Metagenome Family F077754

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077754
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	49 residues
Representative Sequence	MAEEPTAPTPLDAIDLQSLSDEELQRLIQLLMSERERRMGLEPGPEDPE
Number of Associated Samples	54
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.09 %
% of genes near scaffold ends (potentially truncated)	18.80 %
% of genes from short scaffolds (< 2000 bps)	78.63 %
Associated GOLD sequencing projects	48
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.795 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (28.205 % of family members)
Environment Ontology (ENVO)	Unclassified (31.624 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (30.769 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.77% β-sheet: 0.00% Coil/Unstructured: 66.23%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF01966	HD	9.40
PF00248	Aldo_ket_red	7.69
PF00571	CBS	5.98
PF02517	Rce1-like	5.13
PF00872	Transposase_mut	2.56
PF01654	Cyt_bd_oxida_I	1.71
PF00857	Isochorismatase	1.71
PF00144	Beta-lactamase	0.85
PF03061	4HBT	0.85
PF01408	GFO_IDH_MocA	0.85
PF13551	HTH_29	0.85
PF03721	UDPG_MGDP_dh_N	0.85
PF00004	AAA	0.85
PF03861	ANTAR	0.85
PF12681	Glyoxalase_2	0.85
PF13380	CoA_binding_2	0.85
PF13683	rve_3	0.85
PF07883	Cupin_2	0.85
PF00291	PALP	0.85
PF13601	HTH_34	0.85
PF01327	Pep_deformylase	0.85
PF02641	DUF190	0.85
PF01370	Epimerase	0.85
PF00156	Pribosyltran	0.85
PF00106	adh_short	0.85
PF00196	GerE	0.85
PF05368	NmrA	0.85
PF05239	PRC	0.85
PF07228	SpoIIE	0.85
PF05598	DUF772	0.85
PF01042	Ribonuc_L-PSP	0.85
PF13298	LigD_N	0.85
PF01565	FAD_binding_4	0.85
PF01451	LMWPc	0.85
PF13565	HTH_32	0.85
PF02371	Transposase_20	0.85
PF09335	SNARE_assoc	0.85
PF12728	HTH_17	0.85
PF00589	Phage_integrase	0.85
PF01883	FeS_assembly_P	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	5.13
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	5.13
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	2.56
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	1.71
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.71
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	1.71
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.85
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.85
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.85
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.85
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.85
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.85
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.85
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.85
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.85
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.85
COG1993	PII-like signaling protein	Signal transduction mechanisms [T]	0.85
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.85
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.85
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.85
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	0.85
COG0242	Peptide deformylase	Translation, ribosomal structure and biogenesis [J]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.79 %
Unclassified	root	N/A	28.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.79 %
Unclassified	root	N/A	28.21 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.79 %
Unclassified	root	N/A	28.21 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	47.86 %
Unclassified	root	N/A	28.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	37.61 %
Unclassified	root	N/A	28.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.21 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	25.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.21 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	10.26 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	5.13 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.21 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.26 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	5.13 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.85 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.21 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.26 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	5.13 %
Bailinhaonella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Bailinhaonella	0.85 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.21 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.26 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	5.13 %
Bailinhaonella thermotolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Bailinhaonella → Bailinhaonella thermotolerans	0.85 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10450546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	550	Open in IMG/M
3300000956\|JGI10216J12902_100225301	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300000956\|JGI10216J12902_106325019	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300002899\|JGIcombinedJ43975_10066285	Not Available	626	Open in IMG/M
3300003373\|JGI25407J50210_10000116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11448	Open in IMG/M
3300003373\|JGI25407J50210_10012347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2190	Open in IMG/M
3300003373\|JGI25407J50210_10021769	All Organisms → cellular organisms → Bacteria	1666	Open in IMG/M
3300003373\|JGI25407J50210_10024180	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300003373\|JGI25407J50210_10055543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	999	Open in IMG/M
3300003373\|JGI25407J50210_10060311	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300004016\|Ga0058689_10176717	Not Available	509	Open in IMG/M
3300004463\|Ga0063356_100763775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1342	Open in IMG/M
3300005562\|Ga0058697_10013064	All Organisms → cellular organisms → Bacteria	2791	Open in IMG/M
3300005562\|Ga0058697_10033616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1884	Open in IMG/M
3300005562\|Ga0058697_10053628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1553	Open in IMG/M
3300005562\|Ga0058697_10173876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	957	Open in IMG/M
3300005562\|Ga0058697_10215454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	878	Open in IMG/M
3300005562\|Ga0058697_10221623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	867	Open in IMG/M
3300005981\|Ga0081538_10005068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11973	Open in IMG/M
3300005981\|Ga0081538_10005911	All Organisms → cellular organisms → Bacteria	10905	Open in IMG/M
3300005981\|Ga0081538_10090217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1588	Open in IMG/M
3300005981\|Ga0081538_10155014	Not Available	1029	Open in IMG/M
3300005981\|Ga0081538_10277191	Not Available	625	Open in IMG/M
3300005985\|Ga0081539_10063424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Bailinhaonella → Bailinhaonella thermotolerans	2016	Open in IMG/M
3300006169\|Ga0082029_1394803	Not Available	640	Open in IMG/M
3300006894\|Ga0079215_11680273	Not Available	507	Open in IMG/M
3300006918\|Ga0079216_10782476	Not Available	697	Open in IMG/M
3300009789\|Ga0126307_10046631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3380	Open in IMG/M
3300009789\|Ga0126307_10075544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2655	Open in IMG/M
3300009789\|Ga0126307_10259806	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1396	Open in IMG/M
3300009789\|Ga0126307_10305542	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300009789\|Ga0126307_11424453	All Organisms → cellular organisms → Bacteria → Terrabacteria group	562	Open in IMG/M
3300009840\|Ga0126313_10004274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8405	Open in IMG/M
3300009840\|Ga0126313_10032882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3571	Open in IMG/M
3300009840\|Ga0126313_10308123	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1240	Open in IMG/M
3300009840\|Ga0126313_10796370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	769	Open in IMG/M
3300010037\|Ga0126304_10095101	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1876	Open in IMG/M
3300010038\|Ga0126315_10022289	All Organisms → cellular organisms → Bacteria	3202	Open in IMG/M
3300010038\|Ga0126315_10142496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1413	Open in IMG/M
3300010038\|Ga0126315_10343555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	929	Open in IMG/M
3300010040\|Ga0126308_10119199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1637	Open in IMG/M
3300010041\|Ga0126312_10198315	Not Available	1402	Open in IMG/M
3300010041\|Ga0126312_10637390	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300010042\|Ga0126314_10487712	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300010042\|Ga0126314_10535072	Not Available	852	Open in IMG/M
3300010042\|Ga0126314_10670564	Not Available	759	Open in IMG/M
3300010044\|Ga0126310_10247671	Not Available	1200	Open in IMG/M
3300010045\|Ga0126311_11488806	All Organisms → cellular organisms → Bacteria → Terrabacteria group	567	Open in IMG/M
3300010166\|Ga0126306_10181072	Not Available	1582	Open in IMG/M
3300010999\|Ga0138505_100022754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	814	Open in IMG/M
3300014487\|Ga0182000_10047018	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300014487\|Ga0182000_10105978	Not Available	952	Open in IMG/M
3300014487\|Ga0182000_10213512	All Organisms → cellular organisms → Bacteria → Terrabacteria group	748	Open in IMG/M
3300017965\|Ga0190266_10064482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1362	Open in IMG/M
3300018432\|Ga0190275_10292109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1594	Open in IMG/M
3300018466\|Ga0190268_10209553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1074	Open in IMG/M
3300018476\|Ga0190274_13444663	Not Available	533	Open in IMG/M
3300019377\|Ga0190264_10560963	Not Available	802	Open in IMG/M
3300019767\|Ga0190267_11429792	Not Available	527	Open in IMG/M
3300021445\|Ga0182009_10742967	Not Available	534	Open in IMG/M
3300026670\|Ga0208216_100402	All Organisms → cellular organisms → Bacteria	1521	Open in IMG/M
3300027718\|Ga0209795_10068012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1048	Open in IMG/M
3300027718\|Ga0209795_10127111	Not Available	723	Open in IMG/M
3300027718\|Ga0209795_10165322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	623	Open in IMG/M
3300027718\|Ga0209795_10216229	Not Available	537	Open in IMG/M
3300027718\|Ga0209795_10244541	Not Available	502	Open in IMG/M
3300027750\|Ga0209461_10013258	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1422	Open in IMG/M
3300028878\|Ga0307278_10105943	Not Available	1264	Open in IMG/M
3300030496\|Ga0268240_10049361	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300030499\|Ga0268259_10003976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2524	Open in IMG/M
3300030499\|Ga0268259_10030131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1042	Open in IMG/M
3300030510\|Ga0268243_1005070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2297	Open in IMG/M
3300030510\|Ga0268243_1022666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1252	Open in IMG/M
3300030510\|Ga0268243_1030290	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300030514\|Ga0268253_10093390	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300030516\|Ga0268255_10076074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1035	Open in IMG/M
3300030516\|Ga0268255_10090926	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300030516\|Ga0268255_10251639	Not Available	508	Open in IMG/M
3300031548\|Ga0307408_100003406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10906	Open in IMG/M
3300031548\|Ga0307408_100048220	All Organisms → cellular organisms → Bacteria	3054	Open in IMG/M
3300031548\|Ga0307408_100266942	Not Available	1419	Open in IMG/M
3300031548\|Ga0307408_100281096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1386	Open in IMG/M
3300031548\|Ga0307408_100446907	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300031548\|Ga0307408_101563779	Not Available	625	Open in IMG/M
3300031548\|Ga0307408_101920254	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300031731\|Ga0307405_10018068	All Organisms → cellular organisms → Bacteria → Proteobacteria	3882	Open in IMG/M
3300031731\|Ga0307405_10022677	All Organisms → cellular organisms → Bacteria	3554	Open in IMG/M
3300031731\|Ga0307405_10040409	All Organisms → cellular organisms → Bacteria	2825	Open in IMG/M
3300031731\|Ga0307405_10085319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2075	Open in IMG/M
3300031824\|Ga0307413_10251599	All Organisms → cellular organisms → Bacteria	1311	Open in IMG/M
3300031824\|Ga0307413_10457983	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300031824\|Ga0307413_10862951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	766	Open in IMG/M
3300031824\|Ga0307413_11349581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	625	Open in IMG/M
3300031852\|Ga0307410_10115428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1949	Open in IMG/M
3300031852\|Ga0307410_10519440	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300031852\|Ga0307410_11585248	Not Available	578	Open in IMG/M
3300031901\|Ga0307406_10234926	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1371	Open in IMG/M
3300031901\|Ga0307406_10877869	Not Available	762	Open in IMG/M
3300031901\|Ga0307406_10903043	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300031901\|Ga0307406_11418052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	609	Open in IMG/M
3300031901\|Ga0307406_11559906	Not Available	582	Open in IMG/M
3300031995\|Ga0307409_100022053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4382	Open in IMG/M
3300031995\|Ga0307409_101661052	All Organisms → cellular organisms → Bacteria → Terrabacteria group	667	Open in IMG/M
3300031995\|Ga0307409_102460780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	549	Open in IMG/M
3300032002\|Ga0307416_101165497	Not Available	876	Open in IMG/M
3300032002\|Ga0307416_101421688	All Organisms → cellular organisms → Bacteria → Terrabacteria group	799	Open in IMG/M
3300032002\|Ga0307416_103537576	Not Available	523	Open in IMG/M
3300032004\|Ga0307414_12011746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539	Open in IMG/M
3300032005\|Ga0307411_11027020	All Organisms → cellular organisms → Bacteria → Terrabacteria group	739	Open in IMG/M
3300032005\|Ga0307411_12292956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	507	Open in IMG/M
3300032126\|Ga0307415_100111765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2029	Open in IMG/M
3300032159\|Ga0268251_10559335	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300034172\|Ga0334913_003676	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4587	Open in IMG/M
3300034174\|Ga0334932_026693	Not Available	976	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	56.41%
Environmental	Environmental	43.59%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	56.41%
Terrestrial	Environmental → Terrestrial	43.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.21%
Phylloplane	Host-Associated → Plants → Phylloplane	13.68%
Roots	Host-Associated → Plants → Roots	9.40%
Phyllosphere	Host-Associated → Plants → Phyllosphere	3.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.71%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	28.21%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	13.68%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	9.40%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	3.42%
Loam	Environmental → Terrestrial → Soil → Loam	1.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.71%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	28.21%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	13.68%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	9.40%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	3.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.71%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	1.71%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.71%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	28.21%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	21.37%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	13.68%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	9.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.98%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	3.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.71%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.71%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.85%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.85%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300026670	Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1111 (SPAdes)	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300030499	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030514	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M
3300034174	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_104505462	3300000550	Soil	MAEEPTAATPLDAIDLQSLSDEELKRLTQLLMGERERRMGLEPGSEDPE*
JGI10216J12902_1002253011	3300000956	Soil	MADEPAPIPLDALDLESLSDEQLQRLTQLLMSERERRMGLEPGPEDPL*
JGI10216J12902_1063250193	3300000956	Soil	MAEEFTAPTPPDAIDIQSLNDEELQHLIQLLMRERERRMGLEPGPEDPE*
JGIcombinedJ43975_100662852	3300002899	Soil	MAEEPTAPTPLDAIDLQSLSDEELQRLIQLLMSERERRMGLEPGPEDPE*
JGI25407J50210_100001163	3300003373	Tabebuia Heterophylla Rhizosphere	MAEEPTAPTPLDAIDTQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE*
JGI25407J50210_100123471	3300003373	Tabebuia Heterophylla Rhizosphere	MAEESTAPTPLDAIDVQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE*
JGI25407J50210_100217691	3300003373	Tabebuia Heterophylla Rhizosphere	MADEPTARAPLDAIDLESLSDEELQRLIHLLMSERERRMGLEPGPEDPV*
JGI25407J50210_100241803	3300003373	Tabebuia Heterophylla Rhizosphere	MAEEPTAPTPLDAIDLQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE*
JGI25407J50210_100555432	3300003373	Tabebuia Heterophylla Rhizosphere	MAEESTAPTPPDAIDVQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE*
JGI25407J50210_100603112	3300003373	Tabebuia Heterophylla Rhizosphere	MTEQPAAGSPLDAIDLTSFSDEELQRLTQRIISERERRMGLEPGPEDPAE*
Ga0058689_101767172	3300004016	Agave	MAEEPTARSPLDAIDLQSFTDEELQRLSQLIISERERRMGLEPGPEEPV*
Ga0063356_1007637751	3300004463	Arabidopsis Thaliana Rhizosphere	MAEEPTAATPLDAIDLQSLSDEELKRLTQLLMSERERRMGLEPGPEDPE*
Ga0058697_100130643	3300005562	Agave	MAEEPTDRTPLDAIDLQSFTDEELQRLSQLIISERERRMGLEPGPEAPA*
Ga0058697_100336162	3300005562	Agave	MAEEPTVPTPLDAIDLESLSDDELRRLTQLLMSERERRMGLEPGPEDPL*
Ga0058697_100536284	3300005562	Agave	MAEEPAAAPLDAIDLQSLSDEELKRLTQLLMGERERRMGLEPGPEDPE*
Ga0058697_101738762	3300005562	Agave	MAEEPTVPTPLDAIDLQSLSDEDLQRLIQLLMGERERRMGLEPGPEDPE*
Ga0058697_102154541	3300005562	Agave	MAEESPVPTPLDAIDLQSLSDEELQRLTQLLMSERERRMGLEPGAEDPV*
Ga0058697_102216232	3300005562	Agave	MAEEPTVPTPLDAIDLQSLSDEDLQRLIQLLMGERERRMGLEPGPEDPG*
Ga0081538_100050689	3300005981	Tabebuia Heterophylla Rhizosphere	MAEEPTARTSLDALDLEALSDEELQRLIQLLMTERERRMGLEPGPEDPV*
Ga0081538_1000591111	3300005981	Tabebuia Heterophylla Rhizosphere	MAEEPTARTPLDAIDLQTFTDEELQRLSQLIISERERRMGLEPGPEDPE*
Ga0081538_100902173	3300005981	Tabebuia Heterophylla Rhizosphere	MAEEPTARASFDAIDLESLSDEELRRLIQLLMSEQERRMGLEPGPDDPP*
Ga0081538_101550142	3300005981	Tabebuia Heterophylla Rhizosphere	MADKPAAPILLDALDLESLSDEELQRLIQLLMSERERRLGLEPGPEDPL*
Ga0081538_102771912	3300005981	Tabebuia Heterophylla Rhizosphere	MAEEPTAPTPPDAIDTQSLSDEELQRLIQLLMRERERRMGLEPGPEEPE*
Ga0081539_100634243	3300005985	Tabebuia Heterophylla Rhizosphere	MAEEPTTPTPLDAIDLQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE*
Ga0082029_13948032	3300006169	Termite Nest	MADEPAAPIPLDFESLSDEELQRLIQLLMSERERRMGLEPGPEDPV*
Ga0079215_116802732	3300006894	Agricultural Soil	MAEEPTAPSPLDAIDLESLSDDDLQRLTQLLMRERERRMGLEPGPEDPL*
Ga0079216_107824763	3300006918	Agricultural Soil	MAEEPTVPSPLDAIDLESLSDDELRRLTQLLMRERERRMGLEPGPEDPL*
Ga0126307_100466313	3300009789	Serpentine Soil	MAEEPTARTSLDAIDLASLSDEELQRLIRLLMSERERRMGLEPGPEDPV*
Ga0126307_100755442	3300009789	Serpentine Soil	MAEEPTVPTPLDAIDLESLSDEELQRLIQLLMSERERRMGLEPGPEDPL*
Ga0126307_102598062	3300009789	Serpentine Soil	MADEPAAPTPLDALNLESLSDEELQRLTQLLMSERERRMGLEPGPEDPL*
Ga0126307_103055423	3300009789	Serpentine Soil	MADEPAAPTPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPL*
Ga0126307_114244532	3300009789	Serpentine Soil	MAEEPTVPSPLDAIDLESLSDDELRRLTQLLMSERERRMGLEPGPEDPL*
Ga0126313_100042747	3300009840	Serpentine Soil	MAEEPTARTSLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPV*
Ga0126313_100328822	3300009840	Serpentine Soil	MADEPAAPIPLDALDLESLSDEELQRLIQLLMSERERRLGLEPGPEDPL*
Ga0126313_103081232	3300009840	Serpentine Soil	MADEPAPIPLDALDLESLSDEELQRLTQLLMGERERRMGLEPGPEDPL*
Ga0126313_107963702	3300009840	Serpentine Soil	MAEEPTVPSPLDAINLESLSDDELRRLTQLLMSERERRMGLEPGPEDPL*
Ga0126305_101140681	3300010036	Serpentine Soil	SWWPTHSEPQEGPMADEPAPIPLDALDLESLSDEELQHLTQLLMGERERRMGLEPGPEDPL*
Ga0126305_110517302	3300010036	Serpentine Soil	LDAIDLESLSDEELQRLIQLLMSERERRMGLEPGPEDPV*
Ga0126304_100951012	3300010037	Serpentine Soil	MAEEPTVPSALDAIDLESLSEDELQRLIQLLMSERERRMGLEPGPEDPV*
Ga0126315_100222892	3300010038	Serpentine Soil	MAEEPTAPTPLDAIDVQSLSDEDLQRLIQLLMRERERRMGLEPGPEDPE*
Ga0126315_101424962	3300010038	Serpentine Soil	MADEPAAPTPLDALDLESLSDEELQRLVQLLMSERERRLGLEPGPEDPL*
Ga0126315_103435551	3300010038	Serpentine Soil	THSEPQEGPMADEPAAPTPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPL*
Ga0126308_101191993	3300010040	Serpentine Soil	MADEPAPIPLDALDLESLSDEELQRLTQMLMSERERRMGLEPGPEDPL*
Ga0126312_101983153	3300010041	Serpentine Soil	MAEEPTVLIPFDAIDLQSLSDEELQRLIQLLMSERERRLGLEPGAEDPE*
Ga0126312_106373901	3300010041	Serpentine Soil	MAEEPTDRTPLDAIDLQSFTDEELQRLSQLIISERERRMGLEPGPEDPA*
Ga0126314_104877122	3300010042	Serpentine Soil	MADEPAAPTPLDALDLESLSDEELQRLTQLLISERERRMGLEPGPEDPL*
Ga0126314_105350722	3300010042	Serpentine Soil	MAEEPTVPSALDAIDLESLSDEELQRLIQLLMSERERRMGLEPGPED
Ga0126314_106705641	3300010042	Serpentine Soil	MVEEPTVPSALDAIDLESLSEDELQRLIQLLMSERERRMGLEP
Ga0126310_102476711	3300010044	Serpentine Soil	MAEEPAATTPLDAIDLQSLSDEELKRLTQLLMSERERRMGLEPGPEDPE*
Ga0126311_114888061	3300010045	Serpentine Soil	PLDKIDFESLSDDDLRGLTRLLMREGERRMGLEPGPEGPR*
Ga0126306_101810721	3300010166	Serpentine Soil	THPEPQEGPMAEEPTVPSALDAIDLESLSDEELQRLIQLLMSERERRMGLEPGPEDPV*
Ga0126306_107518762	3300010166	Serpentine Soil	DALNLESLSDEELQRLTQLLMSERERRMGLEPGPEDPL*
Ga0138505_1000227541	3300010999	Soil	MAEEPTAATPLDAVDLQSLSDEELKRLTQLLMSERERRMGLEPGPEDSE*
Ga0182000_100470182	3300014487	Soil	MAEESTAPTPPDAIDVQSLSDEDLQRLIQLLMRERERRMGLEPGPEDPE*
Ga0182000_101059782	3300014487	Soil	MAEEPTVPTPLDAIDLESLSDDELQRLTQLLMSERERRMGLEPGPEDPL*
Ga0182000_102135122	3300014487	Soil	MADEPAAPIPLDFESLSDEELQRLIQLLMSERERRMGLEPGPEDPL*
Ga0190266_100644824	3300017965	Soil	MAEEPTAATPLDAIDLQSLSDEELKRLTQLLMSERERRMGLEPGPEDPE
Ga0190275_102921091	3300018432	Soil	MAEEPTAPIPLDAIDLQSLSDEELQRLTQRLMSERERRMGLEPGAEDPV
Ga0190268_102095531	3300018466	Soil	MAEEPTAPTPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPV
Ga0190274_134446632	3300018476	Soil	MAEEPSARTPLDAIDFSSLTDEELQRLYELTIGEKERRMALEPGSEDPA
Ga0190264_105609632	3300019377	Soil	MTEEPTTGASPDEIDLTSFSDDDLQRLSQLIISERERRMGLEPGPDDPSS
Ga0190267_114297921	3300019767	Soil	MAEEPTVPTPLDAIDLESLSDDELQRLTQLLMSERERRMGLEPGPEDPL
Ga0182009_107429671	3300021445	Soil	MAEEPAAAPLDAIDLQSLSDEELKRLTQLLMSERERRMGLEPGPEDPE
Ga0208216_1004022	3300026670	Soil	MAEEPTARTSLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPV
Ga0209795_100680122	3300027718	Agave	MAEEPTARTSLDALDLQSLSDEELQRLTQLLMSERERRMGLEPGPEDPV
Ga0209795_101271112	3300027718	Agave	MAEEPAAAAPLDAIDLQSLSDEELKRLTQLLMSERERRMGLEPGPEDPE
Ga0209795_101653222	3300027718	Agave	MAEEPIAPTPPDAIDIQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE
Ga0209795_102162291	3300027718	Agave	MAEESTARTPLDAIDLQSFTDEELQRLSQLIISEREQRMGLEPGPDDDV
Ga0209795_102445411	3300027718	Agave	MAEEPTAATPLDAIDLQSLSDEELRRLTQLLMSERERRMGLEPGPEEP
Ga0209461_100132583	3300027750	Agave	MAEEPTVPTPLDAIDLESLSDDELRRLTQLLMSERERRMGLEPGPEDPL
Ga0307278_101059432	3300028878	Soil	MAEEPTAQTPLDAIDLESLSDEELRRLTQLLMSERERRMGLEPGPEDPV
Ga0268240_100493612	3300030496	Soil	MAEESTAPTPPDAIDVQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE
Ga0268259_100039761	3300030499	Agave	EPQEGPMVDEPAAPIPLDALDLESLSDEELQRLIQLLMSERERRLGLEPGPEDPL
Ga0268259_100301312	3300030499	Agave	MAEEPTVPTPLDAIDLQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE
Ga0268243_10050704	3300030510	Soil	MAEEPAAAPLDAMDLQSLSDEELKRLTRLLMGERERRMGLEPGPEDPE
Ga0268243_10226661	3300030510	Soil	MAEEPTVPTPLDAIDLQSLSDEDLQRLIQLLMGERERRMGLEPGPEDPE
Ga0268243_10302902	3300030510	Soil	MAEEPTAPTPPDAIDIQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE
Ga0268253_100933901	3300030514	Agave	MAEEPTAPTPLDAIDLQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE
Ga0268255_100760743	3300030516	Agave	MAEEPAAAPLDAIDLQSLSDEELKRLTRLLMGERERRMGLEPGPEDPE
Ga0268255_100909262	3300030516	Agave	PQEGLMAEEPTAPTPPDAIDIQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE
Ga0268255_102516392	3300030516	Agave	MAEEPTARSPLDAIDLQSFTDEELQRLSQLIISERERRMGLEPGPEEPV
Ga0307408_1000034062	3300031548	Rhizosphere	MADEPAPIPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPKDPL
Ga0307408_1000482202	3300031548	Rhizosphere	MAEEPAAAPLDAIDLQSLSDEELKRLTQLLMGERERRMGLEPGPEDPE
Ga0307408_1002669421	3300031548	Rhizosphere	MAEEPTVPSALDAIDLESLSDEELQRLIQLLMSERERRMGLEPGPEDPV
Ga0307408_1002810962	3300031548	Rhizosphere	MAEEPTAPTPLDAIDVQSLSDEDLQRLIQLLMRERERRMGLEPGPEDPE
Ga0307408_1004469073	3300031548	Rhizosphere	MAEEPTVPTPFDAIDLQSLSDEELQRLIQLLMSERERRLGLEPGAEDPE
Ga0307408_1015637791	3300031548	Rhizosphere	MAEEPTAPTPLDAIDLQSLNDEELQRLIQLLMRERERRMGLEPGPEDPE
Ga0307408_1019202541	3300031548	Rhizosphere	VAEEPTVPAPLDKIDFESLSDDELRGLTRLLMREGERRMGLEPGPEGPL
Ga0307405_100180685	3300031731	Rhizosphere	MAEEPTVPTPLDAIDLESLSDEELQRLIQLLMSERERRMGLEPGPEDPL
Ga0307405_100226771	3300031731	Rhizosphere	VAEEPTVPAPLDKIDFESLSDDELRGLTRLLMREGERRMG
Ga0307405_100404093	3300031731	Rhizosphere	MADEPAAPIPLDALDLESLSDEELQRLIQLLMSERERRLGLEPGPEDPL
Ga0307405_100853193	3300031731	Rhizosphere	MVEEPAAAPLDAIDLQSLSDEELKRLTQLLMGERERRMGLEPGPEDPE
Ga0307413_102515992	3300031824	Rhizosphere	MADEPAAPTPLDALDLESLSDEELQRLIQLLMSERERRMGLEPGPEDPL
Ga0307413_104579833	3300031824	Rhizosphere	PIPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPL
Ga0307413_108629511	3300031824	Rhizosphere	MAEESTAPTPPDAIDVQSLSDEEQQRLIQLLMRERERRMGLEPGPEDPE
Ga0307413_113495812	3300031824	Rhizosphere	TVPTPFDAIDLQSLSDEELQRLIQLLMSERERRLGLEPGAEDPE
Ga0307410_101154281	3300031852	Rhizosphere	MAEEPAAAPLDAIDLQSLSDEELKRLTQLLMGERERRMGL
Ga0307410_105194402	3300031852	Rhizosphere	EEPTVPTPFDAIDLQSLSDEELQRLIQLLMSERERRLGLEPGAEDPE
Ga0307410_115852482	3300031852	Rhizosphere	VAEEPTVPAPLDKIDFESLTDDELRGLTRLLMREGERRMGLEPGPEGPL
Ga0307406_102349263	3300031901	Rhizosphere	EPTVPTRFDAIDLQSLSDEELQRLIQLLMSERERRLGLEPGAEDPE
Ga0307406_108778692	3300031901	Rhizosphere	MTEEPTARSPLDAIDLQSFTDEELQRLSQLIISERERRMGLEPGPEEPV
Ga0307406_109030431	3300031901	Rhizosphere	MAEEPTAPTPLDAIDLQSLNDEELRRLIQLLMRERERRMGLEPGPEDPE
Ga0307406_114180521	3300031901	Rhizosphere	MAEEPTVPIPFDAIDLQSLSDEELQRLIQLLMSERERRLGLEPGAEDPE
Ga0307406_115599061	3300031901	Rhizosphere	IPMAEEPAAAPLDAIDLQSLSDEELKRLTQLLMGERERRMGLEPGPEDPE
Ga0307409_1000220536	3300031995	Rhizosphere	EGPMADEPAPIPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPKDPL
Ga0307409_1016610522	3300031995	Rhizosphere	LVPTHPEPQESPVAEEPTVPAPLDKIDFESLSDDELRGLTRLLMREGERRMGLEPGPEGP
Ga0307409_1024607802	3300031995	Rhizosphere	MADEPAAPTPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPL
Ga0307416_1011654972	3300032002	Rhizosphere	MAEEPTAKTPLDAIDLESLSDEELQRLTQLLMRERERRMGLEPGPEDPV
Ga0307416_1014216881	3300032002	Rhizosphere	MAEEPTVPTPLDKIDFESLSDDDLRGLTRLLMREGERRMGLEPGPEGPR
Ga0307416_1035375762	3300032002	Rhizosphere	MADEPAAPTPLDALDLESLSDEELQRLVQLLMSERERRLGLEPGPEDPL
Ga0307414_120117461	3300032004	Rhizosphere	PTPFDAIDLQSLSDEELQRLIQLLMSERERRLGLEPGAEDPE
Ga0307411_110270202	3300032005	Rhizosphere	MADEPAPIPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPL
Ga0307411_122929562	3300032005	Rhizosphere	MAEEPTVPIPFDAIDLQSLSDDELQRLIQLLMSERERRLGLEPGAEDPE
Ga0307415_1001117651	3300032126	Rhizosphere	PQESPVAEEPTVPAPLDKIDFESLSDDELRGLTRLLMREGERRMGLEPGPEGPL
Ga0268251_105593351	3300032159	Agave	SLPIPEPQEGLMAEEPTVPTPLDAIDLQSLSDADLQRLIQLLMGERERRMGLEPGPEDPE
Ga0334913_003676_3225_3374	3300034172	Sub-Biocrust Soil	MAEEPTVPGVLDAIDLESLSDEELQRLIQLLMRERERRMGLEPGSEDPA
Ga0334932_026693_186_335	3300034174	Sub-Biocrust Soil	MAEEPTDRTPLDAIDLQSFTDEELQRLSQLIISERERRMGLEPGPEDPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F077754

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences