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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F077867 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 117 |
| Average Sequence Length | 49 residues |
| Representative Sequence | FLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF |
| Number of Associated Samples | 105 |
| Number of Associated Scaffolds | 117 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 101 |
| AlphaFold2 3D model prediction | No |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.094 % of family members) |
| Environment Ontology (ENVO) | Unclassified (26.496 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (50.427 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 47.83% β-sheet: 0.00% Coil/Unstructured: 52.17% | Feature Viewer |
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| Powered by Feature Viewer | |||||
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| Pfam ID | Name | % Frequency in 117 Family Scaffolds |
|---|---|---|
| PF00528 | BPD_transp_1 | 32.48 |
| PF01074 | Glyco_hydro_38N | 3.42 |
| PF00580 | UvrD-helicase | 0.85 |
| PF02355 | SecD_SecF | 0.85 |
| PF06781 | CrgA | 0.85 |
| COG ID | Name | Functional Category | % Frequency in 117 Family Scaffolds |
|---|---|---|---|
| COG0383 | Alpha-mannosidase | Carbohydrate transport and metabolism [G] | 3.42 |
| COG0210 | Superfamily I DNA or RNA helicase | Replication, recombination and repair [L] | 0.85 |
| COG0341 | Preprotein translocase subunit SecF | Intracellular trafficking, secretion, and vesicular transport [U] | 0.85 |
| COG0342 | Preprotein translocase subunit SecD | Intracellular trafficking, secretion, and vesicular transport [U] | 0.85 |
| COG1074 | 3’-5’ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) | Replication, recombination and repair [L] | 0.85 |
| COG3973 | DNA helicase IV | Replication, recombination and repair [L] | 0.85 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 17.09% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 13.68% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 11.11% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 8.55% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 7.69% |
| Permafrost | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost | 5.13% |
| Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 4.27% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 3.42% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 3.42% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 3.42% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 2.56% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 1.71% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.71% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.71% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.71% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 1.71% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 1.71% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.71% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 0.85% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.85% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.85% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.85% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.85% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.85% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.85% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 0.85% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 0.85% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
| 3300001536 | Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina | Environmental | Open in IMG/M |
| 3300001538 | Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina | Environmental | Open in IMG/M |
| 3300005171 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 | Environmental | Open in IMG/M |
| 3300005345 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG | Environmental | Open in IMG/M |
| 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005440 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG | Environmental | Open in IMG/M |
| 3300005454 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 | Environmental | Open in IMG/M |
| 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Host-Associated | Open in IMG/M |
| 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Environmental | Open in IMG/M |
| 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Environmental | Open in IMG/M |
| 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Environmental | Open in IMG/M |
| 3300005559 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 | Environmental | Open in IMG/M |
| 3300005568 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 | Environmental | Open in IMG/M |
| 3300005569 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 | Environmental | Open in IMG/M |
| 3300005713 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2) | Environmental | Open in IMG/M |
| 3300006163 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG | Environmental | Open in IMG/M |
| 3300006574 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006575 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006791 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 | Environmental | Open in IMG/M |
| 3300006800 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 | Environmental | Open in IMG/M |
| 3300006871 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Host-Associated | Open in IMG/M |
| 3300007258 | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 | Environmental | Open in IMG/M |
| 3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
| 3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Host-Associated | Open in IMG/M |
| 3300010039 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56 | Environmental | Open in IMG/M |
| 3300010046 | Tropical forest soil microbial communities from Panama - MetaG Plot_36 | Environmental | Open in IMG/M |
| 3300010325 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG | Environmental | Open in IMG/M |
| 3300010337 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015 | Environmental | Open in IMG/M |
| 3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
| 3300010371 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 | Environmental | Open in IMG/M |
| 3300010396 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300010403 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 | Environmental | Open in IMG/M |
| 3300011994 | Permafrost microbial communities from Nunavut, Canada - A7_65cm_12M | Environmental | Open in IMG/M |
| 3300012096 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG | Environmental | Open in IMG/M |
| 3300012198 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG | Environmental | Open in IMG/M |
| 3300012208 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG | Environmental | Open in IMG/M |
| 3300012210 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG | Environmental | Open in IMG/M |
| 3300012349 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG | Environmental | Open in IMG/M |
| 3300012354 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG | Environmental | Open in IMG/M |
| 3300012401 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_1 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300012532 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG | Environmental | Open in IMG/M |
| 3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
| 3300012885 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 | Environmental | Open in IMG/M |
| 3300012914 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2 | Environmental | Open in IMG/M |
| 3300012923 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG | Environmental | Open in IMG/M |
| 3300012925 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012948 | Tropical forest soil microbial communities from Panama - MetaG Plot_14 | Environmental | Open in IMG/M |
| 3300012958 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG | Environmental | Open in IMG/M |
| 3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
| 3300012975 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015 | Environmental | Open in IMG/M |
| 3300012989 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG | Environmental | Open in IMG/M |
| 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Host-Associated | Open in IMG/M |
| 3300013501 | Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M | Environmental | Open in IMG/M |
| 3300013768 | Permafrost microbial communities from Nunavut, Canada - A35_65cm_0M | Environmental | Open in IMG/M |
| 3300014157 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG | Environmental | Open in IMG/M |
| 3300015356 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300015359 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015 | Environmental | Open in IMG/M |
| 3300016294 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 | Environmental | Open in IMG/M |
| 3300017654 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG | Environmental | Open in IMG/M |
| 3300017997 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex | Environmental | Open in IMG/M |
| 3300018054 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1 | Environmental | Open in IMG/M |
| 3300018061 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1 | Environmental | Open in IMG/M |
| 3300018081 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1 | Environmental | Open in IMG/M |
| 3300018468 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111 | Environmental | Open in IMG/M |
| 3300019279 | Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300019362 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2) | Environmental | Open in IMG/M |
| 3300019867 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1 | Environmental | Open in IMG/M |
| 3300019996 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2 | Environmental | Open in IMG/M |
| 3300020018 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2 | Environmental | Open in IMG/M |
| 3300021073 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo | Environmental | Open in IMG/M |
| 3300021078 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo | Environmental | Open in IMG/M |
| 3300021080 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300022195 | Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300022534 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1 | Environmental | Open in IMG/M |
| 3300025893 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026331 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes) | Environmental | Open in IMG/M |
| 3300026342 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes) | Environmental | Open in IMG/M |
| 3300026343 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes) | Environmental | Open in IMG/M |
| 3300026523 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes) | Environmental | Open in IMG/M |
| 3300026528 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes) | Environmental | Open in IMG/M |
| 3300027862 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027882 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028787 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381 | Environmental | Open in IMG/M |
| 3300028807 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186 | Environmental | Open in IMG/M |
| 3300028828 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202 | Environmental | Open in IMG/M |
| 3300028878 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117 | Environmental | Open in IMG/M |
| 3300028884 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195 | Environmental | Open in IMG/M |
| 3300030905 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030993 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031094 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031114 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031793 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21 | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI10216J12902_1177247202 | 3300000956 | Soil | HQVATAKVFRFDGSDQLPGAFGDTWGAALQDVIQKPTTTNIKKILSTFQGQIAGKFGS* |
| A1565W1_119678911 | 3300001536 | Permafrost | AFGDTWGFALQDVIQKPGDIKNILSTFQKKIQGQF* |
| A10PFW1_113306222 | 3300001538 | Permafrost | VRAEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIKGQF* |
| Ga0066677_102283071 | 3300005171 | Soil | FDGSDQMPGAFGDTWGFALQDVIQHPGNISSILSKFQNQIKGQWGS* |
| Ga0070692_102361702 | 3300005345 | Corn, Switchgrass And Miscanthus Rhizosphere | DLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQSKIQGQF* |
| Ga0070673_1017248212 | 3300005364 | Switchgrass Rhizosphere | LFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF* |
| Ga0070705_1000588073 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | SDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQNKIQGQF* |
| Ga0066687_101495582 | 3300005454 | Soil | DLLPGAFGDTWGFALQDVIQHPSNIKSILSTFQGKIQGQF* |
| Ga0068867_1009131681 | 3300005459 | Miscanthus Rhizosphere | AEAHQLATAKTFVFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF* |
| Ga0070706_1005027292 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | EVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF* |
| Ga0070707_1021941871 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | PSVLARAEAHQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQGKIQGQF* |
| Ga0070699_1001119274 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | TFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKNILSTFQSKIQGQF* |
| Ga0070699_1001725661 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | TFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKNILSTFQGKIQGQF* |
| Ga0066700_110191412 | 3300005559 | Soil | PTVLTRKEGKQLSSAKIVRFDGSDQMPGAFGDTWGFALQDVIQHPGNISSILSKFQGQIKGQWGS* |
| Ga0066703_103498251 | 3300005568 | Soil | RKEGKQLSSAKIVRFDGSDQMPGAFGDTWGFALQDVIQHPGNISSILSKFQGQIKGQWGS |
| Ga0066705_109524452 | 3300005569 | Soil | AKTFLFDGSDLLPGAFGDTWGFALQDVIQHPSNIKSILSTFQGKIQGQF* |
| Ga0066905_1002632383 | 3300005713 | Tropical Forest Soil | DLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF* |
| Ga0070715_102035911 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | FVFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF* |
| Ga0074056_116037771 | 3300006574 | Soil | KTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQNKIQGQF* |
| Ga0074053_119905992 | 3300006575 | Soil | PGAFGDTWGFALQDVIQHPGNIKSILSTFQNKIQGQF* |
| Ga0066653_102932131 | 3300006791 | Soil | TWGFALQSVIQNPSTANIKKILSGFQSKIQGQFGS* |
| Ga0066660_106848662 | 3300006800 | Soil | LASAKIVRFDGSDQMPGAFGDTWGFALQNVIQHPNQIKSILSKFQNQIKGKWGS* |
| Ga0075434_1005975001 | 3300006871 | Populus Rhizosphere | FGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF* |
| Ga0099793_106774632 | 3300007258 | Vadose Zone Soil | LPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF* |
| Ga0066709_1016555762 | 3300009137 | Grasslands Soil | DQLPGAIGDTWGDTLQNVIQKPGNVKSLMSDFQKKIAGQFG* |
| Ga0066709_1017546062 | 3300009137 | Grasslands Soil | FDGSDQLPGAFGDTWGAALQNVIQKPSTSSVKKILSTFQGQIEGKFGS* |
| Ga0114129_126976761 | 3300009147 | Populus Rhizosphere | AKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF* |
| Ga0105241_119208922 | 3300009174 | Corn Rhizosphere | SPLVRAEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF* |
| Ga0126309_112174661 | 3300010039 | Serpentine Soil | DHLPGAFGDTGGDTLQNVVQKPGDAKSIMSDFQKKIAGQFG* |
| Ga0126384_107186771 | 3300010046 | Tropical Forest Soil | GSDLLPGAFGDTWGFALQDVIQKPGNIKSILSDFQNKIKGQF* |
| Ga0134064_104202512 | 3300010325 | Grasslands Soil | LPGAFGDTWGFALQDVIQHPSNIKSILSTFQGKIQGQF* |
| Ga0134062_106234242 | 3300010337 | Grasslands Soil | LGRKEAAQLAAAKTFLFDGSDLLPGAFGDTWGFALQNVIQNPSTANIRKILAGFQSKIQGQFGS* |
| Ga0134062_107689181 | 3300010337 | Grasslands Soil | VNQRASAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQGKIQGQF* |
| Ga0126379_132080342 | 3300010366 | Tropical Forest Soil | RAEAHQLATAKTFLFDGSDQLPGAFGDTWGFALQDVIQHPGNIKSILSDFQNKIKGQF* |
| Ga0134125_100517314 | 3300010371 | Terrestrial Soil | AFGDTWGFALQDVIQHPGNIKSILSTFQNKIQGQF* |
| Ga0134126_112389701 | 3300010396 | Terrestrial Soil | LLPGAFGDTWGFALQDVIQHPGNIKSILSTFQNKIQGQF* |
| Ga0134122_116898842 | 3300010400 | Terrestrial Soil | GEAKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGQF* |
| Ga0134123_114672212 | 3300010403 | Terrestrial Soil | FGDTWGFALQDVIQHPGNIKSILSTFQNKIQGQF* |
| Ga0120157_10171513 | 3300011994 | Permafrost | AFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF* |
| Ga0137389_102565743 | 3300012096 | Vadose Zone Soil | FLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF* |
| Ga0137389_115696112 | 3300012096 | Vadose Zone Soil | LPGNFGDQWGAALQDVIQKPGNIKNILSTFQKKSEGQFG* |
| Ga0137364_101373643 | 3300012198 | Vadose Zone Soil | LATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF* |
| Ga0137364_107347542 | 3300012198 | Vadose Zone Soil | DGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF* |
| Ga0137376_105871572 | 3300012208 | Vadose Zone Soil | DLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF* |
| Ga0137378_101051324 | 3300012210 | Vadose Zone Soil | FDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF* |
| Ga0137387_106026532 | 3300012349 | Vadose Zone Soil | FGDTWGFALQDVIQHPSNIKSILSTFQNKIQGQF* |
| Ga0137366_105329861 | 3300012354 | Vadose Zone Soil | NFGDQWGAALQEVIQKPGNIKSIMSTFQSKIQGQF* |
| Ga0134055_11565962 | 3300012401 | Grasslands Soil | FGDTWGFALQDVIQHPSNIKSILSTFQGKIQGQF* |
| Ga0137373_102833133 | 3300012532 | Vadose Zone Soil | QVKSAKVFRFDGSDQLPGAFGDTWGDTLQNVIQKPGDAKSIMSDFQKKIAGQFG* |
| Ga0137373_109293561 | 3300012532 | Vadose Zone Soil | PSVLARGEAKQLAGAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF* |
| Ga0137397_101075783 | 3300012685 | Vadose Zone Soil | SDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF* |
| Ga0157287_10299142 | 3300012885 | Soil | GSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKITGQF* |
| Ga0157297_101611342 | 3300012914 | Soil | AYPTKLVRAEVVQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQSKIKGQF* |
| Ga0137359_106466971 | 3300012923 | Vadose Zone Soil | LATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGQF* |
| Ga0137419_110633612 | 3300012925 | Vadose Zone Soil | YPSPLVRAEVKQLASAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF* |
| Ga0126375_109097551 | 3300012948 | Tropical Forest Soil | HQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSDFQNKIKGQF* |
| Ga0164299_104835202 | 3300012958 | Soil | RAEAHQLATAKTFVFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF* |
| Ga0164302_107473912 | 3300012961 | Soil | DGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIKGQF* |
| Ga0134110_104160061 | 3300012975 | Grasslands Soil | EVQQLASAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPSNIKSILSTFQGKIQGQF* |
| Ga0164305_115522551 | 3300012989 | Soil | DGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQKKIQGQF* |
| Ga0157374_127934012 | 3300013296 | Miscanthus Rhizosphere | SDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQSKIQGQF* |
| Ga0120154_10176561 | 3300013501 | Permafrost | FLFDGSDLLPGAFGDTWGFALQDVIQKPGDIKNILSTFQKKIQGQF* |
| Ga0120154_10864192 | 3300013501 | Permafrost | AFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF* |
| Ga0120155_11789702 | 3300013768 | Permafrost | QLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGQF* |
| Ga0134078_102910402 | 3300014157 | Grasslands Soil | PAKAYPNLLVRKEAHQVATAKVFRFDGSDQLPGAFGDTWGSALQNVIQKPTTSNIKKILSTFQDQIAGKFGS* |
| Ga0134073_101447542 | 3300015356 | Grasslands Soil | LASAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQGKIQGQF* |
| Ga0134085_103868392 | 3300015359 | Grasslands Soil | LFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF* |
| Ga0182041_115083322 | 3300016294 | Soil | AAKTVLFDGSDQMPGAFGDTWGFALQKVAQNPSTSNIKSILSGFQNQIKSQWGK |
| Ga0134069_10608222 | 3300017654 | Grasslands Soil | VFRFDGSDQLPGAFGDTWGAALQNVIQKPSTSSVKKILSTFQGQIEGKFGS |
| Ga0184610_11229861 | 3300017997 | Groundwater Sediment | NLFVRSEARQLAAAKTFLFDGSHLLPGAFGDTWGFALQDVIQKPGNIKGILSTFQKKIQGEF |
| Ga0184621_102980261 | 3300018054 | Groundwater Sediment | AEVKHLATPKTFLFDGSDLPLGSFGPAWGLALQDVIQKPGNIKSILSTFQNKIQGQF |
| Ga0184619_105589021 | 3300018061 | Groundwater Sediment | AQVKTAKVFRFDGSDQLPGAFGDTWGDTLQNVVQKPGDAKNIMSDFQKKISGQFG |
| Ga0184625_105200972 | 3300018081 | Groundwater Sediment | LARGEAKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQTKIQGQF |
| Ga0066662_108165022 | 3300018468 | Grasslands Soil | PGAFGDTWGAALQDVIQKPSNIKNIMAAFQKKIQGQF |
| Ga0184642_12963822 | 3300019279 | Groundwater Sediment | LFDGSDLLPGAFGDTWGFALQDVIQKPGDIKSILSTFQNKIKGQF |
| Ga0173479_102583152 | 3300019362 | Soil | DGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIKGQF |
| Ga0193704_10556041 | 3300019867 | Soil | LLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIKGQF |
| Ga0193693_10161163 | 3300019996 | Soil | SVLARAEAHQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGKF |
| Ga0193721_10940091 | 3300020018 | Soil | SAAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGDIKSILSTFQNKIKGQF |
| Ga0210378_100339683 | 3300021073 | Groundwater Sediment | QLAGAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF |
| Ga0210381_101676532 | 3300021078 | Groundwater Sediment | AEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF |
| Ga0210382_101053672 | 3300021080 | Groundwater Sediment | LLPGAFGDTWGFALQDVIQKPGDIKSILSTFQNKIKGQF |
| Ga0126371_138861302 | 3300021560 | Tropical Forest Soil | VNSPNKRVSTSAYPNLLVRAEAHQLATAKTFLFDGSDQLPGAFGDTWGFALQDVIQHPGNIKSILSDFQNKIKGQF |
| Ga0222625_15072982 | 3300022195 | Groundwater Sediment | FDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGQF |
| Ga0224452_10137651 | 3300022534 | Groundwater Sediment | SDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF |
| Ga0224452_12161432 | 3300022534 | Groundwater Sediment | FLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF |
| Ga0207682_105521392 | 3300025893 | Miscanthus Rhizosphere | APRSRAEAHQLATAKTFVFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQSKIQGQF |
| Ga0207684_100996061 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | VKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKNILSTFQGKIQGQF |
| Ga0207684_103901801 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | AEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF |
| Ga0207646_116979882 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | PSVLARAEAHQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQGKIQGQF |
| Ga0207694_104739681 | 3300025924 | Corn Rhizosphere | IFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQSKIQGQF |
| Ga0207704_116526491 | 3300025938 | Miscanthus Rhizosphere | KTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF |
| Ga0207640_120603801 | 3300025981 | Corn Rhizosphere | FDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQSKIQGQF |
| Ga0209267_12024331 | 3300026331 | Soil | TAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF |
| Ga0209057_10757671 | 3300026342 | Soil | FRFDGSDQLPGAFGDTWGSALQNVIQKPTTSNIKKILSTFQDQIAGKFGS |
| Ga0209057_11816672 | 3300026342 | Soil | DGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF |
| Ga0209159_11167052 | 3300026343 | Soil | AAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF |
| Ga0209808_12762392 | 3300026523 | Soil | RATAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPSNIKSILSTFQSKIQGQF |
| Ga0209378_11871422 | 3300026528 | Soil | SDLLPGAFGDTWGFALQDVIQHPSNIKSILSTFQGKIQGQF |
| Ga0209701_101385281 | 3300027862 | Vadose Zone Soil | SPLVRAEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF |
| Ga0209590_103457541 | 3300027882 | Vadose Zone Soil | LPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGQF |
| Ga0268265_125313292 | 3300028380 | Switchgrass Rhizosphere | LVRAEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF |
| Ga0268264_102462023 | 3300028381 | Switchgrass Rhizosphere | FDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQNKIQGQF |
| Ga0307323_103170971 | 3300028787 | Soil | AKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF |
| Ga0307323_103520171 | 3300028787 | Soil | FDGSDLLPGAFGDTWGFALQDVIQKPGDIKSILSTFQNKIKGQF |
| Ga0307305_100343604 | 3300028807 | Soil | PGAFGDTWGFALQDVIQKPGDIKSILSTFQNKIKGQF |
| Ga0307312_105731182 | 3300028828 | Soil | TAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF |
| Ga0307278_100389511 | 3300028878 | Soil | AYPSPLVRAEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF |
| Ga0307308_100135674 | 3300028884 | Soil | LPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF |
| Ga0307308_105766022 | 3300028884 | Soil | ATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGQF |
| Ga0308200_10585902 | 3300030905 | Soil | VRAEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQSKIQ |
| Ga0308190_11726662 | 3300030993 | Soil | VPAKSYPSLFVRAEAKQLASAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF |
| Ga0308199_10231311 | 3300031094 | Soil | LVRAEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGQF |
| Ga0308187_102060712 | 3300031114 | Soil | LPGAFGDTWGFALQDVIQKPGNIKSILATFQGKIQGQF |
| Ga0307469_116622591 | 3300031720 | Hardwood Forest Soil | DLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF |
| Ga0318548_106519871 | 3300031793 | Soil | TAKTVLFDGSDQMPGAFGDTWGFALQKVAQNPSTSNINSILKGFQNQIKSQWGK |
| Ga0306926_119177162 | 3300031954 | Soil | LATAKTVLFDGSDQMPGAFGDTWGFALQKVAQNPSTSNINSILKGFQNQIKSQWGK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |