Metagenome Family F078131

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078131
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	39 residues
Representative Sequence	MKIYVLLMLIGVIVAFSYLPSFGRAKPVPPAPPDSVPA
Number of Associated Samples	83
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.90 %
% of genes near scaffold ends (potentially truncated)	13.79 %
% of genes from short scaffolds (< 2000 bps)	79.31 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.966 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland (17.241 % of family members)
Environment Ontology (ENVO)	Unclassified (49.138 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.207 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF01972	SDH_sah	17.24
PF01343	Peptidase_S49	12.07
PF05175	MTS	9.48
PF09413	DUF2007	7.76
PF02091	tRNA-synt_2e	6.03
PF11295	DUF3096	1.72
PF00348	polyprenyl_synt	1.72
PF04011	LemA	0.86
PF00535	Glycos_transf_2	0.86
PF09360	zf-CDGSH	0.86
PF08544	GHMP_kinases_C	0.86
PF14076	DUF4258	0.86
PF13659	Obsolete Pfam Family	0.86
PF01872	RibD_C	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	58.62
COG0752	Glycyl-tRNA synthetase, alpha subunit	Translation, ribosomal structure and biogenesis [J]	6.03
COG0142	Geranylgeranyl pyrophosphate synthase	Coenzyme transport and metabolism [H]	1.72
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.86
COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	Cell wall/membrane/envelope biogenesis [M]	0.86
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.97 %
Unclassified	root	N/A	31.03 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.97 %
Unclassified	root	N/A	31.03 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.97 %
Unclassified	root	N/A	31.03 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	68.10 %
Unclassified	root	N/A	31.03 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	67.24 %
Unclassified	root	N/A	31.03 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	61.21 %
Unclassified	root	N/A	31.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	23.28 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.45 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	5.17 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.59 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	1.72 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.72 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	4.31 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.72 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.86 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.86 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	4.31 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.72 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.86 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.86 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10006283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8275	Open in IMG/M
3300004082\|Ga0062384_101051922	Not Available	585	Open in IMG/M
3300004091\|Ga0062387_100072435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1750	Open in IMG/M
3300004152\|Ga0062386_100678655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	845	Open in IMG/M
3300005531\|Ga0070738_10020697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5016	Open in IMG/M
3300005531\|Ga0070738_10254043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	764	Open in IMG/M
3300005532\|Ga0070739_10013237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7526	Open in IMG/M
3300005534\|Ga0070735_10268973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1031	Open in IMG/M
3300005541\|Ga0070733_10158059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1473	Open in IMG/M
3300005541\|Ga0070733_10165259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1440	Open in IMG/M
3300005921\|Ga0070766_11042042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	563	Open in IMG/M
3300006059\|Ga0075017_100967986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	662	Open in IMG/M
3300006059\|Ga0075017_101276470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	576	Open in IMG/M
3300006086\|Ga0075019_10141707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1401	Open in IMG/M
3300009518\|Ga0116128_1055972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1232	Open in IMG/M
3300009519\|Ga0116108_1043106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1450	Open in IMG/M
3300009519\|Ga0116108_1070408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1083	Open in IMG/M
3300009521\|Ga0116222_1257520	Not Available	753	Open in IMG/M
3300009522\|Ga0116218_1356538	Not Available	653	Open in IMG/M
3300009523\|Ga0116221_1172365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	940	Open in IMG/M
3300009524\|Ga0116225_1092590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1407	Open in IMG/M
3300009643\|Ga0116110_1099546	Not Available	990	Open in IMG/M
3300009645\|Ga0116106_1116938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	859	Open in IMG/M
3300009683\|Ga0116224_10285931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	785	Open in IMG/M
3300009764\|Ga0116134_1130756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	894	Open in IMG/M
3300009764\|Ga0116134_1246041	Not Available	617	Open in IMG/M
3300009839\|Ga0116223_10867848	Not Available	515	Open in IMG/M
3300010343\|Ga0074044_10025840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4186	Open in IMG/M
3300010343\|Ga0074044_10214353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1277	Open in IMG/M
3300010343\|Ga0074044_10243661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1188	Open in IMG/M
3300010343\|Ga0074044_10690706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300010379\|Ga0136449_101716480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	945	Open in IMG/M
3300010379\|Ga0136449_103222287	Not Available	630	Open in IMG/M
3300010379\|Ga0136449_103426388	Not Available	606	Open in IMG/M
3300010379\|Ga0136449_103655120	Not Available	582	Open in IMG/M
3300014152\|Ga0181533_1034064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2892	Open in IMG/M
3300014164\|Ga0181532_10630524	Not Available	581	Open in IMG/M
3300014165\|Ga0181523_10124495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1533	Open in IMG/M
3300014200\|Ga0181526_10832080	Not Available	581	Open in IMG/M
3300014200\|Ga0181526_10893295	Not Available	559	Open in IMG/M
3300014489\|Ga0182018_10022611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4115	Open in IMG/M
3300014495\|Ga0182015_10018653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	5764	Open in IMG/M
3300014501\|Ga0182024_10055541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	6200	Open in IMG/M
3300014501\|Ga0182024_10131161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3562	Open in IMG/M
3300017822\|Ga0187802_10030181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1919	Open in IMG/M
3300017925\|Ga0187856_1000460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	37287	Open in IMG/M
3300017928\|Ga0187806_1387888	Not Available	502	Open in IMG/M
3300017929\|Ga0187849_1020187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3774	Open in IMG/M
3300017931\|Ga0187877_1056928	Not Available	1757	Open in IMG/M
3300017933\|Ga0187801_10027056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1990	Open in IMG/M
3300017934\|Ga0187803_10044157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1764	Open in IMG/M
3300017936\|Ga0187821_10362190	Not Available	587	Open in IMG/M
3300017946\|Ga0187879_10037576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2900	Open in IMG/M
3300017946\|Ga0187879_10149671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1321	Open in IMG/M
3300017946\|Ga0187879_10227320	Not Available	1043	Open in IMG/M
3300017955\|Ga0187817_10828515	Not Available	591	Open in IMG/M
3300017959\|Ga0187779_11030524	Not Available	572	Open in IMG/M
3300017961\|Ga0187778_10398240	Not Available	903	Open in IMG/M
3300017970\|Ga0187783_10223139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1381	Open in IMG/M
3300017970\|Ga0187783_10758770	Not Available	700	Open in IMG/M
3300017972\|Ga0187781_10102077	Not Available	1993	Open in IMG/M
3300017972\|Ga0187781_10239205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1284	Open in IMG/M
3300017972\|Ga0187781_11225165	Not Available	552	Open in IMG/M
3300017974\|Ga0187777_10550275	Not Available	810	Open in IMG/M
3300017974\|Ga0187777_11471246	Not Available	504	Open in IMG/M
3300017975\|Ga0187782_10073029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2506	Open in IMG/M
3300017975\|Ga0187782_11542914	Not Available	524	Open in IMG/M
3300018004\|Ga0187865_1306942	Not Available	523	Open in IMG/M
3300018017\|Ga0187872_10096142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1489	Open in IMG/M
3300018022\|Ga0187864_10275013	Not Available	762	Open in IMG/M
3300018033\|Ga0187867_10419995	Not Available	740	Open in IMG/M
3300018037\|Ga0187883_10175930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1099	Open in IMG/M
3300018038\|Ga0187855_10020712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4302	Open in IMG/M
3300018038\|Ga0187855_10191075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1211	Open in IMG/M
3300018047\|Ga0187859_10133936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1309	Open in IMG/M
3300018057\|Ga0187858_10413446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	836	Open in IMG/M
3300018058\|Ga0187766_10509605	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300018062\|Ga0187784_10011610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7113	Open in IMG/M
3300018062\|Ga0187784_10341454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1214	Open in IMG/M
3300018062\|Ga0187784_10412338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1092	Open in IMG/M
3300018062\|Ga0187784_10520546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	958	Open in IMG/M
3300018062\|Ga0187784_11494191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	535	Open in IMG/M
3300018085\|Ga0187772_10023807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3565	Open in IMG/M
3300018085\|Ga0187772_10413548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	940	Open in IMG/M
3300018090\|Ga0187770_10316071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1217	Open in IMG/M
3300020582\|Ga0210395_10007546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8238	Open in IMG/M
3300021402\|Ga0210385_10138238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1734	Open in IMG/M
3300025500\|Ga0208686_1048160	Not Available	1003	Open in IMG/M
3300027652\|Ga0209007_1023726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1579	Open in IMG/M
3300027701\|Ga0209447_10126102	Not Available	703	Open in IMG/M
3300027767\|Ga0209655_10011348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3011	Open in IMG/M
3300027768\|Ga0209772_10124940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	800	Open in IMG/M
3300027773\|Ga0209810_1026941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3521	Open in IMG/M
3300027854\|Ga0209517_10499839	Not Available	663	Open in IMG/M
3300027867\|Ga0209167_10123291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1342	Open in IMG/M
3300027867\|Ga0209167_10781602	Not Available	520	Open in IMG/M
3300027895\|Ga0209624_10121749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	1714	Open in IMG/M
3300027965\|Ga0209062_1308219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	530	Open in IMG/M
3300027986\|Ga0209168_10166025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1115	Open in IMG/M
3300030659\|Ga0316363_10431512	Not Available	508	Open in IMG/M
3300031670\|Ga0307374_10034703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	5719	Open in IMG/M
3300031708\|Ga0310686_100634697	All Organisms → cellular organisms → Bacteria → Proteobacteria	7251	Open in IMG/M
3300031708\|Ga0310686_107046630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	699	Open in IMG/M
3300031708\|Ga0310686_111840578	Not Available	601	Open in IMG/M
3300031708\|Ga0310686_115817287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	950	Open in IMG/M
3300031708\|Ga0310686_118772643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	1067	Open in IMG/M
3300032160\|Ga0311301_10247112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2950	Open in IMG/M
3300032160\|Ga0311301_10357067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2279	Open in IMG/M
3300032160\|Ga0311301_10446156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	1951	Open in IMG/M
3300032770\|Ga0335085_10247378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2146	Open in IMG/M
3300032783\|Ga0335079_11032809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	836	Open in IMG/M
3300032805\|Ga0335078_11085624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	938	Open in IMG/M
3300032892\|Ga0335081_11486571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	751	Open in IMG/M
3300032895\|Ga0335074_11142370	Not Available	665	Open in IMG/M
3300032896\|Ga0335075_10388553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1492	Open in IMG/M
3300032955\|Ga0335076_10652769	Not Available	934	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.93%
Aquatic	Environmental → Aquatic	37.07%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.93%
Freshwater	Environmental → Aquatic → Freshwater	34.48%
Sediment	Environmental → Aquatic → Sediment	2.59%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	34.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	30.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.59%
Loam	Environmental → Terrestrial → Soil → Loam	2.59%
Clay	Environmental → Terrestrial → Soil → Clay	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	26.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	22.41%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.90%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.17%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.72%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	17.24%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	13.79%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	12.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	9.48%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	6.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.03%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.17%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.31%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.45%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.72%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.72%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300025500	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027965	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100062834	3300000567	Peatlands Soil	MKIYVLLMLIGVIVAFSYLPSFGRAKPVPPAPPDSLPA*
Ga0062384_1010519221	3300004082	Bog Forest Soil	MKIYVLLMLIGIIVGFSYLPLRRQTKVAAPLPSEPAAVSIRG*
Ga0062387_1000724354	3300004091	Bog Forest Soil	MKIYVLGMLISVIVGFSYIPRKNHAKQAEAATPDSLPANA*
Ga0062386_1006786552	3300004152	Bog Forest Soil	MKIYALFMLIGVIVGFSYLPIRRQTKVATSTASDPVIVSIRG*
Ga0070738_100206977	3300005531	Surface Soil	MKIYMLMLLIGVIVGLSYLPLRGRAKPAGTAPPDSVPA*
Ga0070738_102540432	3300005531	Surface Soil	MKIYMLLMLISVIVGFSYLPSRRRSKEPTPVPPEPVPAL*
Ga0070739_100132377	3300005532	Surface Soil	MKIYMLMLLIGVIVGLSYLPLRGRTKPAGTAPPDSVPA*
Ga0070735_102689732	3300005534	Surface Soil	MKIYVLWMLISVIVGFSYIPRKNHAKRAEAAAPDSLPANA*
Ga0070733_101580593	3300005541	Surface Soil	MKIYALLMLIGVIVSMSYIPVRRAKPAATPAPDSLPANS*
Ga0070733_101652592	3300005541	Surface Soil	MKIYVLLMLIGVIVSMSYIPVRRAKPTATPEPDSVPANG*
Ga0070766_110420421	3300005921	Soil	MKIYVLLMLIGVIVGFSQLPIRRAAKAPPPVAPDSIAARV*
Ga0075017_1009679862	3300006059	Watersheds	MKIYVLLMLIGVIVGFSQLPIRRQPKVAAAAPSDSVAASIRG*
Ga0075017_1012764702	3300006059	Watersheds	MLIGVIVGFSYLPIRRQTKVATSTGSDPVIVSIRG*
Ga0075019_101417072	3300006086	Watersheds	MKIYVLLMLIGVIVGFSQLPIRRQPKVAAPAPSDSVAASIRG*
Ga0116128_10559721	3300009518	Peatland	MKIYVLLTLIGVIVAFSYLPRFGRAKPVPPAPPDSVPA*
Ga0116108_10431061	3300009519	Peatland	AEWNGGSAQAMKIYVLLTLIGVIVAFSYLPRFGRAKPVPPAPPDSVPA*
Ga0116108_10704082	3300009519	Peatland	MKIYVLLMLIGVIVAFSYLPSFGRAKPVPPAPPDSVPA*
Ga0116222_12575202	3300009521	Peatlands Soil	MKIYVLLMLISVIVGFSYLPGRRQSKAAAPVSPDSVPANA*
Ga0116218_13565381	3300009522	Peatlands Soil	MKIYVLLMLIGVIVAFSYLPSFRRAKPVPPAPPDS
Ga0116221_11723652	3300009523	Peatlands Soil	MKIYVLLMLIGVIVAFSYLPSFRRAKPVPPAPPDSVPA*
Ga0116225_10925901	3300009524	Peatlands Soil	IYVLLMLISVIVGFSYLPGRRQSKAAAPVSPDSVPANA*
Ga0116110_10995462	3300009643	Peatland	MKIYVLLMLIGVIVGFSYLPSFGRAKPVPPTPPDSVPA*
Ga0116106_11169382	3300009645	Peatland	MKIYVLMMLIGVIVGFSHVPSRGRAKAAAPVPPDSVPA*
Ga0116224_102859312	3300009683	Peatlands Soil	MKIYVLLMLIGIIVAFSYLPRFGRAKPVPPAPPDSLPA*
Ga0116134_11307562	3300009764	Peatland	MKIYVLLMLISVIVGFSYLPSRRQAKPSAPVSPGSVAAEA*
Ga0116134_12460411	3300009764	Peatland	GWRAHAMKIYVLMMLIGVIVGFSHVPSRGRAKAAAPVPPDSVPA*
Ga0116223_108678482	3300009839	Peatlands Soil	MKIYVLLTLIGVIVAFSYLPRFGRAKPVPPAPPDSVPE*
Ga0074044_100258402	3300010343	Bog Forest Soil	MKIYVLLMLIGVIVGFSYLPSRDQAKAATPVAPDSVPA*
Ga0074044_102143532	3300010343	Bog Forest Soil	MKIYALFMLIGVIVGFSYLPIRRQTKVATPTASDPVIVSIRG*
Ga0074044_102436612	3300010343	Bog Forest Soil	MKIYVLFMLISAIVGFSYLPGRGQAKPATPARPDSAPI*
Ga0074044_106907062	3300010343	Bog Forest Soil	MKIYVLMMLIGVIVGFSYVPSRGRAKAAAPVPPDSVPA*
Ga0136449_1017164802	3300010379	Peatlands Soil	AQAMKIYVLLMLIGVIVAFSYLPSFRRAKPVPPAPPDSVPA*
Ga0136449_1032222872	3300010379	Peatlands Soil	MKIYVLGMLISVIVGFSYIPRKNQAKQAEAAAPDSLPANA*
Ga0136449_1034263881	3300010379	Peatlands Soil	AMKIYVLLMLIGVIVAFSYLPSFRRAKPVPPAPPDSLPA*
Ga0136449_1036551202	3300010379	Peatlands Soil	MKIYVLLMLIGVIVAFSYLPSFRRAKPVPPAPPDSV
Ga0181533_10340641	3300014152	Bog	AMKIYVLLTLIGVIVAFSYLPRFGRAKPVPPAPPDSVPA*
Ga0181532_106305241	3300014164	Bog	MKIYVLLMLIGVVVAFSYLPSFGRAKAVPPAPPDSVPG*
Ga0181523_101244954	3300014165	Bog	VLLMLIGVIVGFSQLPIRRQTKAAAPMPSDPVAASIRG*
Ga0181526_108320802	3300014200	Bog	MKIYVLLMLIGVIVGFSQLPIRRQTKAAAPMPSDPVAASIRG*
Ga0181526_108932951	3300014200	Bog	STQAMKIYVLLMLIGVIVGFSYLPSFGRTKPVPPTPPDSVPA*
Ga0182018_100226114	3300014489	Palsa	MKIYVLLMLIGVIVGFSYIPNRRPKPAAPASPDSVPANA*
Ga0182015_100186536	3300014495	Palsa	MKIYVLLMLIGVIVSFSYIPNRQPKPAAPASPDSVPANA*
Ga0182024_100555417	3300014501	Permafrost	MKIYVLLMLIGLIVGFSYIPNRQPKPAAPASPDSVPANA*
Ga0182024_101311614	3300014501	Permafrost	MKIYVLLMLISVIVGISYLPSRIPSKQVEPVPPDSLPA*
Ga0187802_100301811	3300017822	Freshwater Sediment	MKIYVLLMLIGVIVAFSYLPSFGRAKPVPPAPPDSVPA
Ga0187856_100046020	3300017925	Peatland	MKIYVLMMLIGVIVGFSHVPSRGQAKAAAPVPPDSVPA
Ga0187806_13878881	3300017928	Freshwater Sediment	MKIYVLLMLIGVIVASSYLPSFGRAKPVPPAPPDSVPA
Ga0187849_10201874	3300017929	Peatland	MKIYVLLTLIGVIVAFSYLPRFGRAKPVPPAPPDSVPA
Ga0187877_10569282	3300017931	Peatland	MKIYVLLMLISVIVGFSYLPGRRQSKAAAPVSPDSVPANA
Ga0187801_100270564	3300017933	Freshwater Sediment	MKIYVLLMLIGVIVAFSYLPSFGRAKPVPLASPDSMPA
Ga0187803_100441571	3300017934	Freshwater Sediment	MKIYVLLMLIGVIVAFSHVPSFGRAKPVPPAPPDSVPA
Ga0187821_103621901	3300017936	Freshwater Sediment	MKIYVLFLLISVIVGFSYIPRRNYSKPAEPAAPDSLPANA
Ga0187879_100375764	3300017946	Peatland	MKIYFLLMLISVIVGFSHAAGRSAKRPAPVPGDSLPV
Ga0187879_101496712	3300017946	Peatland	MKIYVLLMLIGVIVGFSYIPHRQPKPAAPASPDSVPANA
Ga0187879_102273202	3300017946	Peatland	MKIYVLMMLIGVIVGFSHVPSRGRAKAAAPVPPDSVPA
Ga0187817_108285152	3300017955	Freshwater Sediment	MKIYVLLMLIGVIVAFSYLPSFGRAKPVPPASPDSMPA
Ga0187779_110305242	3300017959	Tropical Peatland	MKIYVLLMLIGVIVGFSYIPNRGQRKETAPVPPDSVPA
Ga0187778_103982402	3300017961	Tropical Peatland	MKIYVLLMLISVIVGFAHAPRHGGAKKAVPARPDSLPA
Ga0187783_102231393	3300017970	Tropical Peatland	MKIYVLLMLISVIVGFSYLPRASRAKQPETPAPDSVPANV
Ga0187783_107587701	3300017970	Tropical Peatland	MKIYVLLMLIGIIVAFSQLPIRRQAKAPASVSPDSIAASV
Ga0187781_101020771	3300017972	Tropical Peatland	MKIYVLFMLISVILGFSYLPSLGRAKAAAPAPADSM
Ga0187781_102392052	3300017972	Tropical Peatland	MKICLLLMLIGVIVGISYLPGRRQADAAAPIPPDSVPVNV
Ga0187781_112251651	3300017972	Tropical Peatland	MKIYVLLMLIGIIVAFSQLPIRRQAKVAAPGSPDSIAASV
Ga0187777_105502752	3300017974	Tropical Peatland	MKIYVLLMLIGVIVSFSYVPLRRAKPLSGPSPDSIPS
Ga0187777_114712462	3300017974	Tropical Peatland	MKIYVLFLLISVIVGFSYIPSRNRAKPAEPAGPDSLPANA
Ga0187782_100730292	3300017975	Tropical Peatland	MKIYLLMVLIGAIVGFSQLAVRRQSKAAAAIASDSVTARA
Ga0187782_115429142	3300017975	Tropical Peatland	MKIYVLFMLISVILGFSYLPGLGRAKAAAPAPADSMPV
Ga0187865_13069422	3300018004	Peatland	AMKIYMLLTLIGVIVAFSYLPRFGRAKPVPPAPPDSVPA
Ga0187872_100961423	3300018017	Peatland	MKIYVLLMLIGVIVGFSYLPSFGRAKPVPPTPPDSVPA
Ga0187864_102750131	3300018022	Peatland	AEWNGGSAQAMKIYVLLTLIGVIVAFSYLPRFGRAKPVPPAPPDSVPA
Ga0187867_104199952	3300018033	Peatland	MKIYMLFMLISVIVGFSYLPSFHRAKPVPPAPPDSVPA
Ga0187883_101759302	3300018037	Peatland	MKIYVLLMLISVIVGFSYLPGRRQSKAAAPVSPNSVPANA
Ga0187855_100207124	3300018038	Peatland	MKIYVLGMLISVIVGFSYIPRKNHAKQAEAATPDSLPANA
Ga0187855_101910752	3300018038	Peatland	MKIYVLLMLIGVIVGFSYIPNRRPKPAAPASPDSVPANA
Ga0187859_101339362	3300018047	Peatland	MKIYFLLMLISVIVGFSYLPGRRQSKAAAPVSPNSVPANA
Ga0187858_104134462	3300018057	Peatland	MKIYVLLMLIGVIVGFSYLPSFGRTKPVPPTPPDSVPA
Ga0187766_105096052	3300018058	Tropical Peatland	MKIYVLFLLISVIVGFSYIPGRKRAKPAEPAAPDSLPANA
Ga0187784_100116101	3300018062	Tropical Peatland	MKICLLLMLIGVIVGISYLPGRRQADAASPIPPDSVPVNV
Ga0187784_103414542	3300018062	Tropical Peatland	MKIYVLLMLIGIIVTFSQLPIRRQAKATAPVSSDSIAASV
Ga0187784_104123382	3300018062	Tropical Peatland	MKIYVLLMLISVIVGFSHAPRQGRAKKAVPARPDSLPA
Ga0187784_105205462	3300018062	Tropical Peatland	MKIYVLFMLISVILGFSYLPGFGRAKAAAPTPADSIPA
Ga0187784_114941912	3300018062	Tropical Peatland	MKIYVLLMLIGVIVAFSYLPSFGREKPVPPAPPDSVPA
Ga0187772_100238074	3300018085	Tropical Peatland	MKIYVLLILIGAIVSMSYIPTRQTKPAAAPSPDTVPANA
Ga0187772_104135482	3300018085	Tropical Peatland	MKIYVLLMLIGIIVTFSQLPIRRQAKAPAPVSSDSIAASV
Ga0187770_103160712	3300018090	Tropical Peatland	MKIYVLLMLIGVIVGFSYIPNRGQRKETAPVPPNSVPA
Ga0210395_100075467	3300020582	Soil	MKIYVLLMLIGIIVAFSQLPIRYRAKAPAPVSSDSIAASV
Ga0210385_101382382	3300021402	Soil	MKIYVLGMLISVIVGFSYIPRKNHTKQAEAATPDSLPANA
Ga0208686_10481602	3300025500	Peatland	MKIYMLLTLIGVIVAFSYLPRFGRAKPVPPAPPDSVPA
Ga0209007_10237262	3300027652	Forest Soil	MKIYVLLMLISVIVGFSYFPGRKQSTPPTPLPSDSVPA
Ga0209447_101261022	3300027701	Bog Forest Soil	MKIYALFMLIGVIVGFSYLPIRRQTKVATSTASDPVIVSIRG
Ga0209655_100113482	3300027767	Bog Forest Soil	MKIYALFMLIGVIVGFSYLPIRRQTKVVTSTASDPVIVSIRG
Ga0209772_101249402	3300027768	Bog Forest Soil	MKIYVLLMLIGIIVGFSYLPLRRQTKVAAPLPSEPAAVSIRG
Ga0209810_10269415	3300027773	Surface Soil	MKIYMLMLLIGVIVGLSYLPLRGRTKPAGTAPPDSVPA
Ga0209517_104998391	3300027854	Peatlands Soil	MKIYVLLMLIGVIVAFSYLPSFRRAKPVPPAPPDSLPA
Ga0209167_101232912	3300027867	Surface Soil	MKIYVLLMLIGVIVSMSYIPVRRAKPTATPEPDSVPANG
Ga0209167_107816022	3300027867	Surface Soil	MKIYALLMLIGVIVSMSYIPVRRAKPAATPAPDSLPANS
Ga0209624_101217492	3300027895	Forest Soil	MKIYVLLMLIGVIVGFSQLPIRRPVKAPAPVAPDSIAARV
Ga0209062_13082191	3300027965	Surface Soil	MKIYMLLMLISVIVGFSYLPSRRRSKEPTPVPPEPVPAL
Ga0209168_101660252	3300027986	Surface Soil	MKIYVLWMLISVIVGFSYIPRKNHAKRAEAAAPDSLPANA
Ga0316363_104315122	3300030659	Peatlands Soil	MKIYVLLTLIGVIVAFSYLPRFGRAKPVPPAPPDSVPE
Ga0307374_100347035	3300031670	Soil	MKIYVLLMLIGVIVSMSYIPIRRAKPTATPAPDSVPANG
Ga0310686_1006346972	3300031708	Soil	MKIYVLLMLIGVIVSMSYIPIRRAKPTATPEPDSLPANG
Ga0310686_1070466302	3300031708	Soil	MKIYVLGMLISVIVGFSYIPRKNHAKRAEPAAPDSLPANA
Ga0310686_1118405781	3300031708	Soil	MKIYVLLMLIGVIVSMSYIPIRRPKPTATPAPDSVPANG
Ga0310686_1158172872	3300031708	Soil	KIYVLLMLIGVIVSMSYIPIRRAKPTATPEPDSVPANG
Ga0310686_1187726432	3300031708	Soil	MKIYVLLMLIGVIVGFSQLPIRRAAKAPPPVAPDSIAARV
Ga0311301_102471122	3300032160	Peatlands Soil	MKIYVLLMLIGIIVGFSQLPIRRQPKVAAPAPSDSVAASIRG
Ga0311301_103570675	3300032160	Peatlands Soil	MKIYVLLMLIGIIVAFSYLPRFGRAKPVPPAPPDSLPA
Ga0311301_104461562	3300032160	Peatlands Soil	MKIYVLLMLIGVIVAFSYLPSFRRAKPVPPAPPDSVPA
Ga0335085_102473782	3300032770	Soil	MKIYVLFLLISVIVGFSYIPSRNRVKPAEPAAPGSLPANA
Ga0335079_110328092	3300032783	Soil	MKIYVLFLLISVIVGFSYIPSRNRAKPAEPAAPDSLPANA
Ga0335078_110856241	3300032805	Soil	MKIYVLFMLIGVIVGFSCLPSLGRAKPAPPDSVPA
Ga0335081_114865712	3300032892	Soil	MKIYVLLMLIGVIVSMSYIPVRQAKPTATPSPDSVPANV
Ga0335074_111423702	3300032895	Soil	MKIYLLLMLIGVIVGFSHLPLRRRTKTPAPVSPDSATALSEI
Ga0335075_103885531	3300032896	Soil	MKIYLLLMLIGVIVGFSHLPLRRRAKTPAPVSPDSATALSEI
Ga0335076_106527692	3300032955	Soil	MKIYVLLMLIGIIVGFSQLPIRRQAKAPAPVPPASVAASL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078131

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences