Metagenome / Metatranscriptome Family F077849

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F077849
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	50 residues
Representative Sequence	MAGLTIRTRLILLTTAGLLVLIATNAYLTRALSENSAGMVEAAGLLAG
Number of Associated Samples	100
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.87 %
% of genes near scaffold ends (potentially truncated)	99.15 %
% of genes from short scaffolds (< 2000 bps)	91.45 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (47.008 % of family members)
Environment Ontology (ENVO)	Unclassified (48.718 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (51.282 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 60.53% β-sheet: 0.00% Coil/Unstructured: 39.47%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF11845	DUF3365	82.05
PF00072	Response_reg	8.55
PF02518	HATPase_c	2.56
PF12860	PAS_7	1.71
PF13561	adh_short_C2	0.85
PF03631	Virul_fac_BrkB	0.85
PF07372	DUF1491	0.85
PF13185	GAF_2	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.85
COG5447	Uncharacterized conserved protein, DUF1491 domain	Function unknown [S]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	98.29 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	94.02 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	27.35 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.71 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.71 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.71 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.71 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.85 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.85 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.71 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.85 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.85 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.71 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.85 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.85 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.85 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100481599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1118	Open in IMG/M
3300003351\|JGI26346J50198_1014044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	775	Open in IMG/M
3300004082\|Ga0062384_100772231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	669	Open in IMG/M
3300004092\|Ga0062389_101892729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	775	Open in IMG/M
3300004635\|Ga0062388_102459230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	546	Open in IMG/M
3300005187\|Ga0066675_10039187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2846	Open in IMG/M
3300005363\|Ga0008090_14850521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	559	Open in IMG/M
3300005436\|Ga0070713_101098601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300005575\|Ga0066702_10058408	All Organisms → cellular organisms → Bacteria → Proteobacteria	2098	Open in IMG/M
3300006046\|Ga0066652_102002679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	516	Open in IMG/M
3300006163\|Ga0070715_10524211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	682	Open in IMG/M
3300006797\|Ga0066659_11464095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	571	Open in IMG/M
3300006800\|Ga0066660_11145085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300010046\|Ga0126384_10420125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1134	Open in IMG/M
3300010046\|Ga0126384_10479395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1068	Open in IMG/M
3300010335\|Ga0134063_10408389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	667	Open in IMG/M
3300010359\|Ga0126376_12359352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	578	Open in IMG/M
3300010376\|Ga0126381_101668018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	921	Open in IMG/M
3300011120\|Ga0150983_15407633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	680	Open in IMG/M
3300011120\|Ga0150983_15763577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	739	Open in IMG/M
3300012208\|Ga0137376_10726166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	856	Open in IMG/M
3300012683\|Ga0137398_10645930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	733	Open in IMG/M
3300012685\|Ga0137397_10875744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	666	Open in IMG/M
3300012958\|Ga0164299_10897005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	643	Open in IMG/M
3300015242\|Ga0137412_10883989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	649	Open in IMG/M
3300016294\|Ga0182041_10010656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5231	Open in IMG/M
3300016357\|Ga0182032_10938130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	737	Open in IMG/M
3300016422\|Ga0182039_11457308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
3300018085\|Ga0187772_10769876	All Organisms → cellular organisms → Bacteria → Proteobacteria	693	Open in IMG/M
3300018431\|Ga0066655_11321519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300018468\|Ga0066662_12991459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300020140\|Ga0179590_1235340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300020583\|Ga0210401_10322112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1407	Open in IMG/M
3300021088\|Ga0210404_10874964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300021171\|Ga0210405_11205598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	560	Open in IMG/M
3300021361\|Ga0213872_10226329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	795	Open in IMG/M
3300021478\|Ga0210402_11352309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	639	Open in IMG/M
3300021560\|Ga0126371_11117603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	927	Open in IMG/M
3300021560\|Ga0126371_12484445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	627	Open in IMG/M
3300022530\|Ga0242658_1120599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	649	Open in IMG/M
3300022718\|Ga0242675_1110295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300022722\|Ga0242657_1192511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	560	Open in IMG/M
3300024288\|Ga0179589_10430823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	607	Open in IMG/M
3300026312\|Ga0209153_1172057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	784	Open in IMG/M
3300026547\|Ga0209156_10338967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	659	Open in IMG/M
3300027643\|Ga0209076_1157851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	633	Open in IMG/M
3300027775\|Ga0209177_10430655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	535	Open in IMG/M
3300028047\|Ga0209526_10032045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3695	Open in IMG/M
3300028047\|Ga0209526_10033204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3632	Open in IMG/M
3300029636\|Ga0222749_10527099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	642	Open in IMG/M
3300031122\|Ga0170822_11409413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	801	Open in IMG/M
3300031231\|Ga0170824_128962946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	681	Open in IMG/M
3300031446\|Ga0170820_16952305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
3300031469\|Ga0170819_15855567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300031474\|Ga0170818_114622571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300031545\|Ga0318541_10433334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	735	Open in IMG/M
3300031546\|Ga0318538_10427657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	717	Open in IMG/M
3300031549\|Ga0318571_10330123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300031561\|Ga0318528_10345766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	798	Open in IMG/M
3300031564\|Ga0318573_10100162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1486	Open in IMG/M
3300031573\|Ga0310915_10168989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1519	Open in IMG/M
3300031573\|Ga0310915_10684316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300031573\|Ga0310915_11157519	All Organisms → cellular organisms → Bacteria → Proteobacteria	536	Open in IMG/M
3300031681\|Ga0318572_10111550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1554	Open in IMG/M
3300031681\|Ga0318572_10315414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	925	Open in IMG/M
3300031713\|Ga0318496_10595639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	611	Open in IMG/M
3300031718\|Ga0307474_10448747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1008	Open in IMG/M
3300031719\|Ga0306917_10066732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2479	Open in IMG/M
3300031723\|Ga0318493_10810406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	528	Open in IMG/M
3300031724\|Ga0318500_10710467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300031736\|Ga0318501_10033436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2295	Open in IMG/M
3300031736\|Ga0318501_10690429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	563	Open in IMG/M
3300031740\|Ga0307468_100391083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1057	Open in IMG/M
3300031744\|Ga0306918_10161529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1663	Open in IMG/M
3300031747\|Ga0318502_10519501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	714	Open in IMG/M
3300031751\|Ga0318494_10100069	All Organisms → cellular organisms → Bacteria	1597	Open in IMG/M
3300031753\|Ga0307477_10234239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1273	Open in IMG/M
3300031753\|Ga0307477_10374186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	978	Open in IMG/M
3300031765\|Ga0318554_10400960	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300031777\|Ga0318543_10130539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1096	Open in IMG/M
3300031779\|Ga0318566_10207918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	972	Open in IMG/M
3300031781\|Ga0318547_10008143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	4649	Open in IMG/M
3300031793\|Ga0318548_10634172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300031796\|Ga0318576_10018239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2742	Open in IMG/M
3300031799\|Ga0318565_10268174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	830	Open in IMG/M
3300031819\|Ga0318568_10862413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300031821\|Ga0318567_10260601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	975	Open in IMG/M
3300031833\|Ga0310917_10137793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1602	Open in IMG/M
3300031879\|Ga0306919_10308693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1202	Open in IMG/M
3300031880\|Ga0318544_10103618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1073	Open in IMG/M
3300031890\|Ga0306925_10101183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3067	Open in IMG/M
3300031890\|Ga0306925_10511777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1277	Open in IMG/M
3300031896\|Ga0318551_10267230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	958	Open in IMG/M
3300031897\|Ga0318520_10094119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1671	Open in IMG/M
3300031910\|Ga0306923_10581929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1258	Open in IMG/M
3300031941\|Ga0310912_10258807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1341	Open in IMG/M
3300031945\|Ga0310913_10943712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300031954\|Ga0306926_10861262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1088	Open in IMG/M
3300031959\|Ga0318530_10321046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	641	Open in IMG/M
3300031962\|Ga0307479_10409831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1340	Open in IMG/M
3300031981\|Ga0318531_10206100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	886	Open in IMG/M
3300032041\|Ga0318549_10154224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1023	Open in IMG/M
3300032059\|Ga0318533_10108586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1929	Open in IMG/M
3300032059\|Ga0318533_10146036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1671	Open in IMG/M
3300032059\|Ga0318533_10383438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1025	Open in IMG/M
3300032060\|Ga0318505_10343406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	705	Open in IMG/M
3300032066\|Ga0318514_10075042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1680	Open in IMG/M
3300032066\|Ga0318514_10761245	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300032091\|Ga0318577_10234194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	879	Open in IMG/M
3300032174\|Ga0307470_10461822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	916	Open in IMG/M
3300032180\|Ga0307471_100709447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1171	Open in IMG/M
3300032180\|Ga0307471_102270439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	684	Open in IMG/M
3300033289\|Ga0310914_11046949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	716	Open in IMG/M
3300033289\|Ga0310914_11101307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	695	Open in IMG/M
3300033289\|Ga0310914_11110518	All Organisms → cellular organisms → Bacteria → Proteobacteria	692	Open in IMG/M
3300033289\|Ga0310914_11630065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300033290\|Ga0318519_10491361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	738	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.15%
Host-Associated	Host-Associated	0.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.73%
Aquatic	Environmental → Aquatic	3.42%
Plants	Host-Associated → Plants	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.73%
Freshwater	Environmental → Aquatic → Freshwater	3.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.89%
Loam	Environmental → Terrestrial → Soil → Loam	5.98%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	66.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.27%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	47.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.55%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.13%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.27%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.85%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1004815991	3300002245	Forest Soil	MARLTIRTRLILLTSVGLLVLIATNAYLTKALRENSAGMVEAA
JGI26346J50198_10140441	3300003351	Bog Forest Soil	MARLTIRTRLILLASAALLVLIATNFYLTRTLSENSAGMIKAAGLLKGIEQA
Ga0062384_1007722312	3300004082	Bog Forest Soil	MMSQLTIRTRLILLSSILLLVLIGTNFYLNRKLAENSAGTVKAAELLGV
Ga0062389_1018927292	3300004092	Bog Forest Soil	VAVAQLMARVTIRTRLILLSSVLLFVLVGTNFYLNRELAENSA
Ga0062388_1024592302	3300004635	Bog Forest Soil	MMARLTIRTRLILLTCGGLFVLIATNAYLTKKLAENSAGMVTAAELLKSIE
Ga0066675_100391871	3300005187	Soil	MARLTIRTRLMLLTCAGLFVLIATNAYLTKKIAENSAGMVT
Ga0008090_148505211	3300005363	Tropical Rainforest Soil	VPWLTIRTRLILLTSAGLLVVIVTNAYLTHALSENSGAMVEAAGLLKGIEHADSAQIAFGEVRYWM
Ga0070713_1010986012	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MMAWLTIRTRLMLLTCAGLFVLIATNAYLTKKLAENSAGMVTAAELLKSIEEANSAQIAFGE
Ga0066702_100584081	3300005575	Soil	MARLKIRTRLMLLTCAGLFVLIATNAYLTKKIAENSAGMVTAAE
Ga0066652_1020026791	3300006046	Soil	MARLTIRTRLMLLTCAGLFVLIATNAYLTKKIAENSAGMVTA
Ga0070715_105242112	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MIARLTIRTRLILLTCAGLFVLIATNAYLTKKLAENSAGMVTAADLLKSIEEANSAQI
Ga0066659_114640951	3300006797	Soil	MARLTIRTRLILLTSVGLLVLIATNAYLTRALSENSAGM
Ga0066660_111450852	3300006800	Soil	MMAWLTIRTRLMLLTCAGLFVLIATNAYLTKKLAENSAG
Ga0126384_104201251	3300010046	Tropical Forest Soil	MVGLTIRTRLILLTSAGLLVLVATNGYLTRALSENSAGMVEAAALLA
Ga0126384_104793951	3300010046	Tropical Forest Soil	MGRLTIRTRLILLTSAGLLVLIATNAYLTRALRENSAGMVEAAS
Ga0134063_104083892	3300010335	Grasslands Soil	MARLTIRTRLILLTSAGLLVLIATNGYLTRALSENSAGMVEAVGLLAGIE
Ga0126376_123593522	3300010359	Tropical Forest Soil	MGRLTIRTRLILLTSVGLLVLVATNAYLTNALRENSAGMVEAASLLAGIEQADKAQIAFG
Ga0126381_1016680181	3300010376	Tropical Forest Soil	MMERLPIRTRLILLSGALLIFLLATNFYLNRRLAESSA
Ga0150983_154076332	3300011120	Forest Soil	MTSVGLLVLIATNAYLTKALRENSAGMVVAAGLLGGIEQADKAQIAFGEERYWMT
Ga0150983_157635771	3300011120	Forest Soil	MNPMIARLTIRTRLILLTCAGLFVLIATNAYLTKKLAENSAGMV
Ga0137376_107261661	3300012208	Vadose Zone Soil	MARLTIRTRLILLTSVGLLVLIATNAYLTRALSEN
Ga0137398_106459302	3300012683	Vadose Zone Soil	MMAWLTIRTRLMLLTCAGLFVLIATNAYLTKKLAEN*
Ga0137397_108757441	3300012685	Vadose Zone Soil	MARLTIRTRLILLTSVGLLVLVATNAYLTNALRENSAGMVEAASLLAGIEQA
Ga0164299_108970052	3300012958	Soil	MARLTIRTRLILLTSVGLLVLVATNAYLTRVLRENSAGMVKAAGLLAGIEQADKAQIAFG
Ga0137412_108839892	3300015242	Vadose Zone Soil	MMAWLTIRTRLMLLTCAGLFVLIATNAYLTKKLAENSAGM
Ga0182041_100106561	3300016294	Soil	MARLTIRTRLILLASAALLVLIATNLYLTRALGEN
Ga0182032_109381302	3300016357	Soil	MARLTIRTRLVLLTCAGLLVLIVTNAYLTKKLAENSAGMVTAA
Ga0182039_114573082	3300016422	Soil	MTGLTIRMRLILLTAAGLLVLVATNFYLTRALGDNSTGMVKAAGLL
Ga0187772_107698761	3300018085	Tropical Peatland	MAGLTIRTRLILLTTAGLLVIVATNAYLIRALSENSAGMVKATGLLAGIEQADRAQIA
Ga0066655_113215192	3300018431	Grasslands Soil	MARLTIRTRLILLTSVGLLVLVATNAYLTRALRENSAGMIEAAGLLAGIEQADK
Ga0066662_129914591	3300018468	Grasslands Soil	MVARLTIRTRLILLTCAGLFVLMASNAYLTKKLAENSAG
Ga0179590_12353402	3300020140	Vadose Zone Soil	MMARLTIRTRLMLLTCAGLFVLIATNAYLTKKLAENSAGM
Ga0210401_103221123	3300020583	Soil	MMDRLTIRTRLMLLTCAGLFVLIATNAYLTKKLAE
Ga0210404_108749642	3300021088	Soil	MPGLTIRARLILLASVGLLVLVATNAYLTRALSENSAG
Ga0210405_112055982	3300021171	Soil	MARLTIRTRLMLLTCAGLFVLIATNAYLTKKLAENSAGMVTAAELLKSIEEANSAQIAF
Ga0213872_102263292	3300021361	Rhizosphere	MAGLTIRTRLILLTTAGLLVIVATNAYLIRALSENSAGMV
Ga0210402_113523092	3300021478	Soil	MMARLTIRTRLMLLTCAGLFVLIATNAYLTKKLAENSAGMVTAAEL
Ga0126371_111176031	3300021560	Tropical Forest Soil	MAGLTIRTRLILLTTAGLLVIVATNAYLTRALSENSAGMVKATGLLAGIEQADRAQIAF
Ga0126371_124844452	3300021560	Tropical Forest Soil	MARLTIRTRLILLTSAGLLVLIATNAYLTRALRENSAGMVEAASLLAGIE
Ga0242658_11205992	3300022530	Soil	MARLTIRTRLMLLTCAGLFVLIATNAYLTKKLAENSAGMVTAAELLKSIEE
Ga0242675_11102952	3300022718	Soil	MMARLTIRTRLMLLTCAGLFVLIATNAYLTKKLAENSAGMVT
Ga0242657_11925111	3300022722	Soil	MMARLTIRTRLMLLTCAGLFVLIATNAYLTKKLAENSAGMVTAAELLKSIEE
Ga0179589_104308231	3300024288	Vadose Zone Soil	MARLTIRTRLMLLTCAGLFVLIATNAYLTKKLAENSAGMVTAAELLKSIEEANSAQIAFG
Ga0209153_11720571	3300026312	Soil	MARLTIRTRLMLLTCAGLFVLIATNAYLTKKIAENSAGMITAA
Ga0209156_103389672	3300026547	Soil	MMARLTIRTRLMLLTCAGLFVLIATNAYLTKKLAENSAGMVTAAELLKSIEEAN
Ga0209076_11578512	3300027643	Vadose Zone Soil	MARLTIRTRLILLTSVGLLVLVATNAYLTRVLRENSAGMVEAASLLAGIEQ
Ga0209177_104306551	3300027775	Agricultural Soil	MLAWLTIRTRLMLLTCAGLFVLIATNAYLTKKLAENSAGMVTAAELLKSIEEANSA
Ga0209526_100320451	3300028047	Forest Soil	MARLTIRTRLILLTSVGLLVLVATNAYLTNALRENSAGMVEAASLLAGIEQADKAQIAFGEERYWM
Ga0209526_100332046	3300028047	Forest Soil	MVRLTIRTRLILMTSVGLLVLIATNAYLTKALRENSAGMVEAASLLAGIEQADKAQIAFGEERYWMT
Ga0222749_105270992	3300029636	Soil	MMAWLTIRTRLMLLTCAGLFVLIATNAYLTKKLAENSAGMVIAAELLRSIEE
Ga0170822_114094132	3300031122	Forest Soil	MDRLTIRTRLMLLTCAGLFVLIATNAYLTKKLAENSAGMVTAAELLQSIEE
Ga0170824_1289629462	3300031231	Forest Soil	MARLTIRTRLILLTSVGLLVLVATNAYLTRELRENSAGMVEAAGLLAGIEQADKA
Ga0170820_169523052	3300031446	Forest Soil	MIARLTIRTRLILLTCAGLFVLIATNAYLTKKLAENSAGMITAAD
Ga0170819_158555672	3300031469	Forest Soil	MAGLTIRMRLILLASAGLLVLVATNAYLTRALSENSAGMVKAA
Ga0170818_1146225711	3300031474	Forest Soil	MIARLTIRTRLILLTCAGLFVLIATNAYLTKKLAENSAGMITAADLLK
Ga0318541_104333341	3300031545	Soil	MAGLTIRTRLILLTTAGLLVLIATNAYLTRALSENSAGMVEAAGLLAGIEQADRAQIAF
Ga0318538_104276572	3300031546	Soil	MARLTIRTRLILLTCAGLFVLIAANAYLTKKLAENSAGM
Ga0318571_103301231	3300031549	Soil	MARLTIRTRLILLASAALLVLIATNCYLTRTLSENSAGMVKAAGLLKGIE
Ga0318528_103457661	3300031561	Soil	MARLTIRTRLILLTCAGLFVLIAANAYLTKKLAENSAGMVTAADLLKSIEEANSAQIAFG
Ga0318573_101001621	3300031564	Soil	MAGLTIRTQLILLTTAGLLVLVATNFYLTRALGENSAGMVEAAGLLAGIEQADSAQIAFG
Ga0310915_101689894	3300031573	Soil	MAGLTIRTQLILLTTAGLLVLVATNFYLTRALGEN
Ga0310915_106843161	3300031573	Soil	MAGLTIRMRLILLTAAGLLVLVATNFYLTRALGDNSAGMVKAAGLLAGIEQADS
Ga0310915_111575191	3300031573	Soil	MAGLTIRTRLILLTTAGLLVLIATNAYLTRALSENSAGMVEAAGLLAGIEQADSAQIAF
Ga0318572_101115501	3300031681	Soil	MAQLTIRTRLILLAGAALLVLIATNFYLTRTLRENSAGMVKA
Ga0318572_103154141	3300031681	Soil	MTGLTIRMRLILLTAAGLLVLVATNFYLTRALGDNSTGMVK
Ga0318496_105956392	3300031713	Soil	MTGLTIRMRLILLTAAGLLVLVATNFYLTRALGDN
Ga0307474_104487471	3300031718	Hardwood Forest Soil	MAGLTIRTRLILLTSAGLFVLIATNAYLTHALSENSAGMVKAASLLGGIEQADKAR
Ga0306917_100667321	3300031719	Soil	MAGLTIRTRLILLTSAGLLVLVATNFYLTRALSENSAGMIKAAGLLGGIEQA
Ga0318493_108104061	3300031723	Soil	MARLTIRTRLILLTCAGLFVLIATNAYLTKKLAENSAGMVTAADLLKSIEEANSAQIAFG
Ga0318500_107104671	3300031724	Soil	MTGLTIRTRLILLTSAGLLVLVATNFYLTRALSENSAGMIKAAGLLGGIEQA
Ga0318501_100334361	3300031736	Soil	MARLTIRTRLILLASAALLVLIATNCYLTRTLSENSAGMVKAAGLLKGIEQADGAR
Ga0318501_106904292	3300031736	Soil	MAWLTIRTRLILLTTAGLLVLVATNFYLTRALGENSAGMVRARRPAQ
Ga0307468_1003910831	3300031740	Hardwood Forest Soil	MARLTIRTRLILLTSVGLLVLVATNAYLTRALSENSAGMVEAAGLLA
Ga0306918_101615294	3300031744	Soil	MAGLTIRTRLILLTTAGLLVLIATNAYLTRALGENSAGMVKAAGLLAGIEQADSAQIAFGEV
Ga0318502_105195011	3300031747	Soil	MAGLTIRTRLILLTTAGLLVLIATNAYLTRALGENSAGMVKAAGLLAGIEQADSAQIAFGEVRY
Ga0318494_101000691	3300031751	Soil	MAWLTIRTRLILLTTAGLLVLVATNFYLTRALGENSAGMVRAAGLLRGI
Ga0307477_102342391	3300031753	Hardwood Forest Soil	MARLTIRTRLILLASAALLVLIATNCFLTRTLSENS
Ga0307477_103741861	3300031753	Hardwood Forest Soil	MAGLTIRTRLILLTTAGLLVIVATTAYLTRALSENSAGMVKAAGLLAGIEQAESAQIAFG
Ga0318554_104009601	3300031765	Soil	MARLTIRTRLILLASAALLVLIATNCYLTRTLSENSAGMVKAAGLLKGL
Ga0318543_101305391	3300031777	Soil	MAGLTIRTRLILLTSAGLLVLVATNFYLTRALSEN
Ga0318566_102079183	3300031779	Soil	MARLTIRMRLILLTSAGLLVLITTNSYLTRALSENAAGMVKAAGLLR
Ga0318547_100081431	3300031781	Soil	MARLTIRMRLILLTSAGLLVLITTNSYLTRALSENAAGMVKAAGLLRGIEHADSAQIAF
Ga0318548_106341722	3300031793	Soil	MTGLTIRTRLILLTSAGLLVLVATNFYLTRALSENSAGMIKAAGLLGGIEQADKAWIRFGEVRYW
Ga0318576_100182394	3300031796	Soil	MAGLTIRTRLILLTTAGVLVLIATNAYLTRALSENSAGMVEAAGLLAGIEQA
Ga0318565_102681741	3300031799	Soil	MAWLTIRTRLILLTTAGLLVLVATNFYLTRALGENSAGMVRAAGLLRGIEHADSAQIA
Ga0318568_108624131	3300031819	Soil	MAGLTIRTRLILLTTAGLLVLIATNAYLTRALGENSAGMVKAAGLLAGIEQADSAQIAFGEVRYWMT
Ga0318567_102606013	3300031821	Soil	MARLTIRMRLILLTSAGLLVLITTNSYLTRALSENAAGMVKAAGLLRG
Ga0310917_101377934	3300031833	Soil	MMARLAIRTRLILLTSAGLIVLIATNSYLTHELGANSAGMVTAAELLKSIEEANSAQ
Ga0306919_103086931	3300031879	Soil	MTGLTIRTRLILLTSAGLLVLVATNFYLTRALSENSAGMIKAA
Ga0318544_101036183	3300031880	Soil	MARLTIRTRLILLASAALLVLIATNCYLTRTLSENSAGMVKAAGLLK
Ga0306925_101011834	3300031890	Soil	MAGLTIRMRLILLTAAGLLVLVATNFYLTRALGDNSAGMVKAAGLLAGIEQADSAQIAFG
Ga0306925_105117773	3300031890	Soil	MARLTIRTRLILLASAALLVLIATNCYLTRTLSENSAGMVKAAGL
Ga0318551_102672302	3300031896	Soil	MAGLTIRTQLILLTTAGLLVLVATNFYLTRALGENSAGMVEAAGLLAGIEQAHSAQIA
Ga0318520_100941191	3300031897	Soil	MARLTIRMRLILLTSAGLLVLITTNSYLTRALSENS
Ga0306923_105819293	3300031910	Soil	MAGLTIRTQLILLTTAGLLVLVATNFYLTRALGENSAGMVEAAGLLAGIEQADS
Ga0310912_102588071	3300031941	Soil	MAGLTIRTRLILLTTAGLLVLIATNAYLTRALGENSAGMVKAAGLLAGIEQADSAQIAFGEVRYWM
Ga0310913_109437121	3300031945	Soil	MTGLTIRMRLILLTAAGLLVLVATNFYLTRALGDNSTGMVKAAGLLA
Ga0306926_108612621	3300031954	Soil	MPGLTIRARLILLASVGLLVLVATNAYLTRALSENSAGMVRAAGQHPGIQQAQKPRKAIGAQP
Ga0318530_103210461	3300031959	Soil	MAGLTIRTRLILLTSAGLLVIIATNAYLTHALSENSGAMVEAAGL
Ga0307479_104098311	3300031962	Hardwood Forest Soil	MVRLTIRTRLILMTSVGLLVLIATNAYLTKALRENSAGMVVAAGLLGGIEQADKAQIAFGEERYWMTDL
Ga0318531_102061001	3300031981	Soil	MTRLTIRARLILLTTAGLLVLVATNVYLTRELADDT
Ga0318549_101542243	3300032041	Soil	MAWLTIRTRLILLTTAGLLVLVATNFYLTRALGENSAGMVRAAGLLRGIEHAD
Ga0318533_101085864	3300032059	Soil	MIMAGLTIRTRLILLTTAGVLVLIATNAYLTRALSENSAGMVGAAGLLAGIEQADSAQIAFGEVGHPVTH
Ga0318533_101460361	3300032059	Soil	MAGLTIRTRLILLTTAGLLVIVATNAYLTRALSENSAGMVKAAGLLGVSNRLT
Ga0318533_103834383	3300032059	Soil	MARLTIRTRLILLASAALLVLIATNCYLTRTLSENSAGMVKAAGLLKGI
Ga0318505_103434062	3300032060	Soil	MMARLAIRTRLILLTSAGLIVLIATNSYLTHELGANSAGMVTAAELLKSIEEAN
Ga0318514_100750424	3300032066	Soil	MTGLTIRMRLILLTAAGLLVLVATNFYLTRALGDNST
Ga0318514_107612451	3300032066	Soil	MAGLTIRTRLILLTTAGLLVLIATNAYLTRALSENSAGMVEAAGLLAG
Ga0318577_102341941	3300032091	Soil	MAGLTIRTRLILLTTAGLLVLIATNAYLTRALSENS
Ga0307470_104618221	3300032174	Hardwood Forest Soil	MARLTIRTRLMLLTCAGLFVLIATNAYLTKKLAENSAGMVIAAELLRSIEE
Ga0307471_1007094473	3300032180	Hardwood Forest Soil	MARLTIRTRLILLTSVGLLVLVATNAYLTRVLRENSAGMVEAASLLAGIEQADKAQIA
Ga0307471_1022704391	3300032180	Hardwood Forest Soil	MITRLTIRTRLILLTCAGLFVLIATNAYLTKKLAENSAGMVTAADLLKSIEEANS
Ga0310914_110469491	3300033289	Soil	MARLTIRTRLILLTCAGLFVLIATNAYLTKKLAENSAGMVTAADLLKSIEEANSAQIA
Ga0310914_111013071	3300033289	Soil	MAGLTIRTRLILLTTAGLLVIVATNAYLTRALSENSAGMVKAAGL
Ga0310914_111105181	3300033289	Soil	MARLTIRTRLVLLTCAGLLVLIVTNAYLTKKLAENSAGMVTAAELLKSIE
Ga0310914_116300651	3300033289	Soil	MMSRLTIRTRLILLTSMGLLVLIATNFYLNRKLAENSA
Ga0318519_104913612	3300033290	Soil	MARLTIRTRLILLASAALLVLIATNCYLTRTLSENSAGMVKAAGLLKG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077849

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences