Metagenome / Metatranscriptome Family F077828

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077828
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	75 residues
Representative Sequence	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAG
Number of Associated Samples	107
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.72 %
% of genes near scaffold ends (potentially truncated)	39.32 %
% of genes from short scaffolds (< 2000 bps)	84.62 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.051 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.385 % of family members)
Environment Ontology (ENVO)	Unclassified (37.607 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (64.103 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.42% β-sheet: 0.00% Coil/Unstructured: 34.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF09351	DUF1993	5.98
PF01734	Patatin	1.71
PF00589	Phage_integrase	1.71
PF01925	TauE	0.85
PF13356	Arm-DNA-bind_3	0.85
PF13414	TPR_11	0.85
PF00118	Cpn60_TCP1	0.85
PF14248	DUF4345	0.85
PF00196	GerE	0.85
PF13442	Cytochrome_CBB3	0.85
PF09608	Alph_Pro_TM	0.85
PF00224	PK	0.85
PF06902	Fer4_19	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	1.71
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	1.71
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	1.71
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.85
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.85

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.05 %
Unclassified	root	N/A	17.95 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.05 %
Unclassified	root	N/A	17.95 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.05 %
Unclassified	root	N/A	17.95 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	80.34 %
Unclassified	root	N/A	17.95 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	73.50 %
Unclassified	root	N/A	17.95 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.85 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	35.90 %
Unclassified	root	N/A	17.95 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	11.97 %
Kordiimonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales	4.27 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.85 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	17.95 %
Unclassified	root	N/A	17.95 %
Geminicoccaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae	11.97 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.84 %
Kordiimonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae	4.27 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	2.56 %
Devosiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	0.85 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.95 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	17.09 %
Geminicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	11.97 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.84 %
Kordiimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae → Kordiimonas	4.27 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.56 %
Devosia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia	0.85 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.85 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.95 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	17.09 %
Geminicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	11.97 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.84 %
Kordiimonas lacus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae → Kordiimonas → Kordiimonas lacus	3.42 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.56 %
Devosia psychrophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → Devosia psychrophila	0.85 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.85 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10413262	Not Available	1271	Open in IMG/M
3300000953\|JGI11615J12901_10437978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	842	Open in IMG/M
3300000955\|JGI1027J12803_107537093	Not Available	923	Open in IMG/M
3300002070\|JGI24750J21931_1023209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	880	Open in IMG/M
3300002075\|JGI24738J21930_10018053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1477	Open in IMG/M
3300004463\|Ga0063356_104834716	Not Available	579	Open in IMG/M
3300004801\|Ga0058860_12182645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1161	Open in IMG/M
3300005290\|Ga0065712_10750567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	529	Open in IMG/M
3300005290\|Ga0065712_10750572	Not Available	529	Open in IMG/M
3300005327\|Ga0070658_10218515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	1611	Open in IMG/M
3300005329\|Ga0070683_100302216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1522	Open in IMG/M
3300005330\|Ga0070690_100125327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1728	Open in IMG/M
3300005330\|Ga0070690_100215915	All Organisms → cellular organisms → Bacteria → Proteobacteria	1341	Open in IMG/M
3300005334\|Ga0068869_100706956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	860	Open in IMG/M
3300005338\|Ga0068868_100469350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1097	Open in IMG/M
3300005347\|Ga0070668_100146045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1909	Open in IMG/M
3300005347\|Ga0070668_100775064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	850	Open in IMG/M
3300005366\|Ga0070659_100336805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1263	Open in IMG/M
3300005439\|Ga0070711_101962672	Not Available	515	Open in IMG/M
3300005441\|Ga0070700_100694108	Not Available	808	Open in IMG/M
3300005444\|Ga0070694_100010576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5697	Open in IMG/M
3300005458\|Ga0070681_11880404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	526	Open in IMG/M
3300005546\|Ga0070696_100208353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1462	Open in IMG/M
3300005548\|Ga0070665_100010370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9428	Open in IMG/M
3300005843\|Ga0068860_100026072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5638	Open in IMG/M
3300005843\|Ga0068860_100659467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1054	Open in IMG/M
3300006059\|Ga0075017_100663020	Not Available	801	Open in IMG/M
3300006163\|Ga0070715_10005499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4229	Open in IMG/M
3300006163\|Ga0070715_10750826	Not Available	588	Open in IMG/M
3300006175\|Ga0070712_100420420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1108	Open in IMG/M
3300006358\|Ga0068871_101147035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	728	Open in IMG/M
3300006755\|Ga0079222_10006539	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3961	Open in IMG/M
3300006804\|Ga0079221_10940115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	640	Open in IMG/M
3300006844\|Ga0075428_100370856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1535	Open in IMG/M
3300006852\|Ga0075433_10552145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1013	Open in IMG/M
3300006880\|Ga0075429_101453170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	597	Open in IMG/M
3300006969\|Ga0075419_10419676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	919	Open in IMG/M
3300007076\|Ga0075435_100515989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1034	Open in IMG/M
3300009101\|Ga0105247_11001425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	653	Open in IMG/M
3300009157\|Ga0105092_10921765	Not Available	517	Open in IMG/M
3300009162\|Ga0075423_10557224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	1207	Open in IMG/M
3300010379\|Ga0136449_100989012	Not Available	1356	Open in IMG/M
3300011119\|Ga0105246_12400482	Not Available	517	Open in IMG/M
3300012883\|Ga0157281_1035707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	705	Open in IMG/M
3300012885\|Ga0157287_1036302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	723	Open in IMG/M
3300012897\|Ga0157285_10006016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2238	Open in IMG/M
3300012899\|Ga0157299_10047309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae → Kordiimonas → Kordiimonas lacus	950	Open in IMG/M
3300012901\|Ga0157288_10018963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	1287	Open in IMG/M
3300012903\|Ga0157289_10191241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	661	Open in IMG/M
3300012906\|Ga0157295_10057365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	949	Open in IMG/M
3300012907\|Ga0157283_10089940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	801	Open in IMG/M
3300012911\|Ga0157301_10366138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	548	Open in IMG/M
3300012912\|Ga0157306_10018319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae → Kordiimonas → Kordiimonas lacus	1470	Open in IMG/M
3300012915\|Ga0157302_10089701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	950	Open in IMG/M
3300012916\|Ga0157310_10266324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	656	Open in IMG/M
3300013096\|Ga0157307_1056141	Not Available	749	Open in IMG/M
3300013102\|Ga0157371_10009500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7650	Open in IMG/M
3300013104\|Ga0157370_10263840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1591	Open in IMG/M
3300013104\|Ga0157370_10812283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	851	Open in IMG/M
3300013105\|Ga0157369_11618610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	658	Open in IMG/M
3300013297\|Ga0157378_10005370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11239	Open in IMG/M
3300013308\|Ga0157375_12087646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	674	Open in IMG/M
3300014326\|Ga0157380_10149917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2015	Open in IMG/M
3300014502\|Ga0182021_10706538	All Organisms → cellular organisms → Bacteria → Proteobacteria	1209	Open in IMG/M
3300014502\|Ga0182021_11714155	Not Available	757	Open in IMG/M
3300014745\|Ga0157377_10037205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2681	Open in IMG/M
3300015077\|Ga0173483_10787710	Not Available	547	Open in IMG/M
3300015201\|Ga0173478_10523808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae → Kordiimonas → Kordiimonas lacus	599	Open in IMG/M
3300015373\|Ga0132257_102832704	Not Available	632	Open in IMG/M
3300015374\|Ga0132255_102555042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	780	Open in IMG/M
3300017792\|Ga0163161_10436261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1056	Open in IMG/M
3300018007\|Ga0187805_10519481	Not Available	559	Open in IMG/M
3300019361\|Ga0173482_10020757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1860	Open in IMG/M
3300019361\|Ga0173482_10517047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae → Kordiimonas	583	Open in IMG/M
3300019362\|Ga0173479_10316049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	719	Open in IMG/M
3300020070\|Ga0206356_11214580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	688	Open in IMG/M
3300020080\|Ga0206350_10544062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	788	Open in IMG/M
3300020081\|Ga0206354_10775072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	516	Open in IMG/M
3300023072\|Ga0247799_1028983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	869	Open in IMG/M
3300025321\|Ga0207656_10518963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	605	Open in IMG/M
3300025905\|Ga0207685_10477398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	653	Open in IMG/M
3300025915\|Ga0207693_10469568	Not Available	983	Open in IMG/M
3300025919\|Ga0207657_10921302	Not Available	673	Open in IMG/M
3300025924\|Ga0207694_10468096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	1053	Open in IMG/M
3300025926\|Ga0207659_11304626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	623	Open in IMG/M
3300025928\|Ga0207700_10482787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae → Kordiimonas → Kordiimonas lacus	1095	Open in IMG/M
3300025930\|Ga0207701_10492141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1050	Open in IMG/M
3300025936\|Ga0207670_10135845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1807	Open in IMG/M
3300025937\|Ga0207669_10564424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	920	Open in IMG/M
3300025944\|Ga0207661_10521995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1086	Open in IMG/M
3300025944\|Ga0207661_10549150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	1058	Open in IMG/M
3300025945\|Ga0207679_10036736	All Organisms → cellular organisms → Bacteria → Proteobacteria	3476	Open in IMG/M
3300025972\|Ga0207668_10716220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	880	Open in IMG/M
3300026023\|Ga0207677_10217095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1531	Open in IMG/M
3300026035\|Ga0207703_10271932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1535	Open in IMG/M
3300026041\|Ga0207639_10046927	All Organisms → cellular organisms → Bacteria → Proteobacteria	3261	Open in IMG/M
3300026067\|Ga0207678_10000394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	39864	Open in IMG/M
3300026089\|Ga0207648_10098101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2565	Open in IMG/M
3300026095\|Ga0207676_11674837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	634	Open in IMG/M
3300026116\|Ga0207674_10396229	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300027787\|Ga0209074_10091151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1014	Open in IMG/M
3300027876\|Ga0209974_10149794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	841	Open in IMG/M
3300027902\|Ga0209048_10320774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1080	Open in IMG/M
3300027909\|Ga0209382_10108030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3254	Open in IMG/M
3300028380\|Ga0268265_11149042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	772	Open in IMG/M
3300028381\|Ga0268264_10211623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1780	Open in IMG/M
3300028381\|Ga0268264_10645381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	1047	Open in IMG/M
3300031711\|Ga0265314_10396904	All Organisms → cellular organisms → Bacteria → Proteobacteria	747	Open in IMG/M
3300031834\|Ga0315290_10643413	All Organisms → cellular organisms → Bacteria → Proteobacteria	918	Open in IMG/M
3300031940\|Ga0310901_10198287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	798	Open in IMG/M
3300031943\|Ga0310885_10011744	All Organisms → cellular organisms → Bacteria → Proteobacteria	3040	Open in IMG/M
3300031944\|Ga0310884_10927450	Not Available	538	Open in IMG/M
3300031997\|Ga0315278_11015646	All Organisms → cellular organisms → Bacteria → Proteobacteria	825	Open in IMG/M
3300032160\|Ga0311301_12292101	Not Available	615	Open in IMG/M
3300032516\|Ga0315273_10633740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → Devosia psychrophila	1414	Open in IMG/M
3300033551\|Ga0247830_10092664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2107	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.99%
Host-Associated	Host-Associated	47.01%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	47.01%
Plants	Host-Associated → Plants	46.15%
Aquatic	Environmental → Aquatic	5.98%
Human	Host-Associated → Human	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.01%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	19.66%
Freshwater	Environmental → Aquatic → Freshwater	5.13%
Sediment	Environmental → Aquatic → Sediment	0.85%
Digestive System	Host-Associated → Human → Digestive System	0.85%
Roots	Host-Associated → Plants → Roots	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.06%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.24%
Loam	Environmental → Terrestrial → Soil → Loam	15.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.38%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.42%
Lake	Environmental → Aquatic → Freshwater → Lake	2.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.56%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.85%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.85%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.26%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.42%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.42%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.56%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.71%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.85%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.85%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.85%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.38%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.42%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.42%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	2.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.56%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.56%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.71%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.71%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.71%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.85%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.85%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002070	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4	Host-Associated	Open in IMG/M
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023072	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034129	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_104132621	3300000550	Soil	MQALDPNVVNKKQIKASITNAIAKLVTGSNRDEIARRVEETYERLLXXXXXTAGSVRREVIANLHRRS*
JGI11615J12901_104379783	3300000953	Soil	VSETPMQTIDPVNNKEQIKASITNAIAKLVSGSNRDEIALRVEETYERLLVGATVFAHVPSLTAGFVRRAVI
JGI1027J12803_1075370932	3300000955	Soil	MQTFDPVNVANKKQIKASITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGFVRREVIANLHRRS*
JGI24750J21931_10232094	3300002070	Corn, Switchgrass And Miscanthus Rhizosphere	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRR
JGI24738J21930_100180534	3300002075	Corn Rhizosphere	VKGDPDADRRCSKHKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0063356_1048347161	3300004463	Arabidopsis Thaliana Rhizosphere	MTLDPGNSINKEKIKASITDAIAKQVVGSDRDDIARRVEQEYERLLIGASIVAHVPSLTAGSVRRDVIAGNIHRRS*
Ga0058860_121826453	3300004801	Host-Associated	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGPRR*
Ga0065712_107505672	3300005290	Miscanthus Rhizosphere	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGFVRRA
Ga0065712_107505721	3300005290	Miscanthus Rhizosphere	MQTIDAVNNKKQIKASITSAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0070658_102185153	3300005327	Corn Rhizosphere	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0070683_1003022164	3300005329	Corn Rhizosphere	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0070690_1001253271	3300005330	Switchgrass Rhizosphere	VKGDPYADHRSSKQQKADQSVDHERDRQTVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0070690_1002159154	3300005330	Switchgrass Rhizosphere	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSM
Ga0068869_1007069561	3300005334	Miscanthus Rhizosphere	VKGDPDAAVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0068868_1004693501	3300005338	Miscanthus Rhizosphere	MQTIDPVNNKKQIKASITNAIAKMVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0070668_1001460454	3300005347	Switchgrass Rhizosphere	MQTIDAVNNKKQIKASITSAIAKTGDWLQSRRDCSRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0070668_1007750643	3300005347	Switchgrass Rhizosphere	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTD
Ga0070659_1003368051	3300005366	Corn Rhizosphere	KKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0070711_1019626722	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	TVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGFVRRAIANLHRRS*
Ga0070700_1006941083	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGFVRRAIANLHRRS*
Ga0070694_1000105761	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	KQIKALITSAIANEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0070681_118804042	3300005458	Corn Rhizosphere	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIANLHRDLTNPMSAG
Ga0070696_1002083531	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	KQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0070665_10001037014	3300005548	Switchgrass Rhizosphere	MQTIDAVNNKNQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0068860_10002607211	3300005843	Switchgrass Rhizosphere	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGFVRRAIANLHRRS*
Ga0068860_1006594671	3300005843	Switchgrass Rhizosphere	VTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0075017_1006630202	3300006059	Watersheds	MQTLDPRNLVNKKQIKASITNAIAKQIAGSNREEIVLRVEETYERLLIGAAIFAHVPSLTAGSVRREVVANLPS*
Ga0070715_100054994	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALGLKKHTRAFLNIRLLIGAAVFAHVPSLTAGNG*
Ga0070715_107508261	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MQTLDPNVVNKKQIKASITNAIAKLVTGSNRDEIALRVEETYERLLVGATVFTHVPSLAAGFVRREVIANLHRRSQTGA*
Ga0070712_1004204203	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MQILDPNVVNKKQIKASITNAIAKLVTGSNRDEIALRVEETYERLLVGATVFTHVPSLTAGFVRREVIANLHRRSQTGA*
Ga0068871_1011470351	3300006358	Miscanthus Rhizosphere	TPMQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0079222_100065397	3300006755	Agricultural Soil	MQTIDPVNKKKQIKASITNAISKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIANLHRDLTNPMSAGTPRR*
Ga0079221_109401151	3300006804	Agricultural Soil	MQTIDPVNKKKQIKASITNAISKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVITNLHRDLTNPMSAGTPRR*
Ga0075428_1003708562	3300006844	Populus Rhizosphere	MVKTLDPGNPLNKKQIKASITDAIAKQVGGSNRDEIAQMVEEEYERLLLGAVIPTHIPSLTAGSVRRRVMAKA*
Ga0075433_105521451	3300006852	Populus Rhizosphere	KLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0075429_1014531701	3300006880	Populus Rhizosphere	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVI
Ga0075419_104196763	3300006969	Populus Rhizosphere	MQTIDLVNNKKQIKASITNAVSKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIANLHRDLANPMSAGTPRR*
Ga0075435_1005159893	3300007076	Populus Rhizosphere	MQTIDSVNNKKQIKASITNAVSKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIANLHRDPPNPMSAEP*
Ga0105247_110014253	3300009101	Switchgrass Rhizosphere	MQTIDAVNNKKQIKASITSAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAH
Ga0105092_109217651	3300009157	Freshwater Sediment	MQTFDLVNVVNKKQIKASITNAIAKLVTGSNRDEIALRVEETYERLLIGASVFAHIPSLTAGSVRREVIANLHGTLKC*
Ga0075423_105572244	3300009162	Populus Rhizosphere	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTNPMSAETSSR*
Ga0136449_1009890122	3300010379	Peatlands Soil	VRPIDPGNPVSKQEIKASITNAIARQVVGSNREEIARRVEETYERILRGAAISVHVPSLTEGAVRRDVMATIHRRSSDREP*
Ga0105246_124004822	3300011119	Miscanthus Rhizosphere	MQTIDAVNNKKQIKASITNAISKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0157281_10357073	3300012883	Soil	MQTIDPVNNKKQIKASITNAISKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0157287_10363023	3300012885	Soil	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIANLHRDLTNPMSKGTHADGEDHPEHLSTPSMPFTVPLQV
Ga0157285_100060161	3300012897	Soil	MQTIDPVNNKKQIKVSITNAIAKLVTGSNRDEIALRVEETYERLLIGAAIFAHVPSLTAGSVRREVIAN
Ga0157299_100473091	3300012899	Soil	MQTIDPVNNKKQIKASITNAISKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIANLHRDLTNPMSAGTPRR*
Ga0157288_100189632	3300012901	Soil	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGAAVFVHVPALTAGFVRREVIANLHRRS*
Ga0157289_101912413	3300012903	Soil	MQTIDPVNNKKQIKVSITNAIAKLVTGSNRDEIALRVEETYERLLIGAAIFAHVPSLTAGSVRREVIA
Ga0157295_100573654	3300012906	Soil	MQTIDPVNNKKQIKASITNAISKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIANLHRDLTNPMSAGTPRR*
Ga0157283_100899402	3300012907	Soil	MQTIDPVNNKKQIKASITNAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIANLHRDLTNPMSPGTPRR*
Ga0157301_103661382	3300012911	Soil	MQTIDPVNNKKQIKASITNAIFKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIANLHRDLTNPMSAGTPRR*
Ga0157306_100183191	3300012912	Soil	MQTIDPVNNKKQIKASITNAVSKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0157302_100897013	3300012915	Soil	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLTGAAVFAHVPSLTAGSVRREVIANLHRDLTNPMSAETSSR*
Ga0157310_102663242	3300012916	Soil	MQTIDPVNNKKQIKASITNAIFKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0157307_10561411	3300013096	Soil	MKGDPYAAIDPVNNKKQIKASITNAISKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIANLHRDLTNPMSAGTPRR*
Ga0157371_100095002	3300013102	Corn Rhizosphere	MQTIVSVNNKKQIKASITNAVSKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0157370_102638404	3300013104	Corn Rhizosphere	AKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGPQALT*
Ga0157370_108122831	3300013104	Corn Rhizosphere	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGFVRREVIAEDRR*
Ga0157369_116186103	3300013105	Corn Rhizosphere	MQTIDAVNNKKQIKASITSAIAKLVTGSNRDEIALRVEETYERLLIGAAVFTHVPSLAAGSVRREVIANLHRDLTNPMSAGTVGADGKD
Ga0157378_1000537018	3300013297	Miscanthus Rhizosphere	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIVLRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0157375_120876463	3300013308	Miscanthus Rhizosphere	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRRE
Ga0157380_101499175	3300014326	Switchgrass Rhizosphere	NAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0182021_107065382	3300014502	Fen	MKTLDPADPLNKKQIKASITDAIVKEVAGSNRDEVAQRVEEEYERLLVGAHIFAHIPSLTAGWVRREMVSNGHRGA*
Ga0182021_117141551	3300014502	Fen	VQNLDPGNPVDKKQIKASITDAIFKEVVGSNREEIARRVEEKYESLLDGASIFLHVPSLTAGSVRRDVMAASPAHRS*
Ga0157377_100372053	3300014745	Miscanthus Rhizosphere	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLIAGSVRREVIAHRDLTDSMSAGP*
Ga0173483_107877101	3300015077	Soil	QIKASITNAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVLANLHRRSQTGP*
Ga0173478_105238081	3300015201	Soil	MQTIDPVNNKKQIKASITNAIAKMVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIANLHRRS*
Ga0132257_1028327041	3300015373	Arabidopsis Rhizosphere	KGNPMQTFDPVNNKMQIKASITSAIAKLVTGSNRDEIALRVEETYERLLVGATVFAHVPSLTAGFVRREVIANLHRRSQTGP*
Ga0132255_1025550421	3300015374	Arabidopsis Rhizosphere	IDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP*
Ga0163161_104362613	3300017792	Switchgrass Rhizosphere	MQTIDALNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGFVRRAIANLHRRS
Ga0187805_105194811	3300018007	Freshwater Sediment	VRPIDPGNPVSKQEIKASITNTIARQVVGSNREEIALRVEETYERILRGAAISVHVPSLTAG
Ga0173482_100207575	3300019361	Soil	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0173482_105170471	3300019361	Soil	MQTIDPVNNKKQIKASITNAIAKLVTGSNRDEIALRVEETYERLLIGPAVFAHVPSLTAGSVRREVIANLHRDL
Ga0173479_103160491	3300019362	Soil	MQTIDPVNNKKQIKASITNAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIANLHRDLTNPMSGGSPGR
Ga0206356_112145801	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALGLKKHTRAFLNIRLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0206350_105440621	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MQTIDAVNNKKQIKASITSAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGPRR
Ga0206354_107750722	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MQTIDPVNNKKQIKESITNAIAKLVTGSNRDKIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0247799_10289831	3300023072	Soil	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVR
Ga0207656_105189631	3300025321	Corn Rhizosphere	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0207685_104773981	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALGLKKHTRAFLNIRLLIGAAVFAHVPSLTAGNG
Ga0207693_104695683	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	DPNVVKKKQIKASITNEIAKLVTGSNRDEIALRVEETYERLLVGATVFTHVPSLTAGFVRREVIANLHRRSQTGA
Ga0207657_109213021	3300025919	Corn Rhizosphere	TVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGFVRRAIANLHRRS
Ga0207694_104680964	3300025924	Corn Rhizosphere	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIDGT
Ga0207659_113046262	3300025926	Miscanthus Rhizosphere	PVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0207700_104827874	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIANLQS
Ga0207701_104921413	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIANLQS
Ga0207670_101358451	3300025936	Switchgrass Rhizosphere	MQTIDAVNNKKQIKASITSAIAKLVTGSNRDEIALRVEETYERLLIGAAIFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0207669_105644244	3300025937	Miscanthus Rhizosphere	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGFVRRAIANLHRRS
Ga0207661_105219953	3300025944	Corn Rhizosphere	VTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0207661_105491504	3300025944	Corn Rhizosphere	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIANLQS
Ga0207679_100367367	3300025945	Corn Rhizosphere	MQTVDPVNNKKQIKQSITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0207668_107162201	3300025972	Switchgrass Rhizosphere	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAG
Ga0207677_102170953	3300026023	Miscanthus Rhizosphere	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0207703_102719324	3300026035	Switchgrass Rhizosphere	SITNAISKLVTGSNRDEIALRVEETYERLHIGAAVFAHVPSLTAGSVRREVIANLHRDLTNPMSAGTPRR
Ga0207639_100469277	3300026041	Corn Rhizosphere	DPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0207678_1000039446	3300026067	Corn Rhizosphere	MQTVDAVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0207648_100981013	3300026089	Miscanthus Rhizosphere	MQTIDAVNNKKQIKASITSAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0207676_116748371	3300026095	Switchgrass Rhizosphere	IAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0207674_103962294	3300026116	Corn Rhizosphere	MQTIDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGFVRRAIANLHRRS
Ga0209074_100911513	3300027787	Agricultural Soil	MQTIDPVNKKKQIKASITNAISKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVITNLHRDLTNPMSAGTPRR
Ga0209974_101497941	3300027876	Arabidopsis Thaliana Rhizosphere	MQTFDPVNVVNKKQIKASITNAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIANLHRR
Ga0209048_103207742	3300027902	Freshwater Lake Sediment	VKTLDAGNAVNKKKFKASITAQIANQVVDSNLEDIALRVEETYERLLIGAATSEHVPSLTAGLVKRDVVASMRRQG
Ga0209382_101080306	3300027909	Populus Rhizosphere	MVKTLDPGNPLNKKQIKASITDAIAKQVGGSNRDEIAQMVEEEYERLLLGAVIPTHIPSLTAGSVRRRVMAKA
Ga0268265_111490421	3300028380	Switchgrass Rhizosphere	SITSAIAKLVTGSNRDEIALRVEETYERLLIGAAVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0268264_102116231	3300028381	Switchgrass Rhizosphere	KQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0268264_106453811	3300028381	Switchgrass Rhizosphere	MQTVDPVNNKKQIKESITNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGFVR
Ga0265314_103969042	3300031711	Rhizosphere	QIKASITDAIVKEVAGSNRDEVAQRVEAEYERLLVGAHIFAHIPSLTAGSVRREMVSNGHRGA
Ga0315290_106434132	3300031834	Sediment	LKTLDPGNAQNKKQIKASITDAIAKEVAGSNPVEIARMVEEKYENLLLGALVFTHIPSLTAGSVRRDVIEGNKHRGA
Ga0310901_101982871	3300031940	Soil	MQTIDAVNNKKQIKASISNAIAKLVTGSNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVI
Ga0310885_100117446	3300031943	Soil	MQTIDAVNNKKQIKASISNAIAKLVTGCNRDEIALRVEETYERLLIGATVFAHVPSLTAGSVRREVIAHRDLTDSMSAGP
Ga0310884_109274501	3300031944	Soil	VQTLDPGDPVNKARIKASITAAIAKQVAGSNREEIAQRVEETYERILIGAAVSAHVPALTAGSVRRDLI
Ga0315278_110156461	3300031997	Sediment	PGNAQNKKQIKASITDAIAKEVAGSNPVEIARMVEEKYENLLLGALVFTHIPSLTAGSVRRDVIEGNKHRGA
Ga0311301_122921011	3300032160	Peatlands Soil	MQTLDPRNLVNKKQIKASITNAIAKQIAGSNREEIVLRVEETYERLLIGAAIFAHVPSLTAGSVRREVVANLPS
Ga0315273_106337403	3300032516	Sediment	QNKKQIKASITDAIVKEVAGSNPVEIARMVEEKYEKLLLGALVFTHIPSLTAGSVRRDVIEGNKHRGA
Ga0247830_100926642	3300033551	Soil	VQTLDPGDPVNKARIKASITAAIAKQVAGSNREEIAQRVEETYERILIGAAVSAHVPALTAGSVRRDLIASMHRRSLDRDP
Ga0370493_0016344_328_561	3300034129	Untreated Peat Soil	VNALDPANAANKHQIKASITDAIAKEVIGSNRDDVAQRVEMEYERLLVGAAIFTLIPSLTAGSVRRAVMAGHSRRAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077828

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences