M
3300031764\|Ga0318535_10172060	Not Available	968	Open in IMG/M
3300031765\|Ga0318554_10382135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	800	Open in IMG/M
3300031769\|Ga0318526_10054840	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300031770\|Ga0318521_10693845	Not Available	618	Open in IMG/M
3300031771\|Ga0318546_10697144	Not Available	714	Open in IMG/M
3300031777\|Ga0318543_10202603	Not Available	881	Open in IMG/M
3300031778\|Ga0318498_10066500	All Organisms → cellular organisms → Bacteria	1615	Open in IMG/M
3300031779\|Ga0318566_10373168	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300031799\|Ga0318565_10039031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2174	Open in IMG/M
3300031805\|Ga0318497_10683913	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300031819\|Ga0318568_10607013	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300031821\|Ga0318567_10529864	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300031835\|Ga0318517_10024355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2372	Open in IMG/M
3300031859\|Ga0318527_10007718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3410	Open in IMG/M
3300031859\|Ga0318527_10033317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	1931	Open in IMG/M
3300031860\|Ga0318495_10073518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1525	Open in IMG/M
3300031860\|Ga0318495_10120143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1184	Open in IMG/M
3300031879\|Ga0306919_10624560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	831	Open in IMG/M
3300031880\|Ga0318544_10245153	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300031890\|Ga0306925_10579284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1187	Open in IMG/M
3300031890\|Ga0306925_11873011	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300031897\|Ga0318520_10001813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7509	Open in IMG/M
3300031897\|Ga0318520_10229592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1102	Open in IMG/M
3300031910\|Ga0306923_10010944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	9216	Open in IMG/M
3300031910\|Ga0306923_10633333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	1197	Open in IMG/M
3300031912\|Ga0306921_10008769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	10692	Open in IMG/M
3300031912\|Ga0306921_12275329	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031942\|Ga0310916_10204305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1654	Open in IMG/M
3300031942\|Ga0310916_10321864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1312	Open in IMG/M
3300031942\|Ga0310916_10996882	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300031945\|Ga0310913_10600061	Not Available	781	Open in IMG/M
3300031946\|Ga0310910_10276689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1317	Open in IMG/M
3300031959\|Ga0318530_10108549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1108	Open in IMG/M
3300032009\|Ga0318563_10060274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1958	Open in IMG/M
3300032025\|Ga0318507_10063505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1482	Open in IMG/M
3300032025\|Ga0318507_10179056	Not Available	912	Open in IMG/M
3300032025\|Ga0318507_10200242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	862	Open in IMG/M
3300032042\|Ga0318545_10330931	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300032043\|Ga0318556_10219105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	991	Open in IMG/M
3300032051\|Ga0318532_10024503	All Organisms → cellular organisms → Bacteria → Proteobacteria	1972	Open in IMG/M
3300032054\|Ga0318570_10022968	All Organisms → cellular organisms → Bacteria	2388	Open in IMG/M
3300032054\|Ga0318570_10082395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1385	Open in IMG/M
3300032054\|Ga0318570_10248551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	806	Open in IMG/M
3300032054\|Ga0318570_10376302	Not Available	647	Open in IMG/M
3300032055\|Ga0318575_10033050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2281	Open in IMG/M
3300032059\|Ga0318533_10061056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2533	Open in IMG/M
3300032060\|Ga0318505_10026844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2309	Open in IMG/M
3300032063\|Ga0318504_10041236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	1895	Open in IMG/M
3300032063\|Ga0318504_10536271	Not Available	561	Open in IMG/M
3300032064\|Ga0318510_10009324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2808	Open in IMG/M
3300032064\|Ga0318510_10288495	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300032067\|Ga0318524_10149398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1181	Open in IMG/M
3300032090\|Ga0318518_10163292	Not Available	1134	Open in IMG/M
3300032091\|Ga0318577_10289960	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300032094\|Ga0318540_10049893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1876	Open in IMG/M
3300032174\|Ga0307470_11069567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	647	Open in IMG/M
3300032261\|Ga0306920_100230686	All Organisms → cellular organisms → Bacteria → Proteobacteria	2762	Open in IMG/M
3300032261\|Ga0306920_103432495	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300033289\|Ga0310914_10161037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1986	Open in IMG/M
3300033289\|Ga0310914_11393344	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.41%
Host-Associated	Host-Associated	2.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.83%
Aquatic	Environmental → Aquatic	2.59%
Plants	Host-Associated → Plants	1.72%
Arthropoda	Host-Associated → Arthropoda	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.83%
Freshwater	Environmental → Aquatic → Freshwater	2.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.72%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	91.38%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.59%
Loam	Environmental → Terrestrial → Soil → Loam	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.72%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.86%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	88.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.72%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.86%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	66.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.69%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.86%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062385_103165982	3300004080	Bog Forest Soil	VTVRREITVKLPVAVCRDEIRSQLAEAIAEIRGDYRAEIALKPLA
Ga0062384_1000713583	3300004082	Bog Forest Soil	VTVRREITVKLPVAVCRDEIRSQLAEAIAEIRGDYRAEIALKPLAQ*
Ga0099827_111178922	3300009090	Vadose Zone Soil	SVRRELTVKLPVAVCRDEIRLKLAEAIAEIRGDYRSVIALKPLAE*
Ga0131853_108795451	3300010162	Termite Gut	LHYRSEWNREGQTVTVRREITVRVPVAVCRDEIRAKLAEAIAEIRGDYRSAIALEPLVH*
Ga0126381_1008711461	3300010376	Tropical Forest Soil	VRREFTVKLPVAVCRDEICVKPAEAIAEIRGDYCAEITIKPLIR*
Ga0182041_107551622	3300016294	Soil	LPVAVCREEIRAQLADAVALIRGDYRDEITLKPLVH
Ga0182041_115546071	3300016294	Soil	ARREITVKLPVVVCRDEIRAQLAAAIAEIRGDYRAEIALKPLVH
Ga0182033_113999312	3300016319	Soil	VRREITVKLPVAVCRDEIRAQLAAAIAEIRGDYRAEIALKPLVQ
Ga0182035_100396555	3300016341	Soil	YQSDWSRDGQVLTVRREITVKLPVAVCRDEIREQLTKAIAEIRGDYRAEIALKPLVH
Ga0182035_100505791	3300016341	Soil	TVRREITVRLPIAVCRDEIRAKLAEAIAEIRGDYSSTIALEPLVQ
Ga0182035_107661862	3300016341	Soil	WTREGQIVTVHREMTTKLPVAVCRDEIRAQLADAVTLIRGDYRDEIALKPLVH
Ga0182035_116513781	3300016341	Soil	RLPVAVCRDEIRAQLADAVALIRGDYRDEITLKPLVH
Ga0182032_106397102	3300016357	Soil	RREITVKLPVAVCHDEIREQLAKVIAEIRGDYRAEIALKPLVQ
Ga0182032_108081621	3300016357	Soil	RDGQIVTVRREITVKLPVAVCRDEIRAKLAEAIAEIRGDYRAEIALKPLFQ
Ga0182034_111165151	3300016371	Soil	VSVRREITVKLPVAVCRDEIRTQLAEAIAEIRGDYRAEIALKPLVH
Ga0182034_116311831	3300016371	Soil	YQSEWKREGQTVEVRREITVTVPVAVCRDEIRAKLAEAIAEIRGDYRSTIALEPLVH
Ga0182040_114656512	3300016387	Soil	RDGQVVTVRREITVKLPVAVCRAEIRAQLAEAIAQIRGDYRAEITLKPLVQ
Ga0182040_118927872	3300016387	Soil	RVTSPVAVCRDEIRSQLAEAIAEIRGDYRAEIALKPLAH
Ga0182037_107101821	3300016404	Soil	GQVVTVHREMTATLPVAVCREEIRAQLADAVALIRGDYRDEIALKPLVH
Ga0187766_113861991	3300018058	Tropical Peatland	GQVVTVRREITVKLSVAVCRDEIRLQLAEAIAAIRGDYRAEIALKPLVH
Ga0210403_111886351	3300020580	Soil	ERRHDGQVVTVRREVTVNLPVAVCRDEIRAQLVEAIAEIRGDYRAEITLKPLVH
Ga0210399_107262661	3300020581	Soil	QVVTVRREITVNLPVAVCRDEIRAQLVEAIAEIRGDYRAEITLKPLVH
Ga0210399_107675871	3300020581	Soil	RYESNWQHDGQSVTVRREITVKLPVAVCRGEIRSQLAEAIAEIRGDYRAEIALKPLVH
Ga0210401_106133541	3300020583	Soil	DWNRDGQVVTVRREITVKLPVAVCRDEIRAKLAEAIAEIRGDYRAEITLKPPAH
Ga0210400_100601572	3300021170	Soil	VTVRREITVKLPVAVCRDEIRAKLAEAIAEIRGDYRAEITLKPPAH
Ga0210408_107532342	3300021178	Soil	HYQSERRHDGQVVTVRREITVNLPVAVCRDEIRAQLVEAIAEIRGDYRAEITLKPLVH
Ga0213873_103061312	3300021358	Rhizosphere	VRREIIVKLPVAVCRDEIRARLVEAIAEIRADYRSPLELKPLVE
Ga0210386_106064053	3300021406	Soil	SDWNRDGQVVTVRREITVKLPVAVCRDEIRAKLAEAIAEIRGDYRAEITLKPPAH
Ga0213871_101905392	3300021441	Rhizosphere	YLRYHSEWTRNGQVVTVHREMTARLSVAVCRDEIRAQLADAVAQIRGDYRDEITLKPLVH
Ga0213878_103731582	3300021444	Bulk Soil	SEWTRDGQVVTVHREMTATLPVAVCRDEIRAQLADAVALIRGDYRDEITLKPLVH
Ga0242655_101030413	3300022532	Soil	TVRREITVKLPVAVCRDEIRAKLAEAIAEIRGDYRAEITLKPPAH
Ga0207693_104958112	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VRVRREITVSLPVAVCRDEIRAKLVESIAEIRGDYRSTIALEPLVH
Ga0209329_10005368	3300027605	Forest Soil	VTVRREIIVRLPDAVCRDEIGIKIAEAIAQIRGDYRSEIALKPLVQ
Ga0207862_12341781	3300027703	Tropical Forest Soil	RYRSDWSREGQTVKVRREITVKLPVAVCRDEIRTKLAEAIAEIRGDYRSTIALEPLVH
Ga0209248_100500932	3300027729	Bog Forest Soil	VTVRREITVKLPVAVCRDEIRSQLAEAIAEIRGDYRAEIALKPLAQ
Ga0170824_1218803412	3300031231	Forest Soil	RYDSKWQRDGQFVTVRREITVKLPVSVCREEIRIELAEAIAEIRGDYRAEIALKPLVQ
Ga0318534_108262501	3300031544	Soil	QVLTVRREITVKLPVAVCRDEIREQLTKAIAEIRGDYRAEIALKPLVQ
Ga0318541_101485162	3300031545	Soil	GQIVTVRREITVSLPVAVCRDEIRAQLAQAIAEIRGDYRAEIALKPLVQ
Ga0318541_103051672	3300031545	Soil	VVTVRREIMVKLPVAVCRDEIRTQLAKAIAEIRGDYRAEIALKPLVH
Ga0318541_103474542	3300031545	Soil	GQVVTVRREITVKLAVAVCRDEIREQLAKVIAEIRGDYRAEIALKPLVQ
Ga0318573_100089731	3300031564	Soil	REITVRLPTAVCRDEIRAKLAEAIAEIRGDYSSTIALEPLVH
Ga0310915_110607851	3300031573	Soil	VSVRREITVKLPVAVCRDEIRAQLVDAIADIRGDYRTQIALKPLVH
Ga0318555_103339472	3300031640	Soil	REMTVKLPVAVCHDEIREQLAKVIAEIRGDYRAEIALKPLVQ
Ga0318542_100226601	3300031668	Soil	RRDGQVVTVRREMTVKLPVAVCRDEIREQLAKVIAEIRGDYRAEIALKPLVQ
Ga0318542_105535142	3300031668	Soil	ITVELPVAVCRDEIRAQLAEAIAEIRGDYRAEIALKPLVH
Ga0318572_100778181	3300031681	Soil	LPVAVCRDEIRSQLAAAISEIRGDYRAEIALKPLVH
Ga0318496_100123235	3300031713	Soil	VKLPVAVCRDEIRSQLAAAISEIRGDYRAEIALKPLVH
Ga0318496_100177826	3300031713	Soil	VRLPDAVCRDEIRAKLAEAIAEIRGDYSSTIALEPLVH
Ga0318500_106608431	3300031724	Soil	SEWTRNGQIVTVHREMTARLPVAVCRDEIRAQLADAVALIRGDYRDEIALKPLVH
Ga0318501_100131945	3300031736	Soil	LHYQSEWNRESQTITVRREITVRLPDAVCRDEIRAKLAEAIAEIRGDYSSTIALEPLVH
Ga0318501_101861981	3300031736	Soil	VKLAVAVCRDEIREQLAKVIAEIRGDYRAEIALKPLVQ
Ga0318501_107630932	3300031736	Soil	QSEWKRDGQVVTVRREIMVKLPVAVCREEIRAQLAAVIAEIRGDYRAEIALKPLVH
Ga0306918_106991752	3300031744	Soil	NPYLRYQSDWKRDGQVVTVRREIMVKLPVAVCREEIRAQLAAVIAEIRGDYRAEIALKPLVH
Ga0318502_102450631	3300031747	Soil	PYLHYQSEWRHDGQVVTVRREITVNLPVAVCRDEIRAQLVEAIAEIRGDYRAEIILKPLV
Ga0318502_103412982	3300031747	Soil	DWKRDGQVVTVRREIMVKLPVAVCREEIRAQLAAVIAEIRGDYRAEIALKPLVH
Ga0318537_102701111	3300031763	Soil	YLRYRSEWTRNGQVVTVHREMTARLPVAVCRDEIRAQLADAVALIRGDYRDEIALKPLVH
Ga0318535_101720601	3300031764	Soil	ITVKLPVAVCRDEIRTKLAEAIAEIRGDYRSTIALEPLVH
Ga0318554_103821351	3300031765	Soil	PVAVCREEIRAQLAAVIAEIRGDYRAEIALKPLVH
Ga0318526_100548401	3300031769	Soil	QVVTARREITVKLPIAVCRGEIRSQLAAAIAEIRGDYRAEIALKPLVH
Ga0318521_106938451	3300031770	Soil	VKLPVAVCRDEVRAKLAEAIAEIRGDYRSTIALEPLVH
Ga0318546_106971442	3300031771	Soil	LPTAVCRDEIRAKLAEAIAEIRGDYSSTIALEPLVHQ
Ga0318543_102026031	3300031777	Soil	PYLRYRSDWSREGQTVKVRREITVKLPVAVCRDEVRAKLAEAIAEIRGDYRSTIALEPLV
Ga0318498_100665003	3300031778	Soil	PDLRYQSQWTRDGQVVTARREITVKLPVAVCRDEIRSQLAAAIAEIRGDYRAEIALKPLV
Ga0318566_103731682	3300031779	Soil	PYLRYQSEWKRDGQVVTVRREIMVKLPVAVCREEIRAQLAAVIAEIRGDYRAEIALKPLV
Ga0318565_100390314	3300031799	Soil	GQVVTARREITVKLPVAVCRDEIRSQLAAAISEIRGDYRAEIALKPLVH
Ga0318497_106839132	3300031805	Soil	SRDGQVVTVRREITVKLAVAVCRDEIREQLAKVIAEIRGDYRAEIALKPLVQ
Ga0318568_106070132	3300031819	Soil	LVTVRREITVELPVAVCRDEIRAQLAEAIAEIRGDYRAEIALKPLVH
Ga0318567_105298642	3300031821	Soil	SYQSGWKRDGQVVSVRREITVKLPVAVCRDEIRTQLAEAIAEIRGDYRAEIALKPLVH
Ga0318517_100243552	3300031835	Soil	VTVRREITVNLPVAVCRDEIRAQLVEAIAEIRGDYRAEIILKPLVR
Ga0318527_100077181	3300031859	Soil	PAAVCCDEIRAKLAEAIAEIRGDYSSTIALEPLVH
Ga0318527_100333171	3300031859	Soil	SVRREITVKLPVAVCRDEIRTQLAEAIAEIRGDYRAEIALKPLVH
Ga0318495_100735183	3300031860	Soil	VRREITVKLPVAVCRDEVRAKLAEAIAEIRGDYRSTIALEPLVH
Ga0318495_101201431	3300031860	Soil	TVRREITVNLPVAVCRDEIRAQLVEAIAEIRGDYRAEIILKPLVR
Ga0306919_106245602	3300031879	Soil	VTVRREITVKLPVAVCRDEIRAQLAAAIAEIRGDYRAEIALKPLVQ
Ga0318544_102451531	3300031880	Soil	EWRHDGQVVTVRREITVNLPVAVCRDEIRAQLVEAIAEIRGDYRAEIILKPLVR
Ga0306925_105792842	3300031890	Soil	VRRELTVRLPVAVCRNDIRRALADAIGQIRGDYRSEIALKPMVQ
Ga0306925_118730111	3300031890	Soil	KLPVAVCRDEIRAQPVDAIADIRGDYRTQIALKPLVH
Ga0318520_100018131	3300031897	Soil	YLRYQSQWTRDGQVVTARREITVKLPVAVCRDEIRSQLAAAISEIRGDYRAEIALKPLVH
Ga0318520_102295922	3300031897	Soil	ITVKLPVAVCRDEIRAQLADAIAEIRGDYRAEIALKPLVH
Ga0306923_1001094410	3300031910	Soil	LEPQGQTVKVRREITVKLPVAVCRDEVRAKLAEAIAEIRGDYRSTIALEPLVH
Ga0306923_106333331	3300031910	Soil	EITVSLPVAVCRDEIRAQLAQAIAEIRGDYRAEIALKPLVQ
Ga0306921_1000876910	3300031912	Soil	KLPVAVCRDEVRAKLAEAIAEIRGDYRSTIALEPLVH
Ga0306921_122753292	3300031912	Soil	DGQVVSVRREITVKLPVAVCRDEIRAQLVDAIADIRGDYRTQIALKPLVH
Ga0310916_102043054	3300031942	Soil	EITVRLPTAVCRDEIRAKLAEAIAEIRGDYSSTIALEPLVHQ
Ga0310916_103218643	3300031942	Soil	YLRYQSDWSRDAQVVIVRREITVKLPVAVCRDEIREQLAKAIAEIRGDYRAEITLKPLVQ
Ga0310916_109968822	3300031942	Soil	GQVVSVRREITVKLPVAVCRDEIRAQLADAIADIRGDYRTQIALKPLVH
Ga0310913_106000611	3300031945	Soil	KLPVVVCRDEIRAQLAAAIAEIRGDYRAEIALKPLVH
Ga0310910_102766891	3300031946	Soil	DWSRDAQVVIVRREITVKLPVAVCRDEIREQLAKAIAEIRGDYRAEIALKPLVQ
Ga0318530_101085492	3300031959	Soil	MTTKLPVAVCRDEIRAQLADAVTLIRGDYRDEIALKPLVH
Ga0318563_100602741	3300032009	Soil	REITVRLPDAVCRDEIRAKLAEAIAEIRGDYSSTIALEPLVHQ
Ga0318507_100635053	3300032025	Soil	WKHDGQVVSVRREITVKLPVAVCRDEIRAQLADAIADIRGDYRTQIALKPLVH
Ga0318507_101790562	3300032025	Soil	QVVIVRREITVKLPVAVCRDEIREQLAKAIAEIRGDYRAEITLKPLVQ
Ga0318507_102002421	3300032025	Soil	VKLPVAVCRDEIRAQLAEAIAEIRGDYRAEIALKPLVH
Ga0318545_103309312	3300032042	Soil	YLRYQSDWKRDGQVVTVRREIMVKLPVAVCREEIRAQLAAVIAEIRGDYRAEIALKPLVH
Ga0318556_102191051	3300032043	Soil	KLPVAVCHDEIREQLAKVIAEIRGDYRAEIALKPLVQ
Ga0318532_100245031	3300032051	Soil	ITVKLPVAVCRDEIRAKLAEAIAEIRGDYRAEIALKPLFQ
Ga0318570_100229681	3300032054	Soil	GQLVTVRREITVELPVAVCRDEIRAQLAEAIAEIRGDYRAEIALKPLVH
Ga0318570_100823951	3300032054	Soil	LHYQSEWNRESQTITVRREITVRLPDAVCRDEIRAKLAEAIAKIRGDYSSTIALEPLVH
Ga0318570_102485511	3300032054	Soil	KLAVAVCRDEIREQLAKVIAEIRGDYRAEIALKPLVQ
Ga0318570_103763021	3300032054	Soil	DWSREGQTVKVRREITVKLPVAVCRDEVRAKLAEAIAEIRGDYRSTIALEPLVH
Ga0318575_100330504	3300032055	Soil	WKRDGQVVAVRREITVKLPVAVCRDEIRAQLAEAIAEIRGDYRAEIALKPLVH
Ga0318533_100610561	3300032059	Soil	TAVCRDEIRAKLAEAIAEIRGDYSSTIALEPLVHQ
Ga0318505_100268441	3300032060	Soil	LAVAVCRDEIREQLAKVIAEIRGDYRAEIALKPLVQ
Ga0318504_100412361	3300032063	Soil	VKLPVAVCRDEIREQLAKVIAEIRGDYRAEIALKPLVQ
Ga0318504_105362711	3300032063	Soil	EMTTKLPVAVCRDEIRAQLADAVTLIRGDYRDEIALKPLVH
Ga0318510_100093241	3300032064	Soil	PYLHYQSEWNRESQTITVRREITVRLPDAVCRDEIRAKLAEAIAEIRGDYSSTIALEPLV
Ga0318510_102884951	3300032064	Soil	YQSDWSRDAQVVIVRREITVKLPVAVCRDEIREQLAKAIAEIRGDYRAEITLKPLVQ
Ga0318524_101493981	3300032067	Soil	WNREGQTITVRREITVRLPIAVCRDEIRAKLAEAIAEIRGDYSSTIALEPLVQ
Ga0318518_101632923	3300032090	Soil	SREGQTVKVRREITVKLPVAVCRDEVRAKLAEAIAEIRGDYRSTIALEPLVH
Ga0318577_102899601	3300032091	Soil	LPVAVCRDEIRAQLAQAIVEIRGDYRAEIALKPLVQ
Ga0318540_100498931	3300032094	Soil	VVIVRREITVKLPVAVCRDEIREQLAKAIAEIRGDYRAEITLKPLVQ
Ga0307470_110695671	3300032174	Hardwood Forest Soil	VITVKLPVAVCRFEIRADLAKAIAEIRGDYRAEIALKPLVQ
Ga0306920_1002306862	3300032261	Soil	VTVRRELTVRLPVAVCRNDIRRALADAIGQIRGDYRSEIALKPMVQ
Ga0306920_1034324951	3300032261	Soil	LPVAVCREEIRAQLAAVIAEIRGDYRAEIALKPLVH
Ga0310914_101610374	3300033289	Soil	QSEWNREGQTITVRREITVRLPTAVCRDEIRAKLAEAIAEIRGDYSSTIALEPLVHQ
Ga0310914_113933441	3300033289	Soil	PVAVCRDEIRAQLAQTIAEIRGDYRAEIALKPLVQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078154

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences