Metagenome / Metatranscriptome Family F077817

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F077817
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	63 residues
Representative Sequence	MSSDPKLDVALKILKLAGHQIGDAHIPPPPDGHAMVIWIDGVPCTVEGVLKMVEEEIRESEQPG
Number of Associated Samples	63
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	77.59 %
% of genes near scaffold ends (potentially truncated)	19.66 %
% of genes from short scaffolds (< 2000 bps)	85.47 %
Associated GOLD sequencing projects	54
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (63.248 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.513 % of family members)
Environment Ontology (ENVO)	Unclassified (31.624 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (37.607 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.43% β-sheet: 9.78% Coil/Unstructured: 59.78%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.64
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.64
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF05552	TM_helix	2.56
PF00072	Response_reg	1.71
PF00589	Phage_integrase	1.71
PF13193	AMP-binding_C	1.71
PF08808	RES	0.85
PF16657	Malt_amylase_C	0.85
PF01458	SUFBD	0.85
PF11896	GlgE_dom_N_S	0.85
PF13358	DDE_3	0.85
PF09286	Pro-kuma_activ	0.85
PF00916	Sulfate_transp	0.85
PF13005	zf-IS66	0.85
PF01850	PIN	0.85
PF04389	Peptidase_M28	0.85
PF01740	STAS	0.85
PF04342	DMT_6	0.85
PF07238	PilZ	0.85
PF01451	LMWPc	0.85
PF12055	DUF3536	0.85
PF00149	Metallophos	0.85
PF04607	RelA_SpoT	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	2.56
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	2.56
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.85
COG0719	Fe-S cluster assembly scaffold protein SufB	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.85
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.85
COG3169	Uncharacterized membrane protein, DMT/DUF486 family	Function unknown [S]	0.85
COG4934	Serine protease, subtilase family	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG5654	Predicted toxin component of a toxin-antitoxin system, contains RES domain	Defense mechanisms [V]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.25 %
All Organisms	root	All Organisms	36.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.25 %
cellular organisms	root	All Organisms → cellular organisms	36.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.25 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.25 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	19.66 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.71 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.71 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.25 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.97 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.56 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.71 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.97 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.71 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.71 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.85 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.97 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.71 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.71 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.85 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.97 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.71 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.71 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.85 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.97 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.71 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.71 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.85 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.85 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.97 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.71 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.71 %
Bradyrhizobium sp. STM 3809	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	0.85 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.85 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559006\|FI_contig30668	Not Available	517	Open in IMG/M
2189573004\|GZGWRS401CXZL6	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300002914\|JGI25617J43924_10120279	Not Available	926	Open in IMG/M
3300004479\|Ga0062595_100599465	Not Available	858	Open in IMG/M
3300004479\|Ga0062595_100658159	Not Available	831	Open in IMG/M
3300005434\|Ga0070709_10109936	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1851	Open in IMG/M
3300005434\|Ga0070709_10292820	Not Available	1187	Open in IMG/M
3300005434\|Ga0070709_11433954	Not Available	559	Open in IMG/M
3300005436\|Ga0070713_100623072	Not Available	1026	Open in IMG/M
3300005436\|Ga0070713_101043525	Not Available	789	Open in IMG/M
3300005436\|Ga0070713_101292947	Not Available	707	Open in IMG/M
3300005437\|Ga0070710_10265787	Not Available	1108	Open in IMG/M
3300005437\|Ga0070710_10307742	Not Available	1036	Open in IMG/M
3300005437\|Ga0070710_10753428	Not Available	692	Open in IMG/M
3300005439\|Ga0070711_100004449	All Organisms → cellular organisms → Bacteria	8271	Open in IMG/M
3300005439\|Ga0070711_100044512	All Organisms → cellular organisms → Bacteria → Acidobacteria	3013	Open in IMG/M
3300005439\|Ga0070711_101227849	Not Available	649	Open in IMG/M
3300005439\|Ga0070711_101335936	Not Available	623	Open in IMG/M
3300005467\|Ga0070706_101379706	Not Available	645	Open in IMG/M
3300005610\|Ga0070763_10343622	Not Available	829	Open in IMG/M
3300005764\|Ga0066903_100132026	All Organisms → cellular organisms → Bacteria	3516	Open in IMG/M
3300005764\|Ga0066903_101120346	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1453	Open in IMG/M
3300006059\|Ga0075017_100224978	All Organisms → cellular organisms → Bacteria	1365	Open in IMG/M
3300006163\|Ga0070715_10967921	Not Available	528	Open in IMG/M
3300006172\|Ga0075018_10811891	Not Available	514	Open in IMG/M
3300006175\|Ga0070712_100345464	Not Available	1216	Open in IMG/M
3300006175\|Ga0070712_101242314	Not Available	648	Open in IMG/M
3300006854\|Ga0075425_102058246	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	638	Open in IMG/M
3300006854\|Ga0075425_102564663	Not Available	564	Open in IMG/M
3300007076\|Ga0075435_100631248	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300010154\|Ga0127503_10298586	Not Available	542	Open in IMG/M
3300011120\|Ga0150983_13472121	Not Available	597	Open in IMG/M
3300012971\|Ga0126369_13429570	Not Available	519	Open in IMG/M
3300012984\|Ga0164309_10902490	Not Available	720	Open in IMG/M
3300018006\|Ga0187804_10049791	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1637	Open in IMG/M
3300020579\|Ga0210407_10674754	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300020580\|Ga0210403_10159820	Not Available	1844	Open in IMG/M
3300020580\|Ga0210403_10462140	Not Available	1033	Open in IMG/M
3300020581\|Ga0210399_10122394	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2139	Open in IMG/M
3300020581\|Ga0210399_10283594	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300020581\|Ga0210399_11019332	Not Available	666	Open in IMG/M
3300020583\|Ga0210401_10059932	All Organisms → cellular organisms → Bacteria	3585	Open in IMG/M
3300020583\|Ga0210401_10230941	Not Available	1709	Open in IMG/M
3300021168\|Ga0210406_10085133	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2700	Open in IMG/M
3300021168\|Ga0210406_10324289	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300021168\|Ga0210406_11279398	Not Available	529	Open in IMG/M
3300021171\|Ga0210405_10025537	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4755	Open in IMG/M
3300021171\|Ga0210405_10032692	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4161	Open in IMG/M
3300021171\|Ga0210405_10181875	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1666	Open in IMG/M
3300021401\|Ga0210393_10020707	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5113	Open in IMG/M
3300021404\|Ga0210389_10251314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1383	Open in IMG/M
3300021404\|Ga0210389_10400444	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300021404\|Ga0210389_10804913	Not Available	734	Open in IMG/M
3300021405\|Ga0210387_10703738	All Organisms → cellular organisms → Bacteria → Acidobacteria	895	Open in IMG/M
3300021474\|Ga0210390_10015860	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6115	Open in IMG/M
3300021475\|Ga0210392_10000758	All Organisms → cellular organisms → Bacteria	18198	Open in IMG/M
3300021477\|Ga0210398_10944287	Not Available	690	Open in IMG/M
3300021560\|Ga0126371_12641897	Not Available	608	Open in IMG/M
3300025898\|Ga0207692_10439593	Not Available	819	Open in IMG/M
3300025905\|Ga0207685_10217750	Not Available	906	Open in IMG/M
3300025906\|Ga0207699_10486754	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	889	Open in IMG/M
3300025928\|Ga0207700_10905484	Not Available	789	Open in IMG/M
3300025939\|Ga0207665_10276004	Not Available	1249	Open in IMG/M
3300026551\|Ga0209648_10012964	All Organisms → cellular organisms → Bacteria	7269	Open in IMG/M
3300026551\|Ga0209648_10097434	Not Available	2417	Open in IMG/M
3300026551\|Ga0209648_10104036	All Organisms → cellular organisms → Bacteria → Acidobacteria	2321	Open in IMG/M
3300026551\|Ga0209648_10358454	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300027105\|Ga0207944_1010768	Not Available	807	Open in IMG/M
3300027460\|Ga0207506_1017309	Not Available	559	Open in IMG/M
3300027898\|Ga0209067_10079897	All Organisms → cellular organisms → Bacteria	1683	Open in IMG/M
3300030847\|Ga0075405_12036892	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1042	Open in IMG/M
3300030916\|Ga0075386_11907565	Not Available	643	Open in IMG/M
3300031057\|Ga0170834_105702819	Not Available	610	Open in IMG/M
3300031057\|Ga0170834_107080658	Not Available	751	Open in IMG/M
3300031057\|Ga0170834_107295519	Not Available	1349	Open in IMG/M
3300031057\|Ga0170834_111475250	Not Available	531	Open in IMG/M
3300031057\|Ga0170834_112292650	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2405	Open in IMG/M
3300031090\|Ga0265760_10037021	Not Available	1448	Open in IMG/M
3300031128\|Ga0170823_10347198	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300031170\|Ga0307498_10332733	Not Available	578	Open in IMG/M
3300031170\|Ga0307498_10397505	Not Available	541	Open in IMG/M
3300031231\|Ga0170824_102528122	All Organisms → cellular organisms → Bacteria → Acidobacteria	846	Open in IMG/M
3300031231\|Ga0170824_103087310	Not Available	526	Open in IMG/M
3300031231\|Ga0170824_104339826	Not Available	631	Open in IMG/M
3300031231\|Ga0170824_105454453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	1610	Open in IMG/M
3300031231\|Ga0170824_105496193	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1034	Open in IMG/M
3300031231\|Ga0170824_111449883	Not Available	584	Open in IMG/M
3300031231\|Ga0170824_112417830	Not Available	749	Open in IMG/M
3300031231\|Ga0170824_117700494	Not Available	675	Open in IMG/M
3300031231\|Ga0170824_118695605	Not Available	1119	Open in IMG/M
3300031231\|Ga0170824_126558272	Not Available	602	Open in IMG/M
3300031446\|Ga0170820_12443671	Not Available	714	Open in IMG/M
3300031446\|Ga0170820_12844950	Not Available	745	Open in IMG/M
3300031446\|Ga0170820_15018823	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1238	Open in IMG/M
3300031474\|Ga0170818_103437249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	891	Open in IMG/M
3300031474\|Ga0170818_108393592	All Organisms → cellular organisms → Bacteria → Proteobacteria	1909	Open in IMG/M
3300031474\|Ga0170818_109026496	Not Available	842	Open in IMG/M
3300031474\|Ga0170818_114404457	Not Available	1211	Open in IMG/M
3300031708\|Ga0310686_119355421	Not Available	536	Open in IMG/M
3300031720\|Ga0307469_10253976	Not Available	1417	Open in IMG/M
3300031720\|Ga0307469_11590259	Not Available	628	Open in IMG/M
3300031753\|Ga0307477_10858935	Not Available	601	Open in IMG/M
3300031820\|Ga0307473_10800399	Not Available	672	Open in IMG/M
3300031820\|Ga0307473_11330295	Not Available	539	Open in IMG/M
3300031962\|Ga0307479_12002918	Not Available	528	Open in IMG/M
3300032076\|Ga0306924_12372948	Not Available	536	Open in IMG/M
3300032174\|Ga0307470_10502649	All Organisms → cellular organisms → Bacteria → Acidobacteria	885	Open in IMG/M
3300032180\|Ga0307471_100281475	Not Available	1738	Open in IMG/M
3300032180\|Ga0307471_100651821	Not Available	1215	Open in IMG/M
3300032205\|Ga0307472_100085899	All Organisms → cellular organisms → Bacteria	2111	Open in IMG/M
3300032205\|Ga0307472_100585715	All Organisms → cellular organisms → Bacteria → Acidobacteria	981	Open in IMG/M
3300032205\|Ga0307472_100920289	Not Available	811	Open in IMG/M
3300032205\|Ga0307472_101262218	Not Available	709	Open in IMG/M
3300032205\|Ga0307472_101509888	Not Available	656	Open in IMG/M
3300032205\|Ga0307472_102185322	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300032205\|Ga0307472_102703512	Not Available	507	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.44%
Host-Associated	Host-Associated	2.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.16%
Aquatic	Environmental → Aquatic	4.27%
Plants	Host-Associated → Plants	2.56%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.16%
Sediment	Environmental → Aquatic → Sediment	2.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.56%
Freshwater	Environmental → Aquatic → Freshwater	1.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.23%
Loam	Environmental → Terrestrial → Soil → Loam	23.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.56%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	54.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	19.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.13%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.56%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.56%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.51%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	19.66%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	19.66%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	13.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.27%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.56%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.71%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.85%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.85%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.85%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559006	Grass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembled	Environmental	Open in IMG/M
2189573004	Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027105	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018 (SPAdes)	Environmental	Open in IMG/M
3300027460	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-C (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300030847	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FI_00335920	2166559006	Grass Soil	MTSDLNLGVALKILKAAGHQIGDAHIPPAPHGDAMRIWIDGVPCTLRGVLKMAEEEIEAKDDEKPEQPG
FG2_05809820	2189573004	Grass Soil	MSSNPRLDAALVVLRDAGHQIGHVHIPPPAQPLAMRIWIDRISCTFEGVLKMAEEEIKESEQPGLDLPRDQGKFGWCQR
JGI25617J43924_101202791	3300002914	Grasslands Soil	MSSNPRLDAALTILRDADHQIGDAHIPPIQEGNAMRIWIDGVPCTFEGVFKMAAEEIKESEQPG*
Ga0062595_1005994651	3300004479	Soil	VALKLLKVAGHQIGDAHIPLPPRGEETRIWIDGVPRTFEDVCKMAVEELRESAQPG*
Ga0062595_1006581592	3300004479	Soil	MSSDLKLDVALKLLKVAGHQIGDAHIPPPPRGEVMRIWIDGVPCTFEDVFKMAAEELRESAQAG*
Ga0070709_101099363	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSSDPNLDVALKILRNAGHQIGDVHIPPPQQGDAMRIWIDGVSCTFGDVLKMAKEEIEESEQPGG*
Ga0070709_102928203	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSSDPRLDSALMILRDAGHQIGEAYIPPPQDGNGMRIWIDGVPCMLEDVLKMAEEERKEFEKRG*
Ga0070709_114339541	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTSDLNLDMALKILKAAGHQIGDAHIPPAAHGDAMRIWIDGVPCTLRGILRMAEVVIEAKGDEKPEQPR*
Ga0070713_1006230721	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTSDLNLDMALKILKAAGHQIGDAHIPPAAHGDAMRIWIDGVPCTLRGVLRMAEEVIEAKDEEKPEQPP*
Ga0070713_1010435251	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VALKLLKVAGHQIGDAHIPLPPRGEGTRIWIDGVPRTFEDVCKMAVEELRESAQPG*
Ga0070713_1012929472	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSSNLKLDVALKLLKVAGHQIGDAHIPPPPCPEGMRIWIDGVPCTFEGVFKMAVE
Ga0070710_102657872	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VSSDPKLDVALKILKLAGHQIGDTRIPPALHGDAMRVWIDGVPCTLEDVFKMAEEEIEESERG*
Ga0070710_103077421	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VALKLLKVAGHQIGDAHIPLPPCGEGTRIWIDGVPRTFEDVFKMAVEELRESAQPG*
Ga0070710_107534282	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTSDLNLDAALKILKAAGHQIGDAHIPPATHGDAMRIWIDGFPCTLRGVSKMAEEEIEAKDEEKPEQPG*
Ga0070711_1000044492	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MEMVDLNLDVALKILKAAGHQIGDAYIPPAPHGDAMRIWIDGVPCTLRGILRMAEVVIEAKGDEKPEQPR*
Ga0070711_1000445123	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MGSNLKLDVALKLLKVAGHQIGDAHIPPPPCPEGMRIWIDGVPCTFEGVFKMAVEELRESAQPG*
Ga0070711_1012278491	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	KILKLAGHQIGDTCIPPALHGDAMRVWIDGVPCTLEDVFKMAEEEIEESERG*
Ga0070711_1013359361	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSSDPSLDIALKILRNAGHQIGDAHIPPPQVGDAMRIWIDGVSCTLGDVLKMALLEFDGKIAKEEIEEFEQPG*
Ga0070706_1013797062	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	PSLDIALKILRNAGHQIGDAHIPPPQVGDAMRIWIDGVSCTFGDVLKMAKEEIEESEQPGG*
Ga0070763_103436221	3300005610	Soil	LSSDPKLDVALKILKLAGHQIGDAHIPPPLHGGDAMRVWIDGVPCTFEDVFKMAEEEIEESERG*
Ga0066903_1001320264	3300005764	Tropical Forest Soil	MTSDLNLDVALKILKAAGHQIGDAHIPPAPHGDAMRIWIDGVPCTLRSVLRMAEEEIQGEEEPESSG*
Ga0066903_1011203464	3300005764	Tropical Forest Soil	MSPDPNLDTALKILRNAGHQIGEAHIPPPQAGDAMRIWIDGVSCTLGDVLRMAKEEIEESEQPG*
Ga0075017_1002249782	3300006059	Watersheds	MSSDPKLDVALKILKLAGHQIGDAHIPPPPDGHAMVIWIDGVPCTVEGVLKMVEEEIRESEQPG*
Ga0070715_109679212	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VSSDPKLDVALKILKLAGHQIGDTCIPPALHGDAMRVWIDGVPCTLEDVFKMAEEEIEESERG*
Ga0075018_108118912	3300006172	Watersheds	MSSDPKLDVALKILKLAGHQIGDTRIPPPLHGDAMRVWIDGVPCTLEDVFKMAEEEIEESERG*
Ga0070716_1015900491	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MTSDLNLDMALKILKAAGHQIGDAHIPPAAHGDAMRIWIDGVPCTLRGVLRMA
Ga0070712_1003454643	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSSDPRLDSALMILRDAGHQIGEAYIPPPQDGNVMRIWIDGVPCMLEDVLKMAEEERKEFEKRG*
Ga0070712_1012423141	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LTEKWKEIRLMEMVDLNLDVALKILKAAGHQIGDAYIPPAPHGDAMRIWIDGVPCTLRGILRMAEVVIEAKGDEKPEQPR*
Ga0075425_1020582462	3300006854	Populus Rhizosphere	MSSDPRLDAALMILRDAGHQIGEAYIPPPQDGDGMRIWIDGVPCMLEDVLKMAEEERK
Ga0075425_1025646632	3300006854	Populus Rhizosphere	MTSDLNLDAALKILRDAGHQIGDAHIPPAPHGDAMRIWIDGVPCTLRGVLKMAEEEIEAKDEEKPEQPG*
Ga0075435_1006312481	3300007076	Populus Rhizosphere	MSSDPRLDAALMILRDAGHQIGEAYIPPPQDGDGMRIWIDGVPCMLEDVLKMAEEERKEFEKRG*
Ga0127503_102985862	3300010154	Soil	VALKLLKVAGHQIGDAHIPLPPRGEGMRIWIDGVPRTFEDVFKMAVEELRESAQPG*
Ga0150983_134721211	3300011120	Forest Soil	MSSDPKLDVALKILKLAGHQIGDAHIPPPLHGADAMRVWIDGVPCTLEDVFKMAEEEIEESERG*
Ga0126369_134295702	3300012971	Tropical Forest Soil	VALKILKAAGHQIGDAHIPPAPHGDAMRIWIDGVPCTLRSVLRMAEEEIQGEEEPESSG*
Ga0164309_109024902	3300012984	Soil	MGSNLKLDVALKLLKVAGHQIGDAHIPLPPRGEGTRIWIDGVPRTFEDVFKMAVEELRESAQPG*
Ga0187804_100497914	3300018006	Freshwater Sediment	MSSDPKLDEALKILKLAGHQIGDVHIPPQDGDAMRIWIDGVPCAFEDVLKMAEEERKESEQRG
Ga0210407_106747543	3300020579	Soil	SDPKINVALKILKVAGHQIGDEHIPRTRHGEATGIWIDGVPCTFEAVFKMAEEELRESQQPG
Ga0210403_101598202	3300020580	Soil	MGSNLKLDVALKLLKVAGHKIGDAPAPSPPHGEGMRIWIDGVPCTFEDVFKMAVEELRESAQPG
Ga0210403_104621402	3300020580	Soil	MGSDPKINVALKILKVAGHQIGDEHIPRTRHGEATGIWIDGVPCTFEAVFKMAEEELRESQQPG
Ga0210399_101223943	3300020581	Soil	MSSDPKLDVALKILKLAGHQIGDARIPPSLHGDAMRVWIDGVPRTFEDVFKMAEEEIEESERG
Ga0210399_102835942	3300020581	Soil	MSSDPKLSVTLKILKLAGHQIGDAHVPPSQGGHTMRVWIDGVSCALEDALKMVEAEIKKSEQPG
Ga0210399_110193321	3300020581	Soil	VTLKLLKVAGHQIGDAHIPLPPRGEGMRIWIDGVPRTFEDVFKMAVEELRESAQPG
Ga0210401_100599323	3300020583	Soil	MGSNLKLDVALKLLKVAGHQIGDAHIPPPPCPEGMRIWIDGVPCTFEGVFKMAVEELRESAQPG
Ga0210401_102309411	3300020583	Soil	MTSDLNLDMALKILKAAGHQIGDAHIPPAAHGDAMRIWIDGVPCTLRGVLRMAEEVIEAKDEEKPERRVSTTLRQV
Ga0210406_100851331	3300021168	Soil	MSSDPSLDIALKILRNAGYQIGDAHIPPPQVGDAMRIWIDGVSCTLGDVLKMAKEEIEESEQPG
Ga0210406_103242892	3300021168	Soil	MGSDLKINVALKILKVAGHQIGDEHFPPTRHGEATGIWIDGVPCTLEAVFKMADEELRESQQPG
Ga0210406_112793981	3300021168	Soil	VSSDPKLDVALKILKLAGHQIGDTRIPQPLHGDAMRVWIDGVPCTLEDVFKM
Ga0210405_100255378	3300021171	Soil	WQVNMSSYPKLNVSLKILKLAGHQIGDAHIPPSRDGHTMRVWIDGVPCTLEDVLKMLEEEIKESEQPG
Ga0210405_100326923	3300021171	Soil	MSSNPRLDAALTILRDADHQIGDAHIPPIQEGNAMRIWIDGVPCTLEGVFKMAAEEIKESEQPG
Ga0210405_101818753	3300021171	Soil	MSSDPKLDVALKILKLAGHQIGDAHIPPPLHGADAMRVWIDGVPCTFEDVFKMAEEEIEESERG
Ga0210393_100207072	3300021401	Soil	VSSDPKLDVALKILKLAGHQIGDTRIPPPLHGDAMRVWIDGVPCTLEDVFKMAEEEIEESERG
Ga0210389_102513141	3300021404	Soil	MSSDPRLDSALMILRDAGHQIGEAYIPPPQDGNVMRIWIDGVPCMLEDVLKMAE
Ga0210389_104004441	3300021404	Soil	MGSNLKLDVALKLLKVAGHQIGDAHIPPPPCPEGMRIWIDGVPCTFEGVFKMA
Ga0210389_108049131	3300021404	Soil	LLKVAGHQIGDAHIPPPPCPEGMRIWIDGVPCTFEGVFKMAVEELRESAQPG
Ga0210387_107037381	3300021405	Soil	MSSEPKLNVSLKILRLAGHQIGDAHIPPSQDGHTMRVWIDGVSCTLEDVLKMVEEEACHGCGSSW
Ga0210390_100158605	3300021474	Soil	MSSNPRLDVALKILRNAGHDIGDALIAPPPAGDSMGIWIDGVAFTFEDVFRMAEEELKEFEQCG
Ga0210392_100007583	3300021475	Soil	VSSDPKLDVALKILKLAGHQIGDTRIPPLLHGDALRVWIDGVPCTLEDVFKMAEEEIEESERG
Ga0210398_109442871	3300021477	Soil	MSSNPRLDVALKILRNAGHDIGDALIAPPQAGDSMRIWIDGAAFTFEDVFRMAEEELKEFEQCG
Ga0126371_126418972	3300021560	Tropical Forest Soil	MTSDLNLDVALKILKAAGHQIGDAHIPPAPHGDAMRIWIDGVPCTLRSVLRMAEEEIQGEEEPESSG
Ga0207692_104395931	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VALKLLKVAGHQIGDAHIPLPPCGEGTRIWIDGVPRTFEDVFKMAVEELRESAQPG
Ga0207685_102177503	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSSDPSLDIALKILRNAGHQIGDAHIPPPQVGDAMRIWIDGVSCTLGDVLKMALLEFDGKIAKEEIEEFEQPG
Ga0207699_104867541	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MTSDLNLDMALKILKAAGHQIGDAHIPPAAHGDAMRIWIDGVSCTFGDVLKMAKEEIEESEQPGG
Ga0207700_109054841	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VALKLLKVAGHQIGDAHIPLPPRGEETRIWIDGVPRTFEDVCKMAVEELRESAQPG
Ga0207665_102760042	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	ERQVKMGSNLKLDVALKLLKVAGHQIGDAHIPPPPCPEGMRIWIDGVPCTFEGVFKMAVEELRESAQPG
Ga0209648_100129642	3300026551	Grasslands Soil	MSSNPRLDAALTILRDAGHQIGDAHIPPQDGDAMRILIDGVPCAFEDVLNMAEEERKESEQSR
Ga0209648_100974342	3300026551	Grasslands Soil	MSSNPRLDAALTILRDADHQIGDAHIPPIQEGNAMRIWIDGVPCTFEGVFKMAAEEIKESEQPG
Ga0209648_101040361	3300026551	Grasslands Soil	MSSDPKLDVALKILKLAGHQIGDAHIPPPLHGADAMRVWIDGVPCTFEDVFKMAEEEIQESERG
Ga0209648_103584541	3300026551	Grasslands Soil	MSSNPRLDAALTILRDAGHQIGDAHIPSARYGDAMRIWIDGVPCTFEDVFKMAAEEIKESEQPG
Ga0207944_10107683	3300027105	Forest Soil	MGSDPKINVALKILIVAGHQIGDEHIPRTRHGEATGIWIDGVPCTFEAVFKMAEEELRESQQPG
Ga0207506_10173091	3300027460	Soil	MSSDLKLDVALKLLKVAGHQIGDAHIPPPPRGEVMRIWIDGVPRTFEDVCKMAVEELRESAQPG
Ga0209067_100798972	3300027898	Watersheds	MSSDPKLDVALKILKLAGHQIGDAHIPPPPDGHAMVIWIDGVPCTVEGVLKMVEEEIRESEQPG
Ga0075405_120368921	3300030847	Soil	MSSDPRLDAALTILRDAGHQIGDTHIPLQDGDAMRIWIDGVPCAFEDVLKMAEEERKESEQHGCGQSAII
Ga0075386_119075651	3300030916	Soil	VALKILKLAGHQIGDTRIPPPLHGDAMRVWIDGVPCTLEDVFKMAEEEIEESERG
Ga0170834_1057028191	3300031057	Forest Soil	MSSDPNLDVALKILRNAGHQIGNAHIPPPQEGDAMRIWIDGVSCTLGDVLKMAKEEIEECEQPG
Ga0170834_1070806581	3300031057	Forest Soil	MSSDPKLDVAPKILKLAGHQIGDAHNPPPLHEGDAMRVWIDGVPCTFDDVFKMAEEEIEESERG
Ga0170834_1072955194	3300031057	Forest Soil	MSSDPKLSVTLKILKLAGHQIGDAHVPPSQDGHTMRVWIDGVSCTLEDALKMVEAEIKKSEQPG
Ga0170834_1114752502	3300031057	Forest Soil	MSADLKLDVALKLLKVAGHQIGDAHIPPPPRREGMRIWIDGVPCTFVGVLKMADEELKESAKRG
Ga0170834_1122926505	3300031057	Forest Soil	VSSDPKLDVALKILKLAGHQIGDTRIPPLLHGDAMRVWIDGVPCTLEDVFKMAEEEIEESERG
Ga0265760_100370211	3300031090	Soil	MSSEPKLDVALKILKLAGHQIGDAHIPPSRDGHTMRVWIDGVPCTLEDVLKMVEEEIKESKQR
Ga0170823_103471982	3300031128	Forest Soil	MSSAPKLNVALKILKLAGHQIGDAHIPPSQDGHTMRVWIDGVSCTLEDVLKMVEEEIKRI
Ga0307498_103327331	3300031170	Soil	MSSDPRLDAALMILRDAGHQIGEAYIPPPQDGDGMRIWIDGVPCMLEDVLKMAEEERKEFEKRG
Ga0307498_103975052	3300031170	Soil	MTSDLNLDAALKILKAAGHQVGDAHIPPAPHGDAMRIWIDGVPCTLRGVLRMAEEVIEAKDEEKPEQPP
Ga0170824_1025281222	3300031231	Forest Soil	MSSDPRLDATLMILRDAGHQIGEAYIPPPQDGEGMRIWIDGVPCMLEDVLKMAEEERKEFEKRS
Ga0170824_1030873102	3300031231	Forest Soil	SDLKLDVALKLLKVAGHQIGDAHIPPPPREEGMRIWIDGVPCTFEDVFKMAVEELRESAQAG
Ga0170824_1043398261	3300031231	Forest Soil	NMSSAPKLNVALKILTLAGHQIGDAHIPPSQDGHTMRVWIDGVSCTLEDVLKMVEEEIKESEQRN
Ga0170824_1054544532	3300031231	Forest Soil	MTSDLNLGVALKILKAAGHQIGDAHIPPAPHGDAMRIWIDGVPCTLRGVLKMAEEEIEAKDEEKPEQPG
Ga0170824_1054961931	3300031231	Forest Soil	MSSDPKLSVTLNILKLAGHQIGDAHIPPSQGGHTMRVWIDGVPCTLEDVLKMVEEEIQKSEQPG
Ga0170824_1114498832	3300031231	Forest Soil	MSSDLKLDVALKLLKVAGHQIGDAHIPPPPRGEGMRIWIDGVPCTSEGVFKMAVEELRKSAQPG
Ga0170824_1124178302	3300031231	Forest Soil	MSSEPKLNVALKILKLAGHQIGDAHIPPSQDGHTMRVWIDGVSCTLEDVLKMVEEEIKRI
Ga0170824_1177004942	3300031231	Forest Soil	MSSDPKLSVTLKILKLAGHEIGDAHIPRSQDGHTMRVWIDGVSCALEDVLKMVEEEIKESKQPG
Ga0170824_1186956053	3300031231	Forest Soil	MGSDLKINVALKILKVAGHQIGDEHFPPTRHGEATGIWIDGVPCTFEAVFKMADEELKESQQPG
Ga0170824_1265582722	3300031231	Forest Soil	VSSEPKLNVARKILKRAGHQIGDAHIPPPQDGDTMRVWIDGVPCTLEDVLKMVEEEIKESEQRN
Ga0170820_124436711	3300031446	Forest Soil	VALKILKAAGHQIGDAHIPPAPHGDAMRIWIDGVPCTLRGVLKMAEEEIEAKDEEKPEQP
Ga0170820_128449501	3300031446	Forest Soil	MSSNPRFDAALVVLRDAGHQIGHVNIPPPAQPLAMRIWIDRISCTFEGVLKMAEEEIKESEQPGLGLP
Ga0170820_150188231	3300031446	Forest Soil	MSSDPKLSVTLKILKLAGHQIGDAHIPRSQDGHTMRVWIDGVSCALEDVLKMVEEEIKESKQPG
Ga0170818_1034372492	3300031474	Forest Soil	MSSNPRFDAALVVLRDAGHQIGHVHIPPPAQPLAMRIWIDRISCTFEGVLKMAEEEIKESEQPGLGLP
Ga0170818_1083935926	3300031474	Forest Soil	NLGVALKILKAAGHQIGDAHIPPAPHGDAMRIWIDGVPCTLRGVLKMAEEEIEAKDEEKPEQPG
Ga0170818_1090264963	3300031474	Forest Soil	MSSDLKLDVALKLLKVAGHQIGDAHIPPPPRGEGMRIWIDGVPCTFEDVFKMAVEELRESAQAG
Ga0170818_1144044572	3300031474	Forest Soil	VSSEPKLNVARKILKRAGHQIGDAHIPPPQDGDTMRVWIDGVLCTLEDVLKMVEEEIKESEQRN
Ga0310686_1193554211	3300031708	Soil	MSSAPKLNMALKILTLTGHQIGDAHIPPSRDGHTMRVWIDGVSCTLEDVLKMLEEEIKESEQPG
Ga0307469_102539763	3300031720	Hardwood Forest Soil	LSSDPKLDVALKILKLAGHQIGDTRIPPPLHGDAMRVWIDGVPCTLEDVFKMAEEEIEESERG
Ga0307469_115902592	3300031720	Hardwood Forest Soil	MSSDPRLDSALMILRDAGHQIGEAYIPPPQDGEGMRIWIDGVPCMLEDVLKMAEEERKEFEKRG
Ga0307477_108589351	3300031753	Hardwood Forest Soil	MSSDPKLDVALKILKLAGHQIGDAHNPPPPHEGDAMRVWIDGVPCTFEDVFKMAEEEIEESERG
Ga0307473_108003992	3300031820	Hardwood Forest Soil	MSSDLKLDVALKLLKVAGHQIGDAHIPPPPRGEGMRIWIDGVPCTFEDVFKMAAEELRESAQAG
Ga0307473_113302952	3300031820	Hardwood Forest Soil	MSSDPRLDAALMILRDAGHQIGEAYIPPPQDGEGMRIWIDGVPCMLEDVLKMAEEEREEFEKRG
Ga0307479_120029181	3300031962	Hardwood Forest Soil	MSSYPKLNVSLKILKLAGHQIGDAHIPPSRDGHTMRVWIDGVPCTLEDVLKMLEEEIKESEQPG
Ga0306924_123729481	3300032076	Soil	MSSNPRLDAALTILRDAGHQIGDAHIPRQDGDAMRIWIDGVPCAFEDVLKMAEEERKESEQSG
Ga0307470_105026491	3300032174	Hardwood Forest Soil	MSSDPRVDAALMILRDAGHQIGDTYFAPDDGGTLKIWIDGVPCTLRGVLKMAEDEIEAKDEE
Ga0307471_1002814751	3300032180	Hardwood Forest Soil	MSSEPKLNVALKILKLAGHQIGDAHIPPSQDGHTMRVWIDGVSCTLEDVLKTVEEEIKRI
Ga0307471_1006518211	3300032180	Hardwood Forest Soil	MSALLTEKWKEIRLMEMVDLNLDVALKILKAAGHQIGDAYIPPAPHGDAMRIWIDGVPCTLRGVLRMAEVVIEAKGEEKPEQPR
Ga0307472_1000858992	3300032205	Hardwood Forest Soil	MSSEPKLSVTLKILKVAGHQIGDAHIPPSQDGHTMRVWIDGVSCTLEDVLKTVEEEIKRI
Ga0307472_1005857152	3300032205	Hardwood Forest Soil	MTSDLNLGVALKILKAAGHQIGDAHIPPAPHGDAMRIWIDGVPCTLRGVLKMAEEEIEAKHEEKTE
Ga0307472_1009202891	3300032205	Hardwood Forest Soil	MSSDPRLDAALMILRDAGHQIGEAYIPPPQDGEGMRIWIDGVPCMLEDVLKMAEEERKEFEKRS
Ga0307472_1012622182	3300032205	Hardwood Forest Soil	MSADLKLDVALKLLKVAGHQIGDAHIPPPPRREGLRIWIDGVPCTFVGVFKMADEELRESAQPG
Ga0307472_1015098881	3300032205	Hardwood Forest Soil	MSSDPRLEAALTILRDAGHQIGDTYFAPDDGGTLKIWIDGVPCTLRGVFRMAEEEIEAKDEEKPESPG
Ga0307472_1021853222	3300032205	Hardwood Forest Soil	MSSDPKLDVALKILKLAGHQIGVAHILPPLHGYAMRISIDGVPCTFEGVLKMVEEEIRESEQPG
Ga0307472_1027035121	3300032205	Hardwood Forest Soil	MSSDPRLDAALTILRDAGHQIGDTHIPLQDGDAMRIWIDGVRCAFEDVLKMAEEERNESEQHG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077817

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences