NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F077703

Metagenome / Metatranscriptome Family F077703

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F077703
Family Type Metagenome / Metatranscriptome
Number of Sequences 117
Average Sequence Length 112 residues
Representative Sequence NVRGLINQRSGQRLAAQSAYICAFLCADFYGVQAWWLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISGGLKASFRQ
Number of Associated Samples 110
Number of Associated Scaffolds 117

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.71 %
% of genes near scaffold ends (potentially truncated) 87.18 %
% of genes from short scaffolds (< 2000 bps) 89.74 %
Associated GOLD sequencing projects 107
AlphaFold2 3D model prediction Yes
3D model pTM-score0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(15.385 % of family members)
Environment Ontology (ENVO) Unclassified
(22.222 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(46.154 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160.162.164
12222005928
2F14TB_1024970532
3Ga0063455_1002369972
4Ga0062591_1016133981
5Ga0066676_109623582
6Ga0070683_1002159074
7Ga0070670_1003602181
8Ga0070675_1014420072
9Ga0008090_155593742
10Ga0070713_1022260622
11Ga0070685_106737652
12Ga0066705_100048777
13Ga0066905_1021870431
14Ga0066903_1046995111
15Ga0066903_1062300612
16Ga0066903_1073219292
17Ga0081455_103037442
18Ga0066696_109017252
19Ga0066652_1008939581
20Ga0075018_107850571
21Ga0070712_1011500561
22Ga0075431_1021697631
23Ga0075433_113808251
24Ga0079219_102254392
25Ga0111539_115156301
26Ga0105245_123889592
27Ga0066709_1037415691
28Ga0111538_109926272
29Ga0105241_112455391
30Ga0126374_105990772
31Ga0105069_10474791
32Ga0126380_106273332
33Ga0126382_103412362
34Ga0126373_103793512
35Ga0134086_100993952
36Ga0134080_103557782
37Ga0134062_107386801
38Ga0126370_103828342
39Ga0126372_108103611
40Ga0126372_123941152
41Ga0126378_107099831
42Ga0126378_119032092
43Ga0134128_125879842
44Ga0126381_1001014331
45Ga0137364_114538171
46Ga0137382_109887132
47Ga0137381_101610921
48Ga0137378_101740701
49Ga0137378_106139451
50Ga0137398_100574714
51Ga0137398_101739272
52Ga0157287_10401732
53Ga0157298_101283822
54Ga0157302_100148231
55Ga0137396_101459644
56Ga0137404_111028791
57Ga0164299_115394341
58Ga0164301_118164941
59Ga0164302_114948362
60Ga0164304_107236791
61Ga0164307_109955522
62Ga0157374_120102312
63Ga0163163_114111982
64Ga0157376_103133492
65Ga0137414_11712204
66Ga0137411_12391191
67Ga0132257_1016018032
68Ga0182033_100311561
69Ga0184604_100912411
70Ga0184608_103452441
71Ga0184638_12902431
72Ga0184623_100324154
73Ga0184624_103090292
74Ga0193693_10230492
75Ga0193730_11720261
76Ga0193755_11195311
77Ga0193750_10632282
78Ga0126371_102180181
79Ga0207663_105915191
80Ga0207700_117152202
81Ga0207664_114520711
82Ga0207701_101147541
83Ga0209027_12011931
84Ga0209240_11352352
85Ga0209375_12248601
86Ga0257156_11256262
87Ga0209807_10637461
88Ga0209474_106358621
89Ga0207509_1048731
90Ga0209465_101278571
91Ga0209590_100518641
92Ga0137415_100121402
93Ga0307320_102451181
94Ga0307299_103734942
95Ga0307281_103882632
96Ga0307312_110074092
97Ga0307278_102534731
98Ga0075403_112798412
99Ga0075394_117812022
100Ga0310888_101355392
101Ga0310887_106882112
102Ga0310887_107434431
103Ga0318574_107830061
104Ga0310813_113740081
105Ga0318547_102567441
106Ga0310917_108919911
107Ga0306919_103773202
108Ga0310912_109606422
109Ga0310885_103510011
110Ga0308176_118871641
111Ga0310890_112710892
112Ga0307470_115972102
113Ga0307471_1018846872
114Ga0307472_1021745041
115Ga0310896_101055651
116Ga0306920_1009081201
117Ga0310914_100811725
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 54.68%    β-sheet: 0.00%    Coil/Unstructured: 45.32%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090100110NVRGLINQRSGQRLAAQSAYICAFLCADFYGVQAWWLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISGGLKASFRQSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.29
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
100.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater Sediment
Watersheds
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Grass Soil
Soil
Agricultural Soil
Soil
Grasslands Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Soil
Hardwood Forest Soil
Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Agricultural Soil
Groundwater Sand
Arabidopsis Rhizosphere
Tabebuia Heterophylla Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Tropical Rainforest Soil
4.3%15.4%11.1%9.4%6.0%6.8%6.0%4.3%3.4%3.4%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
22220059282209111022Grass SoilVETSLYRFDVRTGHGENVRSLINQRSGQRLAAQSADICAFLCADFYGVQAWRLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVACADEEDVFHGSERAANAFIKLEANLSKSISDGPRASFRQ
F14TB_10249705323300001431SoilMAYVCAFLCTDFDRVQACRLAPNSVHASRCHFDVLPVANQAAKEPFCDRAPTNIACADEEDVFHGSERAASAPLKLEANLCKSISGGPRASFRQ*
Ga0063455_10023699723300004153SoilSSKRLAPQAADIGAFRRADLYRVQAWRLAANRVHASRCDFDVLPVADQPTEKPFGDRTPTNVACADEKDIFHGSERAANAFIKLKANLSKSICVAPRASFRQ*
Ga0062591_10161339813300004643SoilLINERSSQRLAAQTADIYAFRCADFHGIQAGGLAAHRVHAGRCDFDVLPVASQSAKKPFCYRAPTNIACADEENAFHGSERAAKAFIKLEANLSKSILVAPRAWFYR*
Ga0066676_1096235823300005186SoilGQRLAAQSAYICAFLCADFYGVQAWRLAANRVHAGGCDFDVLPVASHAAKEPFRDRAATNIACAYEEDVFHGSERAASAFVNLEANLSKSISDGPRASFRQ*
Ga0070683_10021590743300005329Corn RhizosphereGLINKRSGQWLAPQIADICAFVCADLYGVHARRLATNRMHPRGCDFDLLPVASQTAKEPFGDRAPANIACADEEDVFHGLERAASAFMKLEANMTKSISGAQQALFRY*
Ga0070670_10036021813300005331Switchgrass RhizosphereVRGLINKRSGQWLAPQIADICAFVCADLYGVHARRLATNRMHPCGCDFDLLPVASQTAKEPFGDRAPANIACADEEDVFHGFERAASAFMKLEANMTKSISGAQQALFRY*
Ga0070675_10144200723300005354Miscanthus RhizosphereRFDVRTGHGENVRGLINKRSGQWLAPQIADICAFVCADLYGVHARRLATNRMHPCGCDFDLLPVASQTAKEPFGDRAPANIACADEEDVFHGFERAASAFMKLEANMTKSISGAQQASFRH*
Ga0008090_1555937423300005363Tropical Rainforest SoilNTSQVAYICAFLCADFHGVQAWRLATNCVHTGGCDFDVLPVASQAAKKPFCDRAPTNVACADEEDAFHWSERATSAFIKVEADLSKSISDGPRASFHQ*
Ga0070713_10222606223300005436Corn, Switchgrass And Miscanthus RhizosphereQRSGQRLAAQSADISAFGCADFYGVQAWWLAANRVYAGGCDFDVLPVANQAAKKPFRDGAPTNVACADKEDVFHGQNAQPTRLSKLEANLSKSISDGPRASFRQ*
Ga0070685_1067376523300005466Switchgrass RhizosphereLYRFDVRTGHGENVRSLINQRAGQRLAAQGVYICAFVCADFYGVQAWRLAANRVHAGRCDFDVLPVASNAAKKPLCDRAPTNVSCADEEDVFHGSQRAANAFMKLEANLSKSISADLRASFGQ*
Ga0066705_1000487773300005569SoilSGQRLAAQVAYVCAFLCADFHRIHAWRLTTNRVHAGRCDFNVLPVASQAAKKPFCDRAPTNVACADEEDVFHGSQRAASAFLNLKANLSKSISDGPRASFRE*
Ga0066905_10218704313300005713Tropical Forest SoilLWKQCLYRFNVRTGHGENVCSLIHQRSRQRLATEIADVRAVLRADFYGVNAWWLAPNRMHAGGYDFDVLPVASQAAKKPFCNRAPTNIACADEEDVFHGSERAAGAFIKLKANLSKSISGDRRASFRQRFVASRTGALRLL*
Ga0066903_10469951113300005764Tropical Forest SoilFFRTLWKQCLYRFEVRTGHGEDVCGLIDQCASQRLAAESADVCVFLRANFYGVHAWGLAANCVHASGCDFDVLPVAGQAPKKPFCDRAPTNIPCADKEDVFHKSERAARAFIKLKANLFKSISGNLPRWFRQ*
Ga0066903_10623006123300005764Tropical Forest SoilLYRFDVRTGHGENVRSLINQRSGQRLAAQIADICAFSCADFHGVEAWRLATNSVDAGRCDFDILPVANQAAKKPFRDRAPTNVACADEEDVFHGSERAANAFTNLEANLSKSIFSVNEAQFRRNVSFE*
Ga0066903_10732192923300005764Tropical Forest SoilGVQAWRLAPNRVDTSRCNFDVLPVASQAAKKPFRDRAPTNVTCADEEDVFHGSERAANAFIKLEAKLYKSISGDRRTSFRQRFVASRTGALRVL*
Ga0081455_1030374423300005937Tabebuia Heterophylla RhizosphereERFFRTLWKQSLYRFDVRAGHGKNVRGLINQPPSQRLAAQIADICALLCTDFYGVHARGLATNGVHTRRCDFDVLSIAAQAPKKPFRYGASTNVACADEEDVFHDWERAASAFTKLEANRSKSISGGPMESSYQ*
Ga0066696_1090172523300006032SoilRSGQRLAAQSAYICAFLCAHFYGVQAWRLAANRVHAGGRDFDVLPVASHAAKKPFRDRAPTNVACADEEDVFHGSERAANAFIKLEANLSKSISDGPRASFRQ*
Ga0066652_10089395813300006046SoilRFFRTLWKQCLYRFDVRTGHGENVRSLINQRSGQRLAAQRAYICAFLCAHFYGVQAWRLAANRVHAGGRDFDVLPVASHAAKKPFRDRAPTNVACADEEDVFHGSERAANAFIKLEANLSKSISDGPTASFRQ*
Ga0075018_1078505713300006172WatershedsAAQGAYICAFLCADFYGVQAWRLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVACADEEDIFHGSERAANAFIKLEANLSKSISDSPRASFHQ*
Ga0070712_10115005613300006175Corn, Switchgrass And Miscanthus RhizosphereRSGQRLAAQSAYICAFLCADFYGVQAWWLSANRVHAGRCDIDVLAVASQAAKKPFRDRASTNVACADEEDVFHGSERAANALIKLKANLFKSISDGPRASSRQ*
Ga0075431_10216976313300006847Populus RhizosphereRALWKQCLYCFDVRAGHRKNVRGLIDQRSRQGLAAEIANVCVFLRADFNGIHARWLAADRVHASGCDFDVLAVASQSSKKPFCDGAPTNIACADEEDVFHKSQRAADAFIKLKANVFKSISDGPRASFRQ*
Ga0075433_1138082513300006852Populus RhizosphereKIAYVCAFLRADFDGVQARRLAPNRVDTSRCNFDVLPVASQAAKKPFCNRAPTNIACADEEDVFHGSERAAGAFIKLKANLSKSISGDRRASFRQRFVASRTGALQLL*
Ga0079219_1022543923300006954Agricultural SoilMAYVCAFLCADFDGVQAWRLAPNRVDTSRCNLDVLPVASQAAKKPFCNRAPTNIACADEEDVFLGSERAAGAFIKLKANPSK
Ga0111539_1151563013300009094Populus RhizosphereFDVRAGHRKNVRGLIDQRSRQGLAAEIANVCVFLRADFNGIHARWLAADRMHASGCDFDVLAVASQSSKKPFCDGAPTNIACADEEDVFHKSQRAADAFIKLKANVFKSISDGPRASFRQ
Ga0105245_1238895923300009098Miscanthus RhizosphereLYRFDVRTGHGENMCGLINKRSGQGLAPQIADICSLVCADLYGVHARRLATNRMHPRGCDFDLLPVASQTAKEPFGDRAPANIACADEEDVFHGFERAASAFMKLEANMTKSISGAQQASFRH*
Ga0066709_10374156913300009137Grasslands SoilNVRGLINQRSGQRLAAQSAYICAFLCADFYGVQAWWLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISGGLKASFRQ*
Ga0111538_1099262723300009156Populus RhizosphereQCLYRFDVRPGHGENMCGLINKRSGQGLAPQIADICAFVCTDLYGVHARRLATNRMHPCGCDFDLLPVASQTAKEPFGDRAPANIACADEEDVFHGFERAASAFMKLEANMTKSISGAQQASFRH*
Ga0105241_1124553913300009174Corn RhizosphereNVRSLINQRAGQRLAAQGAYICAFLCADFYGVQAWWLAANRVYASRCDFDVLPVASQAAKKPFRDRASTNVACADEEDVFHGSERAANAFMKLEANLSKSISVA*
Ga0126374_1059907723300009792Tropical Forest SoilFLCADFDGVQAWRLAPNRVDTSRCNFDVLPVASQAAKKPFCNRAPTNIACADEEDVFHGSERAAGAFIKLKANLSKSISGDRRASFGQRFVASRTGALRLLWAPFYRFSANER*
Ga0105069_104747913300009800Groundwater SandSQRLAPQIADICAFLCAHFYGVQAWRLAANRVHASRCDFDVLPVASHAAKKAFRDRAPTNVACADEEDVFHGSERAANAFIKLEANLSKSISDGPRASFRQ*
Ga0126380_1062733323300010043Tropical Forest SoilRTLWKQCLYRFDVGTGHGENVCGLIDQCPGQRLATQTADICAFLCADLYSIKAWGLATNSVHSGRCDFDVLPVASQAAKQPFGDRTPTNVACADEEDIFHGSEGAAGAFSQPRSEAGQVNFQG*
Ga0126382_1034123623300010047Tropical Forest SoilGLINQRSRQRLAAQIADVCAFLRADFYGVHAWWLATNCVHAGGCDFDVLPVASQAAKKPFCNRAPTNIACADEEDVFHGSERAASAFIKLEVNPSKSISDRQRALFHQ*
Ga0126373_1037935123300010048Tropical Forest SoilLAAQIAYVCVFLSAHFNGVQAGRLAPNRVYAGGCNFYVLSVANQAAEKAFCDGAPANVACADEKDAFHGSERAASAFTKLEANLFKSISDGTGAPSCQ*
Ga0134086_1009939523300010323Grasslands SoilVRTGHGENVRSLINQRSGQRLAAQSAYICAFFCAHFYGVQAWRLAANRVHAGGRDFDVLPVASHAAKKPFRDRAPTNVACADEEDVFHGSERAANAFIKLEANLSKSISDGPTASFRQ*
Ga0134080_1035577823300010333Grasslands SoilQVAYVCAFLCADFHRIHAWRLTTNRMHAGRRDFDVLSVASQAAKKPFCDRAPTNVACADEEDVFHWSQRAASAFLNLKANLSKSISDGPTASFHE*
Ga0134062_1073868013300010337Grasslands SoilFFRTLWKQCLYRFEVRTGHGENVRGLINQRTGQRLAAQSAYICAFLCAHFYGVQAWRLAANRVHAGGRDFDVLPVASHAAKKPFRDRAPTNVACADEEDVFHGSERAANAFIKLEANLSKSISDGPRTPVRQ*
Ga0126370_1038283423300010358Tropical Forest SoilVRTGHGENVRSLVNQRSSQRLAAKIAYVCAFLCTDFDGVQAWRLAPNRVDTSRCNFDVLPVASQAAKKPFRDRAPTNVTCADEEDVFHGSERAANAFIKLEAKLYKSISGDRRTSFRQRFVASRTGALRVL*
Ga0126372_1081036113300010360Tropical Forest SoilVRTGHGENVRSLINQRSSQRLAAKIAYVCAFLCTDFDGVQAWRLAPNRVDTSRCNFDVLPVASQAAKKPFRDRAPTNVACADEEDVFHGSERAAGAFIKLKANLSKSISGD
Ga0126372_1239411523300010360Tropical Forest SoilYRFDVRTGHGENVRSLINQRSGQRLAAQIADICAFSCADFHGVEAWRLATNSVDAGRCDFDILPVANQAAKKPFRDRAPTNVACADEEDVFHGSDRAANAFPNLEANLSKSIFSVNEAQFRRNVSVE*
Ga0126378_1070998313300010361Tropical Forest SoilDVRSGHCEDVRGLINQPSAQRLAAQIANICAFLCADFYGIQAWRLTADRVHSGRRDFDVLPVASQVAKKPLCNRAPTNIACADEEDAFHGSERAAGAFIKLKANLSKSISGDRRASFRQ*
Ga0126378_1190320923300010361Tropical Forest SoilQRLYRFDVRTGHGENVRSLINQRSSQRLAAKIAYVCAFLGADFDGVQAWRLAPNRVDTSRCNFDVLPVASQAAKKPFRDRAPTNVTCADEEDVFHGSERAANAFIKLEAKLYKSISGDRRTSFRQRFVASRTGALRVL*
Ga0134128_1258798423300010373Terrestrial SoilLYRFDVRTGHCENVRSLVNQRSSQRLAAKIAYVCAFLRADFDGVQAWRLAPNRVDTSRCNFDVLPVASQAAKKPFCNRAPTNIACADEEDVFHGSERAAGAFIKLKANLSKSISGDRRASFRQRFVASRTGALQLL*
Ga0126381_10010143313300010376Tropical Forest SoilDFDGVQAWRLAPNRVDTSRCNFDVLPVASQAAKKPFRDRAPTNVTCADEEDVFHGSERAANAFIKLEAKLYKSISGDRRTSFRQRFVASRTGALRVL*
Ga0137364_1145381713300012198Vadose Zone SoilMRTGHGENVRGLINQRTGQRLAAQSAYICAFLCADFHGVQAWRLAANRMHAGRCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISGGLKASFR
Ga0137382_1098871323300012200Vadose Zone SoilLYRFEVRARHGENVRGLVNQRAGQRLAAQSAYICAFLCADFYGVQTWRLAANRVHASRCDFDVLPVASHAAKKPFRDRAPTNVSCADKEDVFHGSERAANAFIKLEANLSKSISGGLKASFRQ*
Ga0137381_1016109213300012207Vadose Zone SoilAYICAFLCAHFYGVQAWRLAANRVHAGRCDFDVLPVASHAAKKPFRDRAATNIACAYEEDVFHGSEGAANAFIKLEANLFKSISDGPRASFRQ*
Ga0137378_1017407013300012210Vadose Zone SoilTLWKQCLYRFEVRTGHGENVRGLINQRSGQRLAAQSAYICAFLCADFYGIQAWRLAANRVHAGGCDFDVLPVAGHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISDGPRASFRQ*
Ga0137378_1061394513300012210Vadose Zone SoilVRTGHGENVRSLINQRSGQRLAAQSAYICAFLCAHFYGVQAWRLAANRVYAGGCDFDVLPVASHAAKKPFRDRAPTNVACADEEDVFHGSERAANAFIKLEANLSKSISGGLKASFRQ*
Ga0137398_1005747143300012683Vadose Zone SoilENVRGLIHQRSGQRLAAQSAYICAFLCADFYGVQAWRLAANRVHAGGCDFDLLPVAGHAAKKPFRDRAPTNVACADEEDVFHGSERAANAFIKLEANPSKSISDGPRASFRQ*
Ga0137398_1017392723300012683Vadose Zone SoilVRTGHGENVRGLINQRAGKRLAAQSAYICAFLCADFYGVKAWRLAANRMDAGGCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSIFGGPKASFRQ*
Ga0157287_104017323300012885SoilSLINQRSSQRLAAQSADIRAFLCAHFHGVQAWWLAANRVHTGRCDFDVLAVASHAPKKPFGDRAPTNVACADEENVFHSSKRAANAFMKLEANLSKSISVA*
Ga0157298_1012838223300012913SoilHGENVRSLINQRSSQRLAAKIAYVCAFLRADFDGVQARRLAPNRVDTSRCNFDVLPVASQAAKKPFCNRAPTNIACADEEDVFHGSERAAGAFTKLKANLSKSISDGPGASFRK*
Ga0157302_1001482313300012915SoilRLAAKIAYVCAFLCADFDGVQAWRLAPNRVDTSRCNFDVLPVASQAAKKPFCNRAPTNIACADEEDVFHGSERAAGAFIKLKANLSKSISDGPTASFRQ*
Ga0137396_1014596443300012918Vadose Zone SoilYICAFLCADFYGVQAWRLAANRVHASRCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISDGPRASFLQ*
Ga0137404_1110287913300012929Vadose Zone SoilVRTGHGENVRSLINQRSGQRLAAQRAYICAFLCAHFYGVQAWRLAANRVHAGGRDFDVLPVASHPAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISGGLKASFR
Ga0164299_1153943413300012958SoilERFFRTLWKQCLDRFDVRTGHGENVRSLIHQRSRQRLAAQTADICAFGCADFHGVQAWWLAANRVYACGCDFDVLSVASQAAKKSFRYGAPTNVACANKENVFHGQNAQRTRLSKLEANLSKSISDGPRASFCQ*
Ga0164301_1181649413300012960SoilTLWKQCLDRFDVRTSHGENVRSLIHQRSRQRLAAQTADICAFGCADFHGVQAWWLAANRVYACGCDFDVLSVASQAAKKSFRYRAPTNVACADKENVFHGQNAQRTRLSKLEANLSKSISDGPRASFRQ*
Ga0164302_1149483623300012961SoilLINQRSSQRLAAKIAYVCAFLCADFDGVQAWRLAPNRVDTSRCNFDVPPVASQAAKKPFCNRAPTNIACADEEDVFHGSERAAGAFIKLKANLSKSISGDRRASFRQRFVASRTGALRLL
Ga0164304_1072367913300012986SoilMRTGHGENVRSLINQRSSQRLAAKIAYVCAFLCADFDGVQAWRLAPNRVDTSRCNFDVPPVASQAAKKPFCNRAPTNIACADEEDVFHGSERAAGAFIKLKANLSKSISGDRRASFRQRFVASRTGALRLL*
Ga0164307_1099555223300012987SoilENVRRLINQRSGQRLASQSAYIRAFLCADFYGVQAWWLPANRVHAGRCDFDVLPVASQTAKKPFLDRASTNVACADEEDVFHGSERAANAFIKLGANLSKSISDGPRASSRQ*
Ga0157374_1201023123300013296Miscanthus RhizosphereERFFRTLWKQRLYRFDVRTGHGENVRSLINQRSSQRLAAKIAYVCAFLRADFAGVQARRLAPNRVDTSRCNLDVLPVASQAAKKPFCNRAPTNIACADEEDVFHGSERAAARLSN*
Ga0163163_1141119823300014325Switchgrass RhizosphereRSGQWLAPQIADICAFVCADLYGVHARRLATNRMHPRGCDFDLLPVASQTAKEPFGDRAPANIACADEEDVFHGLERAASAFMKLEANMTKSISGAQQASFRH*
Ga0157376_1031334923300014969Miscanthus RhizosphereVRGLINKRSGQWLAPQIADICAFVCADLYGLHARRLATNRMDTGGCDFDLLPVASQTAKEPFGDRAPANIACADEEDVFHGFERAASAFMKLEANMTKSISGAQQASFRH*
Ga0137414_117122043300015051Vadose Zone SoilVKQCLYRFEVRTGHGENVRGLINQRSGQRLAAQSAYICAFLCADFYGRTGLAAGREPHARPADATSMSFGCQSSGEKAFRDRAPTNVSCADEEDVFHGSERAANAFYQTRSNLSKSISVV
Ga0137411_123911913300015052Vadose Zone SoilLVNQRAGQRLAAQSAYICAFLCADFYGVQAWRLAANRVHASRCDFDVLPVASHAAKKPFRDRAPTNISCADKEDVFHGSERAANAFIKLEANLSKSISGGLKASFCQ*
Ga0132257_10160180323300015373Arabidopsis RhizosphereAGHGENVRGLINQRSGQWLAAEFADICAFLCAHFYGVQARRLAANRVHAGRRDFDVLPVANHAAKKPFGDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISSGLKASFRQ*
Ga0182033_1003115613300016319SoilRLAAKIAYVCAFLCADFDGVQAWRLAPNRVDTSRCNFDVLPVASQAAKKPFCYRAPTNVACADEEDAFHGSERAASAFIKLEGNLSKSISDGAGASFRQ
Ga0184604_1009124113300018000Groundwater SedimentFLCADFHGVQAWRLATNSVHAGRCGFDVLPVASQPAKKPFRDRAPTNVACADEEDVFHGSKRAANAFIKLEANLSKSISDGPRAWFRQ
Ga0184608_1034524413300018028Groundwater SedimentQSAYICAFLCADFYGVQAWRLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFLKLEANLSKSISGSLRASFRQ
Ga0184638_129024313300018052Groundwater SedimentLAAQSAYICAFLCADFHGVQAWRLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISGRLKASFRQ
Ga0184623_1003241543300018056Groundwater SedimentTGHGENVRSLINQRAGQRLAAQSAYICPFLCADFYGVQAWRLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISDGPRAWFRQ
Ga0184624_1030902923300018073Groundwater SedimentFRTLWKQCLYRFDVRTGHGENVRSLINQRAGQRLAAQSAYICAFLCADFYGVQAWRLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVACADEEDVFHGSERAANAFIKLEANLSKSISGGLKASFRQ
Ga0193693_102304923300019996SoilVRTGHGENVRSLINQRAGQRLAAQGAYICAFLCADFYGVQAWRLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISGGVKASFRQ
Ga0193730_117202613300020002SoilARQRLAAESAYICAFLCADFYGVQAWRLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISGGLKASFRQ
Ga0193755_111953113300020004SoilFRTLWKQCLYRFDVRTGHGENVRGLINQRAGQRLAAQSADICAFLCADFYGVQAWRLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISGGLKASFRQ
Ga0193750_106322823300021413SoilAQSTYICAFLCADFYGVQAWRLAANRVHSGRRDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISGGRRASFRQ
Ga0126371_1021801813300021560Tropical Forest SoilDFDGVQAWRLAPNRVDTSRCNFDVLPVASQAAKKPFCNRAPTNIACADEEDVFHGSERAAGAFIKLKANLSKSISGDRRASFRQ
Ga0207663_1059151913300025916Corn, Switchgrass And Miscanthus RhizosphereVRSLINQRAGQRLAAQGAYICAFLCADFYGVQAWRLAANRVHAGRCDFDVLPVASNAAKKPLCDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISSGLKASFRQ
Ga0207700_1171522023300025928Corn, Switchgrass And Miscanthus RhizosphereENVRSLIHQRSGQRLAAQSADISAFGCADFYGVQAWWLAANRVYAGGCDFDVLPVANQAAKKPFRDGAPTNVACADKEDVFHGQNAQPTRLSKLEANLSKSISDGPRASFRQ
Ga0207664_1145207113300025929Agricultural SoilYRFDVPTSHRENVRSLINQRSSQRLAAQSAYICAFLCADFYGVQAWWLPANRVHAGRCDFDVLSVASQAAKKPFRDRASTNVACADEEDVFHGSERAANAFIKLGANLSKSISDGPRASFRQ
Ga0207701_1011475413300025930Corn, Switchgrass And Miscanthus RhizosphereCAFLRADFDGVQARRLAPNRVDTSRCNFDVLPVASQAAKKPFCNRAPTNIACADEEDVFHGSERAAGAFIKLKANLSKSISGDRRASFRQRFVASRTGALQLL
Ga0209027_120119313300026300Grasslands SoilERFFRTLWKQCLYRFEVRTGHGENVRSSINQRSGQRLAAQVAYVCAFLCADFHRIHAWRLTTNRVHAGRCDFNVLPVASQSAKKPFCDRAPTNVTCADEEDVFHGSQRAANAFLNLKANLSKSISDGPRASFRE
Ga0209240_113523523300026304Grasslands SoilAYICAFLCADFYGIQAWRLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISDGPRASFHQ
Ga0209375_122486013300026329SoilLDVRAGHRENVRSLINQRSGQRLTAQRAYICAFLCAHFYGVQAWRLAANRVHAGGRDFDVLPVASHAAKKPFRDRAPTNVACADEEDVFHGSKRVANAFIKLEANLSKSISDGPRASFRQ
Ga0257156_112562623300026498SoilAAESAYICAFLCADFYGVQAWRLAANRVHAGGCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISGGPKASFRQ
Ga0209807_106374613300026530SoilTLWKQCLYRFDVRTGHGENVRSLINQRSGQRLAAQRAYICAFLCAHFYGVQAWRLAANRVHAGGRDFDVLPVASHAAKKPFRDRAPTNVACADEEDVFHGSERAANAFIKLEANLSKSISDGPRTPVRQ
Ga0209474_1063586213300026550SoilSGQRLTAQRAYICAFLCAHFYGVQAWRLAANRVHAGGRDFDVLPVASHAAKKPFRDRAPTNVACADEEDVFHGSERAANAFIKLEANLSKSISDGPRASFRQ
Ga0207509_10487313300026816SoilYICAFLCADFYGVQAWRLAANRVHAGGCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISDGPRASFRQ
Ga0209465_1012785713300027874Tropical Forest SoilQRLAAKIAYVCVFLCADFYGVQAWRLAPNRVDTSRCNFDVLPVASQAAKKPFRDRAPTNVTCADEEDVFHGSERAAGAFIKLKANLSKSISGDRRASFRQ
Ga0209590_1005186413300027882Vadose Zone SoilRAFLCADFYGVQAWRLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISDGPRASFRQ
Ga0137415_1001214023300028536Vadose Zone SoilVRTGHGENVRSLIHQRSGQRLAAQTADICAFGCADFYGVQAWWLAANRVYAGGCDFDILPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSIFGGPKASFRQ
Ga0307320_1024511813300028771SoilGHGENVRSLINQRAGQRLAAQSAYICAFLCADFYGVQAWRLAANRVHAGRCDFDVLPVASHAAKKPFRDWAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISYGPRASVHQ
Ga0307299_1037349423300028793SoilYQRSGQRLAAQTADICAFLCTDFHCVQAWWLAANRVHAGRCDFDVLPVASQPAKKPFCYRASTDVACADEEDAFHGSERAANAFIKLEANVSKSISDGPRASFRQ
Ga0307281_1038826323300028803SoilGKNVRSLIHQRSGQRLAAQTADICAVGCADFYGVQAWWLAANRVYAGGCDFDVLPVASQAAKKPFRDGAPTNVACADKEDVFHGSERAANAFIKLEANLSKSISDGPRASFRQ
Ga0307312_1100740923300028828SoilLYRFEVRTGHGENVRSLINQRAGQRLAAQSAYICAFLCADFYGVQAWRLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISGGLKASFRQ
Ga0307278_1025347313300028878SoilLAAQGAYICAFLCADFYGVQAWRLAANRVHAGRCDFDVLPIASHAAKKPFRDRAPTNVACADEEDVFHGSKRAANAFIKLEANLSKSISDGPRASFRQ
Ga0075403_1127984123300030846SoilGHGENMRSLINQRSGQRLATQSAYICPFLCADFYGVQAWWLAANRVYAGGCDFDVLPVTSQAAKKPFRDRAPTNVACADEEDVFHGSERAANAFIKLEAKLSKSIFDGPTASFRQ
Ga0075394_1178120223300030969SoilAFGCADFYGVQAWWLAANRVYAGGCDFDVLPVASHAAKKPFRDWAPTNVTCADEEDVFHGSERAANAFIKLEANLSKSISDGPRASFRQ
Ga0310888_1013553923300031538SoilQCLYRFDVRTGHGENVRGLINKRSGQWLAPQIADICAFVCADLYGVHARRLATNRMHPRGCDFDLLPVASQTAKEPFGDRAPANIACADEEDVFHGFERAASAFMKLEANMTKSISGAQQASFRH
Ga0310887_1068821123300031547SoilDFYRVQARWLAANRVYPGRCDFDVLPVASQAAKKPFRDRAPTNVACADKEDVFHGQNAQPTRLSKLEANLSKSISDGPRASFRQ
Ga0310887_1074344313300031547SoilECFFCTLWKQCLYRFDVRTGHGENVRGLINKRSGQWLAPQIADICAFVCADLYGVHARRLATNRMHPRGCDFDLLPVASQTAKEPFGDRAPANIACADEEDVFHGLGRAASAFMKLEANMTKSISGLNKRRFAIDLALLATMHCG
Ga0318574_1078300613300031680SoilGENVRSLINQRSSQRLAAKIAYVCAFLCADFDGVQAWRLAPNRVDTSRCNFDVLPVASQAAKKPFCYRAPTNVACADEEDAFHGSERAASAFIKLEGNLSKSISDGAGASFRQ
Ga0310813_1137400813300031716SoilAQSAYICAILCADFYGVQAWRLAANRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVSCADEEDVFHGSERAANAFIKLEANLSKSISDGPRASFHQ
Ga0318547_1025674413300031781SoilRRLINQRSGQWLAAQITYVCTFLRADFHGVQAWRLATNRVHASRCDFDVLSIASQAAKKPFCNRTPTNVACADEENVFHGSQRAASASSKLKANLSKSISDAAGASFRQ
Ga0310917_1089199113300031833SoilGENVRSLVNQRSSQRLAAKIAYVCAFLCTDFHGVQAWRLAPNRVDTSRCNFDVLPVASQAAKKPFCYRAPTNVACADEEDAFHGSERAASAFIKLEGNLSKSISDGAGASFRQ
Ga0306919_1037732023300031879SoilAKIAYVCAFLCADFDGVQAWRLAPNRVDTSRCNFDVLPVASQAAKKPFRDRATTNIACADEEDVFHGSERAANAFIKLEAKLSKSISGDRRASFRQRFVASRTGALRVL
Ga0310912_1096064223300031941SoilRFATETADVGAFLCAYLDSVEAWRLATNRVYTGGSDFDVLSVPNQSAKKPFRDWAATNISCADKEDVFHDSDRAANAFPNLEANLRKSISSV
Ga0310885_1035100113300031943SoilCTLWKQCLYRFDVRTGHGENVRGLINKRSGQWLAPQIADICAFVCADLYGVHARRLATNRMHPCGCDFDLLPVASQTAKEPFGDRAPANIACADEEDVFHGFERAASAFMKLEANMTKSIFGAQQASFRH
Ga0308176_1188716413300031996SoilDQGPGQRLAAQVAYVCAFRCADFYGVQTWRLAANRVHASRCDFDVLAVANHAAKKPFRDRAPTNVSCADKEDVFHGSERAANAFIKLEANLSKSISSGLTASFRQ
Ga0310890_1127108923300032075SoilQCLYRFDVRPGHGENVRGLINKRSGQWLAPQIADICAFVCADLYGVHARRLATNRMHPRGCDFDLLPVASQTAKEPFGDRAPANIACADEEDVFHGFERAASAFMKLEANMTKSISGAQQASFRH
Ga0307470_1159721023300032174Hardwood Forest SoilHGENVRSLINQRSGQRLASQSAYICAFLCADFYGVQAWWLPANRVHAGRCDFDVLPVASQTAKKPFRDRASTNVACADEEDVFHGSERAANAFIKLGANLSKSISDAPRASFRQ
Ga0307471_10188468723300032180Hardwood Forest SoilSHGEDVRSLINQRAGQRLAAQSADICAFLCADFYGIQAWRLAAHRVHAGRCDFDVLPVASHAAKKPFRDRAPTNVACADEEDVFHGSERAANAFIKLEANLSKSISDGPRASFRQ
Ga0307472_10217450413300032205Hardwood Forest SoilCTGHGENVRRLINQRSGQRLASQSAYIRAFLCADFYGVQAWWLPANRVHAGRCDFDVLSVASQAAKKPFRDRASTNVACADEEDVFHGSERAANAFIKLGANLSKSISDGPRASFRQ
Ga0310896_1010556513300032211SoilHGENVRGLINKRSGQWLAPQIADICAFVCADLYGVHARRLATNRMHPRGCDFDLLPVASQTAKEPFGDRAPANIACADEEDVFHGFERAASAFMKLEANMTKSIFGAQQASFRH
Ga0306920_10090812013300032261SoilIDQCSRQGLTAQIADVCACLRADFHGIHARWLATNRVHAGGCDFDVLPVAGQPPKKPFCDRAPTNITCADEEDVFHGSERAAGAFIKLEANLSKSISGDRRASFRQ
Ga0310914_1008117253300033289SoilRSSQRLAAKIAYVCAFLCTDFHGVQAWRLAPNRVDTSRCNFDVLPVASQAAKKPFRDRASTNVACADEEDAFHGSERAASAFIKLEGNLSKSISDGAGASFRQ


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.