Metagenome / Metatranscriptome Family F077741

Overview

Basic Information

• Family ID: F077741
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 117
• Average Sequence Length: 46 residues
• Representative Sequence: MSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAAKPAA
• Number of Associated Samples: 94
• Number of Associated Scaffolds: 117

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 61.54 %
• % of genes near scaffold ends (potentially truncated): 49.57 %
• % of genes from short scaffolds (< 2000 bps): 84.62 %
• Associated GOLD sequencing projects: 75
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (79.487 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere (9.402 % of family members)
• Environment Ontology (ENVO): Unclassified (54.701 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (60.684 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 73.33%
  β-sheet: 0.00%
  Coil/Unstructured: 26.67%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF00313	CSD	37.61
PF13419	HAD_2	15.38
PF15919	HicB_lk_antitox	4.27
PF00687	Ribosomal_L1	4.27
PF05685	Uma2	4.27
PF02894	GFO_IDH_MocA_C	3.42
PF01408	GFO_IDH_MocA	3.42
PF02604	PhdYeFM_antitox	1.71
PF03681	Obsolete Pfam Family	1.71
PF04563	RNA_pol_Rpb2_1	0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0081	Ribosomal protein L1	Translation, ribosomal structure and biogenesis [J]	4.27
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	4.27
COG0673	Predicted dehydrogenase	General function prediction only [R]	3.42
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	1.71
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	1.71
COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	Transcription [K]	0.85
COG0126	3-phosphoglycerate kinase	Carbohydrate transport and metabolism [G]	0.85

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.49 %
Unclassified	root	N/A	20.51 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.49 %
Unclassified	root	N/A	20.51 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.49 %
Unclassified	root	N/A	20.51 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	42.74 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Unclassified	root	N/A	20.51 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	38.46 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.85 %
Unclassified	root	N/A	20.51 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.85 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	9.40 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	9.40 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.85 %
Unclassified	root	N/A	20.51 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	17.95 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9.40 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	17.95 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.85 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.85 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	3.42 %
Unclassified	root	N/A	20.51 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	4.27 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9.40 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	17.95 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	4.27 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	2.56 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.85 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.85 %
Unclassified	root	N/A	20.51 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	0.85 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9.40 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	17.95 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.85 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	4.27 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	2.56 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.85 %
Unclassified	root	N/A	20.51 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.85 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9.40 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	17.95 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.85 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	4.27 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	2.56 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.85 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.85 %
Unclassified	root	N/A	20.51 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300004479|Ga0062595_100810714	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	773
3300004631|Ga0058899_11955623	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	513
3300004635|Ga0062388_100762158	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	912
3300004803|Ga0058862_10145291	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	749
3300005327|Ga0070658_10006657	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	9363
3300005327|Ga0070658_11618962	All Organisms → cellular organisms → Bacteria	561
3300005330|Ga0070690_100298964	All Organisms → cellular organisms → Bacteria	1154
3300005336|Ga0070680_100388653	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1188
3300005337|Ga0070682_101775278	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	537
3300005338|Ga0068868_100072685	All Organisms → cellular organisms → Bacteria	2744

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	49.57%
Host-Associated	Host-Associated	50.43%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	12.82%
Human	Host-Associated → Human	0.85%
Plants	Host-Associated → Plants	49.57%
Terrestrial	Environmental → Terrestrial	36.75%

Category

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Human → Digestive System	0.85%
Freshwater	Environmental → Aquatic → Freshwater	5.98%
Peat	Environmental → Terrestrial → Peat	1.71%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.21%
Roots	Host-Associated → Plants → Roots	2.56%
Sediment	Environmental → Aquatic → Sediment	6.84%
Soil	Environmental → Terrestrial → Soil	34.19%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.95%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.85%
Loam	Environmental → Terrestrial → Soil → Loam	11.11%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.56%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.26%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	22.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.71%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.85%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.13%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.13%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.13%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.85%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.71%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.85%

Habitat

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	4.27%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.56%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.85%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.69%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	6.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.13%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.27%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.42%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.85%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.71%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	9.40%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.85%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.71%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.71%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.85%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.71%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.71%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.84%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062595_1008107142	3300004479	Soil	MSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAAKPAA*
Ga0058899_119556232	3300004631	Forest Soil	MSKTCGDMARFNRLRKQKINRRAKNRLLQAEIAARKAEKAAKPAA*
Ga0062388_1007621582	3300004635	Bog Forest Soil	MSKTCGDTARFHRLRKQKINRRARNRTLQAEIAARKAEKAANPVALKPAA*
Ga0058862_101452912	3300004803	Host-Associated	MSKTCGDTARFHRIRKQKINRRARNRTLQAEIAARKAEKTASAAASKPAA*
Ga0070658_100066577	3300005327	Corn Rhizosphere	MSKTCGDTARFHRIRKQKINRRARNRTLQAEIAARKAEKSAGAAASKPAA*
Ga0070658_116189621	3300005327	Corn Rhizosphere	CGDTARFHRIRKQKINRRAKNRVLQAEIAARKAEKAAKPAA*
Ga0070690_1002989643	3300005330	Switchgrass Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAARKAEKAAKPAA*
Ga0070680_1003886533	3300005336	Corn Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRTLQAEIAARKAEKTASAAASKPAA*
Ga0070682_1017752781	3300005337	Corn Rhizosphere	MSKSCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAVKPAA*
Ga0068868_1000726854	3300005338	Miscanthus Rhizosphere	MSKTCGDTARFHRLRKQKINRRAKNRILQAEIAARKAEKAAKPAA*
Ga0070661_1007521471	3300005344	Corn Rhizosphere	RFHRIRKQKINRRARNRTLQAEIAARKAEKSAGAAASKPAA*
Ga0070681_100981622	3300005458	Corn Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRALQAEIAARKAEKAAKPAV*
Ga0068867_1008266523	3300005459	Miscanthus Rhizosphere	IVMSKTCGDTARFHRLRKQKINRRAKNRILQAEIAARKAEKAAKPAA*
Ga0070735_104923653	3300005534	Surface Soil	MSKTCGDTARFHRLRKQKINRRAKNRALQAEIAARKAEKAAKP
Ga0070684_1005735291	3300005535	Corn Rhizosphere	PVLRKEKFMSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAARKAEKAAKPAA*
Ga0068853_1023139851	3300005539	Corn Rhizosphere	MSKTCGDTARFHRIRKQKINRRARNRTLQAEIAARKAEKSAGAA
Ga0070665_1002095881	3300005548	Switchgrass Rhizosphere	CGDTARFHRLRKQKINRRAKNRILQAEIAARKAEKAAKPAA*
Ga0068855_1001258225	3300005563	Corn Rhizosphere	MSKSCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAAKPAA*
Ga0068855_1015446263	3300005563	Corn Rhizosphere	MSKTCGDTARFHRLRKQKINRRAKNRILQAEIAARKAEKAAKPTA*
Ga0070664_1007659641	3300005564	Corn Rhizosphere	SKSCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAVKPAA*
Ga0070664_1012377991	3300005564	Corn Rhizosphere	SKSCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAAKPAA*
Ga0068857_1011435041	3300005577	Corn Rhizosphere	RKEKFMSKTCGDTARFHRIRKQKINRRAKNRALQAEIAARKAEKAAKPAV*
Ga0068857_1017984272	3300005577	Corn Rhizosphere	FHRIRKQKINRRAKNRTLQAEIAARKAEKTASAAASKPAA*
Ga0068856_1017111712	3300005614	Corn Rhizosphere	MSKTCGDTARFHRLRKQKINRRAKNRALQAEIAARKAEKASKPAA*
Ga0068866_105853711	3300005718	Miscanthus Rhizosphere	FMSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAARKAEKAAKPAA*
Ga0068863_1003673792	3300005841	Switchgrass Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRVLQAEIATRKAEKATKPAA*
Ga0068860_1007199511	3300005843	Switchgrass Rhizosphere	RAFPVLRKEKFMSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAARKAEKATKPAA*
Ga0075024_1001055563	3300006047	Watersheds	MSKTCGDTARFHRLRKQKIARRARNRALQAEIAARKAANAEKSKPAA*
Ga0075029_1003311232	3300006052	Watersheds	MSKTCGDTARFHRIRKQKINRRAKNRLLQAEIAARKAEKAAKPAA*
Ga0075029_1009160862	3300006052	Watersheds	GDTARFHRIRKQKINRRAKNRILQAEIAVRKAEKAANASALKPAA*
Ga0075018_100315326	3300006172	Watersheds	SSTKKEKVMSKTCGDTARFHRLRKQKIARRARNRALQAEIAARKAANAEKSKPAA*
Ga0097621_1003562052	3300006237	Miscanthus Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAARKAEKATKPAA*
Ga0075021_105268963	3300006354	Watersheds	TARFHRIRKQTINRRAKNRILQAEIAARKAEKAVKPAA*
Ga0075522_100524644	3300006638	Arctic Peat Soil	MSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAAKPPA*
Ga0075522_100964771	3300006638	Arctic Peat Soil	CGDTARFHRLRKQKINRRAKNRLLQAEIAARKAEKAAKPAA*
Ga0075527_101201632	3300006640	Arctic Peat Soil	MSKTCGDTARFHRLRKQKINRRAKNRALQAEIAARKAEKAAKPAA*
Ga0068865_1007602712	3300006881	Miscanthus Rhizosphere	MSKTCGDTARFHRLRKQKINKRARIRELQAAIAAKKAAAEPKPAA*
Ga0105251_105015471	3300009011	Switchgrass Rhizosphere	RAFPVLRKEKFMSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAARKAEKAAKPAA*
Ga0105240_123938811	3300009093	Corn Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAAKPTA*
Ga0105245_105853432	3300009098	Miscanthus Rhizosphere	MSKTCGDTARFHRLRKQKINRRAKNRALQAEISARKAANGEKAKPAA*
Ga0105243_100940324	3300009148	Miscanthus Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAVKPTA*
Ga0105241_106016381	3300009174	Corn Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAARKAEKAAKPA
Ga0105242_102212131	3300009176	Miscanthus Rhizosphere	KTCGDTARFHRIRKQKINRRAKNRVLQAEIAARKAEKATKPAA*
Ga0105242_103212852	3300009176	Miscanthus Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKATKPAA*
Ga0105242_116349011	3300009176	Miscanthus Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKTAKPAA*
Ga0105242_124585351	3300009176	Miscanthus Rhizosphere	MSKTCGDTARFHRLRKQKINRRAKNRALQAEIAARKAANGEKAKPAA*
Ga0105238_121662231	3300009551	Corn Rhizosphere	RLRKEKVMSKSCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAVKPAA*
Ga0105238_129159991	3300009551	Corn Rhizosphere	RKEKVMSKSCGDTARFHRIRKQKINRRAKNRILQSEIAARKAEKAAKPAA*
Ga0134128_126613302	3300010373	Terrestrial Soil	MSKTGGDTARFHRIRKQKINRRAKNRVLQAEIAARKAEKAAKPAA*
Ga0150983_115868232	3300011120	Forest Soil	MSKTCGDTARFHRLRKQKINRRARNRALQAEIAARKAEKAANPIALKPAA*
Ga0150983_127160692	3300011120	Forest Soil	MSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKSAKPAA*
Ga0150983_166614221	3300011120	Forest Soil	MSKTCGDTARFHRLRKQKINRRAKNRLLQAEIAARKAEKAAKPAA*
Ga0150985_1038889062	3300012212	Avena Fatua Rhizosphere	MSKTCGDTARFHRLRKQKINRRARNRELQAEIAARKAAAADKAKPAA*
Ga0137361_108894721	3300012362	Vadose Zone Soil	KKEKVMSKTCGDTARFHRLRKQKIARRARNRALQAEIAARKAATTEKSKPAA*
Ga0137413_118348282	3300012924	Vadose Zone Soil	MSKTCGDTARFHRLRKQKINRRARNRALQAEIAARKAEKAATAVALKPAA*
Ga0153915_118430153	3300012931	Freshwater Wetlands	MSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAVKPAA*
Ga0164305_113459651	3300012989	Soil	STKKEKVMSKTCGDTARFHRLRKQKIARRARNRALQAEIAARKAANAEKSKPAA*
Ga0157370_108689622	3300013104	Corn Rhizosphere	VRKQKINRRAMNRTLQAEIAARKAEKTAGAAASKPAA*
Ga0157374_114128451	3300013296	Miscanthus Rhizosphere	KEKFMSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAAHKAEKAAKPAA*
Ga0157375_110532331	3300013308	Miscanthus Rhizosphere	MSKTCGDTARFHRLRKQKINRRAKNRILQAEIAARKAEKAAKPTT*
Ga0120132_10540672	3300013832	Permafrost	MSKTCGDTARFHRIRKQKINRRARNRALQAEIAARKAEKAAKPAA*
Ga0181530_103879092	3300014159	Bog	MSKTCGDTARFHRLRKQRIANRMKVRALRAAIAAKKAAEPPKPAA*
Ga0181528_103921112	3300014167	Bog	MSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAARKAVKAASAVALKPAA*
Ga0163163_101181017	3300014325	Switchgrass Rhizosphere	AFPVSRKEKFMSKTCGDTARFHRIRKQKINRRAKNRALQAEIAARKAEKAAKPAV*
Ga0163163_118977091	3300014325	Switchgrass Rhizosphere	RKEKFMSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAARKAEKAAKPAA*
Ga0181522_105248991	3300014657	Bog	MSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKSA
Ga0182030_102561763	3300014838	Bog	MSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAVKAASAVALKPAA*
Ga0157379_102634433	3300014968	Switchgrass Rhizosphere	MSKTCGDTARFHRICKQKINRRAKNRILQAEIAARKAEKAAKPAA*
Ga0167658_10232962	3300015195	Glacier Forefield Soil	MSKTCGDTARFHRLRKQKINRRARNRALQAEIAARKAEKAATALALKPAA*
Ga0167650_10155094	3300015203	Glacier Forefield Soil	STKKEKVMSKTCGDTARFHRLRKQKIARRARNRALQAEIAARKAANTEKAKPAA*
Ga0181500_11483561	3300016728	Peatland	MSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAARK
Ga0163161_109649502	3300017792	Switchgrass Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRVLQAESAARKAEKAAKPA
Ga0066662_113694762	3300018468	Grasslands Soil	MSKTCGDTARFHRLRKQKIARRARNRALQAEIAERKAAANAEKSKPAA
Ga0181508_14604842	3300019256	Peatland	MSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAARKA
Ga0206355_11384193	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRTLQAEIAARKAEKT
Ga0242655_102603941	3300022532	Soil	RVLMSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAAKPAA
Ga0209483_11414373	3300025862	Arctic Peat Soil	MSKSCGDTARFHRLRKQKIRMRMRVRELKAAIAERTATADPAKPKA
Ga0209483_12590912	3300025862	Arctic Peat Soil	FHRLRKQKINRRAKNRLLQAEIAARKAEKAAKPAA
Ga0207642_103245331	3300025899	Miscanthus Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAARKAEKAAKPAA
Ga0207680_102080282	3300025903	Switchgrass Rhizosphere	MSKTCGDTARFHRLRKQKINRRAKNRILQAEIAARKAEKAAKPAA
Ga0207705_100640443	3300025909	Corn Rhizosphere	MSKTCGDTARFHRIRKQKINRRARNRTLQAEIAARKAEKSAGAAASKPAA
Ga0207707_101462522	3300025912	Corn Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRALQAEIAARKAEKAAKPAV
Ga0207707_104932402	3300025912	Corn Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRTLQAEIAARKAEKTASAAASKPAA
Ga0207695_103149004	3300025913	Corn Rhizosphere	MSKTCGDTARFHRLRKQKINRRAKNRILQAEIAARKAEKAAKPTA
Ga0207660_106339011	3300025917	Corn Rhizosphere	IPVLRKEKFMSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAARKAEKAAKPAA
Ga0207652_117493092	3300025921	Corn Rhizosphere	AFPVLRKEKFMSKTCGDTARFHRIRKQKINRRAKNRALQAEIAARKAEKAAKPAV
Ga0207687_105639621	3300025927	Miscanthus Rhizosphere	TARFHRLRKQKINKRARIRELQAAIAAKKAAAEPKPAA
Ga0207687_106883222	3300025927	Miscanthus Rhizosphere	MSKSCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAVKPAA
Ga0207687_113711981	3300025927	Miscanthus Rhizosphere	MSKTCGDTARFHRLRKQKINRRAKNRALQAEISARKAANGEKAKPAA
Ga0207644_104044223	3300025931	Switchgrass Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAAK
Ga0207644_112679891	3300025931	Switchgrass Rhizosphere	ARFHRIRKQKINRRAKNRILQAEIAARKAEKAAKPAA
Ga0207686_104180233	3300025934	Miscanthus Rhizosphere	MSKTCGDTARFHRLRKQKINKRARIRELQAAIAAKKAAAEP
Ga0207686_110775952	3300025934	Miscanthus Rhizosphere	FMSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAARKAEKAAKPAA
Ga0207667_101194854	3300025949	Corn Rhizosphere	MSKSCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAAKPAA
Ga0207677_119053831	3300026023	Miscanthus Rhizosphere	TARFHRLRKQKINRRAKNRILQAEIAARKAEKAAKPTT
Ga0207702_116705732	3300026078	Corn Rhizosphere	MSKTCGDTARFHRLRKQKINRRAKNRALQAEIAARKAEKASKPAA
Ga0207641_119050902	3300026088	Switchgrass Rhizosphere	ARFHRIRKQKINRRAKNRVLQAEIAARKAEKAAKPAA
Ga0207648_100503901	3300026089	Miscanthus Rhizosphere	TARFHRIRKQKINRRAKNRVLQAEIAARKAEKAAKPAA
Ga0207674_100504485	3300026116	Corn Rhizosphere	MSKTCGDTARFHRIRKQKINRRAKNRALQAEIAARKAEKAAKPAA
Ga0209068_102663091	3300027894	Watersheds	MSKTCGDTARFHRLRKQKIARRARNRALQAEIAARKAANAEKSKPAA
Ga0209067_105299942	3300027898	Watersheds	MSKTCGDTARFHRIRKQKINRRAKNRVLQAEIAARKAEKAGKPAA
Ga0209069_105036071	3300027915	Watersheds	MSKTCGDTARFHRIRKQRINMRARVRALRAEIALKNANKTVVATDA
Ga0209168_101646574	3300027986	Surface Soil	PLRKEKVMSKTCGDTARFHRIRKQKINRRARNRTLQAEIAARKAEKTAGAAASKPAA
Ga0268266_100253808	3300028379	Switchgrass Rhizosphere	ARFHRLRKQKINRRAKNRILQAEIAARKAEKAAKPAA
Ga0268264_116803152	3300028381	Switchgrass Rhizosphere	FHRLRKQKINRRAKNRILQAEIAARKAEKAAKPAA
Ga0265338_109333171	3300028800	Rhizosphere	KVMSKTCGDTARFHRLRKQKINRRAKNRMLQAEIAARKAEKAAKPAA
Ga0138296_14163322	3300030923	Soil	MSKTCGDTARFHRLRKQKINRRAKNRILQAEIAVRKAEKSRQARSVEV
Ga0138296_15160322	3300030923	Soil	ARFHRLRKQKINRRARNRALQAEIAARKAEKTATAVTLKPAA
Ga0138296_18044032	3300030923	Soil	GDTARFHRLRKQKIARRARNRALQAEIAARKAATTEKSKPAA
Ga0302325_101392742	3300031234	Palsa	MSKTCGDTARFHRLRKQKINRRARNRALQAEIAARKAEKAANPVALNPAA
Ga0302325_104705072	3300031234	Palsa	MSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAVKAASAVALKPAA
Ga0307468_1004441662	3300031740	Hardwood Forest Soil	MSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKTANASALKPAA
Ga0307470_101494872	3300032174	Hardwood Forest Soil	MSKTCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKTAKPAA
Ga0348332_141730721	3300032515	Plant Litter	MSKTCGDTARFHRLRKQKIAKRTKIRELRAAVEARNEAKKAAAPQPA
Ga0310810_101616191	3300033412	Soil	MSKSCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKA
Ga0310810_104318954	3300033412	Soil	KVMSKSCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAVKPAA
Ga0310811_102672324	3300033475	Soil	KSCGDTARFHRIRKQKINRRAKNRILQAEIAARKAEKAAKPAA