Metagenome / Metatranscriptome Family F077700

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077700
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	40 residues
Representative Sequence	AIIILHAITGVCTPACLLAASISVEAVTPPLVGLAILKELLPD
Number of Associated Samples	97
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.71 %
% of genes near scaffold ends (potentially truncated)	86.32 %
% of genes from short scaffolds (< 2000 bps)	58.12 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.761 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil (12.821 % of family members)
Environment Ontology (ENVO)	Unclassified (20.513 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.991 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 29.58% β-sheet: 0.00% Coil/Unstructured: 70.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF13302	Acetyltransf_3	11.11
PF10079	BshC	8.55
PF09862	DUF2089	7.69
PF08240	ADH_N	3.42
PF00072	Response_reg	2.56
PF00188	CAP	2.56
PF12867	DinB_2	2.56
PF13419	HAD_2	2.56
PF00486	Trans_reg_C	1.71
PF00510	COX3	1.71
PF05096	Glu_cyclase_2	1.71
PF01145	Band_7	1.71
PF02517	Rce1-like	0.85
PF00561	Abhydrolase_1	0.85
PF12836	HHH_3	0.85
PF01799	Fer2_2	0.85
PF13469	Sulfotransfer_3	0.85
PF16901	DAO_C	0.85
PF02518	HATPase_c	0.85
PF01810	LysE	0.85
PF13442	Cytochrome_CBB3	0.85
PF13231	PMT_2	0.85
PF01797	Y1_Tnp	0.85
PF03009	GDPD	0.85
PF00924	MS_channel	0.85
PF00702	Hydrolase	0.85
PF13950	Obsolete Pfam Family	0.85
PF01850	PIN	0.85
PF00872	Transposase_mut	0.85
PF09907	HigB_toxin	0.85
PF01402	RHH_1	0.85
PF09084	NMT1	0.85
PF02771	Acyl-CoA_dh_N	0.85
PF02472	ExbD	0.85
PF05598	DUF772	0.85
PF04055	Radical_SAM	0.85
PF08281	Sigma70_r4_2	0.85
PF00293	NUDIX	0.85
PF01555	N6_N4_Mtase	0.85
PF00756	Esterase	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	2.56
COG3823	Glutamine cyclotransferase	Posttranslational modification, protein turnover, chaperones [O]	1.71
COG1845	Heme/copper-type cytochrome/quinol oxidase, subunit 3	Energy production and conversion [C]	1.71
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.85
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.85
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.85
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.85
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.85
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.85
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.85
COG0584	Glycerophosphoryl diester phosphodiesterase	Lipid transport and metabolism [I]	0.85
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.85
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.85
COG0848	Biopolymer transport protein ExbD	Intracellular trafficking, secretion, and vesicular transport [U]	0.85
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.85
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.76 %
Unclassified	root	N/A	16.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.76 %
Unclassified	root	N/A	16.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.76 %
Unclassified	root	N/A	16.24 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.19 %
Unclassified	root	N/A	16.24 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.42 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	18.80 %
Unclassified	root	N/A	16.24 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	8.55 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	17.09 %
Unclassified	root	N/A	16.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.85 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.85 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	16.24 %
Unclassified	root	N/A	16.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.85 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.85 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.85 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	5.13 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	5.13 %
Acidobacteriales bacterium 13_2_20CM_55_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_55_8	0.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.85 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.85 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5.13 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	5.13 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.85 %
Acidobacteriales bacterium 13_2_20CM_55_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_55_8	0.85 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.85 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10016675	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4665	Open in IMG/M
3300001131\|JGI12631J13338_1002204	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4432	Open in IMG/M
3300001170\|JGI12704J13340_1005604	All Organisms → cellular organisms → Bacteria → Acidobacteria	1192	Open in IMG/M
3300001305\|C688J14111_10020926	All Organisms → cellular organisms → Bacteria	1929	Open in IMG/M
3300001356\|JGI12269J14319_10000264	All Organisms → cellular organisms → Bacteria	49748	Open in IMG/M
3300001401\|JGI20189J14885_1000854	All Organisms → cellular organisms → Bacteria	9678	Open in IMG/M
3300001593\|JGI12635J15846_10000706	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	29109	Open in IMG/M
3300001593\|JGI12635J15846_10026471	All Organisms → cellular organisms → Bacteria	4685	Open in IMG/M
3300001661\|JGI12053J15887_10020677	All Organisms → cellular organisms → Bacteria	3684	Open in IMG/M
3300005162\|Ga0066814_10100200	Not Available	542	Open in IMG/M
3300005171\|Ga0066677_10054456	All Organisms → cellular organisms → Bacteria	2010	Open in IMG/M
3300005329\|Ga0070683_100262022	All Organisms → cellular organisms → Bacteria	1644	Open in IMG/M
3300005336\|Ga0070680_100308395	All Organisms → cellular organisms → Bacteria	1342	Open in IMG/M
3300005435\|Ga0070714_100936923	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300005445\|Ga0070708_100395947	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1302	Open in IMG/M
3300005445\|Ga0070708_100741912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	923	Open in IMG/M
3300005531\|Ga0070738_10010945	All Organisms → cellular organisms → Bacteria → Proteobacteria	8068	Open in IMG/M
3300005534\|Ga0070735_10007438	All Organisms → cellular organisms → Bacteria → Proteobacteria	8738	Open in IMG/M
3300005539\|Ga0068853_100878573	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300005541\|Ga0070733_10058662	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	2416	Open in IMG/M
3300005541\|Ga0070733_10113230	All Organisms → cellular organisms → Bacteria	1739	Open in IMG/M
3300005541\|Ga0070733_10596336	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300005542\|Ga0070732_10351872	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300005559\|Ga0066700_10853856	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300005591\|Ga0070761_10040754	All Organisms → cellular organisms → Bacteria	2605	Open in IMG/M
3300005591\|Ga0070761_10292246	All Organisms → cellular organisms → Bacteria → Acidobacteria	979	Open in IMG/M
3300005602\|Ga0070762_10007900	All Organisms → cellular organisms → Bacteria	5245	Open in IMG/M
3300005602\|Ga0070762_10013800	All Organisms → cellular organisms → Bacteria	4109	Open in IMG/M
3300005602\|Ga0070762_10019171	All Organisms → cellular organisms → Bacteria	3549	Open in IMG/M
3300005610\|Ga0070763_10064772	All Organisms → cellular organisms → Bacteria	1772	Open in IMG/M
3300005712\|Ga0070764_10480447	Not Available	744	Open in IMG/M
3300005712\|Ga0070764_10628705	Not Available	656	Open in IMG/M
3300005921\|Ga0070766_10001314	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12054	Open in IMG/M
3300005921\|Ga0070766_10299257	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300005921\|Ga0070766_10497525	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300005994\|Ga0066789_10306225	Not Available	665	Open in IMG/M
3300006052\|Ga0075029_100049923	All Organisms → cellular organisms → Bacteria	2420	Open in IMG/M
3300006052\|Ga0075029_100204966	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300006052\|Ga0075029_100392538	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	901	Open in IMG/M
3300006059\|Ga0075017_100045015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	2948	Open in IMG/M
3300006059\|Ga0075017_100643417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	813	Open in IMG/M
3300006162\|Ga0075030_100095914	All Organisms → cellular organisms → Bacteria	2422	Open in IMG/M
3300006173\|Ga0070716_100028233	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3021	Open in IMG/M
3300006174\|Ga0075014_100559014	All Organisms → cellular organisms → Bacteria → Acidobacteria	648	Open in IMG/M
3300006176\|Ga0070765_100088557	All Organisms → cellular organisms → Bacteria	2646	Open in IMG/M
3300006800\|Ga0066660_10235181	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1422	Open in IMG/M
3300007788\|Ga0099795_10424201	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300007982\|Ga0102924_1243812	All Organisms → cellular organisms → Bacteria → Acidobacteria	746	Open in IMG/M
3300009643\|Ga0116110_1261635	Not Available	553	Open in IMG/M
3300009665\|Ga0116135_1007786	All Organisms → cellular organisms → Bacteria	3965	Open in IMG/M
3300009665\|Ga0116135_1201953	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	760	Open in IMG/M
3300009824\|Ga0116219_10001050	All Organisms → cellular organisms → Bacteria	26930	Open in IMG/M
3300009839\|Ga0116223_10851236	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300009839\|Ga0116223_10905182	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300010379\|Ga0136449_100133842	All Organisms → cellular organisms → Bacteria	4928	Open in IMG/M
3300011120\|Ga0150983_11916721	Not Available	534	Open in IMG/M
3300012189\|Ga0137388_10241587	All Organisms → cellular organisms → Bacteria → Acidobacteria	1641	Open in IMG/M
3300012200\|Ga0137382_10731632	Not Available	710	Open in IMG/M
3300012203\|Ga0137399_10490859	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1029	Open in IMG/M
3300012207\|Ga0137381_10028867	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4460	Open in IMG/M
3300012685\|Ga0137397_10701156	Not Available	752	Open in IMG/M
3300012917\|Ga0137395_11135971	Not Available	551	Open in IMG/M
3300013306\|Ga0163162_10042036	All Organisms → cellular organisms → Bacteria	4573	Open in IMG/M
3300014155\|Ga0181524_10206102	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	958	Open in IMG/M
3300014158\|Ga0181521_10378841	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	702	Open in IMG/M
3300014200\|Ga0181526_10490658	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300014489\|Ga0182018_10012935	All Organisms → cellular organisms → Bacteria	5840	Open in IMG/M
3300014495\|Ga0182015_10479501	Not Available	796	Open in IMG/M
3300014502\|Ga0182021_11572663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	792	Open in IMG/M
3300015373\|Ga0132257_100674736	Not Available	1282	Open in IMG/M
3300017946\|Ga0187879_10007425	All Organisms → cellular organisms → Bacteria	7176	Open in IMG/M
3300017946\|Ga0187879_10024054	All Organisms → cellular organisms → Bacteria	3739	Open in IMG/M
3300017975\|Ga0187782_11102981	Not Available	619	Open in IMG/M
3300018026\|Ga0187857_10074330	Not Available	1688	Open in IMG/M
3300018030\|Ga0187869_10027917	Not Available	3140	Open in IMG/M
3300018034\|Ga0187863_10046155	All Organisms → cellular organisms → Bacteria	2507	Open in IMG/M
3300018040\|Ga0187862_10375241	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300018042\|Ga0187871_10036499	All Organisms → cellular organisms → Bacteria	3041	Open in IMG/M
3300018047\|Ga0187859_10031301	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2878	Open in IMG/M
3300018088\|Ga0187771_10014557	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5764	Open in IMG/M
3300019362\|Ga0173479_10756282	Not Available	532	Open in IMG/M
3300019787\|Ga0182031_1413426	All Organisms → cellular organisms → Bacteria	4530	Open in IMG/M
3300020582\|Ga0210395_10006762	All Organisms → cellular organisms → Bacteria	8690	Open in IMG/M
3300021171\|Ga0210405_10185285	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1650	Open in IMG/M
3300021401\|Ga0210393_10080399	All Organisms → cellular organisms → Bacteria	2580	Open in IMG/M
3300021405\|Ga0210387_10339222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1326	Open in IMG/M
3300021407\|Ga0210383_10064038	All Organisms → cellular organisms → Bacteria	3070	Open in IMG/M
3300021413\|Ga0193750_1043395	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_55_8	971	Open in IMG/M
3300021433\|Ga0210391_10000586	All Organisms → cellular organisms → Bacteria	37035	Open in IMG/M
3300022557\|Ga0212123_10272112	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300025412\|Ga0208194_1008767	All Organisms → cellular organisms → Bacteria	1713	Open in IMG/M
3300025915\|Ga0207693_10000273	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	47746	Open in IMG/M
3300027562\|Ga0209735_1009916	All Organisms → cellular organisms → Bacteria → Acidobacteria	1828	Open in IMG/M
3300027648\|Ga0209420_1000489	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	20739	Open in IMG/M
3300027676\|Ga0209333_1001742	All Organisms → cellular organisms → Bacteria	10150	Open in IMG/M
3300027692\|Ga0209530_1074314	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	978	Open in IMG/M
3300027701\|Ga0209447_10131484	Not Available	687	Open in IMG/M
3300027855\|Ga0209693_10067595	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1761	Open in IMG/M
3300027867\|Ga0209167_10145676	All Organisms → cellular organisms → Bacteria	1240	Open in IMG/M
3300027884\|Ga0209275_10029184	All Organisms → cellular organisms → Bacteria	2535	Open in IMG/M
3300027889\|Ga0209380_10003973	All Organisms → cellular organisms → Bacteria	9104	Open in IMG/M
3300027908\|Ga0209006_10132350	All Organisms → cellular organisms → Bacteria → Acidobacteria	2197	Open in IMG/M
3300027908\|Ga0209006_10171536	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1895	Open in IMG/M
3300027911\|Ga0209698_10018026	All Organisms → cellular organisms → Bacteria	6790	Open in IMG/M
3300027911\|Ga0209698_10126041	All Organisms → cellular organisms → Bacteria → Proteobacteria	2118	Open in IMG/M
3300028808\|Ga0302228_10139356	Not Available	1122	Open in IMG/M
3300029982\|Ga0302277_1143626	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	985	Open in IMG/M
3300030007\|Ga0311338_10052484	All Organisms → cellular organisms → Bacteria	5416	Open in IMG/M
3300030507\|Ga0302192_10071286	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1696	Open in IMG/M
3300031234\|Ga0302325_10510824	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	1811	Open in IMG/M
3300031234\|Ga0302325_11026856	Not Available	1122	Open in IMG/M
3300031236\|Ga0302324_100662990	All Organisms → cellular organisms → Bacteria	1481	Open in IMG/M
3300031344\|Ga0265316_10699631	Not Available	714	Open in IMG/M
3300031525\|Ga0302326_10378443	All Organisms → cellular organisms → Bacteria	2208	Open in IMG/M
3300031525\|Ga0302326_10998033	All Organisms → cellular organisms → Bacteria → Acidobacteria	1177	Open in IMG/M
3300032180\|Ga0307471_100222937	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1911	Open in IMG/M
3300034681\|Ga0370546_073089	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	565	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.58%
Host-Associated	Host-Associated	3.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.50%
Aquatic	Environmental → Aquatic	23.08%
Plants	Host-Associated → Plants	3.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.81%
Freshwater	Environmental → Aquatic → Freshwater	13.68%
Sediment	Environmental → Aquatic → Sediment	7.69%
Peat	Environmental → Terrestrial → Peat	7.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.56%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.85%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	30.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.06%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.69%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.98%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	23.08%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.51%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.69%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.27%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.42%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.71%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.71%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	12.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.26%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.69%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	6.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.98%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.98%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.13%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.56%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.71%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.71%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.71%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.71%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.71%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.71%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.85%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001131	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1	Environmental	Open in IMG/M
3300001170	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001401	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025412	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300029982	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_1	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030507	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100166757	3300000567	Peatlands Soil	AISGVCTPACLLAASISVEAVTPPLVGLAFKELLPD*
JGI12631J13338_10022041	3300001131	Forest Soil	AIIILHAITGVCTPACLLAASISVEAVTPPLVGMAFKATSILRSK*
JGI12704J13340_10056042	3300001170	Forest Soil	LAIIILLTITGVCPPACLLAASISVEAVTPPLVGMACKELFPD*
C688J14111_100209263	3300001305	Soil	LAIIILHAITGVCTPACLLAASISVEAVTPPLVGIGL*
JGI12269J14319_1000026410	3300001356	Peatlands Soil	LAIIILHAISGVCTPACLLAASISVEAVTPPLVGLAFKELLPD*
JGI20189J14885_10008542	3300001401	Arctic Peat Soil	LAIIILPTITGASTLACLLAASISVEAVTPPLVGLAVKELLPD*
JGI12635J15846_100007061	3300001593	Forest Soil	IIILHAITGVCTPACLLAASISVEAVTPPLVGLAWKELLPD*
JGI12635J15846_100264717	3300001593	Forest Soil	ITGVCTPACLLAASISVEAVTPPLVGLAILKELNPD*
JGI12053J15887_100206771	3300001661	Forest Soil	IIIVPTITGVCTPACLLAASISVEAVTPPLVGWPYSKNYFQTRCETKGSQTTN*
Ga0066814_101002001	3300005162	Soil	LAIIILPTITGASTLACLLAASISVEAVTPPLVGMAFKEQDNRP*
Ga0066677_100544564	3300005171	Soil	LAIVVLHAITGVCTPACLLAASISVEAVTPPLVGWPFKEPLPI*
Ga0070683_1002620221	3300005329	Corn Rhizosphere	LPTITGASTLACLLAASISVEAVTPPLVGMAFKEQDNRP*
Ga0070680_1003083953	3300005336	Corn Rhizosphere	AIIILPTITGASTLACLLAASISVEAVTPPLVGMAFKEQDNRP*
Ga0070714_1009369231	3300005435	Agricultural Soil	LAIIILHAITGVCTPACLLAASISVEAVTPPYLGLACKDPLPI*
Ga0070708_1003959472	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	SVWLAIVVLHAITGVCTPACLLAASISVEAVTPPLVGLAF*
Ga0070708_1007419121	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VLHAITGVCTPACLLAASISVEAVTPPLVGLAFKELLSFY*
Ga0070738_100109456	3300005531	Surface Soil	LAIIILLTIAGVCTPACLLAASISVEAVTPPLVGFGHSKELLPD*
Ga0070735_100074381	3300005534	Surface Soil	LAIIILHAITGVCTPACLLAASISVEAVTPPLVGLAMQ
Ga0068853_1008785732	3300005539	Corn Rhizosphere	LAIIILPTITGASTLACLLAASISVEAVTPPLVGMAFKEQDNRP
Ga0070733_100586624	3300005541	Surface Soil	LAIIILHAIAGVCTPACLLAASISVEAVTPPLVGLACKEPLPD*
Ga0070733_101132304	3300005541	Surface Soil	AIIILPTITGVCTPACLLAASISVEAVTPPLVGLAILKEPLPD*
Ga0070733_105963362	3300005541	Surface Soil	LAIIILHAIAGVCTLACLLAASISVEAVTPPLVGMACKELLPD*
Ga0070732_103518721	3300005542	Surface Soil	HAITGVCTPACLLAASISVEAVTPPLMGRALKELLPD*
Ga0066700_108538561	3300005559	Soil	ITGVCTPACLLAASISVEAVTPPLVGLACKDPLPI*
Ga0070761_100407541	3300005591	Soil	LAIIILPTITGVCTPACLLAASISVEAVTPPLVGLAILKELIPD*
Ga0070761_102922464	3300005591	Soil	TGVCTPACLLAASISVEAVTPPLVGLAILKEPLPD*
Ga0070762_100079001	3300005602	Soil	LAIIILPTITGVCTPACLLAASISVEAVTPPLVGLAILKELVPD*
Ga0070762_100138004	3300005602	Soil	LAIIILHAITGVCTLACLLAASISVEAVTPPLVGIGL*
Ga0070762_100191711	3300005602	Soil	LAIIILLTITGVCPPACLLAASISVEAVTPPLMRMACKELIPD*
Ga0070763_100647721	3300005610	Soil	AIIILHAITGVCTPACLLAASISVEAVTPPLVGLAILKELLPD*
Ga0070764_104804471	3300005712	Soil	IIILHAITGVCTPACLLAASISVEAVTPPLVGLACKEPLPD*
Ga0070764_106287052	3300005712	Soil	LAIIILPTITGASTLACLLAASISVEAVTPPLVGLAL*
Ga0070766_100013141	3300005921	Soil	AITGVCTPACLLAASISVEAVTPPLVGLAILKELLPD*
Ga0070766_102992571	3300005921	Soil	TGVCTPACLLAASISVEAVTPPLVGLAILKELVSD*
Ga0070766_104975251	3300005921	Soil	RMPFVDWQIILLTITGVCTPACLLAASISVEAVTPPLVGLAVLKELLPD*
Ga0066789_103062252	3300005994	Soil	LAIIIFHAITGVWTPACLLAASISVEAVTPPLMGMAFKEQTTWA*
Ga0075029_1000499234	3300006052	Watersheds	CHLLIGNIIFHAITGVWTPACLLAASISVEAVTPPLVGWPFKEQ*
Ga0075029_1002049661	3300006052	Watersheds	LIGNIILHAITGVCTPACLLAASISVEAVTPPLVGNGL*
Ga0075029_1003925381	3300006052	Watersheds	LAIIILHAIAGVCTPACLLAASISVESGTPPLVGLASKELPLF*
Ga0075017_1000450156	3300006059	Watersheds	CHLLIGNIIFHAITGVWTPACLLAASISVEAVTPPLVGWPCKEPLPI*
Ga0075017_1006434172	3300006059	Watersheds	ITGVCTPACLLAESISVEAVTPPLVGMADSKNKAL*
Ga0075030_1000959142	3300006162	Watersheds	LAIIIFHAITGVWTPACLLAASISVEAVTPPLVGWPFKEQ*
Ga0070716_1000282333	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LAIIILHAITGVCTPACLLAESISVEAVTPPLVGWPCKEQE*
Ga0075014_1005590141	3300006174	Watersheds	LAIIILHAITGVCTPACLLAASISVEAVTPPLVG*
Ga0070765_1000885571	3300006176	Soil	AIIILPTITGVCTPACLLAASISVEAVTPPLVGLAILKELVPD*
Ga0066660_102351811	3300006800	Soil	AYASVWLAIVVLHAITGVCTPACLLAASISVEAVTPPLVGLAF*
Ga0099795_104242012	3300007788	Vadose Zone Soil	LHAITGVCTPACLLAASISVEAVTPPLVGLAVVKELLPD*
Ga0102924_12438121	3300007982	Iron-Sulfur Acid Spring	TITGVCTPACLLAASISVEAVTPPLVGLAILKELVPD*
Ga0116110_12616351	3300009643	Peatland	AITGVCTPACLLAASISVEAVTPPLVGLAILKELFPI*
Ga0116135_10077861	3300009665	Peatland	ITGVCTPACLLAASISVEAVTPPLVGMACKELLPD*
Ga0116135_12019531	3300009665	Peatland	IILLTITGVCTPACLLAASISVEAVTPPLVGLAILKELFPI*
Ga0116219_100010501	3300009824	Peatlands Soil	TGVCTPACLLAASISVEAVTPPLVGLAFKELLPD*
Ga0116223_108512361	3300009839	Peatlands Soil	ITGVCTPACLLAASISVEAVTPPLVGLALQKNYF*
Ga0116223_109051822	3300009839	Peatlands Soil	LHAITGVCTPACLLAASISVEAVTPPLVGLAVQKSYF*
Ga0136449_1001338421	3300010379	Peatlands Soil	ITGVCTPACLLAASISVEAVTPQLVGLAILKELLPD*
Ga0150983_119167211	3300011120	Forest Soil	IIILPTITGVCTPACLLAASISVEAVTPPLVGLAVLKELLPD*
Ga0137388_102415875	3300012189	Vadose Zone Soil	IILHAITGVCTPACLLAASISVEAVTPPLVGWAFKELPLFWG*
Ga0137382_107316321	3300012200	Vadose Zone Soil	PTITGVCTPACLLAASISVEAVTPPLVGLALKDLLPI*
Ga0137399_104908592	3300012203	Vadose Zone Soil	AAYASVWLAIVVLHAITGVCTPACLLAASISVEAVTPPLVGLAF*
Ga0137381_100288671	3300012207	Vadose Zone Soil	ASVWLAIVVLHAITGVCTPACLLAASISVEAVTPPLVGLAF*
Ga0137397_107011562	3300012685	Vadose Zone Soil	AIIILPTITGVCTPACLLAASISVEAVTPPLVGMAILKELIPD*
Ga0137395_111359712	3300012917	Vadose Zone Soil	PTITGVCTPACLLAASISVEAVTPPLVEMAMFKELLPD*
Ga0163162_100420361	3300013306	Switchgrass Rhizosphere	ILPTITGASTLACLLAASISVEAVTPPLVGMAFKEQDNRP*
Ga0181524_102061023	3300014155	Bog	LAIIILHAITGVCTPACLLAASISVEAVTPPLVGMGL*
Ga0181521_103788413	3300014158	Bog	IILHAITGVCTPACLLAASISVEAVTPPLVGMGL*
Ga0181526_104906581	3300014200	Bog	TITGVCTPACLLAASISVEAVTPPLVGLAILKELIPD*
Ga0182018_100129351	3300014489	Palsa	ILPTITGVCTPACLLAASISVEAVTPPLVGLAILKELLPD*
Ga0182015_104795011	3300014495	Palsa	AITGVCTPACLLAASISVEAVTPPLVGLAILKELTPD*
Ga0182021_115726632	3300014502	Fen	HSITGVCTPACLLAASISVEAVTPPLVGMAFKELLPI*
Ga0132257_1006747362	3300015373	Arabidopsis Rhizosphere	AIIILPTITGVCTPACLLAASISVEAVTPPLVGLALKDPLPI*
Ga0187879_1000742511	3300017946	Peatland	ILPTITGVCTPACLLAASISVEAVTPPLVGLAILKELLPD
Ga0187879_100240541	3300017946	Peatland	ILPTITGVCTPACLLAASISVEAVTPPLVGLAILKELIPD
Ga0187782_111029811	3300017975	Tropical Peatland	ILPTITGVCTPACLLAASISVEAVTPPLGGIGLAKNHFQTRV
Ga0187857_100743301	3300018026	Peatland	TITGVCTPACLLAASISVEAVTPPLVGLAILKELLPD
Ga0187869_100279175	3300018030	Peatland	IIILLTITGVCTPACLLAASISVEAVTPPLVGLAILKELLPD
Ga0187863_100461553	3300018034	Peatland	AIIILPTITGVCTPACLLAASISVEAVTPPLVGLAILKELIPD
Ga0187862_103752411	3300018040	Peatland	IILHAITGVCTPACLLAASISVESVTPPLVGWACKELSLF
Ga0187871_100364995	3300018042	Peatland	PTITGVCTPACLLAASISVEAVTPPLVGLAILKELLPD
Ga0187859_100313011	3300018047	Peatland	LAIIILHAITGVCTPACLLAASISVEAVTPPLVGIGL
Ga0187771_100145571	3300018088	Tropical Peatland	LAIIILHAITGVCTPACLLAASISVETVTPPLVGNGLVKDLLPD
Ga0173479_107562821	3300019362	Soil	LPTITGASTLACLLAASISVEAVTPPLVGLAHIKIYFNCRSGASGS
Ga0182031_14134263	3300019787	Bog	MPFVDGNYHLHAITGVCTPACLLAASISVEAVTPPLVDRPFKELLLFW
Ga0210395_1000676210	3300020582	Soil	LAIIILPTITGVCTPACLLAASISVEAVTPPLVGLAILKELIPD
Ga0210405_101852853	3300021171	Soil	AIIILHAITGVCTPACLLAASISVEAVTPPLVGWAFKELPVF
Ga0210393_100803991	3300021401	Soil	AIIILPTITGVCTPACLLAASISVEAVTPPLVGLAILKELVPD
Ga0210387_103392222	3300021405	Soil	IIILLTITGVCTPACLLAASISVEAVTPPLVGLAF
Ga0210383_100640384	3300021407	Soil	ITGVCTPACLLAASISVEAVTPPLVGLAILKELVPD
Ga0193750_10433952	3300021413	Soil	VWLAIVVLHAITGVCTPACLLAASISVEAVTPPLVGLAFKELLPI
Ga0210391_1000058633	3300021433	Soil	IILHAIAGVCTPACLLAASISVEAVTPPLVGLAGKELFPD
Ga0212123_102721124	3300022557	Iron-Sulfur Acid Spring	LLTITGVCTPACLLAASISVEAVTPPLVGLAVQKNYF
Ga0208194_10087675	3300025412	Peatland	TITGVCTPACLLAASISVEAVTPPLVGLAVLKELLPD
Ga0207693_100002731	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	IIILPTITGVCTPACLLAASISVEAVTPPLVGLAKLKELLPD
Ga0209735_10099164	3300027562	Forest Soil	IIILHAITGVCTPACLLAASISVEAVTPPLVGLAWKELLPD
Ga0209420_10004891	3300027648	Forest Soil	IIILPTITGVCTPACLLAASISVEAVTPPLVGLAILKELNPD
Ga0209333_10017421	3300027676	Forest Soil	AIIILHAITGVCTPACLLAASISVEAVTPPLVGLAILKELLPD
Ga0209530_10743141	3300027692	Forest Soil	IIILHAITGVCTPACLLAASISVEAVTPPLVGIGL
Ga0209447_101314841	3300027701	Bog Forest Soil	LAIIILSTITGVNTPACLLAVSISVEAVTPPLVGIGL
Ga0209693_100675951	3300027855	Soil	ITGVCTPACLLAASISVEAVTPPLVGLAILKELLPD
Ga0209167_101456761	3300027867	Surface Soil	IIILPTITGVCTPACLLAASISVEAVTPPLVGLAILKEPLPD
Ga0209275_100291841	3300027884	Soil	LAIIILPTITGVCTPACLLAASISVEAVTPPLVGLAILKELVPD
Ga0209380_100039731	3300027889	Soil	ITGVCTPACLLAASISVEAVTPPLVGLAILKELIPD
Ga0209006_101323501	3300027908	Forest Soil	AIIIVYAITGVYTPACLLAASISVEAVTPPLVGMACKDPLPD
Ga0209006_101715361	3300027908	Forest Soil	AIIILHAITGVCTPACLLAASISVEAVTPPLVGLAILKELPPD
Ga0209698_1001802610	3300027911	Watersheds	IIILPTITGVCTPACLLAASISVEAVTPPLVGLAGKELLPD
Ga0209698_101260411	3300027911	Watersheds	IIIFHAITGVWTPACLLAASISVEAVTPPLVGWPFKEQ
Ga0302228_101393561	3300028808	Palsa	VCAPACLLAASISVEAVTPPLMGLAILKELLQTRCET
Ga0302277_11436261	3300029982	Bog	AIIILHAITGVCTPACLLAASISVEAVTPPLVGLAIKF
Ga0311338_100524841	3300030007	Palsa	IIVYAITGVYTPACLLAASISVEAVTPPLVGWPILKELIPD
Ga0302192_100712863	3300030507	Bog	IIILHAITGVCTPACLLAASISVEAVTPPLVGLAIKF
Ga0302325_105108242	3300031234	Palsa	ILLTITGVCTPACLLAASISVEAVTPPLVGMAIVKELAQS
Ga0302325_110268561	3300031234	Palsa	ITGVCTPACLLAASISVEAVTPPLVGLAILKELLLD
Ga0302324_1006629903	3300031236	Palsa	AIIILHAITGVCTPACLLAASISVEAVTPPLCGMDL
Ga0265316_106996311	3300031344	Rhizosphere	TGVCTPACLLAASISVEAVTPPLVGLAILKELLPD
Ga0302326_103784431	3300031525	Palsa	IIILHAITGVCTPACLLAASISVEAVTPPLCGMDL
Ga0302326_109980333	3300031525	Palsa	IILHAITGVCAPACLLAASISVEAVTPPLVGLAILKELLQTRCET
Ga0307471_1002229373	3300032180	Hardwood Forest Soil	LAIIILPTITGVCTPACLLAASISVEAVTPPLVGLAYKDPLPA
Ga0370546_073089_458_565	3300034681	Soil	MAIVVLHAITGVCTPACLLAASISVEAVTPPLVGLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077700

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences