Metagenome / Metatranscriptome Family F078094

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F078094
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	62 residues
Representative Sequence	MDSEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLSRTEPSTNRIARPAKAL
Number of Associated Samples	49
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.59 %
% of genes near scaffold ends (potentially truncated)	29.31 %
% of genes from short scaffolds (< 2000 bps)	89.66 %
Associated GOLD sequencing projects	48
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (82.759 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (37.931 % of family members)
Environment Ontology (ENVO)	Unclassified (75.862 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (77.586 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.44% β-sheet: 0.00% Coil/Unstructured: 50.56%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF01339	CheB_methylest	31.90
PF08241	Methyltransf_11	12.07
PF03705	CheR_N	6.90
PF13596	PAS_10	3.45
PF13185	GAF_2	3.45
PF01042	Ribonuc_L-PSP	1.72
PF00535	Glycos_transf_2	0.86
PF01068	DNA_ligase_A_M	0.86
PF01739	CheR	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	63.79
COG1352	Methylase of chemotaxis methyl-accepting proteins	Signal transduction mechanisms [T]	15.52
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.72
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.86
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.86
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.76 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.76 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.76 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.76 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.72 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	23.28 %
Unclassified	root	N/A	17.24 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.24 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	8.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.72 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.72 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.24 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	8.62 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.72 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.72 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.24 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	8.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.72 %
Microvirga vignae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	0.86 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.24 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	8.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.72 %
Bradyrhizobium sp. KB893862 SZCCT0404	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. KB893862 SZCCT0404	0.86 %
Microvirga vignae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	0.86 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000156\|NODE_c0462200	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10046212	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10111340	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1015903	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1013752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1141	Open in IMG/M
3300004629\|Ga0008092_11259134	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300004633\|Ga0066395_10154457	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300004633\|Ga0066395_10324300	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300004633\|Ga0066395_10858185	Not Available	548	Open in IMG/M
3300005332\|Ga0066388_100304438	All Organisms → cellular organisms → Bacteria → Proteobacteria	2239	Open in IMG/M
3300005332\|Ga0066388_100308555	All Organisms → cellular organisms → Bacteria → Proteobacteria	2228	Open in IMG/M
3300005332\|Ga0066388_100455002	All Organisms → cellular organisms → Bacteria → Proteobacteria	1921	Open in IMG/M
3300005332\|Ga0066388_101094825	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300005332\|Ga0066388_101519682	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300005332\|Ga0066388_101639324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1134	Open in IMG/M
3300005332\|Ga0066388_101690865	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300005332\|Ga0066388_102203749	All Organisms → cellular organisms → Bacteria → Proteobacteria	994	Open in IMG/M
3300005332\|Ga0066388_102573168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	926	Open in IMG/M
3300005332\|Ga0066388_103651214	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300005332\|Ga0066388_103761311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	774	Open in IMG/M
3300005332\|Ga0066388_104571462	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300005332\|Ga0066388_104960574	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300005332\|Ga0066388_105693373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	630	Open in IMG/M
3300005332\|Ga0066388_106041212	Not Available	612	Open in IMG/M
3300005363\|Ga0008090_10059227	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300005363\|Ga0008090_10071047	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300005363\|Ga0008090_10071365	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300005363\|Ga0008090_10250353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1398	Open in IMG/M
3300005713\|Ga0066905_100433972	All Organisms → cellular organisms → Bacteria → Proteobacteria	1075	Open in IMG/M
3300005713\|Ga0066905_100668571	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300005713\|Ga0066905_100761689	Not Available	836	Open in IMG/M
3300005713\|Ga0066905_100944133	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300005713\|Ga0066905_101014055	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300005713\|Ga0066905_101223324	Not Available	672	Open in IMG/M
3300005713\|Ga0066905_101308183	Not Available	652	Open in IMG/M
3300005713\|Ga0066905_102244083	Not Available	509	Open in IMG/M
3300005764\|Ga0066903_100872589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1623	Open in IMG/M
3300005764\|Ga0066903_101722373	Not Available	1194	Open in IMG/M
3300005764\|Ga0066903_103681839	Not Available	825	Open in IMG/M
3300005764\|Ga0066903_104586049	Not Available	736	Open in IMG/M
3300005764\|Ga0066903_105051699	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300005764\|Ga0066903_107462584	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300005764\|Ga0066903_108066470	Not Available	540	Open in IMG/M
3300005937\|Ga0081455_10479920	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300009792\|Ga0126374_10070182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1870	Open in IMG/M
3300009792\|Ga0126374_10319757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1050	Open in IMG/M
3300009792\|Ga0126374_10635866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	793	Open in IMG/M
3300010043\|Ga0126380_10938799	Not Available	722	Open in IMG/M
3300010043\|Ga0126380_11493474	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300010046\|Ga0126384_10652509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	927	Open in IMG/M
3300010046\|Ga0126384_10810609	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300010046\|Ga0126384_10919816	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300010046\|Ga0126384_11122319	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300010048\|Ga0126373_10052873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3617	Open in IMG/M
3300010048\|Ga0126373_10176491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2052	Open in IMG/M
3300010048\|Ga0126373_10891067	Not Available	953	Open in IMG/M
3300010048\|Ga0126373_11150862	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300010358\|Ga0126370_11473115	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300010358\|Ga0126370_12585451	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300010359\|Ga0126376_10470457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1154	Open in IMG/M
3300010359\|Ga0126376_10479012	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300010359\|Ga0126376_12178422	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300010360\|Ga0126372_10172579	All Organisms → cellular organisms → Bacteria	1763	Open in IMG/M
3300010360\|Ga0126372_11052014	Not Available	829	Open in IMG/M
3300010360\|Ga0126372_11453653	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300010360\|Ga0126372_11503454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	709	Open in IMG/M
3300010360\|Ga0126372_11839429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	649	Open in IMG/M
3300010361\|Ga0126378_10432041	All Organisms → cellular organisms → Bacteria → Proteobacteria	1431	Open in IMG/M
3300010361\|Ga0126378_11746281	Not Available	707	Open in IMG/M
3300010362\|Ga0126377_11262633	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300010362\|Ga0126377_12444045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	598	Open in IMG/M
3300010366\|Ga0126379_11368792	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300010376\|Ga0126381_104791520	Not Available	520	Open in IMG/M
3300010398\|Ga0126383_10791402	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300010398\|Ga0126383_13129277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	540	Open in IMG/M
3300012204\|Ga0137374_11131995	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300012948\|Ga0126375_10212161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	1281	Open in IMG/M
3300012948\|Ga0126375_10590890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	846	Open in IMG/M
3300012948\|Ga0126375_11568445	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300012948\|Ga0126375_12057668	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300012971\|Ga0126369_11638384	Not Available	733	Open in IMG/M
3300012971\|Ga0126369_12190319	Not Available	640	Open in IMG/M
3300012971\|Ga0126369_13637323	Not Available	505	Open in IMG/M
3300016319\|Ga0182033_11570929	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300021444\|Ga0213878_10152192	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300021560\|Ga0126371_10318378	Not Available	1686	Open in IMG/M
3300021560\|Ga0126371_10723647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. KB893862 SZCCT0404	1143	Open in IMG/M
3300021560\|Ga0126371_10876368	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300021560\|Ga0126371_11024624	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300021560\|Ga0126371_12359612	Not Available	643	Open in IMG/M
3300021560\|Ga0126371_12370232	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300027654\|Ga0209799_1008168	All Organisms → cellular organisms → Bacteria	2212	Open in IMG/M
3300027874\|Ga0209465_10146946	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300031543\|Ga0318516_10002516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7625	Open in IMG/M
3300031543\|Ga0318516_10011185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4342	Open in IMG/M
3300031543\|Ga0318516_10140440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1384	Open in IMG/M
3300031544\|Ga0318534_10346411	All Organisms → cellular organisms → Bacteria → Proteobacteria	855	Open in IMG/M
3300031546\|Ga0318538_10070345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1757	Open in IMG/M
3300031564\|Ga0318573_10095113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1523	Open in IMG/M
3300031668\|Ga0318542_10707561	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300031713\|Ga0318496_10025987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2930	Open in IMG/M
3300031723\|Ga0318493_10343212	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300031747\|Ga0318502_10002181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7552	Open in IMG/M
3300031747\|Ga0318502_10004003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6066	Open in IMG/M
3300031747\|Ga0318502_11025894	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300031763\|Ga0318537_10169018	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300031780\|Ga0318508_1215529	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300031799\|Ga0318565_10385731	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300031859\|Ga0318527_10051255	All Organisms → cellular organisms → Bacteria	1608	Open in IMG/M
3300031894\|Ga0318522_10011473	All Organisms → cellular organisms → Bacteria	2685	Open in IMG/M
3300031942\|Ga0310916_10280389	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300031954\|Ga0306926_11787834	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300031959\|Ga0318530_10069111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1364	Open in IMG/M
3300032067\|Ga0318524_10131401	All Organisms → cellular organisms → Bacteria	1257	Open in IMG/M
3300032067\|Ga0318524_10257066	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300033289\|Ga0310914_10007554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7866	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.28%
Host-Associated	Host-Associated	0.86%
Engineered	Engineered	0.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.28%
Plants	Host-Associated → Plants	0.86%
Solid Waste	Engineered → Solid Waste	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.28%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.86%
Grass	Engineered → Solid Waste → Grass	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.10%
Loam	Environmental → Terrestrial → Soil → Loam	30.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.86%
Composting	Engineered → Solid Waste → Grass → Composting	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	30.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.14%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	4.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.86%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.86%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	37.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	30.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.97%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.86%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.86%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.86%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.86%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
NODE_04622002	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MDVEHRKLVNKTRELIETTRCEISQLREEIELARNTVDRSQRILSRAKPPANRRPKRAKSL*
AF_2010_repII_A1DRAFT_100462122	3300000597	Forest Soil	PSGANPMDSEHRDLVTKTRALIEITRREISQLREEIDSARTTVDRTQRLLSRTEPSTNRIAKPAKAL*
AF_2010_repII_A1DRAFT_101113401	3300000597	Forest Soil	MDSEHHSLMIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPSTPRIASVRRKARPRR*
AP72_2010_repI_A10DRAFT_10159032	3300000651	Forest Soil	MDFEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRXARPAKAL
AP72_2010_repI_A100DRAFT_10137522	3300000837	Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPSTRRIASVRRKARPRQ*
Ga0008092_112591341	3300004629	Tropical Rainforest Soil	MDSEHRDLVTKTRALIETTRREISQLREEIESARTTVDRAQRFLSRTEPSTRRIARPRQEPRAGQ*
Ga0066395_101544571	3300004633	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIDSARTTVDRAQRLLSRTEPSTNRIARPAKAL*
Ga0066395_103243001	3300004633	Tropical Forest Soil	MDSEHRDRMTKTWALIETTRREISQLREEIESARGTIDRTQRLLSRTQAPRQARVRRVARARQ*
Ga0066395_108581851	3300004633	Tropical Forest Soil	MDSEHRDLMTKTRALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIARRGQEPRAGQ*
Ga0066388_1003044382	3300005332	Tropical Forest Soil	MNSEHRELLFKTRALIERTRHEISQLREEIDSARTTIDRAQRLLSRTEPSTNRIARPAKAL*
Ga0066388_1003085552	3300005332	Tropical Forest Soil	MDSEHRNLMTKARALIETSRREISELREEIESARNTVDRSQQLLLRTEPSLRRSPKPAKAL*
Ga0066388_1004550022	3300005332	Tropical Forest Soil	MDSAHRELLFKTRAMIETTRREISQLRDEIQSARDTIDQTQRLLSRSKPSTRRIARLRKDARAGQ*
Ga0066388_1010948252	3300005332	Tropical Forest Soil	MESEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLSRTEPSTNRIAKPAKAL*
Ga0066388_1015196822	3300005332	Tropical Forest Soil	VDGADPMDSKHREVVAKTRALIETTHREISQLREEIESAQDTVDRAQRLLSRTEPSADRMARPAKAL*
Ga0066388_1016393242	3300005332	Tropical Forest Soil	MDAEQQARVIKTRALIETTRHEISQLREEIGLAWNTVNQSQKLLSRTEPSTQRLPKPSKPL*
Ga0066388_1016908651	3300005332	Tropical Forest Soil	MDTKHRDVVTKTRALIETTRREISQLQEEIESARATVDQTQRLLSRTEPSNRIARPAKAL
Ga0066388_1022037492	3300005332	Tropical Forest Soil	MDSEHRDRMAKTWALIETTRREISQLREEIESARGTIDRTQRLLSRTQAPRQARVRRVARARQ*
Ga0066388_1025731682	3300005332	Tropical Forest Soil	MTPLKPSGASPMDSKHRDLMIQTRALIETTRREISQLREEIESARNTVDRAQRVLSRTEPSTNRIAGPAKAL*
Ga0066388_1036512141	3300005332	Tropical Forest Soil	MDSDHRDLMTKTQALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIVRRRQEPRAGQ*
Ga0066388_1037613111	3300005332	Tropical Forest Soil	MMLLEYLGSRLMDSEHQTLLIQTRALIETTRHEISQLREEIQSTWNTIDRSQRLLSRTEPSTRRIARKARARQ*
Ga0066388_1045714622	3300005332	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNLITRPAKAL
Ga0066388_1049605742	3300005332	Tropical Forest Soil	MDSEHRDLMTKARALIETTRREISQLREEIESARNTVDRSQRLLSRTEPS
Ga0066388_1056933732	3300005332	Tropical Forest Soil	LIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPSTPRIASVQRKARPRQ*
Ga0066388_1060412121	3300005332	Tropical Forest Soil	MDGADPMDPKHRELVTKTRALIKTTRREISQLQEEIESARATVDQAQRLLSRTEPTMRRMARPAKSL*
Ga0008090_100592272	3300005363	Tropical Rainforest Soil	MESEHRDLVTKTRALIETTRREISQLREEIDSARATVDRAQRLLSRTEPSTNRIAKPAKAL*
Ga0008090_100710472	3300005363	Tropical Rainforest Soil	MDSEHHSLMIKTRALIETTRYEISQLREEIQSAWNTIDRSQRLLSRIEPSTRRIASARRKARPRQ*
Ga0008090_100713651	3300005363	Tropical Rainforest Soil	MDSEHRDRMTKTWALIETTRREISQLREEIESARGTIDRTQRLLSRTQAPREARVRRVARARQ*
Ga0008090_102503532	3300005363	Tropical Rainforest Soil	MDSEHRDLVTKTRALIEITRREISQLREEIDSARTTVDRTQRLLSRTEPSTNRIAKPAKAL*
Ga0066905_1004339722	3300005713	Tropical Forest Soil	MGADPLDAKHRELVTKTRALIETTHREISQLREEIESTQNIVDQAQRLLSRTEPSADRIARPAKAL*
Ga0066905_1006685712	3300005713	Tropical Forest Soil	MDSAHHDLMTKTRALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIARRGQE
Ga0066905_1007616892	3300005713	Tropical Forest Soil	MDSEHRNLMTKARALIETSRREISELREEIESARNTVDRSQQLLSRTEPSLRRSPKPAKAL*
Ga0066905_1009441332	3300005713	Tropical Forest Soil	MDSEHHSLMIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPSTPRIA
Ga0066905_1010140551	3300005713	Tropical Forest Soil	MDSEHRDLMTKARALIETTRREISELREEIESARNTVDRSQRLLSRTEPSTNRIPRPAKAL*
Ga0066905_1012233241	3300005713	Tropical Forest Soil	MDSQHRDLMTKTRALIETTRYEISQLREEIQSAWNTIDRSQRLLSRTEPATRRIARFRKEPRAGQ*
Ga0066905_1013081831	3300005713	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRSEISQLREEIQSAWTTIDRSQRLLSRTARGASRIARFRKEPRARQ*
Ga0066905_1022440831	3300005713	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLSRTEPSTNRIARPAKAL*
Ga0066903_1008725892	3300005764	Tropical Forest Soil	MDTKHRDVVTKTRALIETTRREISQLHEEIESARATVDQTQRLLSRTEPSNRTARPAKAL
Ga0066903_1017223733	3300005764	Tropical Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLHEEIQSAWNTIDQSQRLLSRTEPSTRHIARPWQEPRAGQ*
Ga0066903_1036818391	3300005764	Tropical Forest Soil	MEADLMDSEHRDLVIKSRELIETTRHEISQLREEIELAWKTVDQSQRLLSRVQPFTQRIPKSSKAL*
Ga0066903_1045860492	3300005764	Tropical Forest Soil	MDSRQRELVTKTRALIETTRREVSQLHDEIESARDTIDQTQRLLSRDPSRRRIARVRREARAGRY*
Ga0066903_1050516992	3300005764	Tropical Forest Soil	YRDAARMTWERILVDGADPMDSKHREVVAKTRALIETTHREISQLREEIESAQDTVDRAQRLLSRTEPSADRMARPAKAL*
Ga0066903_1074625842	3300005764	Tropical Forest Soil	MDTMHRKVVTKTRALIKTTRREISQLQEEIESARATVNQAQRLLSRTEPTMRRMARPAKAL*
Ga0066903_1080664701	3300005764	Tropical Forest Soil	MDSGNRKLVTKTRALIETTRREISQLRDEIESARDTIDRTQRLLSRTQAPGRRIARVRRVARAGR*
Ga0081455_104799201	3300005937	Tabebuia Heterophylla Rhizosphere	SNEMGADLMDGADPMDSKHREVVTKTRALIETTHREISQLREEIESTQNMVDQAQRLLSRTEPTMRRMARPAKAL*
Ga0126374_100701822	3300009792	Tropical Forest Soil	MDSEHLDLMTKTRALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIARRGQEPRAGQ*
Ga0126374_103197571	3300009792	Tropical Forest Soil	MDSEHRDLVIKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRIARPAKAL
Ga0126374_106358661	3300009792	Tropical Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLREEIQSAWNTIDRSQRLLSRTEPSTPRIASVRREARARQ*
Ga0126380_109387992	3300010043	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRI
Ga0126380_114934741	3300010043	Tropical Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPST
Ga0126384_106525092	3300010046	Tropical Forest Soil	MDSEHHALLIKTRALIETTRHEISQLREEIQSAWNTIDRSQRLLSRTEPSAHHIAEPRQEPRGGQ*
Ga0126384_108106092	3300010046	Tropical Forest Soil	MDSRQRELVTKTRALIETTRREVSQLHDEIESARDTIDRTQRLLSRDPSMRRIARLRREARAGR*
Ga0126384_109198161	3300010046	Tropical Forest Soil	MDSQHRDLVTKTRALIETTRREILQLREEIDSARTTIDRAQRLLSRTEPSTNRIARPAKAL*
Ga0126384_111223191	3300010046	Tropical Forest Soil	MDSAHRELLFKTRAMIETTRREISQLRDEIQSARDTIDQTQRLLSRSKPSTRRIARLRKKEARAGQ*
Ga0126373_100528732	3300010048	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRRDILQLREEIESARTTVDRAQRVLSRTEPSAEPVPKLAKAL*
Ga0126373_101764915	3300010048	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLGEEIESARTTVDRTQRLLSRTEPSNRIARPAKAL
Ga0126373_108910671	3300010048	Tropical Forest Soil	SEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRIARPAKAL*
Ga0126373_111508622	3300010048	Tropical Forest Soil	MDSEHRDLVTKTRALIEITRREISQLREEIDSARTTVDRAQRLLSRTEPSTNRIAKPAKAL*
Ga0126370_114731151	3300010358	Tropical Forest Soil	MDSKHREVVAKTRALIETTHREISQLREEIESAQDTVDRAQRLLSRTEPSADRMARPAKAL*
Ga0126370_125854512	3300010358	Tropical Forest Soil	MDSQHRDLVTKTRALIETTRREILQLREEIDSARTTVDRAQRLLSRTEPSTNRIARPAKAL*
Ga0126376_104704573	3300010359	Tropical Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPSTPRIASVRREARARQ*
Ga0126376_104790122	3300010359	Tropical Forest Soil	MDSKHREVVTKTRALIETTHREISQLREEIESTQNMVDQAQRLLSRTEPSADRIARPAKAL*
Ga0126376_121784221	3300010359	Tropical Forest Soil	MDSEHLDLMTKTRALIETTRREIWQLREEIQSAWNTIDRSQRLLSRTESAAHRIARRGQEPRAGQ*
Ga0126372_101725792	3300010360	Tropical Forest Soil	MGADPLDAKHRELVTKTRALIETTHREISQLREEIESTQNIVDQAQRLLSRTGPSADRIARPAKAL*
Ga0126372_110520141	3300010360	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRAQRLLSRTEPSAEPVPKLAKAL*
Ga0126372_114536532	3300010360	Tropical Forest Soil	MDSKHREVVTKTRALIETTHREISQLREEIESTQNMVGQAQRLLSRTEPSNRMARLAKAL
Ga0126372_115034542	3300010360	Tropical Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPSTPRIASVQRKARPRQ*
Ga0126372_118394291	3300010360	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRIAR
Ga0126378_104320413	3300010361	Tropical Forest Soil	MESEHRDLVTKTRALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIARRGQEPRAGQ*
Ga0126378_117462811	3300010361	Tropical Forest Soil	RDLVTKTRALIETTRREILQLREEIESARTTVDRAQRLLSRTEPSAEPVPKLAKAL*
Ga0126377_112626332	3300010362	Tropical Forest Soil	MDTKHRDVVTKTRALIETTRREISQLHEEIESARATVDRAQRLLSRTEPSADRMARPAKAL*
Ga0126377_124440452	3300010362	Tropical Forest Soil	EHHSLLIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPSTRRIASARRKARPRQ*
Ga0126379_113687921	3300010366	Tropical Forest Soil	MDSQHRDLVTKTRALIETTRREILQLREEIDSARTTVDCAQRLLSRTEPSTNRIARPAKAL*
Ga0126381_1047915201	3300010376	Tropical Forest Soil	MESEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLSRTEQSTNRIARPAKAL*
Ga0126383_107914022	3300010398	Tropical Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLREEIASAWNTIDRSQQLLSRTEPSTRRIARKARARQ*
Ga0126383_131292772	3300010398	Tropical Forest Soil	RGAVMDSEHHSLLIKTRALIETTRYEISQLREEIQSAWNTIDRSQRLLSRTEPSTPRIASVRREARARQ*
Ga0137374_111319951	3300012204	Vadose Zone Soil	MDSEHRQLVTKTRALIERTRREISQLREEIESARTTVDRAHRLLSPTEPSTHRISRAKAL
Ga0126375_102121613	3300012948	Tropical Forest Soil	MDSEHRDLMTKARALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIARRGQEPRAGQ*
Ga0126375_105908902	3300012948	Tropical Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLREEIQSAWNTIDRSQRLLSRTEPSTRRIASVRRKARPRQ*
Ga0126375_115684451	3300012948	Tropical Forest Soil	MDTKHRDVVTKTRALIETTRREISQLHEEIESARATVDQTQRLLSRTEPSNRIARPAKAL
Ga0126375_120576682	3300012948	Tropical Forest Soil	MDSEHLDLMTKTRALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIARRG
Ga0126369_116383842	3300012971	Tropical Forest Soil	PMDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRAQRLLSRTEPSAEPVPKLAKAL*
Ga0126369_121903192	3300012971	Tropical Forest Soil	MDSEHRDRMTKTWALIETTRREISQLREEIESARGTIDRTQRLLSRTQAPREARVRRVAR
Ga0126369_136373232	3300012971	Tropical Forest Soil	ALLFKTRALIETIRSEISQLRDEIQSAWNTIDRSQKLLSRTEPATRRIARRRKEPRAAQ*
Ga0182033_115709291	3300016319	Soil	SRASSMDSDHRDLVTKTRALIDTTRREILQLGADIESARTTVDRTQRLLSRTEPSNRIARPAKAL
Ga0213878_101521921	3300021444	Bulk Soil	MDPGHRDLVIRTRALIEITRREISQLREEIDSARTTVDRAQRLLSRTEPSTNRIAKPAKA
Ga0126371_103183782	3300021560	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRIARPAKAL
Ga0126371_107236471	3300021560	Tropical Forest Soil	RRPLELSGADHMDSEHRDLMTKTRALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIARRGQEPRAGQ
Ga0126371_108763682	3300021560	Tropical Forest Soil	MDSEHRDLVIKTRALIETTRREILELREEIESARTTVDRTQRLLSRTEPS
Ga0126371_110246241	3300021560	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIDSARTTVDRAQRLLSRTEPSTNRIAKPAKA
Ga0126371_123596121	3300021560	Tropical Forest Soil	MNSEHRELLFKTRAMIETTRREISQLRDEIQSARDTIDQTQRLLSRSKPSTRRIARLRKDARAGQ
Ga0126371_123702321	3300021560	Tropical Forest Soil	MDSEHRDRMTKTWALIETTRREISQLREEIESARGTIDRTQRLLSRTQAPR
Ga0209799_10081682	3300027654	Tropical Forest Soil	MDTEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRIARPAKAL
Ga0209465_101469462	3300027874	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIDSARTTVDRAQRLLSRTEPSTNRIARPAKA
Ga0318516_100025163	3300031543	Soil	MDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRAQRLLSRTEPSAEPVPKLAKA
Ga0318516_100111854	3300031543	Soil	MESEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLLRTEPSTNRIARPAKA
Ga0318516_101404402	3300031543	Soil	MDSRQRELLFKTRALIETTRREISQLRDEIDSARTTVDQSQRLLSRTEPSMRRVPAKTL
Ga0318534_103464112	3300031544	Soil	MDSKHRELLLKTRTLIERTRREISQMHGEIESARDTVDRAQRLLSRTEPSSRRIARRAKA
Ga0318538_100703451	3300031546	Soil	MDSKHRELLLKTRTLIERTRREISQMHGEIESARDTFDRAQRLLSRTEPSSRRIARRAKA
Ga0318573_100951133	3300031564	Soil	MDSRQRELLFKTRALIETTRREISQLRDEIDSAQTTVDQSQRLLSRTEPSMRRVPAKTL
Ga0318542_107075611	3300031668	Soil	GLMDSKHRELLLKTRTLIERTRREISQMHGEIESARDTFDRAQRLLSRTEPSSRRIARRAKAL
Ga0318496_100259872	3300031713	Soil	MESEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLSRTEPSTNRIARPAKA
Ga0318493_103432121	3300031723	Soil	MDSRQRELLFKTRALIETTRREISQLRDEIDSARTTVDQSQRLLSRTEPSMRRVPAKT
Ga0318502_100021817	3300031747	Soil	MESEHRDLVTKTRALIETTRREISQLREEIDLARTTVDRAQRLLSRTEPSTNRIARPAKA
Ga0318502_100040039	3300031747	Soil	PMDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRAQRLLSRTEPSAEPVPKLAKAL
Ga0318502_110258942	3300031747	Soil	SPMDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRIARPAKAL
Ga0318537_101690182	3300031763	Soil	MDSKHRELLLKTRTLIERTRREISQMHGEIESARDTVDRAQRLLSRTEPS
Ga0318508_12155292	3300031780	Soil	TGANPMESEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLLRTEPSTNRIARPAKAL
Ga0318565_103857312	3300031799	Soil	LDRRRDSARTRDVSLMDSRQRELLFKTRALIETTRREISQLRDEIDSARTTVDQSQRLLSRTEPSMRRVPAKTL
Ga0318527_100512551	3300031859	Soil	MYSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRAQRLLSRTEPSAEPVPKLAKA
Ga0318522_100114732	3300031894	Soil	NPMESEHRDLVTKTRALIETTRREILQLREEIESARTTVDRAQRLLSRTEPSAEPVPKLAKAL
Ga0310916_102803891	3300031942	Soil	SMDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRIARPAKA
Ga0306926_117878342	3300031954	Soil	MDSEHRDLMTKTRALIEITRREISQLREEIESARNTVDQSQRLLSRTQAPRHHRAGE
Ga0318530_100691112	3300031959	Soil	MDSRQRELLFKTRALIETTRREISQLRDEIDSARTTVDQSQRLLSRTEPSMRRVSAKTL
Ga0318524_101314011	3300032067	Soil	VTPLEFRDVGLMDSKHRELLLKTRTLIERTRREISQMHGEIESARDTVDRAQRLLSRTEPSSRRIARRAKAL
Ga0318524_102570661	3300032067	Soil	SEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLLRTEPSTNRIARPAKAL
Ga0310914_100075548	3300033289	Soil	MDSKHRELLLKTRTLIERTRREISQMHGEIESARDTFDRAQRLLSRTEPSSRRI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078094

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences