Metagenome / Metatranscriptome Family F077735

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077735
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	46 residues
Representative Sequence	VLRAIMDISARAISLADRPQRAIRVTSVRMRREDRSSISSRPLADLGR
Number of Associated Samples	98
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	42.11 %
% of genes near scaffold ends (potentially truncated)	81.20 %
% of genes from short scaffolds (< 2000 bps)	94.02 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.359 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds (14.530 % of family members)
Environment Ontology (ENVO)	Unclassified (15.385 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.573 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
Feature Viewer

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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF02371	Transposase_20	46.15
PF04392	ABC_sub_bind	2.56
PF01548	DEDD_Tnp_IS110	1.71
PF13495	Phage_int_SAM_4	0.85
PF00536	SAM_1	0.85
PF08734	GYD	0.85
PF01266	DAO	0.85
PF13751	DDE_Tnp_1_6	0.85
PF12773	DZR	0.85
PF02656	DUF202	0.85
PF01895	PhoU	0.85
PF12594	DUF3764	0.85
PF07750	GcrA	0.85
PF02566	OsmC	0.85
PF13565	HTH_32	0.85
PF09234	DUF1963	0.85
PF00440	TetR_N	0.85
PF11972	HTH_13	0.85
PF00582	Usp	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	47.86
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.56
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.85
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.85
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.85
COG3878	Uncharacterized conserved protein YwqG, DUF1963 family	Function unknown [S]	0.85
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.85
COG5352	Uncharacterized conserved protein	Function unknown [S]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.36 %
Unclassified	root	N/A	25.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.36 %
Unclassified	root	N/A	25.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.36 %
Unclassified	root	N/A	25.64 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.61 %
Unclassified	root	N/A	25.64 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	35.04 %
Unclassified	root	N/A	25.64 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	30.77 %
Unclassified	root	N/A	25.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.64 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	23.08 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.85 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.85 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.64 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	23.08 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.85 %
Beijerinckia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia	0.85 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.64 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	4.27 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2.56 %
unclassified Beijerinckia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia	0.85 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.85 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.64 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2.56 %
Bradyrhizobium sp. 2S1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 2S1	1.71 %
Mesorhizobium sp. M5C.F.Ca.IN.020.32.2.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. M5C.F.Ca.IN.020.32.2.1	0.85 %
Bradyrhizobium sp. AUGA SZCCT0182	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0182	0.85 %
Bradyrhizobium sp. Rc2d	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	0.85 %
Bradyrhizobium sp. AUGA SZCCT0283	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	0.85 %
Beijerinckia sp. L45	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. L45	0.85 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10189342	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1005604	All Organisms → cellular organisms → Bacteria	1440	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1011470	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300000912\|JGI12032J12867_1003425	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300000956\|JGI10216J12902_101705624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	672	Open in IMG/M
3300001177\|JGI12634J13548_1002027	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300001396\|JGI20175J14863_1024069	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300001407\|JGI20192J14887_1001559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3461	Open in IMG/M
3300001417\|JGI20196J14858_1015142	Not Available	646	Open in IMG/M
3300002073\|JGI24745J21846_1017817	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300002568\|C688J35102_120525118	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300003659\|JGI25404J52841_10019108	All Organisms → cellular organisms → Bacteria	1485	Open in IMG/M
3300004009\|Ga0055437_10072611	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300004081\|Ga0063454_100652434	Not Available	781	Open in IMG/M
3300004463\|Ga0063356_101061511	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300005165\|Ga0066869_10109286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	562	Open in IMG/M
3300005175\|Ga0066673_10057660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1979	Open in IMG/M
3300005175\|Ga0066673_10360052	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300005179\|Ga0066684_10216700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1244	Open in IMG/M
3300005179\|Ga0066684_10324138	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300005184\|Ga0066671_10800681	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005186\|Ga0066676_10699883	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300005294\|Ga0065705_11152794	Not Available	511	Open in IMG/M
3300005332\|Ga0066388_106672886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 2S1	581	Open in IMG/M
3300005332\|Ga0066388_108762922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	502	Open in IMG/M
3300005344\|Ga0070661_101383136	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300005364\|Ga0070673_100047115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3352	Open in IMG/M
3300005435\|Ga0070714_100903426	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300005436\|Ga0070713_100485980	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300005436\|Ga0070713_101014999	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300005436\|Ga0070713_101900328	Not Available	577	Open in IMG/M
3300005451\|Ga0066681_10150004	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300005537\|Ga0070730_10957213	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300005540\|Ga0066697_10111838	All Organisms → cellular organisms → Bacteria	1597	Open in IMG/M
3300005560\|Ga0066670_10136444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1420	Open in IMG/M
3300005713\|Ga0066905_100902253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	773	Open in IMG/M
3300005764\|Ga0066903_101202910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0182	1407	Open in IMG/M
3300005764\|Ga0066903_101424572	All Organisms → cellular organisms → Bacteria	1303	Open in IMG/M
3300005764\|Ga0066903_104526796	Not Available	741	Open in IMG/M
3300005902\|Ga0075273_10123418	Not Available	528	Open in IMG/M
3300005983\|Ga0081540_1036560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2616	Open in IMG/M
3300006047\|Ga0075024_100132231	Not Available	1122	Open in IMG/M
3300006047\|Ga0075024_100298723	Not Available	789	Open in IMG/M
3300006047\|Ga0075024_100298806	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300006047\|Ga0075024_100907002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	502	Open in IMG/M
3300006051\|Ga0075364_10326247	Not Available	1045	Open in IMG/M
3300006057\|Ga0075026_100457804	Not Available	727	Open in IMG/M
3300006059\|Ga0075017_100193900	All Organisms → cellular organisms → Bacteria	1466	Open in IMG/M
3300006059\|Ga0075017_100216185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1391	Open in IMG/M
3300006102\|Ga0075015_100067216	All Organisms → cellular organisms → Bacteria	1736	Open in IMG/M
3300006102\|Ga0075015_100316506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	862	Open in IMG/M
3300006102\|Ga0075015_100970460	Not Available	519	Open in IMG/M
3300006172\|Ga0075018_10114985	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300006172\|Ga0075018_10233416	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300006172\|Ga0075018_10326223	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300006172\|Ga0075018_10423930	All Organisms → cellular organisms → Bacteria → Proteobacteria	681	Open in IMG/M
3300006173\|Ga0070716_100871999	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300006174\|Ga0075014_100059362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1671	Open in IMG/M
3300006175\|Ga0070712_100225576	All Organisms → cellular organisms → Bacteria	1485	Open in IMG/M
3300006175\|Ga0070712_100553501	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300006354\|Ga0075021_10659308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	670	Open in IMG/M
3300006573\|Ga0074055_11585548	Not Available	516	Open in IMG/M
3300006795\|Ga0075520_1068075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1669	Open in IMG/M
3300006847\|Ga0075431_100315412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	1577	Open in IMG/M
3300006864\|Ga0066797_1271423	Not Available	592	Open in IMG/M
3300007258\|Ga0099793_10369704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 2S1	702	Open in IMG/M
3300007788\|Ga0099795_10449443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	593	Open in IMG/M
3300010038\|Ga0126315_11175491	Not Available	520	Open in IMG/M
3300010043\|Ga0126380_10156647	Not Available	1467	Open in IMG/M
3300010043\|Ga0126380_11189401	Not Available	656	Open in IMG/M
3300010047\|Ga0126382_11965863	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300010360\|Ga0126372_11020878	All Organisms → cellular organisms → Bacteria → Proteobacteria	840	Open in IMG/M
3300010375\|Ga0105239_11116065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	908	Open in IMG/M
3300010376\|Ga0126381_102185719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	796	Open in IMG/M
3300012683\|Ga0137398_10155615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1486	Open in IMG/M
3300012902\|Ga0157291_10264545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	579	Open in IMG/M
3300014165\|Ga0181523_10260804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	987	Open in IMG/M
3300014495\|Ga0182015_10148395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1595	Open in IMG/M
3300016341\|Ga0182035_11564054	Not Available	594	Open in IMG/M
3300016357\|Ga0182032_11963745	Not Available	513	Open in IMG/M
3300016422\|Ga0182039_12077134	Not Available	523	Open in IMG/M
3300016445\|Ga0182038_12027934	Not Available	521	Open in IMG/M
3300017970\|Ga0187783_10537267	Not Available	847	Open in IMG/M
3300018006\|Ga0187804_10296484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	704	Open in IMG/M
3300018044\|Ga0187890_10677169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	582	Open in IMG/M
3300018468\|Ga0066662_12324419	Not Available	563	Open in IMG/M
3300021170\|Ga0210400_10254238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1437	Open in IMG/M
3300021178\|Ga0210408_10386532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1115	Open in IMG/M
3300025549\|Ga0210094_1078585	Not Available	609	Open in IMG/M
3300025864\|Ga0209429_10346992	Not Available	558	Open in IMG/M
3300025899\|Ga0207642_10491146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	750	Open in IMG/M
3300025910\|Ga0207684_11605202	Not Available	527	Open in IMG/M
3300026325\|Ga0209152_10166474	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300027882\|Ga0209590_10200557	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300027894\|Ga0209068_10734559	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300028784\|Ga0307282_10588785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300028807\|Ga0307305_10428657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	596	Open in IMG/M
3300028819\|Ga0307296_10109530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1482	Open in IMG/M
3300028879\|Ga0302229_10159925	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300030007\|Ga0311338_10612683	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300030494\|Ga0310037_10115892	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300031344\|Ga0265316_10165778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1650	Open in IMG/M
3300031572\|Ga0318515_10783283	Not Available	503	Open in IMG/M
3300031744\|Ga0306918_11283744	All Organisms → cellular organisms → Bacteria → Proteobacteria	563	Open in IMG/M
3300031753\|Ga0307477_10367040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	989	Open in IMG/M
3300031753\|Ga0307477_10978483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	556	Open in IMG/M
3300031777\|Ga0318543_10492456	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300031890\|Ga0306925_12196641	Not Available	513	Open in IMG/M
3300031912\|Ga0306921_12152562	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300032059\|Ga0318533_10223491	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300032205\|Ga0307472_101318287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. M5C.F.Ca.IN.020.32.2.1	696	Open in IMG/M
3300033004\|Ga0335084_10027379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5821	Open in IMG/M
3300033158\|Ga0335077_10608278	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300033402\|Ga0326728_10394310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. L45	1187	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.60%
Host-Associated	Host-Associated	9.40%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.79%
Aquatic	Environmental → Aquatic	18.80%
Plants	Host-Associated → Plants	9.40%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.23%
Sediment	Environmental → Aquatic → Sediment	14.53%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.27%
Freshwater	Environmental → Aquatic → Freshwater	2.56%
Peat	Environmental → Terrestrial → Peat	2.56%
Marine	Environmental → Aquatic → Marine	1.71%
Roots	Host-Associated → Plants → Roots	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.15%
Loam	Environmental → Terrestrial → Soil → Loam	17.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	14.53%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.13%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.27%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.56%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.56%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.56%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.71%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	14.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.84%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.27%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.27%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.56%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.71%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.71%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.71%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	14.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.13%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.13%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	4.27%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.42%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.56%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.71%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.71%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.71%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.71%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.85%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.85%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.85%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.85%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental	Open in IMG/M
3300000912	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001177	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2	Environmental	Open in IMG/M
3300001396	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012	Environmental	Open in IMG/M
3300001407	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012	Environmental	Open in IMG/M
3300001417	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012	Environmental	Open in IMG/M
3300002073	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005902	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_102	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300025549	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025864	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_101893422	3300000567	Peatlands Soil	PLIGAFLLWAIMDISAHAISLADGLNRAKWVTSVRKRREDRSSISSHPLADLGG*
KanNP_Total_noBrdU_T14TCDRAFT_10056041	3300000596	Soil	LELDGLLAIMDISARAISLADRPQRAIWVTSVRTRREDRTSISSHPLADLGR*
AF_2010_repII_A10DRAFT_10114701	3300000816	Forest Soil	IMDISAPAISLAVRPQWAIWVTSVRMRREDRSSIRFHPLADLGG*
JGI12032J12867_10034251	3300000912	Forest Soil	LEHVLRAIMDISAHAISLAEGLNGAIRVTSVRMRREDRSSIIVHPLADSGG*
JGI10216J12902_1017056241	3300000956	Soil	LELGGLLAIMENSALAISLADRPQRAIWVTSVRMRR
JGI12634J13548_10020271	3300001177	Forest Soil	RSLLELFLLPTIMDISARAVSLADRPQRAIRVTRVRMRREDRSSISTYPLADLGG*
JGI20175J14863_10240692	3300001396	Arctic Peat Soil	RVVLRAIMDISARAISLAEGLERAIWVISXRMRREDRTSISFHPLADLGR*
JGI20192J14887_10015591	3300001407	Arctic Peat Soil	ISARAFSLADRPQRAIRVTSVRMRREDRSSISSYPLADLGG*
JGI20196J14858_10151421	3300001417	Arctic Peat Soil	IRSLIGAVLLRTIMDISARAVSLSDRPQWASWVTSVRMRREDRSSISSHPLADLGG*
JGI24745J21846_10178172	3300002073	Corn, Switchgrass And Miscanthus Rhizosphere	VLHQCMRSLIGVGLLQTIMDISARAFSLADRPQRAIWVTSVRMRREDRSSISSHPLADLGR*
C688J35102_1205251181	3300002568	Soil	RTIMDISARAFSLPDRPQRVIWVTSVRKRREDRSSISSYPLADLGE*
JGI25404J52841_100191082	3300003659	Tabebuia Heterophylla Rhizosphere	LEHVLLLAIMGISARAISLADRPQRAIRVTSVRKRREDRTSISSHPLADLGG*
Ga0055437_100726112	3300004009	Natural And Restored Wetlands	SAHAISLPARPQWAIWVTSVRMRREDRTSIPIYPLADLGG*
Ga0063454_1006524342	3300004081	Soil	VLRTIMDISARAFSLPDRPQRVIWVTSVRKRREDRSSISSYPLADLGE*
Ga0063356_1010615113	3300004463	Arabidopsis Thaliana Rhizosphere	MDISAPAASLADRPQRAIWVTSVRKRREDRTSISSQSLADLGMTG
Ga0066869_101092862	3300005165	Soil	MRSLIGVGLLQTIMDISARAFSLADRPQRAIWVTSVRMRREDRSSISSHPLADLGR*
Ga0066673_100576602	3300005175	Soil	MDISAQTSSFAERPQRAMWVTSVRMRWEDQTSISSHLLADLGG*
Ga0066673_103600521	3300005175	Soil	VLRAIMDISARAISLAERPLGAIWVTSVRTRREDRTSISCYLLADLGG*
Ga0066684_102167001	3300005179	Soil	MDISAQASSLAERPQRAMWVTSVRMRWEDQTSISSHLLADLGG*
Ga0066684_103241383	3300005179	Soil	LERVVLRAIMDISAPAISLADRPQRAIRVTSVRMRREDRSSISSRPLADLGR*
Ga0066671_108006812	3300005184	Soil	LEPFVLRAIMGISARATSLAEGPQGAIGVTSVRMRREDRSSISF*
Ga0066676_106998833	3300005186	Soil	MLRAIMDISARAISLADRPQRAIRVTSVRVRREDRSSISFHPLADLGG*
Ga0065705_111527941	3300005294	Switchgrass Rhizosphere	MLLAIMENSARAISLADRPQRAIRVTSVRTRREDPTSISSHPLADLGR*
Ga0066388_1066728861	3300005332	Tropical Forest Soil	MLLAIMDISARASSLADRPQRAMRVTSVRMRREDRTSISSHPLADLGR*
Ga0066388_1087629222	3300005332	Tropical Forest Soil	MDISARAISLGEGLNQAIWVTSVRIRREDRSSIVVSNPLADLGRRESGYV
Ga0070661_1013831361	3300005344	Corn Rhizosphere	MDISAPAASLADRPQWAIWVTSVRMRREDRTSISSQSLADL
Ga0070673_1000471155	3300005364	Switchgrass Rhizosphere	MDISARAFSLADRPQRAIWVTSVRMRREDRSSISSHPLADLGR*
Ga0070714_1009034262	3300005435	Agricultural Soil	LEPFVPRAIMDISAPAISLAVRPQWAIWVTSVRMRREDRSSISFYPLADLGR*
Ga0070713_1004859803	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LERVVLRAIMDISARAISLTDRPQRAIWVTSVRMRREDRTTISSHPLADL
Ga0070713_1010149992	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	PFVPRAIMDISAPAISLAVRPQWAIWVTSVRMRREDRSSISFYPLADLGR*
Ga0070713_1019003282	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	IGVVVLLAIMDISARAVSLPDRPQRAIRVTSFRMRREDRTSISSHPLADLGR*
Ga0066681_101500042	3300005451	Soil	VLRAIMDISARAISLAVRPQRAIWVTSVRKRREDRSSISFSFFADLGR*
Ga0070730_109572132	3300005537	Surface Soil	LILERVMLRATMDISAHAISLRPGLDRANRVTSIRTHREDRSSISSYPLADLVGG*
Ga0066697_101118381	3300005540	Soil	MDISARAISLAVRPQRAIWVTSVRKRREDRSSISSYPLADLGE*
Ga0066670_101364441	3300005560	Soil	VLRAIMDISARAISLADRPQRAIRVTSVRMRREDRSSISSRPLADLGR*
Ga0066905_1009022532	3300005713	Tropical Forest Soil	VLRAIMDISARATSLADRPQRAIRVTSVRMRREDRSSISFYPLADLGR*
Ga0066903_1012029104	3300005764	Tropical Forest Soil	VLQAIMDISARAISLAVRPQWAIGVTRVRMRREDRSSISF
Ga0066903_1014245722	3300005764	Tropical Forest Soil	MLRAIMDISARAISLAEGLERAIGVTSVRMRREDRSTIVVHPLADLGR*
Ga0066903_1045267962	3300005764	Tropical Forest Soil	LELFVLRAIMGISARAISLADRPQRAMWVTRVRMRR
Ga0075273_101234182	3300005902	Rice Paddy Soil	IGAVLPATMDISARAISLPDRPHRAIWVTSVRTRREDRSSISSHPLADLGRN*
Ga0081540_10365603	3300005983	Tabebuia Heterophylla Rhizosphere	LELDLLLAIMDISARAISLPDRSQRTIWVTSARMRREDRASTSYPLADLGKYSIGRF*
Ga0075024_1001322311	3300006047	Watersheds	VLRAIMDISARAISLADRPQRAIRVTSVRMRREDRT
Ga0075024_1002987231	3300006047	Watersheds	MLRATMDISAHAISLTPGLDRANRATSIRTHREDRSSISSYPLADLVGG*
Ga0075024_1002988062	3300006047	Watersheds	LERFVLLAIMDISAPASSLSEDLNWASRVTSVRMRREDRTSISSHP
Ga0075024_1009070021	3300006047	Watersheds	MLRAIMDISARATSLTDRPQWAMWVTSFRMRREDRTSISSYPLADLGG*
Ga0075364_103262472	3300006051	Populus Endosphere	SLLAIMDISAGAISLAERPDRAIWVTSVRTRREDRISISSRSLADLGR*
Ga0075026_1004578042	3300006057	Watersheds	MDISAQASSLAERPQRTIWVTSVRMRREDRTSISSHLLADLGG*
Ga0075017_1001939001	3300006059	Watersheds	LERFVLLATMDISARAVSLADRPQWAIWVTSVRMRREDR
Ga0075017_1002161851	3300006059	Watersheds	SLLERVVLRAIMDISARAISLADRPQRAIRVTSVRMRREDRTSISSHPLADLGG*
Ga0075015_1000672162	3300006102	Watersheds	LERFVLLATMDISARAVSLADRPQWAIWVTSVRMRRE
Ga0075015_1003165062	3300006102	Watersheds	VLLATMDISARAVSLADRPQWAIWVTSVRMRREDRSSISFHLLADLG
Ga0075015_1009704602	3300006102	Watersheds	LAERPQRTIWVTSVRMRREDRTSISFHPLADLGG*
Ga0075018_101149851	3300006172	Watersheds	VLLAIMDISARAISLPDRPQRAIRVTSVRRRREDRTSISSHP
Ga0075018_102334161	3300006172	Watersheds	AIMDISARAFSLADRPQRAIRVTSVRMRREDRSSISSHPLADLGG*
Ga0075018_103262232	3300006172	Watersheds	MERVVLRAIMDISARAISLADRPQRAIRVTSVRMRREDRTSISSHSLADLGR*
Ga0075018_104239301	3300006172	Watersheds	VLTTPLCLEPFVPRAIMDISAPAISLAVRPQWAIWVTSVRMRREDRSSISF
Ga0070716_1008719992	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LERVVLRAIMDISARAISLTDRPQRAIWVTSVRMRREDRTSISSHPLADLGR*
Ga0075014_1000593623	3300006174	Watersheds	PLIGRVVLRAIMDISAPAISLPDGLERAIWVTSVRMRREDRTSISS*
Ga0070712_1002255762	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GLCLEPFVPRAIMDISAPAISLAVRPQWAIWVTSVRMRREDRSSISFYPLADLGR*
Ga0070712_1005535011	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MLRATMDISARTSSLPERPQRTIWVTSVRMRREDRTSVSSHPLADLGG*
Ga0075021_106593081	3300006354	Watersheds	VLRAIMDISARAISLADRPQRAIWVTSVRMRREDR
Ga0074055_115855482	3300006573	Soil	LLAIMGISAPAILLAERPRRAIWVTSVRKRREDRISISSRSLADLGN*
Ga0075520_10680751	3300006795	Arctic Peat Soil	LRTIMDISARAFSLADRPQRAIRVTSVRMRREDRSSISSYPLADLGG*
Ga0075431_1003154122	3300006847	Populus Rhizosphere	MLRAIMDISARAISLPDRRQRANWVTSVRMRREDRSSISSHPLADLGK*
Ga0066797_12714232	3300006864	Soil	DISARAVSLSDRPQWASWVTSVRMRREDRSSISTYPLADLGG*
Ga0099793_103697041	3300007258	Vadose Zone Soil	VLLAIMGSSAHAISLAGRPQRAIWVTSSHMRREDRSSIS
Ga0099795_104494432	3300007788	Vadose Zone Soil	MDISARAVSLSDRPQWASWVTSVRMRREDRSSISSHPLADL
Ga0126315_111754911	3300010038	Serpentine Soil	MDISARAVSLADRPQRAIRVTSVRMRREDRTSISSQSLADLGMT
Ga0126380_101566471	3300010043	Tropical Forest Soil	VLRAIMDISARAFSLADRPQAGAIRVTRVRMRREDRSSISFHPLADLGRKTGTMSSLPPD
Ga0126380_111894011	3300010043	Tropical Forest Soil	MGLPAIMENSAPASSLADRPQRAIRVTRVRMRREDRTSISSHPLADLGR
Ga0126382_119658631	3300010047	Tropical Forest Soil	LLRATMGISARATSLADRPEQAIRVTSARTRREDRSSISFESLADLGVSVA
Ga0126372_110208781	3300010360	Tropical Forest Soil	VLRAIMDTSARAISLAVRPQRAIWVTSVRMRREDRSSISFSS
Ga0126378_120146351	3300010361	Tropical Forest Soil	MDISAQASSLAERPQRAIRVTSVRVRREDRTSILS
Ga0105239_111160651	3300010375	Corn Rhizosphere	MRSLIGVGLLQTIMDISARAFSLADRPQRAIWVTSVRMRREDRSSISSHP
Ga0126381_1021857191	3300010376	Tropical Forest Soil	VLRAIMDISAHAFFLADRPQAGAIWVTRVRMRREDRSSISFHP
Ga0137398_101556153	3300012683	Vadose Zone Soil	VLRTIMDISARAFSLADRPQRAIWVTSVRMRREDRSSISTYPLA
Ga0157291_102645451	3300012902	Soil	MDISAPVASLADRPQRAIWVTSVRKRREDRTSISSQSLADLGKTGIAVPVINY
Ga0181523_102608041	3300014165	Bog	VLLATMDISAHAVSLAVRPRWAIGVTSVRMRREDRSSISFH
Ga0182015_101483953	3300014495	Palsa	LRAIMDISARAFSLADRPQRAIRVTSVRKRREDRTSISTYPLADLGG*
Ga0182035_115640541	3300016341	Soil	MDISAQASSLADRPQRTIRVTSVRMRREDRTSISSHLLADLG
Ga0182032_119637451	3300016357	Soil	MDISARGNSLTDRPQRAIWVTSVRMRREDRTSISCDDALVFF
Ga0182039_120771341	3300016422	Soil	VLRAIMGISARAISLPERPQRAVGVISARMRREDQSSISF
Ga0182038_120279341	3300016445	Soil	VLRAIMDISALAFSLADRPQRAIRVTRVRKRRDDR
Ga0187783_105372671	3300017970	Tropical Peatland	MGISALANSLGERPQRTIWVTSVRMRREDRTSIPSHPFADLGGYASEA
Ga0187804_102964842	3300018006	Freshwater Sediment	MDISAQANSLVERPQRTIWVTSVRVRREDRTSISFHPLADLGRQL
Ga0187890_106771692	3300018044	Peatland	MLLASMHISAHAVSLADRPQWAIRVTSVRMRREDRSSISFHLLADLGGE
Ga0066662_123244191	3300018468	Grasslands Soil	VLRAIMGISARATSLAEGPQGAIGVTSVRMRREDRSSIS
Ga0210400_102542381	3300021170	Soil	GLCVERVVLRAIMDISARAISLTDRPQPAIWVTSVRMRREDRTSISSHPLADLGR
Ga0210408_103865324	3300021178	Soil	VLLATMDISAHAISLADRPQWAIRVTSVRTCREDRSSISFYPL
Ga0210094_10785851	3300025549	Natural And Restored Wetlands	MLLAIMDISAHAISLPARPQWAIWVTSVRMRREDRTSIPIH
Ga0209429_103469921	3300025864	Arctic Peat Soil	MGISARAISLADRPQRAIWVTSVRMRREDRSSISSYLLA
Ga0207642_104911461	3300025899	Miscanthus Rhizosphere	MRSLIGVGLLQTIMDISARAFSLADRPQRAIWVTSVRMRREDRSSISSHPLADLGR
Ga0207684_116052021	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	ISLADGPQRAIWVTSVRVRREDRSSISSYPLADLGG
Ga0209152_101664742	3300026325	Soil	KQTFLKSVGMSLELVVLRTIMDISARAFSLPDRPQRVIWVTSVRKRREDRSSISSYPLADLGE
Ga0209590_102005571	3300027882	Vadose Zone Soil	ERFVLLAIMDISARAISLADRPHWAIRVTSVRMRREDRSSISSHPLADLGR
Ga0209068_107345592	3300027894	Watersheds	MLLATMDISARAVSLADRPQWAIWVTSVRMRREDR
Ga0307282_105887851	3300028784	Soil	VLRTIMDISARAFSLPDRPQRVIWVTSVRKRREDRSS
Ga0307305_104286572	3300028807	Soil	VLRAIMDISARAISLTDRPQRAIWVTSVRMRREDRT
Ga0307296_101095301	3300028819	Soil	VLRAIMDISARAISLTDRPQRAIWVTSVRMRREDRTSISSHPLAD
Ga0302229_101599251	3300028879	Palsa	RAIMDISARAFSLADRPQRAIRVTSVRKRREDRTSISTYPLADLGG
Ga0311338_106126831	3300030007	Palsa	LRTIMDISARATSLADRPQRAIRVTSVRMRREDRSSISTYPLADLGG
Ga0310037_101158921	3300030494	Peatlands Soil	EHVVLRAIMDISARAISLADRPQRAIRVTSVRMRREDRTSISSHPLADLGR
Ga0265316_101657784	3300031344	Rhizosphere	LLRTIMDISARAISLTDRPQRAIWVTSVRTRSEDR
Ga0318515_107832832	3300031572	Soil	VLRAIMGISARAISLPERPQRAVGVISARMRREDQSSISFLI
Ga0306918_112837442	3300031744	Soil	MLRAIMGISARAISLAVRPQRAVGVTSARMRREDRSS
Ga0307477_103670401	3300031753	Hardwood Forest Soil	MLLAIMDISARATSLAERSQLDHYRVTSVRMRREDRTSISSHLS
Ga0307477_109784831	3300031753	Hardwood Forest Soil	MDISAQASSLAERPQRTVWVTSVRMRREDRTSISSHPLADLGGILFSN
Ga0318509_101669602	3300031768	Soil	LKLRAVMDISAQASSLAERPQRAIRVTSVRVRREDRTSIMS
Ga0318543_104924561	3300031777	Soil	VLRAIMDISARAISLADRPQGAIWVTGVRMRREYRSSIS
Ga0306925_121966411	3300031890	Soil	VPLAIMDISAPAISLAVRPQWAIWVTSVRMRREDRSS
Ga0318520_101806192	3300031897	Soil	LELTLRAVMDISAQASSLAERPQRAIRVTSVRVRREDRTSILS
Ga0306921_121525621	3300031912	Soil	VLRAIMGISARATSLPERPQGAIWVTSVRMHREDRSSISFL
Ga0318533_102234911	3300032059	Soil	LKLRAVMDISAQAISLPERPQRTIWVTSFRMRREDRTSISSYPLADLGG
Ga0307472_1013182872	3300032205	Hardwood Forest Soil	VLLAIMDISAHAISLPNRPQRAIWVTSARMRQKDRT
Ga0335084_100273791	3300033004	Soil	VLLAIMDISARASSLPDRPQRAIWVTSVRMRREDPTSISSH
Ga0335077_106082781	3300033158	Soil	RAIMDISAHAISLADRPQRAKGVTSARTRREDRLSISV
Ga0326728_103943101	3300033402	Peat Soil	VLLATMDISARAVSLADRPQWAIRVTRVRMRREDRSSISFHLL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077735

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences