Metagenome / Metatranscriptome Family F077651

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077651
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	36 residues
Representative Sequence	MKWLMWALVAVAIALGLALLAGKSDLRRFQRMRRM
Number of Associated Samples	74
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.03 %
% of genes near scaffold ends (potentially truncated)	13.68 %
% of genes from short scaffolds (< 2000 bps)	88.03 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.812 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (29.915 % of family members)
Environment Ontology (ENVO)	Unclassified (47.009 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.120 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 52.38% β-sheet: 0.00% Coil/Unstructured: 47.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF01513	NAD_kinase	17.09
PF00196	GerE	16.24
PF01183	Glyco_hydro_25	7.69
PF08450	SGL	1.71
PF07883	Cupin_2	0.85
PF04199	Cyclase	0.85
PF12679	ABC2_membrane_2	0.85
PF13560	HTH_31	0.85
PF13411	MerR_1	0.85
PF01636	APH	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	Cell wall/membrane/envelope biogenesis [M]	7.69
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	1.71
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	1.71
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.81 %
Unclassified	root	N/A	34.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.81 %
Unclassified	root	N/A	34.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.81 %
Unclassified	root	N/A	34.19 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	64.96 %
Unclassified	root	N/A	34.19 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	64.96 %
Unclassified	root	N/A	34.19 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	55.56 %
Unclassified	root	N/A	34.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.19 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	7.69 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	3.42 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.71 %
Cryptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales	0.85 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.19 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.69 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	3.42 %
Cryptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae	0.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.85 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.19 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.69 %
Actinophytocola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola	2.56 %
Allokutzneria	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Allokutzneria	0.85 %
Cryptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium	0.85 %
Herbidospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Herbidospora	0.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.19 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.69 %
Actinophytocola oryzae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola → Actinophytocola oryzae	2.56 %
Herbidospora galbida	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Herbidospora → Herbidospora galbida	0.85 %
Cryptosporangium arvum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium → Cryptosporangium arvum	0.85 %
Allokutzneria	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Allokutzneria	0.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_115667819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1527	Open in IMG/M
3300005434\|Ga0070709_11562954	Not Available	537	Open in IMG/M
3300005533\|Ga0070734_10434966	Not Available	748	Open in IMG/M
3300005713\|Ga0066905_100027348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3170	Open in IMG/M
3300005764\|Ga0066903_100045944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5238	Open in IMG/M
3300005764\|Ga0066903_100275327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2631	Open in IMG/M
3300005764\|Ga0066903_100703723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1782	Open in IMG/M
3300005764\|Ga0066903_100859174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1634	Open in IMG/M
3300005764\|Ga0066903_101128187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola → Actinophytocola oryzae	1448	Open in IMG/M
3300005764\|Ga0066903_102104970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1086	Open in IMG/M
3300005764\|Ga0066903_102914809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	928	Open in IMG/M
3300005764\|Ga0066903_106173721	Not Available	626	Open in IMG/M
3300005764\|Ga0066903_107727065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	553	Open in IMG/M
3300006028\|Ga0070717_10088935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium → Cryptosporangium arvum	2604	Open in IMG/M
3300006173\|Ga0070716_101250842	Not Available	598	Open in IMG/M
3300006175\|Ga0070712_101002767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	723	Open in IMG/M
3300006755\|Ga0079222_10088263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1589	Open in IMG/M
3300006804\|Ga0079221_10850959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	662	Open in IMG/M
3300006854\|Ga0075425_100187571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2376	Open in IMG/M
3300006854\|Ga0075425_100690942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1172	Open in IMG/M
3300009090\|Ga0099827_10411860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1156	Open in IMG/M
3300010043\|Ga0126380_10304785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1135	Open in IMG/M
3300010048\|Ga0126373_10344876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola → Actinophytocola oryzae	1499	Open in IMG/M
3300010048\|Ga0126373_10787483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1012	Open in IMG/M
3300010048\|Ga0126373_11022179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	892	Open in IMG/M
3300010048\|Ga0126373_12080467	Not Available	630	Open in IMG/M
3300010152\|Ga0126318_10148056	Not Available	738	Open in IMG/M
3300010154\|Ga0127503_11203792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1120	Open in IMG/M
3300010358\|Ga0126370_10014612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4341	Open in IMG/M
3300010358\|Ga0126370_10843365	Not Available	822	Open in IMG/M
3300010358\|Ga0126370_11610101	Not Available	622	Open in IMG/M
3300010360\|Ga0126372_10591968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1062	Open in IMG/M
3300010360\|Ga0126372_11585840	Not Available	693	Open in IMG/M
3300010360\|Ga0126372_12155325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	606	Open in IMG/M
3300010361\|Ga0126378_10554598	Not Available	1264	Open in IMG/M
3300010361\|Ga0126378_11016758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	932	Open in IMG/M
3300010361\|Ga0126378_11042234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	921	Open in IMG/M
3300010361\|Ga0126378_11377017	Not Available	798	Open in IMG/M
3300010366\|Ga0126379_11233137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	854	Open in IMG/M
3300010366\|Ga0126379_13411260	Not Available	532	Open in IMG/M
3300010376\|Ga0126381_100094388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3803	Open in IMG/M
3300010376\|Ga0126381_101632628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	931	Open in IMG/M
3300010376\|Ga0126381_102243160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Allokutzneria	785	Open in IMG/M
3300010376\|Ga0126381_103691135	Not Available	599	Open in IMG/M
3300010379\|Ga0136449_101442552	Not Available	1059	Open in IMG/M
3300010398\|Ga0126383_11088396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	889	Open in IMG/M
3300010398\|Ga0126383_12609604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	589	Open in IMG/M
3300010937\|Ga0137776_1382459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3749	Open in IMG/M
3300012096\|Ga0137389_11073140	Not Available	690	Open in IMG/M
3300012199\|Ga0137383_10798209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	689	Open in IMG/M
3300012207\|Ga0137381_10867433	Not Available	781	Open in IMG/M
3300012210\|Ga0137378_10634566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	979	Open in IMG/M
3300012210\|Ga0137378_11740316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	529	Open in IMG/M
3300012211\|Ga0137377_10644039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	995	Open in IMG/M
3300012363\|Ga0137390_11935284	Not Available	517	Open in IMG/M
3300012683\|Ga0137398_10319283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1047	Open in IMG/M
3300012924\|Ga0137413_11453604	Not Available	555	Open in IMG/M
3300012971\|Ga0126369_10228158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1817	Open in IMG/M
3300012971\|Ga0126369_11687402	Not Available	723	Open in IMG/M
3300016422\|Ga0182039_10857754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	809	Open in IMG/M
3300016445\|Ga0182038_11108526	Not Available	704	Open in IMG/M
3300016445\|Ga0182038_12162886	Not Available	505	Open in IMG/M
3300020199\|Ga0179592_10131677	Not Available	1147	Open in IMG/M
3300021407\|Ga0210383_11675548	Not Available	521	Open in IMG/M
3300021475\|Ga0210392_11094655	Not Available	597	Open in IMG/M
3300021478\|Ga0210402_10990691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	767	Open in IMG/M
3300021560\|Ga0126371_10253077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1876	Open in IMG/M
3300021560\|Ga0126371_10291120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1757	Open in IMG/M
3300021560\|Ga0126371_10394302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1525	Open in IMG/M
3300021560\|Ga0126371_11331818	Not Available	851	Open in IMG/M
3300021560\|Ga0126371_11458186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	814	Open in IMG/M
3300021560\|Ga0126371_11630460	Not Available	770	Open in IMG/M
3300021560\|Ga0126371_12280987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	654	Open in IMG/M
3300021560\|Ga0126371_12440695	Not Available	632	Open in IMG/M
3300021560\|Ga0126371_12516523	Not Available	623	Open in IMG/M
3300021560\|Ga0126371_13068987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	565	Open in IMG/M
3300022513\|Ga0242667_1020156	Not Available	693	Open in IMG/M
3300025898\|Ga0207692_10947907	Not Available	567	Open in IMG/M
3300025910\|Ga0207684_11112120	Not Available	657	Open in IMG/M
3300025922\|Ga0207646_10060758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola → Actinophytocola oryzae	3374	Open in IMG/M
3300026498\|Ga0257156_1050813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	853	Open in IMG/M
3300027725\|Ga0209178_1047884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1367	Open in IMG/M
3300027826\|Ga0209060_10419047	Not Available	609	Open in IMG/M
3300027889\|Ga0209380_10721417	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300027908\|Ga0209006_10789840	Not Available	770	Open in IMG/M
3300031231\|Ga0170824_122365499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	555	Open in IMG/M
3300031543\|Ga0318516_10001534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8961	Open in IMG/M
3300031543\|Ga0318516_10008759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4801	Open in IMG/M
3300031543\|Ga0318516_10205627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Herbidospora → Herbidospora galbida	1137	Open in IMG/M
3300031543\|Ga0318516_10255068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1014	Open in IMG/M
3300031544\|Ga0318534_10075291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1914	Open in IMG/M
3300031544\|Ga0318534_10644792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	600	Open in IMG/M
3300031545\|Ga0318541_10298729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	897	Open in IMG/M
3300031546\|Ga0318538_10271295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	912	Open in IMG/M
3300031549\|Ga0318571_10339552	Not Available	574	Open in IMG/M
3300031573\|Ga0310915_10163666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1544	Open in IMG/M
3300031668\|Ga0318542_10196806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1016	Open in IMG/M
3300031681\|Ga0318572_10078684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1828	Open in IMG/M
3300031713\|Ga0318496_10009705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4492	Open in IMG/M
3300031713\|Ga0318496_10529164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	652	Open in IMG/M
3300031736\|Ga0318501_10294767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	865	Open in IMG/M
3300031771\|Ga0318546_10459460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	892	Open in IMG/M
3300031782\|Ga0318552_10529017	Not Available	602	Open in IMG/M
3300031794\|Ga0318503_10109935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	878	Open in IMG/M
3300031795\|Ga0318557_10369179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	659	Open in IMG/M
3300031910\|Ga0306923_12471581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	513	Open in IMG/M
3300031947\|Ga0310909_10751196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	808	Open in IMG/M
3300031962\|Ga0307479_11505003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	630	Open in IMG/M
3300032009\|Ga0318563_10319156	Not Available	841	Open in IMG/M
3300032051\|Ga0318532_10157248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	807	Open in IMG/M
3300032160\|Ga0311301_12058970	Not Available	663	Open in IMG/M
3300032180\|Ga0307471_100040419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3729	Open in IMG/M
3300032205\|Ga0307472_100860973	Not Available	835	Open in IMG/M
3300032205\|Ga0307472_101954159	Not Available	586	Open in IMG/M
3300032261\|Ga0306920_102987333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	639	Open in IMG/M
3300032261\|Ga0306920_103556345	Not Available	575	Open in IMG/M
3300032805\|Ga0335078_10021966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9496	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.29%
Host-Associated	Host-Associated	1.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.73%
Aquatic	Environmental → Aquatic	2.56%
Plants	Host-Associated → Plants	1.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.73%
Freshwater	Environmental → Aquatic → Freshwater	1.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.71%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.63%
Loam	Environmental → Terrestrial → Soil → Loam	16.24%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.71%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.56%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.71%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	29.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.40%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.13%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.56%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.71%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.71%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.71%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.71%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022513	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1156678192	3300000956	Soil	MKWLMWALVAVAIALGLALLAGKSDLRRFQRMRRM*
Ga0070709_115629542	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLRWALVAVVVALGLALLAGKSDLRRFLRMRRMEEVGA
Ga0070734_104349662	3300005533	Surface Soil	MKLLRWALVALIVALGLALLAGKSDIRRYQRMRRM*
Ga0066905_1000273482	3300005713	Tropical Forest Soil	MKWLMWVLAAVAIAIGLALLAGKSDLRRFQRMRRM*
Ga0066903_1000459442	3300005764	Tropical Forest Soil	MKWLMWALLAVAIAIGLALLAGKSDLRRFQRMRRM*
Ga0066903_1002753273	3300005764	Tropical Forest Soil	MKWLMWALAVVAIAIGLALLAGKGDLRRFQRMRRM*
Ga0066903_1007037232	3300005764	Tropical Forest Soil	MKLLRWALVAVIVALGLALLVGQSDLRRFQRMRSM*
Ga0066903_1008591743	3300005764	Tropical Forest Soil	MKWLMWALLAVVIAIALVLLAGKSDLRRFQRMRRM*
Ga0066903_1011281872	3300005764	Tropical Forest Soil	MKLLRWALIAVVIALALVLLAGQGDLRRFQRMRRM*
Ga0066903_1021049701	3300005764	Tropical Forest Soil	MKWLMWALLAVAIAIGLFLLAGKSDLRRFQRMRRM*
Ga0066903_1029148092	3300005764	Tropical Forest Soil	MKWLMWALVAVAIAIGLALLVGQGDLRRFQRMRRM*
Ga0066903_1061737212	3300005764	Tropical Forest Soil	MKLLTWVLVAVVIALGLALLAGQSDLRRFQRMRRM*
Ga0066903_1077270651	3300005764	Tropical Forest Soil	MKWLMWALVAVAIAIGLALLAGQGDLRRFQRMRRM*
Ga0070717_100889353	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLRWTLVAVAVVLGLALLAGQGDIRRYRRMRRM*
Ga0070716_1012508421	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLRWALVVVTVALGLALLAGRSDLRRYQRMRRM*
Ga0070712_1010027672	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	DRQGALMKWLMWALLAVAIAIGLILLAGQGDLRRFQRMRRM*
Ga0079222_100882633	3300006755	Agricultural Soil	MKWLMWALLAVAIAIALVLLAGKSDLRRFQRMRRM*
Ga0079221_108509591	3300006804	Agricultural Soil	MKWLMWALLAVAIAIGLILLAGQGDLRRFQRMRRM*
Ga0075425_1001875712	3300006854	Populus Rhizosphere	MKWLMWALLAVAIAIGLALLAGQNDLRRFQRMRRM*
Ga0075425_1006909423	3300006854	Populus Rhizosphere	MKLLRWALVAVLVALGLALLAGQSDLRRFQRMRRM*
Ga0099827_104118603	3300009090	Vadose Zone Soil	MKWLGWALAALAIAIGVALLAGKSDLRRYRRMRRM*
Ga0126380_103047852	3300010043	Tropical Forest Soil	MKWLMWALLAVAIAIGLILLAGKGDLRRYQRMRRM*
Ga0126373_103448763	3300010048	Tropical Forest Soil	MKWLMWALVAVIIAIGLVLLAGKSDLSRFQRMRRM*
Ga0126373_107874832	3300010048	Tropical Forest Soil	MKWLMWALLAVAIAIGLALLAGQSDLRRFQRMRRM*
Ga0126373_110221792	3300010048	Tropical Forest Soil	MKWLMWALLAVAIAIGLVLLAGKSDLRRFQRMRRM*
Ga0126373_120804671	3300010048	Tropical Forest Soil	MKPLRWALVAVVIALGLALLAGQKDLRRFQRMRRL*
Ga0126318_101480561	3300010152	Soil	MKLLRWALVAVVIALALALLAGQSDIRRFQRMRRM*
Ga0127503_112037921	3300010154	Soil	SGANRQGARMKWLMWALLAVAIAIGLALLAGKSDIRRYQRMRRM*
Ga0126370_100146121	3300010358	Tropical Forest Soil	MKWLMWALAVVAIAIGLTLLAGKGDLRRFQRMRRM*
Ga0126370_108433653	3300010358	Tropical Forest Soil	MKLLRWALVAVIVALGLALLAGQSDLRRFQRMRRM*
Ga0126370_116101011	3300010358	Tropical Forest Soil	MKLLRWTLVAVIVALGLAFLAGQSDLRRFQRMRRKSRRAET
Ga0126372_105919681	3300010360	Tropical Forest Soil	MKWLLWVLVAVAIAIGLALLAGQGDLRRFQRMRRM*
Ga0126372_115858402	3300010360	Tropical Forest Soil	MKPLRWALVAVVIALGLALLAGQKDLRRFQRMRRM*
Ga0126372_121553252	3300010360	Tropical Forest Soil	MKWLMWALAAVVIAIGLALLAGKNDLRRFQRMRRM*
Ga0126378_105545981	3300010361	Tropical Forest Soil	MKWLGWVLVVLVIAIGSALLAGNGDLRRFQRMRRM*
Ga0126378_110167582	3300010361	Tropical Forest Soil	MKWLMWALVAVAIALALALLAGKGDLRRFQRMRRM*
Ga0126378_110422341	3300010361	Tropical Forest Soil	MKLLRWALIATIVVLGLALLAGQGDLRRFQRMRRM*
Ga0126378_113770171	3300010361	Tropical Forest Soil	MKLLIWVLVALIVALGLALLAGQSDLRRFQRMRRM*
Ga0126379_112331373	3300010366	Tropical Forest Soil	MKWLMWALVAVIIAIGLVLLAGKGDLSRFQRMRRM*
Ga0126379_134112601	3300010366	Tropical Forest Soil	MEHGMKWLMWALVAVAIAIGLALLAGQGDLRRFQRMRRM*
Ga0126381_1000943882	3300010376	Tropical Forest Soil	MKWLMWALLAVAIAIGLVLLAGKSDLRRYQRMRRM*
Ga0126381_1016326282	3300010376	Tropical Forest Soil	MKGLMWALLAVAIAIGLILLAGKVDLRRYQRMRRM*
Ga0126381_1022431601	3300010376	Tropical Forest Soil	MKLLRWTLIAVIVALGLALLAGKSDIRRYQRMRRM*
Ga0126381_1036911352	3300010376	Tropical Forest Soil	MKWLMWALLAVAIALGLVLLAGKSDLRRYQRMRRM*
Ga0136449_1014425523	3300010379	Peatlands Soil	MKLLRWALVAVVVALGLALLAGQSDLRRFQRMHRM*
Ga0126383_110883962	3300010398	Tropical Forest Soil	MKWLMWALAVVAIAIGLALLAGKGDLRRFQRMRRI*
Ga0126383_126096042	3300010398	Tropical Forest Soil	MKWLMWALLAVVIAIGLILLAGKGDLRRFQRMRRM*
Ga0137776_13824593	3300010937	Sediment	MKLLTWALIVLIVALGLALLAGKSDIRRYQRMRKM*
Ga0137389_110731401	3300012096	Vadose Zone Soil	MKLLRWALVAVIVGLGLALLAGQSDIRRYQRMRRM*
Ga0137383_107982091	3300012199	Vadose Zone Soil	MKLVRWALVAVAIIVVVALLAGKSDLRRFLRMRRM*
Ga0137381_108674331	3300012207	Vadose Zone Soil	MKLVRWALVAVAIIVLVALLAGKSDLRRFRRMRRM*
Ga0137378_106345661	3300012210	Vadose Zone Soil	MKLLRWTLVAVIVALGLALLAGQSDIRRYQRMRRM*
Ga0137378_117403162	3300012210	Vadose Zone Soil	MKLLRWTLVAVLVALGLALLAGKSDIRRYQRMRRM*
Ga0137377_106440391	3300012211	Vadose Zone Soil	MKWLMWALLAVAIAIGLALLAGKSDLRRYQRMRRM*
Ga0137390_119352841	3300012363	Vadose Zone Soil	MKLLRWTLVAVLVALGIALLAGKSDIRRYQRMRRM*
Ga0137398_103192832	3300012683	Vadose Zone Soil	MKLLRWALVAVIVGLGLALLAGKSDIRRYQRMRKM*
Ga0137413_114536042	3300012924	Vadose Zone Soil	MKLLRWALVAVIVALGLALLAGKSDIRRYQRMRKM*
Ga0126369_102281582	3300012971	Tropical Forest Soil	MKWLMWALLAVVIAIGLALLAGKSDLRRFQRMRRM*
Ga0126369_116874021	3300012971	Tropical Forest Soil	MKWLMWALVALAIAIGLALLAGQGDLRRFQRMRRM*
Ga0182039_108577542	3300016422	Soil	MKWLIWALLAVAIAIGLALLAGKSDFRHFQRMRRM
Ga0182038_111085261	3300016445	Soil	MKLLRWALVAVIEGLGLALLAGKSDIRRYQRMRRM
Ga0182038_121628861	3300016445	Soil	MKWLMWALLAVAIAIGLALLAGKSDFRRFQRMRRM
Ga0179592_101316771	3300020199	Vadose Zone Soil	MKLLRWALVAVIVALGLALLAGKSDIRRYQRMRRM
Ga0210383_116755481	3300021407	Soil	MKVLRWALVAVVIALGLALIAGKDDLRRYQRMRRM
Ga0210392_110946551	3300021475	Soil	MKLLRWVLVAVIVVLGLALLAGKSDLRRYQRMRRM
Ga0210402_109906912	3300021478	Soil	APMKWLMWALLAVTIAIGLALLAGKSDFRRFQRMRRM
Ga0126371_102530773	3300021560	Tropical Forest Soil	MKWLMWALLAVVIAIALVLLAGKSDLRRFQRMRRM
Ga0126371_102911202	3300021560	Tropical Forest Soil	MKLLRWALVAVIVALGLALLVGQSDLRRFQRMRSM
Ga0126371_103943022	3300021560	Tropical Forest Soil	MKWLMWALAVVAIAIGLALLAGKGDLRRFQRMRRM
Ga0126371_113318183	3300021560	Tropical Forest Soil	MKWLMWILAAIVIAIGLVLLAGKGDLQRFQRMRRM
Ga0126371_114581862	3300021560	Tropical Forest Soil	MKWLMWALLAVAIAIGLVLLAGKSDLRRFQRMRRM
Ga0126371_116304602	3300021560	Tropical Forest Soil	MKWLIWALVAVAVAIALGLALLAGKSDLQRFQRMRRM
Ga0126371_122809871	3300021560	Tropical Forest Soil	MKWLMWALLAVAIVIGLILLAGKGDLRRYQRMRRM
Ga0126371_124406951	3300021560	Tropical Forest Soil	MKWLMWALLAVAIALGLVLLAGKSDLRRYQRMRRM
Ga0126371_125165231	3300021560	Tropical Forest Soil	MKWLMWALLAVAIAIGLAVLAGQSDLRRFQRMRRM
Ga0126371_130689871	3300021560	Tropical Forest Soil	MKWLMWALLAVAIAIGLVLLAGKGDLRRFQRMRRM
Ga0242667_10201561	3300022513	Soil	MKPLGWTLVAVVIALGLALLTSQDDIRRYQRMRRM
Ga0207692_109479072	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MKLMRWVLVALVVALGLALLAGQSDIRRYQRMRRM
Ga0207684_111121202	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLRWALVAVAVVLGLALLAGQSDIRRYRRMRRM
Ga0207646_100607583	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLGWTLVAVAVVLGLALLAGQGDIRRYRRMRRM
Ga0257156_10508131	3300026498	Soil	MKWLMWALLAVAIAIGLALLAGKSDLRRYQRMRRM
Ga0209178_10478842	3300027725	Agricultural Soil	MKWLMWALLAVAIAIALVLLAGKSDLRRFQRMRRM
Ga0209060_104190471	3300027826	Surface Soil	MKLLRWALVALIVALGLALLAGKSDIRRYQRMRRM
Ga0209380_107214172	3300027889	Soil	PRGSRMKLLRWALVAVIVGLGLALLAGRSDIRRYQRMRRM
Ga0209006_107898402	3300027908	Forest Soil	MKLLRWALVAVVVGLGLALLAGKNDIRRYQRMRRM
Ga0170824_1223654991	3300031231	Forest Soil	RQGARMKWLMWALLAVAIAIGLALLAGKSDIRRYQRMRRM
Ga0318516_1000153411	3300031543	Soil	MKLLRWALVAVIIALGLAFLAGQSDLRRFQRMRRM
Ga0318516_100087593	3300031543	Soil	MKWLMWALVAVAIALGLALLAGKSDLQRFQRMRRM
Ga0318516_102056273	3300031543	Soil	MKLLRWALIAVVIALALVLLAGQGDLRRFQRMRRM
Ga0318516_102550682	3300031543	Soil	MKWLIWALLAVAIAIGLALLAGKSDFRRFQRMRRM
Ga0318534_100752912	3300031544	Soil	MKWLMWALLAVVIAIGLALLAGKSDFRRFQRMRRM
Ga0318534_106447922	3300031544	Soil	MKLLIWVLAAILIAVGLALLAGKGDLQRFQRMRRM
Ga0318541_102987291	3300031545	Soil	MKWLMWALVAVAIAIGLALLAGQSDLRRFQRMRRM
Ga0318538_102712951	3300031546	Soil	MKWLIWALLAVAIAVGLALLAGKSDFRRFQRMRRM
Ga0318571_103395521	3300031549	Soil	MKWLMWALLAVAIAIGLALLAGQSDLRRFQRMRRM
Ga0310915_101636662	3300031573	Soil	MKWLGWVLVVLVIAIGIALLAGNGDLRRFQRMRRM
Ga0318542_101968062	3300031668	Soil	MKWLMWALVAVVIAIGLALLAGKGDLQRFQRMRRM
Ga0318572_100786841	3300031681	Soil	RGSRMKLLRWALVAVIIALGLAFLAGQSDLRRFQRMRRM
Ga0318496_100097052	3300031713	Soil	MKLLRWALIAVVIALALVLLAGQGGLRRFQRMRRM
Ga0318496_105291641	3300031713	Soil	RQGAWMKWLMWALVAVAIAIGLALLAGQGDIRRYQRMRRM
Ga0318501_102947672	3300031736	Soil	MKLLRWALVALVIALGLALLAGKSDIRRYQRMRRM
Ga0318546_104594602	3300031771	Soil	MKWLMWALLAVAVAIGLILLAGQSDLRRFQRMRRM
Ga0318552_105290172	3300031782	Soil	RRRGSSMKLLRWALVALVIALGLALLAGKSDIRRYQRMRRM
Ga0318503_101099351	3300031794	Soil	GSRMKLLRWALIAVVIALALVLLAGQGDLRRFQRMRRM
Ga0318557_103691791	3300031795	Soil	RGHGMKWLMWALVAVAIAIGLALLAGQSDLRRFQRMRRM
Ga0306923_124715812	3300031910	Soil	MKWLMWALLAVAIAIGLVLLAGKSDLQRFQRMRRM
Ga0310909_107511962	3300031947	Soil	MKLLRWALVAVIIALGLALLAGQSDLRRFQRMRRM
Ga0307479_115050031	3300031962	Hardwood Forest Soil	MKWLMWALVAVAIAIGLALLAGKADLQRFQRMRRM
Ga0318563_103191562	3300032009	Soil	MKLLRWMLIAVVIALGLALLAGQSDLRRFQRMRRM
Ga0318532_101572482	3300032051	Soil	ATDRGHGMRWLMWALVAVAIAIGLALLAGQSDLRRFQRMRRM
Ga0311301_120589702	3300032160	Peatlands Soil	MKLLRWALVAVVVALGLALLAGQSDLRRFQRMHRM
Ga0307471_1000404192	3300032180	Hardwood Forest Soil	MKWLMWVLVTIAIAIGLALFAGKNDIRRYQRMRRM
Ga0307472_1008609732	3300032205	Hardwood Forest Soil	MKWLMWALVAVAIAIGLGLLAGQGDLRRFQRMRRM
Ga0307472_1019541591	3300032205	Hardwood Forest Soil	MKLLRWALVVVIVALGLALLAGRSDLRRYQRMRRM
Ga0306920_1029873332	3300032261	Soil	MKWLMWALVTVAIAIGLALLAGQGDIRRYQRMRRM
Ga0306920_1035563451	3300032261	Soil	MKLLRWALVAVIVGLGLALLAGKSDIRRYQRMRRM
Ga0335078_100219663	3300032805	Soil	MKWLIWALLAVALAVGVALLAGKGDIRRFQRMKRM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077651

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences