Metagenome Family F078042

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078042
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	67 residues
Representative Sequence	LDILDLASCGGCYNPCHSDSLVESQSVGSFAGLLLEVSDYRHKDLYLYGSFELMVLFFEPTTVCGLMCQN
Number of Associated Samples	59
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	35.14 %
% of genes near scaffold ends (potentially truncated)	76.72 %
% of genes from short scaffolds (< 2000 bps)	95.69 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (81.034 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere (93.966 % of family members)
Environment Ontology (ENVO)	Unclassified (95.690 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant surface (95.690 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.08% β-sheet: 0.00% Coil/Unstructured: 45.92%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF03732	Retrotrans_gag	3.45

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
All Organisms	root	All Organisms	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
cellular organisms	root	All Organisms → cellular organisms	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	18.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
BOP clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade	8.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Oryzoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae	8.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Oryzeae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae	8.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Oryzinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae	8.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Oryza	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza	8.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.03 %
Oryza sativa	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza → Oryza sativa	2.59 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300013297\|Ga0157378_11167421	Not Available	809	Open in IMG/M
3300015267\|Ga0182122_1014518	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza	778	Open in IMG/M
3300015269\|Ga0182113_1026789	Not Available	737	Open in IMG/M
3300015274\|Ga0182188_1026148	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza	631	Open in IMG/M
3300015274\|Ga0182188_1049347	Not Available	536	Open in IMG/M
3300015276\|Ga0182170_1052677	Not Available	564	Open in IMG/M
3300015282\|Ga0182124_1054207	Not Available	569	Open in IMG/M
3300015283\|Ga0182156_1057948	Not Available	570	Open in IMG/M
3300015283\|Ga0182156_1070212	Not Available	538	Open in IMG/M
3300015286\|Ga0182176_1020962	Not Available	781	Open in IMG/M
3300015287\|Ga0182171_1069456	Not Available	541	Open in IMG/M
3300015287\|Ga0182171_1070822	Not Available	538	Open in IMG/M
3300015287\|Ga0182171_1077384	Not Available	524	Open in IMG/M
3300015288\|Ga0182173_1045408	Not Available	607	Open in IMG/M
3300015288\|Ga0182173_1046568	Not Available	603	Open in IMG/M
3300015289\|Ga0182138_1057968	Not Available	572	Open in IMG/M
3300015289\|Ga0182138_1074848	Not Available	530	Open in IMG/M
3300015291\|Ga0182125_1009171	Not Available	972	Open in IMG/M
3300015291\|Ga0182125_1073023	Not Available	544	Open in IMG/M
3300015291\|Ga0182125_1079374	Not Available	531	Open in IMG/M
3300015294\|Ga0182126_1051512	Not Available	606	Open in IMG/M
3300015295\|Ga0182175_1055238	Not Available	600	Open in IMG/M
3300015296\|Ga0182157_1043169	Not Available	654	Open in IMG/M
3300015296\|Ga0182157_1096282	Not Available	514	Open in IMG/M
3300015298\|Ga0182106_1040743	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza	665	Open in IMG/M
3300015298\|Ga0182106_1066916	Not Available	575	Open in IMG/M
3300015299\|Ga0182107_1031261	Not Available	721	Open in IMG/M
3300015299\|Ga0182107_1062328	Not Available	590	Open in IMG/M
3300015299\|Ga0182107_1066010	Not Available	580	Open in IMG/M
3300015299\|Ga0182107_1086901	Not Available	533	Open in IMG/M
3300015299\|Ga0182107_1098618	Not Available	512	Open in IMG/M
3300015300\|Ga0182108_1088096	Not Available	534	Open in IMG/M
3300015300\|Ga0182108_1092622	Not Available	526	Open in IMG/M
3300015302\|Ga0182143_1060385	Not Available	595	Open in IMG/M
3300015302\|Ga0182143_1061390	Not Available	593	Open in IMG/M
3300015302\|Ga0182143_1104677	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	502	Open in IMG/M
3300015303\|Ga0182123_1041354	Not Available	647	Open in IMG/M
3300015304\|Ga0182112_1030733	Not Available	725	Open in IMG/M
3300015304\|Ga0182112_1082837	Not Available	543	Open in IMG/M
3300015304\|Ga0182112_1088538	Not Available	532	Open in IMG/M
3300015304\|Ga0182112_1104654	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	504	Open in IMG/M
3300015305\|Ga0182158_1059417	Not Available	597	Open in IMG/M
3300015305\|Ga0182158_1086156	Not Available	534	Open in IMG/M
3300015305\|Ga0182158_1086934	Not Available	532	Open in IMG/M
3300015305\|Ga0182158_1087709	Not Available	531	Open in IMG/M
3300015305\|Ga0182158_1099375	Not Available	511	Open in IMG/M
3300015307\|Ga0182144_1057153	Not Available	612	Open in IMG/M
3300015314\|Ga0182140_1049930	Not Available	651	Open in IMG/M
3300015322\|Ga0182110_1119293	Not Available	509	Open in IMG/M
3300015323\|Ga0182129_1074543	Not Available	576	Open in IMG/M
3300015323\|Ga0182129_1085160	Not Available	553	Open in IMG/M
3300015341\|Ga0182187_1086291	Not Available	679	Open in IMG/M
3300015341\|Ga0182187_1102005	Not Available	641	Open in IMG/M
3300015341\|Ga0182187_1184997	Not Available	517	Open in IMG/M
3300015341\|Ga0182187_1201175	Not Available	501	Open in IMG/M
3300015342\|Ga0182109_1103726	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza → Oryza sativa	671	Open in IMG/M
3300015344\|Ga0182189_1114536	Not Available	652	Open in IMG/M
3300015344\|Ga0182189_1145860	Not Available	598	Open in IMG/M
3300015344\|Ga0182189_1198416	Not Available	531	Open in IMG/M
3300015346\|Ga0182139_1155138	Not Available	601	Open in IMG/M
3300015346\|Ga0182139_1224061	Not Available	521	Open in IMG/M
3300015346\|Ga0182139_1226609	Not Available	518	Open in IMG/M
3300015351\|Ga0182161_1096922	Not Available	750	Open in IMG/M
3300015351\|Ga0182161_1151203	Not Available	632	Open in IMG/M
3300015351\|Ga0182161_1199470	Not Available	566	Open in IMG/M
3300015355\|Ga0182159_1267694	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	566	Open in IMG/M
3300017404\|Ga0182203_1091154	Not Available	610	Open in IMG/M
3300017404\|Ga0182203_1146949	Not Available	521	Open in IMG/M
3300017407\|Ga0182220_1041612	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza	657	Open in IMG/M
3300017407\|Ga0182220_1047191	Not Available	635	Open in IMG/M
3300017409\|Ga0182204_1037013	Not Available	716	Open in IMG/M
3300017409\|Ga0182204_1110648	Not Available	515	Open in IMG/M
3300017410\|Ga0182207_1144332	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	539	Open in IMG/M
3300017411\|Ga0182208_1088721	Not Available	567	Open in IMG/M
3300017415\|Ga0182202_1056442	Not Available	671	Open in IMG/M
3300017415\|Ga0182202_1081108	Not Available	599	Open in IMG/M
3300017415\|Ga0182202_1083171	Not Available	594	Open in IMG/M
3300017415\|Ga0182202_1138475	Not Available	503	Open in IMG/M
3300017417\|Ga0182230_1046691	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza	759	Open in IMG/M
3300017420\|Ga0182228_1088903	Not Available	576	Open in IMG/M
3300017420\|Ga0182228_1129531	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	502	Open in IMG/M
3300017424\|Ga0182219_1106985	Not Available	548	Open in IMG/M
3300017425\|Ga0182224_1062961	Not Available	684	Open in IMG/M
3300017425\|Ga0182224_1104451	Not Available	584	Open in IMG/M
3300017425\|Ga0182224_1125263	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	551	Open in IMG/M
3300017425\|Ga0182224_1136513	Not Available	536	Open in IMG/M
3300017425\|Ga0182224_1167398	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	500	Open in IMG/M
3300017427\|Ga0182190_1123238	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	557	Open in IMG/M
3300017430\|Ga0182192_1105212	Not Available	599	Open in IMG/M
3300017433\|Ga0182206_1153203	Not Available	508	Open in IMG/M
3300017436\|Ga0182209_1093740	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	615	Open in IMG/M
3300017436\|Ga0182209_1125866	Not Available	559	Open in IMG/M
3300017438\|Ga0182191_1038569	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza → Oryza sativa	840	Open in IMG/M
3300017443\|Ga0182193_1159104	Not Available	542	Open in IMG/M
3300017680\|Ga0182233_1068448	Not Available	635	Open in IMG/M
3300017682\|Ga0182229_1078816	Not Available	571	Open in IMG/M
3300017682\|Ga0182229_1099846	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	515	Open in IMG/M
3300017683\|Ga0182218_1092196	Not Available	590	Open in IMG/M
3300017683\|Ga0182218_1119426	Not Available	544	Open in IMG/M
3300017686\|Ga0182205_1042757	Not Available	795	Open in IMG/M
3300017686\|Ga0182205_1064551	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza	697	Open in IMG/M
3300017686\|Ga0182205_1108611	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	587	Open in IMG/M
3300017689\|Ga0182231_1042666	Not Available	849	Open in IMG/M
3300017690\|Ga0182223_1062367	Not Available	610	Open in IMG/M
3300017690\|Ga0182223_1069208	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza → Oryza sativa	592	Open in IMG/M
3300017690\|Ga0182223_1123401	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza	503	Open in IMG/M
3300021060\|Ga0182232_1047147	Not Available	719	Open in IMG/M
3300021060\|Ga0182232_1088892	Not Available	501	Open in IMG/M
3300025899\|Ga0207642_10346940	Not Available	875	Open in IMG/M
3300025899\|Ga0207642_11153503	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	502	Open in IMG/M
3300025907\|Ga0207645_10604613	Not Available	744	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Phyllosphere	Host-Associated → Plants → Phyllosphere	95.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.72%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	95.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	95.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Miscanthus Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere	93.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.59%
Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015267	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015269	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015274	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015276	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015282	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015283	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015286	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015287	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015288	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015289	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015291	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015294	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015295	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015296	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015298	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015299	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015300	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015302	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015303	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015304	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015305	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015307	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015314	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015322	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015323	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015341	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015342	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015344	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015345	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015346	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015351	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015355	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300017404	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017407	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017409	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017410	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017411	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017415	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017417	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_07NOV2016_LD1 MG	Host-Associated	Open in IMG/M
3300017420	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_07NOV2016_LD1 MG	Host-Associated	Open in IMG/M
3300017424	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017425	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017427	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017430	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017433	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017436	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017438	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017443	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017680	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_07NOV2016_LD1 MG	Host-Associated	Open in IMG/M
3300017682	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_07NOV2016_LD1 MG	Host-Associated	Open in IMG/M
3300017683	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017686	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017689	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_07NOV2016_LD1 MG	Host-Associated	Open in IMG/M
3300017690	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300021060	Phyllosphere microbial comminities from miscanthus, Michigan, USA - G6R3_NF_07NOV2016_LD2 MG	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0157378_111674212	3300013297	Miscanthus Rhizosphere	CYNLCHNDTLVEFQSARSFAGLLLEVSDYRHKGLYLYGSFELMVLFFEPATVCGLMCQN*
Ga0182122_10145182	3300015267	Miscanthus Phyllosphere	MCHDILNLESCEGYYNLCHNDTLVKSLSARFFVGLLLEVSDYRHKDLYLYGSFELRVLFFEPTMVCGLMFQN*
Ga0182113_10267892	3300015269	Miscanthus Phyllosphere	GGCYNPCHSDSLVESQSVGSFAGLLLEVSDYRHKDLYLYGSFELMVLFFEPTIVCSLMCQN*
Ga0182188_10261482	3300015274	Miscanthus Phyllosphere	MCLDTLDSESCEGCYNMCHNDTLVESQSVGSSTGLLPKVSDNRHKDLYLYGSFELRVLFFEPTT
Ga0182188_10493471	3300015274	Miscanthus Phyllosphere	DLASCEGCYNLCHSDTLVESRSVESCAGLLLEVSDYRYKDLYLYGSFELMVLFFESTMVCGLIYQN*
Ga0182170_10526771	3300015276	Miscanthus Phyllosphere	TLDLESCEGSYNMCHNDTLVESLSTRSFAGLLFEVSDYRHKDLYLYGSFELMMLFFEPTTVCGLTC*
Ga0182124_10542071	3300015282	Miscanthus Phyllosphere	NPLCLDTLDLESCEGCYSLIHSDNPMEFPSTGFFAGLLLEVSDYRHKDLYLYGPSERMVLSSDLTTVCGLMCQN*
Ga0182156_10579481	3300015283	Miscanthus Phyllosphere	VCLDTLDLESCDGCYNLCHKDTLVESLSAGSFAGLLLKVSDYRHEDLYLYESFELMVLFFEPTTVSGLMCQN*
Ga0182156_10702121	3300015283	Miscanthus Phyllosphere	NPVCLDTLDLESCEGCYNLCHNYTLVESLPIGSFTGLLLEVSDYRHKDLYLYGSFKLMVLFFEPMTVYGLMCQN*
Ga0182176_10209621	3300015286	Miscanthus Phyllosphere	NPMYLDTLDLDSCEGCCNLCHNDIPMESLFARSFAGLLLEVSDYRHEDLYLYESFELMVLFFELTMVCGPMCQN*
Ga0182171_10694561	3300015287	Miscanthus Phyllosphere	SCEGCYNPCHSDTLVESPSAGSSAGLLFEVSDYRHKDLYLYGSFELTVLFFEPTMVCGLMCQN*
Ga0182171_10708222	3300015287	Miscanthus Phyllosphere	HNDTLVESLPAGSFAGLLFEVSDCRHEDRYIYGSFELMVLFFKPTTVRGLMCQN*
Ga0182171_10773842	3300015287	Miscanthus Phyllosphere	MCLDILDLVLCGECYNLCHNDTPVEFQSAGSFAGLLFEVSDYRHKDLYLYGSFELMVLSFEPTMVCGLMYQN*
Ga0182173_10454082	3300015288	Miscanthus Phyllosphere	CLDILDLASCEGCYNPCHSDTLVESQSAGSFAGLLLEVSDYRHEDLYLYGSFELIVLFFEPTTVCGPMCQN*
Ga0182173_10465682	3300015288	Miscanthus Phyllosphere	SASIVKRVHLACLDILDSVSCGGCYNPCHSDSLVESQSVGSFASLLLEVSDYRHKDVYLYGSFELMVLFFKPTMVCGLMCQN*
Ga0182138_10579681	3300015289	Miscanthus Phyllosphere	LDILDFVSCGECYNLCHSDTLVESQSAGFSAGLRPEVSDYRHKDLYLYESSERMVLSSEPTTVCGLMSQN*
Ga0182138_10748481	3300015289	Miscanthus Phyllosphere	WCYNLCHNDTLMESLFIESFAGMLLEVSDYRHEDLYLYASFELMVLFFEPMMVCGPMCQN
Ga0182125_10091712	3300015291	Miscanthus Phyllosphere	PACLDILDLASCGGCYNPCHSDSLVESQSVGSFAGLLLEVFDYRHKDLYPYGSFELTVLFLSQRWYVY*
Ga0182125_10730231	3300015291	Miscanthus Phyllosphere	MCLGILDLASCEECYNPCHSDTLVESRSVGSFADLLLEVSDYRQKDLYLYGSFELMALFFESTMVCGLMCQN*
Ga0182125_10793741	3300015291	Miscanthus Phyllosphere	CPDILDLASCEGCYNLCHSDTLVESQSAGSFAGLLLEVSNYRHKDLYLYGSFELMLLFFEPMTVCGLMCQN*
Ga0182126_10515122	3300015294	Miscanthus Phyllosphere	MCLDTLDWESYEGCYNPCHIDTPMESLSARSFAGLLLDVSDYKHKDPYLYGSFELMVLFFEPTMV
Ga0182175_10552381	3300015295	Miscanthus Phyllosphere	VCLDTLDLESCERYYSLIHSDILLESPSAGFFAGWLLEVSNYRHKDLNLYGSFTLMVLLFEPTTVCGLM
Ga0182157_10431692	3300015296	Miscanthus Phyllosphere	LDILDLASCGGYYNLCHSDTLVESQSAGFFAGLLLEVSDYRYKDLYPYGFFELMVLFFEPMTVCGLMCQN*
Ga0182157_10962821	3300015296	Miscanthus Phyllosphere	ESCEGCYNLCYNETLVEFLSAGSFAGLLLEVSDYRHEDLYLYGSFQLMVLFFELTMVYGPMCQN*
Ga0182106_10407431	3300015298	Miscanthus Phyllosphere	VCLDTLDSESCEGCYNLCDNDTLVESLSAGSFAGLLLEVSDYRHEDLYLYGSFELMVLFLSQ*
Ga0182106_10669162	3300015298	Miscanthus Phyllosphere	CYNMCLNDNPMESLSAGFFASLLIEVSDCRHEDLYLYGSFELMVLFFELTTVCGLMCQN*
Ga0182107_10312612	3300015299	Miscanthus Phyllosphere	DTLDLESCEWCYSLIHSDILVEPLSAGSFAGLLLEVSDYRHKDLYPYGSFELMVLFFELTMVSGLMCQN*
Ga0182107_10623281	3300015299	Miscanthus Phyllosphere	LDTLDSESCEGCYNLCHSDNPMESSSAGSFAGLLLEVSDYRHEDLYLYGSFELMVLFFEPTMVCGPMCQN*
Ga0182107_10660102	3300015299	Miscanthus Phyllosphere	VCLDTLDLESCEGCYNLCHNDTPMESVSAGSFAGLLLEVSDYRHEDLYLYGSFELMVLFFEPMMVCGPMCQN*
Ga0182107_10869012	3300015299	Miscanthus Phyllosphere	GGCYNLCHSDTLVESQSARSFAGLLLEVSDYRYKDLYPYGSFELVVLFFEPMMVFGMMCQN*
Ga0182107_10986181	3300015299	Miscanthus Phyllosphere	CLDTLDLKSCEGCYNLCHSDNTMESPSVGSFAGLLLEVSDCRHEDLYLYGSFELRVLFFEPTTVCGLMCQN*
Ga0182108_10880961	3300015300	Miscanthus Phyllosphere	CLDILDLASCGGYYNLCHSDTLIESQSAGFFAGLLLEVSDYRHKDLYLYGSFELMVLFFEPTMACGLMCQN*
Ga0182108_10926221	3300015300	Miscanthus Phyllosphere	ILDLVSCRGCYNLCYNDTIVEFQSAGSFAGLLFEVSDYRHKDLYLYGSFELMVLFFEPTTVCGLICQN*
Ga0182143_10603852	3300015302	Miscanthus Phyllosphere	PCHSDSLVEFQIVGSFAGLPLEVSDYRHKDLYLYGSFELMVLFFKPTIVCGLMCQN*
Ga0182143_10613901	3300015302	Miscanthus Phyllosphere	LDLVSCGGCYNLCHNDSLMESQSIGSFAGLLLEVSDYRHKDLYLYGSFELMVLSSEPMMVCGLMCQN*
Ga0182143_11046771	3300015302	Miscanthus Phyllosphere	MYLDTLDSESCEGCYNLCHSDTLVESPSAGFFAGLLLEVSNCRHKDLYLYGSFELMVLFFESTTICGLMCQN
Ga0182123_10413542	3300015303	Miscanthus Phyllosphere	YNMCHSDTLVESLSAGSFASLLLEVSDCRHEDLYLYGSFELIVLFFEPMTVCGLMCQN*
Ga0182112_10307332	3300015304	Miscanthus Phyllosphere	MCLNTLDSESCEGCYNLCHNDTLVEFLFAGSFAGLLLEVSDYRHEDIYLYESFELMVLFFEPTIVCGLMCQN*
Ga0182112_10828371	3300015304	Miscanthus Phyllosphere	NSVCLDTLDSESCEGCYNLCHNDTPVESLSAGSFASLLLKVSDYRHEDLYLYGSFELMVLFFEPTTVCGPMCQN*
Ga0182112_10885381	3300015304	Miscanthus Phyllosphere	VCLDTLDSESYEECYNPCHNDTLMESLSAGSFAGLLLEVSGYRHYDLYLYGSFELMALFFEPTMVCSLMC*
Ga0182112_11046541	3300015304	Miscanthus Phyllosphere	MCLGTLDSESCEGYYSLIHSDTLVESPSAGFFTGLLLEVSDYRHKDLSLYGSFELMVLFFELTM
Ga0182158_10594171	3300015305	Miscanthus Phyllosphere	ILDLVSCGGCYNPCHNDSLVESQSVGSFAGLLLEVSNYRHRDLYLYGPSERMVLSSEPTTVCGLMCQN*
Ga0182158_10861562	3300015305	Miscanthus Phyllosphere	GILDLASCEGYYNLCHSDTLVESRSVGFFVGLLLEVSDCRHKDLYLYGSFESMVLFFEPTTVCVLMCRN*
Ga0182158_10869341	3300015305	Miscanthus Phyllosphere	MCLDTLDSESYEGCYNLYHNDTPMESLSVGSFASSLLEVSDYRYEDLYLYESFELMVLFF
Ga0182158_10877092	3300015305	Miscanthus Phyllosphere	SCGGRYNPCHNDSLVESQSVGSFAGLLLEVFDYRHKDLYLYGSSERMVLSSKLMIVCGLMCQN*
Ga0182158_10993752	3300015305	Miscanthus Phyllosphere	ESFEGCYNMCHNNTPMESLSVGSFAGLLLEVSDCRHEDLYLYRSFELMVLFFEPTMDVA*
Ga0182144_10571532	3300015307	Miscanthus Phyllosphere	LDTLDLVSCGGCYNPCHNDSLMESQSIRSFAGLLLEVSDYRHKDLYLYGSSERMVLSSKPTMVCGLMCQN*
Ga0182140_10499302	3300015314	Miscanthus Phyllosphere	NPACLDILDLVSCGGCYNSCHSDSLVESQSVGSFAGLLLKVSNYRHNDLYLYGSFELMVLSSEPTTVCGLM*
Ga0182110_11192932	3300015322	Miscanthus Phyllosphere	PNVISCGECYNLCHSDTLVESESVGSSAGLLLEVSDCRHQDLFLFGCFELMVLFFELTMVCGLMCQN*
Ga0182129_10745432	3300015323	Miscanthus Phyllosphere	GLASCGMCYNLCHSDTLVESQSVGSFAGLLLEVSDYKYKDLYLYGSFELMVLFF*
Ga0182129_10851601	3300015323	Miscanthus Phyllosphere	MCLGILDLATCEGYCNLCHSDTLVESQSVGSSTGLLLEVSDYRHKDLYLYGSFELMVLFFEPTTVYGLMC*
Ga0182187_10862911	3300015341	Miscanthus Phyllosphere	DSVSCGECYNLCHSDTLVESQSAGSFAGLLLEVSNYRYKDLYPYGSFVLMVLVFEPMTVCGLMCQN*
Ga0182187_11020051	3300015341	Miscanthus Phyllosphere	MCLDTLDSESCEGCYNMCHNDTPVEFLSVGSFAGLLLEVSDYRHEDLYLYGSFELMVLFFEPMMVCGLMCQN*
Ga0182187_11849971	3300015341	Miscanthus Phyllosphere	NPVCLDILDSVSCGECYNLCHSDTLVESQSVGSFAGLLLEVSDYRHKVLYLYGSFKLMVLFFEPTTVCGLMCQN*
Ga0182187_12011751	3300015341	Miscanthus Phyllosphere	CEGCYNLCHNDTPVKSLFVGSFASLLLEVSDCRHEDLYLYGSFELIVLFFEPMTVCDLMCQN*
Ga0182109_11037262	3300015342	Miscanthus Phyllosphere	MCLGILDLASFEGCYNPCHSDTLVESESAGSFAGSLLEVSDYIHKDLYSYGSFELMVLFFEPTMICGLMCQN*
Ga0182189_11145361	3300015344	Miscanthus Phyllosphere	LASYEGCYNLWHSDTLVESRSVEFSAGLLLKVSEYRYKDLYLYGSFELMVLFFEPTTVYGLMCQI*
Ga0182189_11458602	3300015344	Miscanthus Phyllosphere	MCLDTLDSESCEGCYNLCHNDTHVESLSAGSFAGLLLEVSGYRHYDLYLYESFELIVLFFMLTMVCGLMCQN*
Ga0182189_11984162	3300015344	Miscanthus Phyllosphere	TLDFESCEGCCNLCHNDPYVESLSSRSSAGLLLEVSDYRYKDLYLYGSFELMVLFFEPTMVCGLMCQN*
Ga0182189_12108332	3300015344	Miscanthus Phyllosphere	CHSDSLVEPQSVGSFAGLLLEISDYRYKDLYLYGSFELMVLSSETTTVYGLMCQN*
Ga0182111_11552232	3300015345	Miscanthus Phyllosphere	MCYSDTLVESLSTGSFASLLLKVSDCRHKDLYLYGSFELMVLFFEPTMVYGLMCQN*
Ga0182139_11551381	3300015346	Miscanthus Phyllosphere	LDLKSYEGCYNLCHSDNPMESPSVGSFAGLLLEVSDYRYKDLYLYGSFELMMLFFELTTLCGLMCQN*
Ga0182139_12240612	3300015346	Miscanthus Phyllosphere	EGCYNLYHNDTLVESLSIGSFASLLLKVSDYRHDDLYLYGSFELMMLFFEPTMVCGPMCQN*
Ga0182139_12266092	3300015346	Miscanthus Phyllosphere	LESCEGCYNLCHNDTLVESLFAGSFAGLLLEVSDCRHKDLYLYGSFELRVLFFEPTTVCGLMCQN*
Ga0182161_10969222	3300015351	Miscanthus Phyllosphere	DLDTLDSESYEGCYNLCHNDTPMESLSIGSFAGLLLEVSDCRHEDLYLYGSFELMVLFFKPTIVCGLMCQN*
Ga0182161_11512032	3300015351	Miscanthus Phyllosphere	ESCEGCYSLIHSDNPMEFPSTGFFAGLLLEVSDYRHKDLYLYKSFELMVLFFEPTTACGLMRQN*
Ga0182161_11994702	3300015351	Miscanthus Phyllosphere	LTDLDSSVFADPSVDSNPVCLDTLDSVSCGECRNLCHSDTLVESQSVRSFAGSLLEVSDYRHKDLYLYGSFELMVLFFEPTTVCGLMRQN*
Ga0182159_12676941	3300015355	Miscanthus Phyllosphere	MCLDTLDLESCEGYYSLIHSDILVEPLSAGSFTGLLLEVSDYKHKDLYLYGSFELMVLFFELTTVCGLMCQN
Ga0182203_10911541	3300017404	Miscanthus Phyllosphere	CEGCYNLCHNDNPVESLSIESFAGLLLEVYDCRHEDLYLYGSFELMVLFFEPTMVCGLMCQN
Ga0182203_11469492	3300017404	Miscanthus Phyllosphere	GGCYNPCHSDSLMESQSVGSYAGLLLEVSDYIHKDLYLYVFFESMVLFFEPTTVCGLMCQ
Ga0182220_10416121	3300017407	Miscanthus Phyllosphere	MCPDILDLASCGECYNLCDSDILVESQSAGSSAGLLLEVSDYRHKDLYLYGSFESMVLFFEPTTVCGLMCQN
Ga0182220_10471912	3300017407	Miscanthus Phyllosphere	CEECYNLCHSDTLVESQSVGSSAGLLPGASDCRHEDLYLYGSFELMVLFFEPTMVCGLMCQN
Ga0182204_10370132	3300017409	Miscanthus Phyllosphere	MCLDILDLESCEGCYNLCHNDTLVESLSVGSFAGSLFEVFDCRHKDLYLYGSFELIVLFFELMMVCGLMCQN
Ga0182204_11106481	3300017409	Miscanthus Phyllosphere	EGCYNLCHSDNLVEFPSVGFFAGLLLEVSDYRHKDLYLYGSFELRVLFFEPTTVRGLMCQ
Ga0182207_11443321	3300017410	Miscanthus Phyllosphere	MCPDILDLASCEGCYNPCYSDTLVESQSAGSFAGLLLEVSDYRHKDLYLYGSFALMVLFFEPATVCA
Ga0182208_10887212	3300017411	Miscanthus Phyllosphere	CGGCYNPCHNDSLVESQSVGSFAGLLLEVSDYRHKDLYLYGSSERMVLSSEPTTVCGLMCQN
Ga0182208_10954081	3300017411	Miscanthus Phyllosphere	MCLGTLDSESYEGCYNLCHSDTLVESLSVGSFTGLLLEVSDYRHKDLYLYGSFELRVL
Ga0182202_10564422	3300017415	Miscanthus Phyllosphere	VCLDILDLAPCGGSYNLCYSDSLVESQSVGSFAGLLLEVSDYRYKDLYLYGSFELMVLFFEPTMVYGLMCQS
Ga0182202_10811082	3300017415	Miscanthus Phyllosphere	MCPDILDLVSCGECHNLCHSDTLMESQSTGFSAGLLLEVSDYRHKDLYLYGPFELMVLSSEPTMVYGLMCQN
Ga0182202_10831711	3300017415	Miscanthus Phyllosphere	TLDLESFEGCYSLCHNDTLVGSLSTGSFAGLLLEVSDYRHKDLYLYGSFELRVLFFELTMVCGLMCQN
Ga0182202_11384752	3300017415	Miscanthus Phyllosphere	LDTLDSELYEGCYNLCHNETLVESLSAGFFAGLLLEVSDYRHEDLYLHGSFELMVLFFESTMVCGPMCRN
Ga0182230_10466911	3300017417	Miscanthus Phyllosphere	MCLDTLDSKSCEGCYNLCHNDTLVESLSTGSFASLLLEVSDCRHEDLYLYGSSKLMVLFFEPTMV
Ga0182228_10889032	3300017420	Miscanthus Phyllosphere	ACPDILDLASCGECYNLCHSDTLMESQSAGSSAGLLLEVSNCRHKDPYLYGSFESIVLFFEPTTVCGLMCQN
Ga0182228_11295311	3300017420	Miscanthus Phyllosphere	MCLDTLDSESCEGCYNLCDNDTLVESLSAGSFAGLLLEVPGYRYEDLYLYGSFELMALCFEPMTISGLMCQN
Ga0182219_11069851	3300017424	Miscanthus Phyllosphere	MCLDILDLASCGGYYNLCHSDTLVESQSAGSFAGWLLEVSDYRHKDLYLYGSFELMVLFFEPT
Ga0182224_10629611	3300017425	Miscanthus Phyllosphere	MCLNTLDSESCEGCYNLCHNDTLVEFLFAGSFAGLLLEVSDCRHEDLYLYGSFELMVLFFEPMMVCGLMCQN
Ga0182224_11044511	3300017425	Miscanthus Phyllosphere	VCLDTLDSESCEECYNLCHNDTLVESLSVGSFTGSLLEVSNYRHEDLNLHGSFELMVLFFESTTVCGPMCQN
Ga0182224_11252631	3300017425	Miscanthus Phyllosphere	MCPDTLDSKSCEGCYNLCHNDTPMESLYAGSFDGLLLEVSGYRHEDLYLYGSFELIVLFFESMMVCGLTCQN
Ga0182224_11365132	3300017425	Miscanthus Phyllosphere	MCLDTLGSESCEGCYNLCHNDTLVEPLSIGSFAGLLLEVSDCRHEDLHLYRSFELMVLFFEPTTVCGL
Ga0182224_11673982	3300017425	Miscanthus Phyllosphere	VCLDILDLASCGGCYNLCHSDTLVESQSTESFAGLLLEVSDYRYKDLYLYGSFELMVLFFEP
Ga0182190_11232381	3300017427	Miscanthus Phyllosphere	MCLDTLDSESYEGCYNLCHNDTPVESLFAGSFAGLLLEVSDYRHEDLYLYASFELMVLFFEPMMVCGPMCQN
Ga0182192_11052122	3300017430	Miscanthus Phyllosphere	MCLDILDLASCEGCYNLCYTNTLVESQSAGSFAGLQLEVSDYRHKDLYLYGSFALMVLFF
Ga0182206_11532031	3300017433	Miscanthus Phyllosphere	LDILDLASCGGCYNPCHSDSLVESQSVGSFAGLLLEVSDYRHKDLYLYGSFELMVLFFEPTTVCGLMCQN
Ga0182209_10937401	3300017436	Miscanthus Phyllosphere	MCLGTLDLESCEGCYNLCHSNTLVESLSAGFFAGLLLEVFDYRHKDLYLYGSFELRVLFSEPTTVCGLMCQN
Ga0182209_11258661	3300017436	Miscanthus Phyllosphere	VCLDILDLASCGGCYNLCHSDTLVESPSAGSFASLLLEVSDYRYNDLYLYGSFEFMVLFFEPTMV
Ga0182191_10385691	3300017438	Miscanthus Phyllosphere	VCLDILDLASCEGCYNPCHSDTLVEFRSAGFFASLLLEVSDCRHKDLYLYGSFELMVLFFEPTTVC
Ga0182193_11591041	3300017443	Miscanthus Phyllosphere	TLDLESYKGCYNLCHNDTLVESLSAGSFAGLLLEVSDYRHKDLYLYGSFELMVLFFEPTMVCGFMCQN
Ga0182233_10684482	3300017680	Miscanthus Phyllosphere	PMCLNILDLVSCEGCYNICHIDTLVESQSIGSFAGLLLEVSDYRHKDLYLYGSFELMVLFFEPTTVCGLMCQN
Ga0182229_10788161	3300017682	Miscanthus Phyllosphere	MDLVSCGGCYNPCHSGSLVESQSVGSLAGLLLKVSDYRHKDLYLYGSFELMVLSFEPTMVCGLMCQH
Ga0182229_10940421	3300017682	Miscanthus Phyllosphere	VCLDILDLTSCGGCYNPCHSDSLVESQSVGSFTGLLLEVSDYRHKDLYLYGSFELM
Ga0182229_10998461	3300017682	Miscanthus Phyllosphere	VCLGTLDLESWEGCYNLCHSDTLVEYLSAKSFAGLLLEVSDHRHKDLYLYGSFELRVLFFVPMM
Ga0182218_10921962	3300017683	Miscanthus Phyllosphere	ASCGGCYNLCHSDTLVESQYVGSFAGMLLEVSDYRYKDLYLYRSFELTVLFFEPAMVCGLMCQN
Ga0182218_11194261	3300017683	Miscanthus Phyllosphere	VCLNILDLTSCGECYNLCHSDTLVESRSTGSFTGLLFEVSDYRHKDLYLYRSFELMVLFF
Ga0182205_10427572	3300017686	Miscanthus Phyllosphere	VCLDTLDLESCEGRYNLCHNDTPMESLSAGSFAGLLLEVSDYKHKDLYLYGSFKLTVLFFEPTTVCGLMCQN
Ga0182205_10645512	3300017686	Miscanthus Phyllosphere	MCLGTLDLESCEGCYSLIHSDTLVESPSAGFFAGLLLEVSDYRHKDLYLYGSFELIVLFFEPTTVYGLMCQN
Ga0182205_11086111	3300017686	Miscanthus Phyllosphere	MCLDILDLASCGGCYNPCHSDTLVESQSVGSFASLLLEVFDYRHKDLYLYGSFELMVLFFEP
Ga0182231_10426662	3300017689	Miscanthus Phyllosphere	MCLGILDLTSCEGCYNPCHSDTLVESQSVGSFAGLLLEVSDYRHNDLYLYESFELMVLFV
Ga0182223_10623671	3300017690	Miscanthus Phyllosphere	LALCGGCYNLCHSDTLVESRSAESFAGLLLKVSDCRHKDLYLYGSFELRVLFFEPTTVRGLMCQN
Ga0182223_10692081	3300017690	Miscanthus Phyllosphere	VCLDTLDSESCEGCCNLCHNDTPIESLSVGSFAGLSLEVSDCRHDDLYLDGSFELMVLFFEPTT
Ga0182223_11234011	3300017690	Miscanthus Phyllosphere	MYPNILDLASCGECYNSCHSDILVESQSAGSSASLLLEVSDYRHKDLYLYGSFESMVLFFEPMTVCGLM
Ga0182232_10471472	3300021060	Phyllosphere	DPVCLDTLDSESCEECYNLCHSDTLVEFLSAGSFAGLLLEVSDCRHENLYLYRSFELMVLFFEPTTVCGLMCQN
Ga0182232_10888922	3300021060	Phyllosphere	SCGGCYNPCHNDSLVESQSVGSFAGLLFEVSDYRHKDLYLYGSSERMVLSSEPTTVCGLMCQN
Ga0207642_103469402	3300025899	Miscanthus Rhizosphere	DLESCGGCYNPCHSDSLVESQSVGSFAGLLLEVSNYRHKDLYLYGSFELMVLFFEPATVCGLMCQN
Ga0207642_111535032	3300025899	Miscanthus Rhizosphere	VCLHILDLALCGGCYNLCYSDTLMESQSAGSFAGLLLEVSDCRHKDLYLYQSFELTVLFSELTKV
Ga0207645_106046132	3300025907	Miscanthus Rhizosphere	MCLDTLNSESCEGCYNLCHSDNPTEFPSAGFFASLLLEVSYYRREDLYLYRSFELMVLFF
Ga0207643_108646991	3300025908	Miscanthus Rhizosphere	MCLDILDLASCGGYYNLCHNDTLVESRSAGSFVGLLLEVSDCRHKDLYFYGSSEWL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078042

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences