Metagenome / Metatranscriptome Family F077860

Basic Information
Family ID	F077860
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	47 residues
Representative Sequence	GDPVTAEFTAPAAGEYEIACSEFCGRGHGQMKAALVSISVTKTNR
Number of Associated Samples	100
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.71 %
% of genes near scaffold ends (potentially truncated)	97.44 %
% of genes from short scaffolds (< 2000 bps)	96.58 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Most Common Taxonomy
Group	Bacteria (94.872 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (15.385 % of family members)
Environment Ontology (ENVO)	Unclassified (40.171 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (74.359 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.11% β-sheet: 10.96% Coil/Unstructured: 84.93%
Feature Viewer

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Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF07681	DoxX	23.08
PF00116	COX2	15.38
PF00149	Metallophos	5.98
PF13560	HTH_31	5.13
PF13620	CarboxypepD_reg	4.27
PF08281	Sigma70_r4_2	2.56
PF12704	MacB_PCD	1.71
PF03358	FMN_red	1.71
PF02517	Rce1-like	1.71
PF13419	HAD_2	1.71
PF02077	SURF4	1.71
PF01569	PAP2	0.85
PF01019	G_glu_transpept	0.85
PF05015	HigB-like_toxin	0.85
PF01323	DSBA	0.85
PF01833	TIG	0.85
PF00069	Pkinase	0.85
PF02687	FtsX	0.85
PF12844	HTH_19	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	24.79
COG4270	Uncharacterized membrane protein	Function unknown [S]	23.08
COG1622	Heme/copper-type cytochrome/quinol oxidase, subunit 2	Energy production and conversion [C]	15.38
COG4263	Nitrous oxide reductase	Inorganic ion transport and metabolism [P]	15.38
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.42
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	1.71
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	1.71
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.85
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	0.85

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.87 %
Unclassified	root	N/A	5.13 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.87 %
Unclassified	root	N/A	5.13 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.87 %
Unclassified	root	N/A	5.13 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	40.17 %
Unclassified	root	N/A	5.13 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.71 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	29.06 %
Unclassified	root	N/A	5.13 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.71 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.06 %
Unclassified	root	N/A	5.13 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1.71 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.06 %
Unclassified	root	N/A	5.13 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1.71 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.06 %
Unclassified	root	N/A	5.13 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	1.71 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.06 %
Unclassified	root	N/A	5.13 %
Caldibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Caldibacillus	0.85 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.06 %
Unclassified	root	N/A	5.13 %
Caldibacillus debilis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Caldibacillus → Caldibacillus debilis	0.85 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig76260	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	704	Open in IMG/M
3300002075\|JGI24738J21930_10066987	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300004480\|Ga0062592_100326606	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300004643\|Ga0062591_100604881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	970	Open in IMG/M
3300004801\|Ga0058860_10098246	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300005290\|Ga0065712_10160556	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1304	Open in IMG/M
3300005294\|Ga0065705_10689555	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	658	Open in IMG/M
3300005334\|Ga0068869_100793954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	813	Open in IMG/M
3300005345\|Ga0070692_10518823	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300005367\|Ga0070667_101721198	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300005435\|Ga0070714_100031938	All Organisms → cellular organisms → Bacteria	4395	Open in IMG/M
3300005436\|Ga0070713_101320601	Not Available	699	Open in IMG/M
3300005457\|Ga0070662_100653180	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300005459\|Ga0068867_101351432	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300005459\|Ga0068867_102009909	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300005467\|Ga0070706_100414601	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300005468\|Ga0070707_101783984	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005471\|Ga0070698_101157086	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300005471\|Ga0070698_101829447	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300005518\|Ga0070699_100651281	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300005518\|Ga0070699_102055995	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300005526\|Ga0073909_10646701	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300005536\|Ga0070697_100531162	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300005538\|Ga0070731_10260602	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M
3300005543\|Ga0070672_101740323	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300005617\|Ga0068859_102072662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300005713\|Ga0066905_101324992	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300005840\|Ga0068870_10281564	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300005842\|Ga0068858_101534769	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300005843\|Ga0068860_102035525	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300006163\|Ga0070715_10247215	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300006358\|Ga0068871_100880492	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300006844\|Ga0075428_100270195	All Organisms → cellular organisms → Bacteria	1829	Open in IMG/M
3300006852\|Ga0075433_10949607	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300006852\|Ga0075433_11009111	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300006854\|Ga0075425_100032804	All Organisms → cellular organisms → Bacteria	5771	Open in IMG/M
3300006854\|Ga0075425_100530395	All Organisms → cellular organisms → Bacteria	1355	Open in IMG/M
3300006854\|Ga0075425_100762527	All Organisms → cellular organisms → Bacteria	1110	Open in IMG/M
3300006854\|Ga0075425_102203769	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300006903\|Ga0075426_10698646	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300006904\|Ga0075424_100467286	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300006969\|Ga0075419_10278470	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300006969\|Ga0075419_11475517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300007076\|Ga0075435_101562451	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300007265\|Ga0099794_10722726	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300009012\|Ga0066710_104897586	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300009098\|Ga0105245_12593274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Caldibacillus → Caldibacillus debilis	560	Open in IMG/M
3300009098\|Ga0105245_12594185	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300009101\|Ga0105247_11863303	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300009147\|Ga0114129_12082997	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685	Open in IMG/M
3300009147\|Ga0114129_13429733	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300009148\|Ga0105243_12740147	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300009156\|Ga0111538_12885985	Not Available	601	Open in IMG/M
3300009162\|Ga0075423_10528044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1242	Open in IMG/M
3300009162\|Ga0075423_11782151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300009174\|Ga0105241_12600535	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300009176\|Ga0105242_11055345	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	824	Open in IMG/M
3300009551\|Ga0105238_10820449	All Organisms → cellular organisms → Bacteria → Acidobacteria	946	Open in IMG/M
3300009551\|Ga0105238_11899937	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300010373\|Ga0134128_10453953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1430	Open in IMG/M
3300011119\|Ga0105246_10274249	All Organisms → cellular organisms → Bacteria → Acidobacteria	1350	Open in IMG/M
3300012096\|Ga0137389_10637875	All Organisms → cellular organisms → Bacteria → Acidobacteria	915	Open in IMG/M
3300012189\|Ga0137388_11429985	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300012202\|Ga0137363_11051489	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300012350\|Ga0137372_11125542	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300012362\|Ga0137361_10509673	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300012683\|Ga0137398_10726706	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300012923\|Ga0137359_10478714	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300012923\|Ga0137359_11658007	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300012955\|Ga0164298_10932510	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300012957\|Ga0164303_11254468	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300012985\|Ga0164308_10893660	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	782	Open in IMG/M
3300013297\|Ga0157378_13025253	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300013308\|Ga0157375_10090041	All Organisms → cellular organisms → Bacteria	3126	Open in IMG/M
3300014968\|Ga0157379_10207066	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1775	Open in IMG/M
3300014969\|Ga0157376_12734073	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300015264\|Ga0137403_11280296	Not Available	579	Open in IMG/M
3300015372\|Ga0132256_101237621	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	860	Open in IMG/M
3300015373\|Ga0132257_100631944	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1325	Open in IMG/M
3300015373\|Ga0132257_103921044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300015374\|Ga0132255_102332300	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300015374\|Ga0132255_103467853	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300015374\|Ga0132255_105304832	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300016445\|Ga0182038_10711447	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300021178\|Ga0210408_11127693	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300022504\|Ga0242642_1084411	Not Available	539	Open in IMG/M
3300022756\|Ga0222622_10369809	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300025899\|Ga0207642_10629733	All Organisms → cellular organisms → Bacteria → Acidobacteria	670	Open in IMG/M
3300025907\|Ga0207645_10475535	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300025910\|Ga0207684_11155815	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300025922\|Ga0207646_10282089	All Organisms → cellular organisms → Bacteria	1501	Open in IMG/M
3300025924\|Ga0207694_11231145	All Organisms → cellular organisms → Bacteria → Acidobacteria	633	Open in IMG/M
3300025933\|Ga0207706_11227295	All Organisms → cellular organisms → Bacteria → Acidobacteria	622	Open in IMG/M
3300025940\|Ga0207691_11760039	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300025942\|Ga0207689_10410131	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1130	Open in IMG/M
3300025945\|Ga0207679_10193428	All Organisms → cellular organisms → Bacteria → Acidobacteria	1693	Open in IMG/M
3300026035\|Ga0207703_10896183	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300026035\|Ga0207703_10907481	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300026088\|Ga0207641_11131978	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
3300026095\|Ga0207676_10850223	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300026469\|Ga0257169_1070990	Not Available	563	Open in IMG/M
3300027821\|Ga0209811_10085766	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1117	Open in IMG/M
3300027842\|Ga0209580_10198804	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300027880\|Ga0209481_10697488	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300027894\|Ga0209068_10200311	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300027903\|Ga0209488_11201224	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300028799\|Ga0307284_10081611	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1186	Open in IMG/M
3300028828\|Ga0307312_10232985	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300031226\|Ga0307497_10420232	Not Available	643	Open in IMG/M
3300031547\|Ga0310887_11144726	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300031740\|Ga0307468_102148178	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300031831\|Ga0318564_10296996	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	713	Open in IMG/M
3300032013\|Ga0310906_10598031	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300032180\|Ga0307471_104239166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300032205\|Ga0307472_101780730	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	611	Open in IMG/M
3300032211\|Ga0310896_10100696	All Organisms → cellular organisms → Bacteria	1292	Open in IMG/M
3300034820\|Ga0373959_0005274	All Organisms → cellular organisms → Bacteria	2116	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	53.85%
Environmental	Environmental	45.30%
Engineered	Engineered	0.85%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	52.99%
Terrestrial	Environmental → Terrestrial	43.59%
Aquatic	Environmental → Aquatic	1.71%
Human	Host-Associated → Human	0.85%
Modeled	Engineered → Modeled	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.09%
Sediment	Environmental → Aquatic → Sediment	1.71%
Digestive System	Host-Associated → Human → Digestive System	0.85%
Roots	Host-Associated → Plants → Roots	0.85%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	27.35%
Loam	Environmental → Terrestrial → Soil → Loam	11.97%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.71%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.85%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.85%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	27.35%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.13%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.85%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.85%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.85%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.38%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.26%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.40%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.13%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.13%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.27%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.27%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.42%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.56%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.71%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.85%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.85%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0260.00005060	2166559005	Simulated	DNGEPVTADFTAPAAGEYEIACSEFCGRGHAQMRAALVSVSVTKTDR
JGI24738J21930_100669871	3300002075	Corn Rhizosphere	NSGGPVTVDFTAPPEGRYEILCSELCGFGHGQMKAALVSIGPIQTSR*
Ga0062592_1003266061	3300004480	Soil	TIEFVAPPAGQYEIACSEFCGIGHGQMKAMLVSTSTTQMSR*
Ga0062591_1006048811	3300004643	Soil	GGDPVTVEFTAPAAGRYEIACSEFCGSGHGHMKAAFVSVGPTQTSR*
Ga0058860_100982461	3300004801	Host-Associated	KSGDAAIVEFTAPSAGRYEIACSEFCGRGHGQMKAVLVSIGPTQTSR*
Ga0065712_101605563	3300005290	Miscanthus Rhizosphere	FSIRDLHIDAQIPRSGNVVVEFTAPGTGRYEIACSEFCGSGHGQMKAALVSVAATPSAR*
Ga0065705_106895551	3300005294	Switchgrass Rhizosphere	VPKGGEPVVAEFTAPPAGRYEVACSEFCGGGHGQMKTALVSVAPTTTHR*
Ga0068869_1007939543	3300005334	Miscanthus Rhizosphere	DFTAPLAGSYDIACSEFCGTGHGHMKAALVSIGPTQTSR*
Ga0070692_105188231	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	IPKLKIDVPVPKSGEPVTVEFTAPAAGRYEIACSEFCGRGHGQMKAALVSGGPTQTSR*
Ga0070667_1017211981	3300005367	Switchgrass Rhizosphere	AIVEFVAPPPGRFEVACSEFCGSGHGQMKAALVSVAPLQVNN*
Ga0070714_1000319381	3300005435	Agricultural Soil	RVPKSGEAVTVEFTAPPAGRYQIACSEFCGRGHGQMKAELVSVGAGR*
Ga0070713_1013206011	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	QVPKSGEPVTVDFTAPPPGRYEIACSEFCGSGHGQMKAALVSIGPTPTSR*
Ga0070662_1006531801	3300005457	Corn Rhizosphere	QIPPAGEGVVQFTAPPAGRYEITCSEFCGSGHGRMKAALVSVAQAQTTR*
Ga0068867_1013514322	3300005459	Miscanthus Rhizosphere	IPKGGRPVTVEFTAPPAGRYEIECSDFCGFGHRKMKAELVSAAPIR*
Ga0068867_1020099091	3300005459	Miscanthus Rhizosphere	GEGVVQFTAPPAGRYEITCSEFCGSGHGRMKAALVSVAQAQTTR*
Ga0070706_1004146011	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	PKLKIDLHIPDSGDPVTAEFTAPVAGEYDIACSEFCGRGHGQMKAALVSISVIKTDR*
Ga0070707_1017839841	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	IPDSGDPVTAEFTAPAAGEYEIACSEFCGHGHGQMKAALVSTSVTKTNR*
Ga0070698_1011570861	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	TAEFTAPAAGEYEIACSEFCGRGHGQMKAALVSISVTKTNR*
Ga0070698_1018294472	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VEFTAPPAGQYEIACSEFCGSGHGQMKAALISSAAVTTTR*
Ga0070699_1006512812	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	GDPVTAEFTAPAAGEYEIACSEFCGRGHGQMKAALVSISVTKTNR*
Ga0070699_1020559951	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	TVEFIAPPPGRFEIACSEFCGSGHGQMKAALISVAAVTTNR*
Ga0073909_106467011	3300005526	Surface Soil	KGGEPVVAEFIAPPAGRYEVACSEFCGSGHGQMKTALVSVASTTTHR*
Ga0070697_1005311621	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	PDSGDPVTAEFTAPAAGEYEIACSEFCGRGHAQMKAALVSISVTKTNR*
Ga0070731_102606023	3300005538	Surface Soil	APGEYEIACSEFCGRGHAQMKAALVSVGPNKTNR*
Ga0070672_1017403232	3300005543	Miscanthus Rhizosphere	KGGEPVVAEFIAPPAGRYEVACSEFCGSGHGQMKTALVSVAPTTTHR*
Ga0068859_1020726621	3300005617	Switchgrass Rhizosphere	LKIDVQVPKGGDPVAVEFTAPAAGRYDIACSEFCGSGHGHMKAALVSAGPTQTNR*
Ga0066905_1013249923	3300005713	Tropical Forest Soil	QIPRSGNVVVEFTAPREGRYEIACSEFCGSGHGQMKAALVSVAATPTGAPQ*
Ga0068870_102815641	3300005840	Miscanthus Rhizosphere	APRAGRYEIACSEFCGSGHGHMKAAVVSVAPTPTAGS*
Ga0068858_1015347691	3300005842	Switchgrass Rhizosphere	IDLHIPDNGEPATADFTAPAAGEYEIACSEFCGRGHGQMKAALVSVSATRTNR*
Ga0068860_1020355251	3300005843	Switchgrass Rhizosphere	AVPKSGAPVTVEFPAPAEGRYEIACSEFCGTGHGKMKAALVSSGPRQTTR*
Ga0070715_102472151	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	GFAVPTLKIDVQVAKSDGEPAIVEFVAPPPGRFEVACSEFCGRGHGQMKAALVSIAPL*
Ga0068871_1008804921	3300006358	Miscanthus Rhizosphere	PAVGEYEIACSEFCGAGHARMKATLVSVAPPTRTNR*
Ga0075428_1002701951	3300006844	Populus Rhizosphere	IPQLKIDLRIPKGGDLIVAEFIAPSAGRYEVACSEFCGIGHRQMKAALVSVAPTTTHR*
Ga0075433_109496071	3300006852	Populus Rhizosphere	DERIPKTGDPVTVEFTAPPAGHYEIACSEFCGFGHGHMKAELISVAPVTTTR*
Ga0075433_110091113	3300006852	Populus Rhizosphere	PAAGEYEIACSEFCGRGHGQMKAALVSTSVTTTSR*
Ga0075425_1000328048	3300006854	Populus Rhizosphere	TAEFTAPAAGEYEIACSEFCGRGHGQMKAALVSISVTKTDR*
Ga0075425_1005303953	3300006854	Populus Rhizosphere	PAAGEYEIACSEFCGRGHAQMKAALVSISVTKTNR*
Ga0075425_1007625273	3300006854	Populus Rhizosphere	PAAGEYEIACSEFCGRGHAQMKAALVSVGTTKTNR*
Ga0075425_1022037692	3300006854	Populus Rhizosphere	IDLHVPDNGEPVTTEFTAPAAGEYEIACSEFCGHGHGQMKAALLSISATRTNH*
Ga0075426_106986461	3300006903	Populus Rhizosphere	SGDPVTAEFTAPAAGEYEIACSEFCGRGHAQMKAALVSVSVTKTNR*
Ga0075424_1004672864	3300006904	Populus Rhizosphere	IDERIPKTGDPVTVEFTAPPAGHYEIACSEFCGFGHGHMKAELISVAPVTTTR*
Ga0075419_102784701	3300006969	Populus Rhizosphere	KVKVNVVVPKGGQQVTAEFTAPPPGRYEIACSEFCGLGHHGMKAELVSVAPPGGPTSR*
Ga0075419_114755171	3300006969	Populus Rhizosphere	KGGEPVVAEFTAPPAGRYEVACSEFCGSGHGQMKTALVSVAPTTTHR*
Ga0075435_1015624511	3300007076	Populus Rhizosphere	AIPKLKIDLHVPDSGEPVTAEFTAPAAGEYEIACSEFCGRGHAQMKAAVVSVGPTKTNR*
Ga0099794_107227262	3300007265	Vadose Zone Soil	DLHIPDSGDSVMAEFTAPAAGEYEIACSEFCGRGHGQMKAALVSISVTKTNR*
Ga0066710_1048975861	3300009012	Grasslands Soil	KLKVDLRIPDSGEPVTAEFTAPTAGEYEIACSEFCGRGHGQMKAALVSVSFTRTDP
Ga0105245_125932741	3300009098	Miscanthus Rhizosphere	SIPTLKIDVQVPKGGDPATVAFTAPAAGRYEIACSEFCGSGHGHMKAALVSIAPIPTNR*
Ga0105245_125941852	3300009098	Miscanthus Rhizosphere	SIPKLKIDVRVQKSGDAAIVEFTAPPAGRYEIACSEFCGRGHGQMKAVLVSIGPTQTSR*
Ga0105247_118633031	3300009101	Switchgrass Rhizosphere	AVGEYEIACSEFCGAGHARMKATLVSVAPPTRTNR*
Ga0114129_120829971	3300009147	Populus Rhizosphere	GGDLIVAEFIAPSAGRYEVACSEFCGIGHRQMKAALVSVAPTTTHR*
Ga0114129_134297331	3300009147	Populus Rhizosphere	KSGAEPTVVEFVAPPPGRLEIACSEFCGSGHGHMKAALISIDPL*
Ga0105243_127401472	3300009148	Miscanthus Rhizosphere	RDLKIDVQIPPAGEGVVQFTAPPAGRYEITCSEFCGSGHGRMKAALVSVAPTRTER*
Ga0111538_128859851	3300009156	Populus Rhizosphere	PVTTEFTAPAAGEYEIACSEFCGHGHGQMKAALLSISATRTNH*
Ga0075423_105280443	3300009162	Populus Rhizosphere	KIDLQVPKGGEPVVAEFTAPPAGRYEVACSEFCGSGHGQMKTALVSVAPTTTPR*
Ga0075423_117821511	3300009162	Populus Rhizosphere	TAPPAGRYEVACSEFCGSGHGQMKTTLVSVAPTTTTR*
Ga0105241_126005351	3300009174	Corn Rhizosphere	SGDAAIVEFTAPPAGRYEIACSEFCGRGHGQMKAVLVSIGPTQTSR*
Ga0105242_110553453	3300009176	Miscanthus Rhizosphere	GFSIPKLKIDVQAPTGGDPVTVEFTAPAAGRYEIACSEFCGRGHSQMKAALISVGLTQASH*
Ga0105238_108204491	3300009551	Corn Rhizosphere	PPAGRYEITCSEFCGSGHGRMKAALVSVAQAQTTR*
Ga0105238_118999371	3300009551	Corn Rhizosphere	TAPPAGRYEIACSEFCGRGHGQMKAVLVSIGPTQTSR*
Ga0134128_104539531	3300010373	Terrestrial Soil	VVEFRAPRAGRYDIACSEFCGSGHGQMKAALLSTADARELR*
Ga0105246_102742491	3300011119	Miscanthus Rhizosphere	PAIVEFVAPPPGRFEVACSEFCGSGHGQMKAVLVSVAPLQVNN*
Ga0137389_106378751	3300012096	Vadose Zone Soil	LVEFVAPRPGRFDIACSDFCGSGHGQMKAALISIAPFVTHD*
Ga0137388_114299851	3300012189	Vadose Zone Soil	SLKIDVQIPKSGGDPVLVEFVAPRPGRFDIACSDFCGSGHGQMKAALISIAPFVTHD*
Ga0137363_110514891	3300012202	Vadose Zone Soil	AIPKLKIDLHIPDSGDPATAEFTAPGAGEYEIACSEFCGRGHGQMKAALISISVTKTNG*
Ga0137372_111255422	3300012350	Vadose Zone Soil	DFIAPPAGDYEIACSEFCGRGHGQMKAALVSVSPTKTNR*
Ga0137361_105096733	3300012362	Vadose Zone Soil	IDLHIPDSGEPVTAEFTAPAAGEYEIACSEFCGRGHGQMKAALVSISITKTNR*
Ga0137398_107267061	3300012683	Vadose Zone Soil	THSFSIPKLKIDLRIPDSGDPVTAEFTAPAVGEYEIACSEFCGRGHGQMKAALVSVSVTRTDR*
Ga0137359_104787141	3300012923	Vadose Zone Soil	PDTGDPVTAEFTAPAAGEYEIACSEFCGRGHGQMKAALVSISITKTNR*
Ga0137359_116580071	3300012923	Vadose Zone Soil	KLKIDLHIADNGEPVTADFTAPAAGEYEIACSEFCGRGHAQMKAALVSISATKTNR*
Ga0164298_109325102	3300012955	Soil	KIDLHISDSGEPVAADFTAPAAGEYEIACSEFCGRGHGQMKAALVSVSVTKTNRGRL*
Ga0164303_112544682	3300012957	Soil	VQFTAPPAGRYEITCSEFCGSGHGRMKAALVSVAQAQTTR*
Ga0164308_108936603	3300012985	Soil	HGSDVQIPRRGNVVVEFTAPHAGRYEIACSELCGSGHKQMKAAIVSVAATPMAN*
Ga0157378_130252532	3300013297	Miscanthus Rhizosphere	AFVAPAVGEYEIACSEFCGAGHARMKATLVSVAPPTRTNR*
Ga0157375_100900416	3300013308	Miscanthus Rhizosphere	AIVEFVAPPPGRFEVACSEFCGSGHGQMKAALVSVAPLQANN*
Ga0157379_102070663	3300014968	Switchgrass Rhizosphere	VAVAFTAPAAGRYEIACSEFCGSGHGHMKAALVSVGPTETSR*
Ga0157376_127340731	3300014969	Miscanthus Rhizosphere	IDVQVPKSGDPVVVEFVAPPPGRFEITCSEFCGIGHGRMKAALVSDVPVQTNH*
Ga0137403_112802962	3300015264	Vadose Zone Soil	LRIPDTGDPVTAEFTAPAAGEYEIACSEFCGRGHGQMKAALVSISVIKTDR*
Ga0132256_1012376211	3300015372	Arabidopsis Rhizosphere	EPVTVDFTAPPAGRYEIACSEFCGSGHGQMKAALISSAAVTTTR*
Ga0132257_1006319442	3300015373	Arabidopsis Rhizosphere	LQVPKGGEPVVAEFTAPPAGRYEVSCSEFCGSGHGQMKTALVSVAPTTTHR*
Ga0132257_1039210441	3300015373	Arabidopsis Rhizosphere	VEFTAPPAGRYEIACSEFCGSGHGQMKAALISVVAVTTTR*
Ga0132255_1023323002	3300015374	Arabidopsis Rhizosphere	IDVRVQKSGDAAIVEFTAPPAGRYEIACSEFCGRGHGQMKAVLVSIGPTQTSR*
Ga0132255_1034678532	3300015374	Arabidopsis Rhizosphere	IDVRVPKTGEPVTVDFTAPPAGRYEIACSEFCGSGHGQMKAALISSAAVTTTR*
Ga0132255_1053048321	3300015374	Arabidopsis Rhizosphere	GFAIPKLKIDLHVPDNGEPVTTEFTAPAAGEYEIACSEFCGHGHGQMKAALLSISATRTNH*
Ga0182038_107114471	3300016445	Soil	TVAFVAPAAGEYEIACSEFCGAGHARMKATLVSAAPPTRTNR
Ga0210408_111276931	3300021178	Soil	SGEPATAEFVAPAAGEYEIACSEFCGRGHGQMKAALVTVSAVRTGH
Ga0242642_10844111	3300022504	Soil	DSGDPVTAEFTAPSAGEYEIACSEFCGRGHGQMKAALVSTSVTRTNR
Ga0222622_103698091	3300022756	Groundwater Sediment	KGGDPVAVEFTAPAAGRYEIACSEFCGSGHGHMKAALVSVGPTQTNR
Ga0207642_106297332	3300025899	Miscanthus Rhizosphere	PALKIDVQVPKSDGDPAVVEFVAPPPGRFEVACSEFCGSGHGQMKAAVVSVAPL
Ga0207645_104755353	3300025907	Miscanthus Rhizosphere	VEFTAPPAGRYEIACSEFCGRGHGQMKAVLVSIGPTQTSR
Ga0207684_111558152	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	AISPAVGEYEIACSEFCGHGHGQMKAALVSISVTKTNR
Ga0207646_102820893	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	PVTAEFTAPAAGEYEIACSEFCGRGHAQMKAALVSISVTKTNR
Ga0207694_112311451	3300025924	Corn Rhizosphere	VPALKIDVQVPKSDGDPAVVEFVAPPPGRFEVACSEFCGSGHGQMKAAVVSVAPL
Ga0207706_112272951	3300025933	Corn Rhizosphere	QIPPAGEGVVQFTAPPAGRYEITCSEFCGSGHGRMKAALVSVAQAQTTR
Ga0207691_117600392	3300025940	Miscanthus Rhizosphere	TAPAAGRYDIACSEFCGSGHGHMKAALVSAGPTQTNR
Ga0207689_104101313	3300025942	Miscanthus Rhizosphere	MARVLILGQDPDTVDFTAPLAGSYDIACSEFCGTGHGHMKAALVSIGPTQTSR
Ga0207679_101934281	3300025945	Corn Rhizosphere	AGEGVVQFTAPPAGRYEITCSEFCGSGHGRMKAALVSVAQAQTTR
Ga0207703_108961831	3300026035	Switchgrass Rhizosphere	PDGGDPVTADFTAPAAGEYEITCSEFCGRGHGQMKAVLISVAATSTNR
Ga0207703_109074812	3300026035	Switchgrass Rhizosphere	IDLHIPDNGEPATADFTAPAAGEYEIACSEFCGRGHGQMKAALVSVSATRTNR
Ga0207641_111319781	3300026088	Switchgrass Rhizosphere	VTVEFTAPTAGRYEIACSEFCGSGHGQMKAAVVSVGPTHTSRQHKRGDS
Ga0207676_108502231	3300026095	Switchgrass Rhizosphere	FTAPAAGEYEITCSEFCGRGHGQMKAVLVSVAANRTNR
Ga0257169_10709901	3300026469	Soil	EFTAPAAGEYEIACSEFCGHGHGQMKAALVSISVTKTNR
Ga0209811_100857662	3300027821	Surface Soil	KIDLQVPKGGEPVVAEFIAPPAGRYEVACSEFCGSGHGQMKTALVSVASTTTHR
Ga0209580_101988043	3300027842	Surface Soil	HIPDNGDPVTAEFTAPSAGEYEIACSEFCGRGHGQMKAALVSTSVTRTSR
Ga0209481_106974882	3300027880	Populus Rhizosphere	LKIDLHVPKGGEPVVAEFTAPPAGRYEVACSEFCGSGHGQMKTALVSVAPTTTHR
Ga0209068_102003111	3300027894	Watersheds	VTVEFTAPAVGRYEIACSEFCGSGHGQMKAALVSVSPTQTSR
Ga0209488_112012241	3300027903	Vadose Zone Soil	PDNGEPVTADFTAPAAGEYEIACSEFCGRGHAQMKAALVSISATRTNR
Ga0307284_100816111	3300028799	Soil	VMVEFTAPAAGRYEIACSEFCGSGHGQMKAALVSVGPTQTSR
Ga0307312_102329852	3300028828	Soil	VEFTAPAAGRYEIACSEFCGSGHGHMKAALVSVGPTQTNR
Ga0307497_104202321	3300031226	Soil	PAAGEYEIACSEFCGRGHGQMKAALVSTSATRTNR
Ga0310887_111447261	3300031547	Soil	GGEPVVAEFTAPPAGRYEVSCSEFCGSGHGQMKTALVSVAPTTTPR
Ga0307468_1021481782	3300031740	Hardwood Forest Soil	FTAPAAGRYDIACSEFCGSGHGHMKAALVSAGPTQTNR
Ga0318564_102969961	3300031831	Soil	PKGGETVTVAFVAPAAGEYEIACSEFCGAGHARMKATLVSAAPPTRTNR
Ga0310906_105980311	3300032013	Soil	VPKLKIDRHVPAGGEPVTIELTAPSPGRFEIVCSEFCGRGHEVMRAAIVSRSTQSSR
Ga0307471_1042391661	3300032180	Hardwood Forest Soil	IPDSGDPVTAEFTAPAAGEYEIACSEFCGRGHAQMKAALVSISVTKTNR
Ga0307472_1017807302	3300032205	Hardwood Forest Soil	TAPPAGRFEIACSEFCGIGHNRMKAELVSVGPTLTSR
Ga0310896_101006963	3300032211	Soil	KLKIDRHVPAGGGPVTIELTAPAPGRFEIVCSEFCGRGHEVMRAAIVSRSTQSSR
Ga0373959_0005274_3_128	3300034820	Rhizosphere Soil	TADFTAPAAGEYEIACSEFCGRGHAQMKAALVSISATRTDR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077860

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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