Metagenome / Metatranscriptome Family F077954

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F077954
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	41 residues
Representative Sequence	MVIHYQPERLRRNSDQPTAITNVLVATSGSSSRTGDIPLGTP
Number of Associated Samples	80
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	99.15 %
% of genes near scaffold ends (potentially truncated)	95.73 %
% of genes from short scaffolds (< 2000 bps)	98.29 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (60.684 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (51.282 % of family members)
Environment Ontology (ENVO)	Unclassified (52.137 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (48.718 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.00% β-sheet: 0.00% Coil/Unstructured: 80.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF13453	zf-TFIIB	39.32
PF00011	HSP20	25.64
PF01145	Band_7	5.98
PF02909	TetR_C_1	1.71
PF13610	DDE_Tnp_IS240	0.85
PF00440	TetR_N	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	25.64
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	1.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.68 %
All Organisms	root	All Organisms	39.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.68 %
cellular organisms	root	All Organisms → cellular organisms	39.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.68 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.68 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	38.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.68 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	38.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.68 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	35.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.68 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	4.27 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.56 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.85 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.68 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	4.27 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.56 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.85 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.68 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	4.27 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.56 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.68 %
unclassified Nocardioides	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides	4.27 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.56 %
Amycolatopsis vancoresmycina	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis vancoresmycina	0.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.68 %
Nocardioides sp. LS1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. LS1	4.27 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.56 %
Amycolatopsis vancoresmycina DSM 44592	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis vancoresmycina → Amycolatopsis vancoresmycina DSM 44592	0.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309009\|GPKNP_GG3DY5402J2P14	Not Available	532	Open in IMG/M
3300000956\|JGI10216J12902_104678978	Not Available	625	Open in IMG/M
3300001431\|F14TB_102374086	Not Available	834	Open in IMG/M
3300006058\|Ga0075432_10450864	Not Available	565	Open in IMG/M
3300006580\|Ga0074049_12528739	Not Available	508	Open in IMG/M
3300009100\|Ga0075418_11880518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	651	Open in IMG/M
3300009100\|Ga0075418_11941808	Not Available	641	Open in IMG/M
3300009799\|Ga0105075_1035735	Not Available	589	Open in IMG/M
3300009805\|Ga0105079_1003141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. LS1	1061	Open in IMG/M
3300009815\|Ga0105070_1120800	Not Available	527	Open in IMG/M
3300009818\|Ga0105072_1028321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. LS1	1035	Open in IMG/M
3300009820\|Ga0105085_1035137	Not Available	889	Open in IMG/M
3300009837\|Ga0105058_1150564	Not Available	565	Open in IMG/M
3300010039\|Ga0126309_10288421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	944	Open in IMG/M
3300010041\|Ga0126312_11330111	Not Available	532	Open in IMG/M
3300010044\|Ga0126310_11096613	Not Available	633	Open in IMG/M
3300010045\|Ga0126311_11051112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	668	Open in IMG/M
3300010045\|Ga0126311_11867917	Not Available	510	Open in IMG/M
3300010085\|Ga0127445_1089879	Not Available	788	Open in IMG/M
3300010399\|Ga0134127_13660706	Not Available	504	Open in IMG/M
3300010400\|Ga0134122_12475763	Not Available	568	Open in IMG/M
3300012201\|Ga0137365_10656384	Not Available	768	Open in IMG/M
3300012358\|Ga0137368_10200410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1420	Open in IMG/M
3300012373\|Ga0134042_1149593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	895	Open in IMG/M
3300012396\|Ga0134057_1281741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2024	Open in IMG/M
3300012515\|Ga0157338_1050930	Not Available	594	Open in IMG/M
3300017997\|Ga0184610_1006472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2809	Open in IMG/M
3300018028\|Ga0184608_10305144	Not Available	700	Open in IMG/M
3300018053\|Ga0184626_10134707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1050	Open in IMG/M
3300018071\|Ga0184618_10419563	Not Available	565	Open in IMG/M
3300018075\|Ga0184632_10294861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	702	Open in IMG/M
3300018077\|Ga0184633_10352790	Not Available	742	Open in IMG/M
3300018432\|Ga0190275_13220818	Not Available	528	Open in IMG/M
3300018476\|Ga0190274_12280510	Not Available	638	Open in IMG/M
3300019254\|Ga0184641_1027630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis vancoresmycina → Amycolatopsis vancoresmycina DSM 44592	608	Open in IMG/M
3300019254\|Ga0184641_1373781	Not Available	511	Open in IMG/M
3300019254\|Ga0184641_1388591	Not Available	694	Open in IMG/M
3300019255\|Ga0184643_1455219	Not Available	697	Open in IMG/M
3300019269\|Ga0184644_1426438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1159	Open in IMG/M
3300019279\|Ga0184642_1592247	Not Available	615	Open in IMG/M
3300019279\|Ga0184642_1723668	Not Available	545	Open in IMG/M
3300019869\|Ga0193705_1045718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	914	Open in IMG/M
3300019869\|Ga0193705_1082026	Not Available	620	Open in IMG/M
3300021951\|Ga0222624_1038300	Not Available	510	Open in IMG/M
3300022195\|Ga0222625_1370207	Not Available	703	Open in IMG/M
3300026118\|Ga0207675_101537031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	686	Open in IMG/M
3300026704\|Ga0208581_104200	Not Available	642	Open in IMG/M
3300027209\|Ga0209875_1016471	Not Available	871	Open in IMG/M
3300027209\|Ga0209875_1020823	Not Available	776	Open in IMG/M
3300027277\|Ga0209846_1009935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1618	Open in IMG/M
3300027750\|Ga0209461_10107333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	640	Open in IMG/M
3300028717\|Ga0307298_10207067	Not Available	578	Open in IMG/M
3300028722\|Ga0307319_10074938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1073	Open in IMG/M
3300028791\|Ga0307290_10064435	All Organisms → cellular organisms → Bacteria	1327	Open in IMG/M
3300028807\|Ga0307305_10495687	Not Available	548	Open in IMG/M
3300028824\|Ga0307310_10392643	Not Available	688	Open in IMG/M
3300028828\|Ga0307312_10973607	Not Available	562	Open in IMG/M
3300028878\|Ga0307278_10329854	Not Available	673	Open in IMG/M
3300028881\|Ga0307277_10273032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	748	Open in IMG/M
3300028884\|Ga0307308_10259116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. LS1	833	Open in IMG/M
3300030830\|Ga0308205_1031612	Not Available	650	Open in IMG/M
3300030831\|Ga0308152_101040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1190	Open in IMG/M
3300030831\|Ga0308152_101537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1047	Open in IMG/M
3300030831\|Ga0308152_101954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	970	Open in IMG/M
3300030831\|Ga0308152_102060	Not Available	953	Open in IMG/M
3300030831\|Ga0308152_104819	Not Available	732	Open in IMG/M
3300030902\|Ga0308202_1018557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1066	Open in IMG/M
3300030986\|Ga0308154_103353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	880	Open in IMG/M
3300030987\|Ga0308155_1005337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	917	Open in IMG/M
3300030988\|Ga0308183_1073128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	734	Open in IMG/M
3300030990\|Ga0308178_1020484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1044	Open in IMG/M
3300030990\|Ga0308178_1021723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1025	Open in IMG/M
3300031081\|Ga0308185_1009763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1003	Open in IMG/M
3300031081\|Ga0308185_1012897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. LS1	906	Open in IMG/M
3300031081\|Ga0308185_1019165	Not Available	779	Open in IMG/M
3300031091\|Ga0308201_10099664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	836	Open in IMG/M
3300031095\|Ga0308184_1008246	Not Available	938	Open in IMG/M
3300031100\|Ga0308180_1009431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	835	Open in IMG/M
3300031100\|Ga0308180_1026574	Not Available	586	Open in IMG/M
3300031100\|Ga0308180_1037410	Not Available	524	Open in IMG/M
3300031114\|Ga0308187_10112663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	861	Open in IMG/M
3300031114\|Ga0308187_10314318	Not Available	592	Open in IMG/M
3300031114\|Ga0308187_10413142	Not Available	536	Open in IMG/M
3300031124\|Ga0308151_1011698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	820	Open in IMG/M
3300031124\|Ga0308151_1021315	Not Available	671	Open in IMG/M
3300031125\|Ga0308182_1021155	Not Available	558	Open in IMG/M
3300031423\|Ga0308177_1002232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1105	Open in IMG/M
3300031423\|Ga0308177_1008508	Not Available	750	Open in IMG/M
3300031424\|Ga0308179_1022477	Not Available	703	Open in IMG/M
3300031424\|Ga0308179_1036133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	602	Open in IMG/M
3300031424\|Ga0308179_1045588	Not Available	558	Open in IMG/M
3300031505\|Ga0308150_1001004	Not Available	1917	Open in IMG/M
3300031505\|Ga0308150_1004818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1133	Open in IMG/M
3300031903\|Ga0307407_10930258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	668	Open in IMG/M
3300031903\|Ga0307407_11605211	Not Available	516	Open in IMG/M
3300031903\|Ga0307407_11626070	Not Available	513	Open in IMG/M
3300032002\|Ga0307416_100273743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1660	Open in IMG/M
3300032002\|Ga0307416_101922685	Not Available	695	Open in IMG/M
3300032004\|Ga0307414_11299197	Not Available	675	Open in IMG/M
3300032004\|Ga0307414_11553644	Not Available	616	Open in IMG/M
3300032005\|Ga0307411_11430975	Not Available	633	Open in IMG/M
3300032126\|Ga0307415_100794045	Not Available	863	Open in IMG/M
3300032126\|Ga0307415_101058844	Not Available	757	Open in IMG/M
3300034448\|Ga0370540_11190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	580	Open in IMG/M
3300034643\|Ga0370545_049294	Not Available	814	Open in IMG/M
3300034644\|Ga0370548_082330	Not Available	626	Open in IMG/M
3300034680\|Ga0370541_007246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1049	Open in IMG/M
3300034680\|Ga0370541_007325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. LS1	1045	Open in IMG/M
3300034680\|Ga0370541_018405	Not Available	770	Open in IMG/M
3300034680\|Ga0370541_022275	Not Available	721	Open in IMG/M
3300034680\|Ga0370541_024882	Not Available	695	Open in IMG/M
3300034680\|Ga0370541_033921	Not Available	624	Open in IMG/M
3300034681\|Ga0370546_012870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1018	Open in IMG/M
3300034681\|Ga0370546_015040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	968	Open in IMG/M
3300034681\|Ga0370546_034891	Not Available	729	Open in IMG/M
3300034681\|Ga0370546_077789	Not Available	552	Open in IMG/M
3300034681\|Ga0370546_089313	Not Available	523	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.32%
Host-Associated	Host-Associated	13.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.50%
Plants	Host-Associated → Plants	13.68%
Aquatic	Environmental → Aquatic	12.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.11%
Freshwater	Environmental → Aquatic → Freshwater	7.69%
Sediment	Environmental → Aquatic → Sediment	5.13%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.71%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.11%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.69%
Sand	Environmental → Terrestrial → Soil → Sand	7.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.13%
Loam	Environmental → Terrestrial → Soil → Loam	1.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.71%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	62.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.11%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.69%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	7.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.13%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.71%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	51.28%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	8.55%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	7.69%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	7.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.13%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.56%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.56%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.71%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.85%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309009	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009799	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30	Environmental	Open in IMG/M
3300009805	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_0_10	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010085	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012373	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012396	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026704	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN606 (SPAdes)	Environmental	Open in IMG/M
3300027209	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027277	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030831	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_141 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030986	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_143 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031081	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_159 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031095	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031100	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_151 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031124	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_140 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031125	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_153 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031423	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_148 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031424	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031505	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_139 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300034448	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_115 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKNP_08990520	2070309009	Soil	MVIHYPPAQLRRNSDQPTAITGVLVATSGIVPPHR
JGI10216J12902_1046789781	3300000956	Soil	MVAHYPPARLRHNSDRPTAITDVLVATSPSSHRTGEIP
F14TB_1023740863	3300001431	Soil	MLTHFEPGRLXXXSDRPTAITDVLVATSPSGYRTGDI
Ga0075432_104508641	3300006058	Populus Rhizosphere	MVIHYQPERLRHNSDQPTAITDVLVATPGSSHQTSEILL
Ga0074049_125287391	3300006580	Soil	MVIHYPSARLRRNSDQPTAITDVLVATAGSSSRTG
Ga0075418_118805183	3300009100	Populus Rhizosphere	MVIHYPPERLRSNSDRPSAITDVLVATTGSSSTGEISLGAPTCSAR
Ga0075418_119418083	3300009100	Populus Rhizosphere	MGIHCQPERLRHDSDQPTAITNVLVATSGSSYHTGDIPLGVP
Ga0105075_10357353	3300009799	Groundwater Sand	MVIHYQPGRLRRNSDQPTAITNVLVATSGSSARTGDIPLGTPTCSVRTRH
Ga0105079_10031412	3300009805	Groundwater Sand	MVIHYQPGRLRRNSDQPTVVTDVLVATSPSSWRTGDIPLGT
Ga0105070_11208003	3300009815	Groundwater Sand	MVIHYQPGRLRRNSDQPTAITDVLVATSGSSARTGDIPLGTP
Ga0105072_10283211	3300009818	Groundwater Sand	MVIHYQPGRLRRNSDQPTAITNVLVATSGSSARTGDIPLG
Ga0105085_10351371	3300009820	Groundwater Sand	MVLHYQPERLRYNSDQPTAITNVLVATSGSSCRTGEIPLGT
Ga0105058_11505641	3300009837	Groundwater Sand	MVIHYQPGRLRRNSDQPTAITNVLVATSGSSARTGDIPL
Ga0126309_102884213	3300010039	Serpentine Soil	MVIHYPPTRLRSNSDQPTAITNVLVTTSGCTRTGDI
Ga0126312_113301111	3300010041	Serpentine Soil	MVIHYPPERLRRNSDRPTAITDVLVATSGSSYRTGD
Ga0126310_110966133	3300010044	Serpentine Soil	MVTHYPPARLRYNSDQPTAITNVLLATSGSSSRTGDI
Ga0126311_110511123	3300010045	Serpentine Soil	MVIHYPPARLRSNSDQPTAITNVLVTTSGSSHQSGEIPLGTP
Ga0126311_118679172	3300010045	Serpentine Soil	MVIHYPPARLRHNSDQPTAITNVLVATSGSSSRTGEIPLGSPT
Ga0127445_10898791	3300010085	Grasslands Soil	MVIPYQPERLRYNSDQPTAVTNVLVATSGSTCRTGDIPLGIP
Ga0134127_136607061	3300010399	Terrestrial Soil	MVIHYPPERLRSNSERLSAITDVLVTTTGSSSTGEIS
Ga0134122_124757631	3300010400	Terrestrial Soil	MVIHYPPERLRSNSDRPSAITDVLVTTTGSSSTGEI
Ga0137365_106563842	3300012201	Vadose Zone Soil	MVIHHQPGRLGRSSDQPTAITNVLAATSGSSHRTGDLPLGIPTC
Ga0137368_102004101	3300012358	Vadose Zone Soil	MVIHYQPGQLRRDRDQPTAITGAQVATSPLFSRSSDLPLGTPTC
Ga0134042_11495931	3300012373	Grasslands Soil	MVIHYQPERLRYNSDQPTAITNVLVATSGSSHQTRDIPLGTP
Ga0134057_12817414	3300012396	Grasslands Soil	MVTHYSPARLRRNSDQPTAITNVLVATSPSSYRTGDIPLGTP
Ga0157338_10509301	3300012515	Arabidopsis Rhizosphere	MVLHYQPERLRYTSDQPTAITNVLINRSGSSSRSGEIPLGSP
Ga0184610_10064721	3300017997	Groundwater Sediment	MVIHYQPGRLRRNSDQPTAITNVLVATSGSSWRTSEIPL
Ga0184608_103051443	3300018028	Groundwater Sediment	MVIHYPPARLRRNSDQPTAITDVLITGSGSSSRTG
Ga0184626_101347071	3300018053	Groundwater Sediment	MVIHYQPGRLRRNSDQPTAIADVLVATSPSSYRTGDIPLGTPTCSA
Ga0184618_104195632	3300018071	Groundwater Sediment	MVIHYPPERLRRNSDQPTAITNVMVATSGSSSHTGDIPLGTPTCSA
Ga0184632_102948611	3300018075	Groundwater Sediment	MVIHYQPGRLRRNSDQPTAITNVVVATSPSSYRTSDIPL
Ga0184633_103527903	3300018077	Groundwater Sediment	MVTHYPPARLRRNSDQPTTITDALVATSGSSYRTGEIPLGTPTC
Ga0190275_132208181	3300018432	Soil	MVIHYPPERLRHNSDQPTAITNVLLATSGSSYRTGDIPLGTPTCSA
Ga0190274_122805101	3300018476	Soil	MVIHYPPERLRSNSDRPTAITNVLVTTAGSTYHTGDIALGTPTC
Ga0184641_10276303	3300019254	Groundwater Sediment	MVLHYPPARLRRNSDQPTAITDVLVATSGSSSRSGEIPLGTP
Ga0184641_13737811	3300019254	Groundwater Sediment	MVIHYEPGQIRRNSDQPTAITGVLLATQGSSYRSGEIPLGTPTCS
Ga0184641_13885911	3300019254	Groundwater Sediment	MVIHFTPAQLRRNSDRPTAITGVLVAGSPSIHAGTSDITLGTPTYS
Ga0184643_14552193	3300019255	Groundwater Sediment	MVIHYPPARLRRNSDQPTAITDVLINRSGSSCRSGDIPLGTP
Ga0184644_14264383	3300019269	Groundwater Sediment	MVTHYPPARLRYNSDQPTAITDVLINRSGSSSRSGEIPLGSPT
Ga0184642_15922472	3300019279	Groundwater Sediment	MVIHYPSGRLRRNSDRPTAITDVLLATSGSSYRAGDIPLGT
Ga0184642_17236682	3300019279	Groundwater Sediment	MVIHYEPGQIRRNSDQPTAITGVLLATQGSSYRSGEIPLGTPTCSSR
Ga0193705_10457183	3300019869	Soil	VIHYPSARLRRNSDQPTAITNVLVATAGSSSRPGD
Ga0193705_10820261	3300019869	Soil	MVIHDQPARLRQNSDQPTAITNVLVATAGSSSRPGDLPLAT
Ga0222624_10383001	3300021951	Groundwater Sediment	MVTHYEPARLRRAGDQPTAITDVLVATSASTYRTGDIPLG
Ga0222625_13702072	3300022195	Groundwater Sediment	MVTHYEPARLRRNRDQPSAITGVLVATSASTYRTGDI
Ga0207675_1015370311	3300026118	Switchgrass Rhizosphere	MVIHYPPERLRSNSDRPSAITDVLVATTGSSSTGEIS
Ga0208581_1042002	3300026704	Soil	MVIHYQPGRLRRNSDQPTAITDVLITTSGSSYTGDIPLGT
Ga0209875_10164713	3300027209	Groundwater Sand	MVIHYQPERLRYNSDQPTAITDVLVATSGSSCRTGEIPLG
Ga0209875_10208232	3300027209	Groundwater Sand	MVIHYQPGRLRRNSDQPTAITNVLVATSGSSARTGDIPLGT
Ga0209846_10099354	3300027277	Groundwater Sand	MVIHYPPARLRYNSDQPTAITNVLVATSGSSHTGEIPLGT
Ga0209461_101073331	3300027750	Agave	MVIHYPPARLRRNSDQPTAITDLLVATSGSSSPIGD
Ga0307298_102070673	3300028717	Soil	MVTHYPPERLRHNSDRPTAITNVLISTSGSSRQSGEIPL
Ga0307319_100749383	3300028722	Soil	MVIHYPPARLRRNSDQPTAITDVLITGSGSSSRTGDIPLGT
Ga0307290_100644351	3300028791	Soil	MVIHYPPARLRHNSDQPAAITNVLVTTSGSSSRTGEIPLGT
Ga0307305_104956871	3300028807	Soil	MVIHYPPARLRQNSDQPTAITDVLVATSGSSSRTGDLPLGTPTCSA
Ga0307310_103926431	3300028824	Soil	VIHHPPARLRQNSDQPTAITNVLVATAGSSSRPGD
Ga0307312_109736072	3300028828	Soil	MVLHYPPARLRRNSDQPTAITDVLVATSGSSSRSGEIPLGTPTCSAR
Ga0307278_103298543	3300028878	Soil	MVIHYPPARLRHNSDQPAAITNVLVTTSGSSSRTGEIPLGTPTCSA
Ga0307277_102730323	3300028881	Soil	MVTHYPPARLRHNSSGQPTAITNVLLTTSGSSSTGEIPLGPPTYSARS
Ga0307308_102591161	3300028884	Soil	MVIHHRSGRPRRNGDQPTAITDVLVATSRSSHRTGDIPLGIPTCS
Ga0308205_10316121	3300030830	Soil	MVIHYPPARLRYNSDQPTAITDVLVATSGSSSHTGDIPLGTPTC
Ga0308152_1010403	3300030831	Soil	MVIHYQPERLRRNSDQPTAITNVLVATSGSSSRTGDIPLGTP
Ga0308152_1015372	3300030831	Soil	MVTHYQPGRLRRNSDQPTAITNVLIATGSSHSTGDIPLGT
Ga0308152_1019543	3300030831	Soil	MVTHYPPERLRYNSDQPTAITNVLVATSESSSRTGEI
Ga0308152_1020601	3300030831	Soil	MVFHFTPNRLRRNSDQPTAITDVLVATSPSTYRTCD
Ga0308152_1048192	3300030831	Soil	MVIHYPPARLRHNSDQPTAITDVLVATSGSSSRIGEIPLGTP
Ga0308202_10185573	3300030902	Soil	MVIHYPPARLRHNSDQPSAITNVLVTTSGSSSRTGEIPLGT
Ga0308154_1033531	3300030986	Soil	MVTHYPPERLRYNSDQPTAITNVLVATSESSSRTGEILLGTPTCSARSS
Ga0308155_10053373	3300030987	Soil	MVIHYQPGRLRRNSDQPTAITNVVVATSPSSYRTSDIPLGTPTCS
Ga0308183_10731283	3300030988	Soil	MVIHYPPERLRHNSDRPTAITSVLVATSASSQSGEIPLGTPTC
Ga0308178_10204842	3300030990	Soil	MVIHYLPERLRYNSDQPTAITSVMVATSGSSSRTGEIPLGAPTC
Ga0308178_10217231	3300030990	Soil	MVIHYPPARLRHNSDQPAAITNVLVATSGSSSRTGELPLGTP
Ga0308185_10097633	3300031081	Soil	MVIHYPPERLRHNSDQPTAITNVLVTTAGSSHQTGEIPLGAPTCSA
Ga0308185_10128971	3300031081	Soil	MVIHHRSGRPRRNGDQPTAITDVLVATSRSSHRTGDIPLGIPTCSA
Ga0308185_10191653	3300031081	Soil	MVIHYPPARFRHNSDQPTAITNVLVATSGSSYTGDIPLGTPTCSART
Ga0308201_100996641	3300031091	Soil	MVTHYPPERLRHNSDRPTAITNVLISTSGSSRQSGEIPLG
Ga0308184_10082462	3300031095	Soil	MVIHFPPDRLRRNSDQPTAITDVLVATSGSSSRTGDIPLGTPTCS
Ga0308180_10094313	3300031100	Soil	MVTHYPPERLRYNSDQPTAITNVLVATSESSSRTGEIPLGTPTCSAH
Ga0308180_10265742	3300031100	Soil	MVIHYPPARLRYNSDQPTAITDVLVATSGSSYHTGDIPLGTPTCSA
Ga0308180_10374101	3300031100	Soil	MVTHYPPARLRHNSSGQPIAITNVLLTTSGSSSTGEIPL
Ga0308187_101126631	3300031114	Soil	MVIHYPPERLRHNSDRPTAITSVLVATSASSQSGEIPL
Ga0308187_103143183	3300031114	Soil	MVLHYQPERLRHNSDQPTAITNVLVATSGSSHQTSD
Ga0308187_104131422	3300031114	Soil	MVIHYQPERLRHNSDQPTAITNILVATSGSSCRTGDIPLGIPTCS
Ga0308151_10116981	3300031124	Soil	MVTHYQPGRLRRNSDQPTAITNVLIATGSSHSTGDIPLGTPTCS
Ga0308151_10213152	3300031124	Soil	MVIHYPPARLRHNSDRPTAITNVLVATSGSSHQTRDIP
Ga0308182_10211551	3300031125	Soil	MVIHYPPARLRHNSDRPTAITNVLVATSGSSHQTRDIPLGTP
Ga0308177_10022323	3300031423	Soil	MVTHYPPERLRYNSDQPTAITNVLVATSESSSRTGEIPLGT
Ga0308177_10085082	3300031423	Soil	MVTHYPPARLRYNSDQPTAITDVLINRSGSSSRSGEIPLGTP
Ga0308179_10224771	3300031424	Soil	VIHYPPARLRYNSDQPTAITNVLITASGSSHTGEIPLGTPTCS
Ga0308179_10361333	3300031424	Soil	MVIHYEPARLRRNSDQPTAITGVLAATSASTYRTGD
Ga0308179_10455883	3300031424	Soil	MVIHDQPARLRQNSDQPTAITNVLVATAGSSSRPGD
Ga0308150_10010042	3300031505	Soil	MVIHYPPARFRHNSDQPTAITNVLVATSGSSYTGDIPLGTPTCSGST
Ga0308150_10048181	3300031505	Soil	MVTHYPPERLRYNSDQPTAITNVLVATSESSSRTGEIPLGTPTCSAHS
Ga0307407_109302582	3300031903	Rhizosphere	MVIHYPPERLRRNSDRPTAITDVLVATSGSSSRIGDIPL
Ga0307407_116052111	3300031903	Rhizosphere	MVIHHPPARLRQNSDQPTAITDVLVATSGSSSRTGD
Ga0307407_116260701	3300031903	Rhizosphere	MVTHYPPARLRHNSDQPTAITNVLVATSGSFSNGEIPLG
Ga0307416_1002737434	3300032002	Rhizosphere	MVTRFPPDRLRRNSDRPTAITDVLVASSPSGYRTTDILLG
Ga0307416_1019226852	3300032002	Rhizosphere	MVIHYPPARLRHNSDQPTAITNVLVATSGSSSRPCEIPLG
Ga0307414_112991971	3300032004	Rhizosphere	MVIHYPPARLRHNSGRPTAITNVLVATSGSYATGEIPL
Ga0307414_115536441	3300032004	Rhizosphere	MVIHYQPERLRYNSDQPTAITNVLVATSGSSCRTGDLPLG
Ga0307411_114309751	3300032005	Rhizosphere	MVIHYQPERLRHNSDQPTAITNVLVATSGSSHRTRDIPLGTP
Ga0307415_1007940451	3300032126	Rhizosphere	MVIHYPPSQLRSDSDQPAAITNVLLATSGSSYRPR
Ga0307415_1010588441	3300032126	Rhizosphere	MVIHYPPARLRRNSDQPTAITNVLVTTSGSTRTGD
Ga0370540_11190_466_579	3300034448	Soil	MVIHYPPARLRYASDQPTAITNVLVATSGSSHQTRDIL
Ga0370545_049294_2_127	3300034643	Soil	MVIHFTPDRLRRNSDRPTAITDVLVAGSPSSYRTSDILLDTP
Ga0370548_082330_1_105	3300034644	Soil	MVIHYPPARLRYNSDQPTAITDVLVATSGSSSRSG
Ga0370541_007246_3_125	3300034680	Soil	MVIHYQPGRLRRNSDQPTAITNVVVATSPSSYRTSDIPLGT
Ga0370541_007325_215_322	3300034680	Soil	MVIHYPPARLRRNSDQPTAITGVLLATQGSSYRTG
Ga0370541_018405_637_768	3300034680	Soil	MVLHYQPERLRYNSDQPTAITNVLVATSGSSCRTGEIPLGTPTC
Ga0370541_022275_594_719	3300034680	Soil	MVIHYPPERLRYNSDQPTAITDVLVATSGSSSHTGEIPLGTP
Ga0370541_024882_2_130	3300034680	Soil	MVIHFTPDRLCRNSDRPTAITDVLVASSPATSPATYRTCDIPL
Ga0370541_033921_2_142	3300034680	Soil	MVIHYPAQQLRHDGGRPAAITNVLVATSGSSHQTREIPLGTPTCSAR
Ga0370546_012870_2_130	3300034681	Soil	MVIHYPPARLRHNSDQPAAITNVLVATSGSSSRTGELPLGTPT
Ga0370546_015040_861_968	3300034681	Soil	MVTHYPPERLRYNSDQPTAITNVLVATSESSSRTGE
Ga0370546_034891_604_729	3300034681	Soil	MVLHYPPARLRYNSDQPTAITNVLVATAGSSSRPGDIPLGIP
Ga0370546_077789_432_551	3300034681	Soil	MVIHYPSGRLRRNSDRPTAITDVLLATSGSSYRAGDIPLG
Ga0370546_089313_2_121	3300034681	Soil	MVIHYQPARLRRNSDQPTALTNVLLASGTGEVPLGTPTCS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077954

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences