Metagenome Family F077589

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077589
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	41 residues
Representative Sequence	FGTFFDPQSTVAVAIPNVLFDHRTVTPAQPLSVYVGMRAKL
Number of Associated Samples	89
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.15 %
% of genes from short scaffolds (< 2000 bps)	92.31 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.581 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.949 % of family members)
Environment Ontology (ENVO)	Unclassified (31.624 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.410 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF13442	Cytochrome_CBB3	29.06
PF13570	PQQ_3	5.13
PF13505	OMP_b-brl	5.13
PF00756	Esterase	2.56
PF13557	Phenol_MetA_deg	2.56
PF00528	BPD_transp_1	0.85
PF07110	EthD	0.85
PF00005	ABC_tran	0.85
PF03992	ABM	0.85
PF07687	M20_dimer	0.85
PF00034	Cytochrom_C	0.85
PF13594	Obsolete Pfam Family	0.85
PF12951	PATR	0.85
PF04392	ABC_sub_bind	0.85
PF13531	SBP_bac_11	0.85
PF01011	PQQ	0.85
PF08238	Sel1	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.58 %
Unclassified	root	N/A	3.42 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.58 %
Unclassified	root	N/A	3.42 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.58 %
Unclassified	root	N/A	3.42 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	81.20 %
Unclassified	root	N/A	3.42 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	65.81 %
Unclassified	root	N/A	3.42 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	23.08 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	15.38 %
Unclassified	root	N/A	3.42 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.38 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	6.84 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.98 %
Unclassified	root	N/A	3.42 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.38 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	6.84 %
Unclassified	root	N/A	3.42 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	2.56 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.71 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.85 %
Azohydromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Azohydromonas	0.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.38 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	5.98 %
Unclassified	root	N/A	3.42 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	2.56 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.71 %
Azohydromonas australica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Azohydromonas → Azohydromonas australica	0.85 %
unclassified Afipia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia	0.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.38 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5.98 %
Unclassified	root	N/A	3.42 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	2.56 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.71 %
Afipia sp. OHSU_II-uncloned	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. OHSU_II-uncloned	0.85 %
Azohydromonas australica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Azohydromonas → Azohydromonas australica	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352025\|deepsgr__Contig_52477	All Organisms → cellular organisms → Bacteria → Proteobacteria	3134	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1027914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1049	Open in IMG/M
3300000787\|JGI11643J11755_11643829	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300000955\|JGI1027J12803_103689582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	513	Open in IMG/M
3300000956\|JGI10216J12902_116356527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	540	Open in IMG/M
3300001867\|JGI12627J18819_10138832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	993	Open in IMG/M
3300002911\|JGI25390J43892_10071981	All Organisms → cellular organisms → Bacteria → Proteobacteria	795	Open in IMG/M
3300005332\|Ga0066388_102263597	All Organisms → cellular organisms → Bacteria → Proteobacteria	982	Open in IMG/M
3300005332\|Ga0066388_102796575	All Organisms → cellular organisms → Bacteria → Proteobacteria	891	Open in IMG/M
3300005332\|Ga0066388_105341111	All Organisms → cellular organisms → Bacteria → Proteobacteria	651	Open in IMG/M
3300005436\|Ga0070713_101120719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	761	Open in IMG/M
3300005437\|Ga0070710_10011445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4382	Open in IMG/M
3300005468\|Ga0070707_100224425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1829	Open in IMG/M
3300005468\|Ga0070707_101643553	All Organisms → cellular organisms → Bacteria → Proteobacteria	609	Open in IMG/M
3300005553\|Ga0066695_10686498	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300005555\|Ga0066692_10633100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	668	Open in IMG/M
3300005764\|Ga0066903_100485367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2085	Open in IMG/M
3300005764\|Ga0066903_100823887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1664	Open in IMG/M
3300005764\|Ga0066903_101539999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1257	Open in IMG/M
3300005764\|Ga0066903_101703305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1200	Open in IMG/M
3300005764\|Ga0066903_101997718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Azohydromonas → Azohydromonas australica	1114	Open in IMG/M
3300005764\|Ga0066903_102793003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	947	Open in IMG/M
3300005764\|Ga0066903_103373429	All Organisms → cellular organisms → Bacteria → Proteobacteria	862	Open in IMG/M
3300005764\|Ga0066903_103828499	Not Available	808	Open in IMG/M
3300005764\|Ga0066903_106378195	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300005764\|Ga0066903_108890238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300006046\|Ga0066652_100976499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	805	Open in IMG/M
3300006175\|Ga0070712_100798924	All Organisms → cellular organisms → Bacteria → Proteobacteria	809	Open in IMG/M
3300006177\|Ga0075362_10688837	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300006845\|Ga0075421_101203711	All Organisms → cellular organisms → Bacteria → Proteobacteria	845	Open in IMG/M
3300006903\|Ga0075426_11539956	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300006904\|Ga0075424_100556080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1225	Open in IMG/M
3300006904\|Ga0075424_102446160	All Organisms → cellular organisms → Bacteria → Proteobacteria	547	Open in IMG/M
3300009081\|Ga0105098_10614708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300009143\|Ga0099792_10070335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1763	Open in IMG/M
3300009147\|Ga0114129_12762061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300009162\|Ga0075423_12725575	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300009162\|Ga0075423_13048624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300009792\|Ga0126374_10576993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	826	Open in IMG/M
3300009792\|Ga0126374_11392702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. OHSU_II-uncloned	571	Open in IMG/M
3300010360\|Ga0126372_11600548	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300010375\|Ga0105239_13551257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
3300010376\|Ga0126381_101939226	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300010398\|Ga0126383_10285999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1639	Open in IMG/M
3300010398\|Ga0126383_11093062	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300010398\|Ga0126383_11435867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	780	Open in IMG/M
3300012096\|Ga0137389_10118897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2126	Open in IMG/M
3300012200\|Ga0137382_10135332	Not Available	1659	Open in IMG/M
3300012202\|Ga0137363_11629815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	537	Open in IMG/M
3300012357\|Ga0137384_11456922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	533	Open in IMG/M
3300012469\|Ga0150984_106849517	Not Available	554	Open in IMG/M
3300012929\|Ga0137404_10424051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1177	Open in IMG/M
3300012951\|Ga0164300_10479161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	706	Open in IMG/M
3300012960\|Ga0164301_10618438	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300012971\|Ga0126369_11446981	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300012985\|Ga0164308_11253875	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300014745\|Ga0157377_10059416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2179	Open in IMG/M
3300015200\|Ga0173480_11019242	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300016270\|Ga0182036_10407367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1061	Open in IMG/M
3300016270\|Ga0182036_11073460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300016319\|Ga0182033_10714265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	878	Open in IMG/M
3300016319\|Ga0182033_11226295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	672	Open in IMG/M
3300016319\|Ga0182033_11769823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	560	Open in IMG/M
3300016341\|Ga0182035_10501703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1036	Open in IMG/M
3300016357\|Ga0182032_10241545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1399	Open in IMG/M
3300016371\|Ga0182034_10469149	All Organisms → cellular organisms → Bacteria → Proteobacteria	1045	Open in IMG/M
3300016371\|Ga0182034_10921960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	752	Open in IMG/M
3300016371\|Ga0182034_11384952	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300016404\|Ga0182037_10909111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	764	Open in IMG/M
3300016422\|Ga0182039_10305286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1320	Open in IMG/M
3300016445\|Ga0182038_12069563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516	Open in IMG/M
3300018482\|Ga0066669_10065879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2369	Open in IMG/M
3300021168\|Ga0210406_11286723	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300021178\|Ga0210408_10769874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	755	Open in IMG/M
3300021560\|Ga0126371_10625720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1225	Open in IMG/M
3300021560\|Ga0126371_11892911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	716	Open in IMG/M
3300021560\|Ga0126371_11908293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	713	Open in IMG/M
3300025906\|Ga0207699_10517445	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300025922\|Ga0207646_10350985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1333	Open in IMG/M
3300025922\|Ga0207646_11689141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300025922\|Ga0207646_11750040	Not Available	533	Open in IMG/M
3300025928\|Ga0207700_10512479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1062	Open in IMG/M
3300025928\|Ga0207700_11859849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300026309\|Ga0209055_1187523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	636	Open in IMG/M
3300026550\|Ga0209474_10277060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1011	Open in IMG/M
3300027875\|Ga0209283_10810724	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300028047\|Ga0209526_10414450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	892	Open in IMG/M
3300028715\|Ga0307313_10297558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300028722\|Ga0307319_10047850	All Organisms → cellular organisms → Bacteria → Proteobacteria	1340	Open in IMG/M
3300028784\|Ga0307282_10377111	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300028787\|Ga0307323_10313300	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300031544\|Ga0318534_10006173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5714	Open in IMG/M
3300031546\|Ga0318538_10303419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	860	Open in IMG/M
3300031572\|Ga0318515_10750487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300031668\|Ga0318542_10139054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1199	Open in IMG/M
3300031682\|Ga0318560_10503444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	656	Open in IMG/M
3300031736\|Ga0318501_10159609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1164	Open in IMG/M
3300031744\|Ga0306918_10113945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1947	Open in IMG/M
3300031770\|Ga0318521_10891759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	543	Open in IMG/M
3300031771\|Ga0318546_10330653	All Organisms → cellular organisms → Bacteria → Proteobacteria	1058	Open in IMG/M
3300031782\|Ga0318552_10103456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1406	Open in IMG/M
3300031782\|Ga0318552_10646752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	539	Open in IMG/M
3300031831\|Ga0318564_10021361	All Organisms → cellular organisms → Bacteria	2688	Open in IMG/M
3300031879\|Ga0306919_10699994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	780	Open in IMG/M
3300031941\|Ga0310912_11015098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	636	Open in IMG/M
3300031954\|Ga0306926_11133050	All Organisms → cellular organisms → Bacteria → Proteobacteria	923	Open in IMG/M
3300032025\|Ga0318507_10028417	All Organisms → cellular organisms → Bacteria → Proteobacteria	2062	Open in IMG/M
3300032041\|Ga0318549_10243132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	809	Open in IMG/M
3300032044\|Ga0318558_10122373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1234	Open in IMG/M
3300032076\|Ga0306924_11818120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	634	Open in IMG/M
3300032090\|Ga0318518_10725011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	505	Open in IMG/M
3300032091\|Ga0318577_10139590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1150	Open in IMG/M
3300032094\|Ga0318540_10339886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	725	Open in IMG/M
3300032174\|Ga0307470_10127915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1513	Open in IMG/M
3300032180\|Ga0307471_103489954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300032261\|Ga0306920_104045183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	531	Open in IMG/M
3300033289\|Ga0310914_10787229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	849	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.60%
Host-Associated	Host-Associated	9.40%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.74%
Plants	Host-Associated → Plants	9.40%
Aquatic	Environmental → Aquatic	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.55%
Freshwater	Environmental → Aquatic → Freshwater	0.85%
Roots	Host-Associated → Plants → Roots	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.52%
Loam	Environmental → Terrestrial → Soil → Loam	22.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.69%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.85%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.69%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.38%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.11%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.40%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.71%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.71%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.85%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deepsgr_00589030	2199352025	Soil	TYFDPQSVINAVANPPTDHRTVTPAQPLSVYVGLRAKL
AF_2010_repII_A100DRAFT_10279142	3300000655	Forest Soil	TFFDPQSTVALAIPNVLFDHRMVTPAQPXSVYVGMRAKL*
JGI11643J11755_116438292	3300000787	Soil	YFDPQSVINAVSNPPTDHRTVTPAQPLSVYVGLRAKL*
JGI1027J12803_1036895821	3300000955	Soil	FGTFFDTQSTVAVAIPNVLTDPRMVTPAQPLSVYVGMRAKL*
JGI10216J12902_1163565272	3300000956	Soil	FFDTQSTVAIAIPNVLTDPRMVTPAQPLSVYVGMRAKL*
JGI12627J18819_101388321	3300001867	Forest Soil	DTQSTVAVAIPNVLNDPRTVTPAQPLSVYVGMRAKL*
JGI25390J43892_100719811	3300002911	Grasslands Soil	ATFGTFFDPQSTVAVAIPNVLFDHRTVTPAQPLSVYVGMRAKL*
Ga0066388_1022635973	3300005332	Tropical Forest Soil	NRKFATFGTFFDPQSTVAIAIPNVLFDHRTVTPAQPLSVYVGMRAKL*
Ga0066388_1027965752	3300005332	Tropical Forest Soil	MFNRKFATFGTFFNTQSTVAIAIPNVLTDPRMVTPAQPLSVYVGMRAN*
Ga0066388_1053411111	3300005332	Tropical Forest Soil	FNRKFATFGTFFDPQSTVALAIPNVLFDHRMVTPAQPLSVYVGVRAKL*
Ga0070713_1011207193	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	RKFATFGTFFDPQSTVANALPGILNDHRTVTPAQPLSVYVGMRAKL*
Ga0070710_100114456	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	GTFFDTQSTVAVAIPNVLNDPRTVTPAQPLSVYVGMRAKL*
Ga0070707_1002244251	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	FGTFFDPQSTVAVAIPNVLFDHRTVTPAQPLSVYVGMRAKL*
Ga0070707_1016435532	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LFNRKFATFGTFFDPQSTVAVAIPNVLFDHRTVTPAQPLSVYVGMRAKL*
Ga0066695_106864982	3300005553	Soil	TFGTFFDPQSTVANAIPNVLFDHRTVTPAQPLSVYVGMRAKL*
Ga0066692_106331002	3300005555	Soil	FDPQSTVAIAIPNVLFDHRTVTPAQPLSVYVGLRAKL*
Ga0066903_1004853676	3300005764	Tropical Forest Soil	TFFDTHSTVAIAIPNVLNDPRMVTPAQPLSVYVGMRAKL*
Ga0066903_1008238873	3300005764	Tropical Forest Soil	TFFDTQSTVANAIPNALSDPRMVTPVQPLSVYVGLRVKL*
Ga0066903_1015399992	3300005764	Tropical Forest Soil	ATFGTFFDTHSTVAIAIPNVLTDPRTVTPAQPLSVYVGMHARL*
Ga0066903_1017033053	3300005764	Tropical Forest Soil	HSTVAIAIPNVLNDPRMVTPAQPLSVYVGMRAKL*
Ga0066903_1019977181	3300005764	Tropical Forest Soil	GTFFDTQSTVAIAIPNVLTDPRMVTPAQPLSVYVGMRAKL*
Ga0066903_1027930032	3300005764	Tropical Forest Soil	FATFGTFFDPQSTVALAIPNVLFDHRTITPAQPLSVYVGIHAKL*
Ga0066903_1033734293	3300005764	Tropical Forest Soil	NNLFNRKFATFGTFFDPQSTVAIAIPNVLFDHRTVTPAQPFSVYVGMRAKL*
Ga0066903_1038284991	3300005764	Tropical Forest Soil	TQSTVAVAIPNVLNDPRMVTPAQPLSVYLGMRAKL*
Ga0066903_1063781951	3300005764	Tropical Forest Soil	FFDPQSTVALAIPNVLFDHRMVTPAQPLSVYVGVRAKL*
Ga0066903_1088902382	3300005764	Tropical Forest Soil	FATFGTFFDPQSTVALAIPNVLFDHRTITPAQPLSVYVGMHAKL*
Ga0066652_1009764991	3300006046	Soil	VYGTYFEPQSIVNAIANPPTDQRTQTPAQPLSVYAGLRYKLP*
Ga0070712_1007989244	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	TFFDTQSTVAVAIPNVLNDPRTVTPAQPLSVYVGMRAKL*
Ga0075362_106888372	3300006177	Populus Endosphere	YFDAGSIANVLPNPPTDHRTITPAQPLSIYVGMRAKL*
Ga0075421_1012037111	3300006845	Populus Rhizosphere	ATFGTYFDAGSIANVLPNPPTDPRTITPAQPLSVYVGMRAKL*
Ga0075426_115399562	3300006903	Populus Rhizosphere	FFDTQSTVAVAIPNVLNDPRMVTPAQPLSVYVGMRAKL*
Ga0075424_1005560803	3300006904	Populus Rhizosphere	TFGTFFDTQSTVAVAIPNVLNDPRTVTPAQPLSVYVGMRAKL*
Ga0075424_1024461601	3300006904	Populus Rhizosphere	ATFGTFFDTQSTVAVAIPNVLNDPRTVTPAQPLSVYVGMRAKL*
Ga0105098_106147082	3300009081	Freshwater Sediment	YFDPQSIVNAIPNPPTDHRTITPAQPLSVYVGMRAKL*
Ga0099792_100703354	3300009143	Vadose Zone Soil	TFGTFFDPQSTVAVAIPNVLFDHRMVTPAQPLSVYLGLRAKL*
Ga0114129_127620612	3300009147	Populus Rhizosphere	FFDPQSTVANALPGVLNDPRTVTPAQPLSVYVGMRAKL*
Ga0075423_127255752	3300009162	Populus Rhizosphere	QSTVAVAIPNVLFDHRTVTPAQPLSVYVGMRAKL*
Ga0075423_130486241	3300009162	Populus Rhizosphere	TFGTFFDTQSTVAIAIPNVLTDPRMVTPAQPLSVYVGMRAKL*
Ga0126374_105769931	3300009792	Tropical Forest Soil	PQSTVALAIPNVLFDHRTVTPAQPLSIYVGLRAKL*
Ga0126374_113927021	3300009792	Tropical Forest Soil	NNLFNRKFATFGTFFNPQSTVAIAIPNVLEDHRTVTPAQPLSVYVGMRAKF*
Ga0126372_116005481	3300010360	Tropical Forest Soil	PQSTVAIAIPNVLFDHRTVTPAQPLSVYVGMRAKL*
Ga0105239_135512571	3300010375	Corn Rhizosphere	GTFFDPQSTVALAVPNVLFDHRMVTPAQPLSVYVGMRAKL*
Ga0126381_1019392261	3300010376	Tropical Forest Soil	NNLFNRKFATFGTFFDPQSTVANAIPNVLFDHRMVTPAQPLSVYVGMRAKL*
Ga0126383_102859992	3300010398	Tropical Forest Soil	ATIGTFFDTQSTVAIAIPNVLNDPRMVTPAQPLSVYVGMRAKL*
Ga0126383_110930623	3300010398	Tropical Forest Soil	TFFDPQSTVALAIPNVLFDHRTITPAQPLSVYVGMRAKL*
Ga0126383_114358672	3300010398	Tropical Forest Soil	KFATIGTFFDTQSTVAIAIPNVLNDPRMVTPAQPLSVYVGMRAKL*
Ga0137389_101188973	3300012096	Vadose Zone Soil	FFDPQSTVAVAIPNVLFDHRTVTPAQPLSIYVGMRAKL*
Ga0137382_101353323	3300012200	Vadose Zone Soil	TFFDTQSTVAVAIPNVLFDHRTVTPAQPLSIYVSLRAKL*
Ga0137363_116298152	3300012202	Vadose Zone Soil	PQVIANAIPDPPSDHRMVTPAQPLSIYVGLRAKL*
Ga0137384_114569222	3300012357	Vadose Zone Soil	DPRVIANAIPDPPTDHRMVTPAQPLSIYVGLRAKL*
Ga0150984_1068495171	3300012469	Avena Fatua Rhizosphere	ESIVNAIASPPTDHRTQTPAQPLAVYAGLRYRLP*
Ga0137404_104240511	3300012929	Vadose Zone Soil	YFDPQVIANAISNPPTDHRMVTPAQPLAVYVGLRAKL*
Ga0164300_104791612	3300012951	Soil	FGKFSYSQSLCAVAIGNVLCVQRTITPAQPLSNYVGMHAKL*
Ga0164301_106184381	3300012960	Soil	PQSVINAVSNPPTDHRTITPAQPLAVYVGLRAKL*
Ga0126369_114469813	3300012971	Tropical Forest Soil	TSGTFFDPQSTVALAIPNVLNDHRMITPAQPLAIYVGLRAKL*
Ga0164308_112538751	3300012985	Soil	PQSVINAVSNPPTDHRTITPAQPLAVYMGLRVKL*
Ga0157377_100594163	3300014745	Miscanthus Rhizosphere	FDPQSVINAVSNPPTDHRTITPAQPLSVYMGLRVKL*
Ga0173480_110192421	3300015200	Soil	TYFDPQSVINAVSNPPTDHRTITPAQPLAVYVCLRAKL*
Ga0182036_104073671	3300016270	Soil	NNLFNRKFATFGTFFDPQSTVAIAIPNVLFDHRTVTPAQPLSVYVGMRAKL
Ga0182036_110734601	3300016270	Soil	TFFNPQSTVAIAIPNVLEDHRTVTPAQPLSVYVGMRAKL
Ga0182033_107142651	3300016319	Soil	KFATFGTFFDSQSTGALAIPNVVFDHRTVTPAQPLSVYVGMHAKL
Ga0182033_112262952	3300016319	Soil	FATFGTFFDPQSTVALAIPNVLSDHRTITPAQPLSVYVGIHAKL
Ga0182033_117698231	3300016319	Soil	TFGTFFDPQSTVALAIPNVLSDHRTITPAQPLSVYVGMHAKL
Ga0182035_105017031	3300016341	Soil	FATFGTFFNPQSTVAIAIPNVLEDHRTVTPAQPLSVYVGMRAKF
Ga0182032_102415452	3300016357	Soil	FNPQSTVAIAIPNVLEDHRTVTPAQPLSVYVGMRAKF
Ga0182034_104691491	3300016371	Soil	TFFDPQSTVAIAIPNVLFDHRTVTPAQPLSVYVGMRAKL
Ga0182034_109219602	3300016371	Soil	PQSTVAIAIPNTLFDHRTITPAQPLSVYVGMHAKL
Ga0182034_113849522	3300016371	Soil	FDPQSTVAVAIPNVLFDHRTVTPAQPLSVYVGMRAKL
Ga0182037_109091112	3300016404	Soil	FNRKFATFGTFFDPQSTVANAIPNVLFDHRTVTPAQPLSVYVGMRAKL
Ga0182039_103052861	3300016422	Soil	RKFATFGTFFNPQSTVAIAIPNVLEDHRTVTPAQPLSVYVGMRAKL
Ga0182038_120695632	3300016445	Soil	FDPQSTVALAIPNVLFDHRTVTPAQPLSVYVGMRAKL
Ga0066669_100658793	3300018482	Grasslands Soil	NRKFASVGTFFDTQSTVAVAIPNVLTDPRMVTPAQPLSVYVGMRAKL
Ga0210406_112867232	3300021168	Soil	FDPQSTVAVAIPNTLFDHRTVTPAQPLSVYVGMRAKL
Ga0210408_107698741	3300021178	Soil	KFATFGTFFDPQSTVAIAIPNVLFDHRTVTPAQPLSVYVGMRAKL
Ga0126371_106257201	3300021560	Tropical Forest Soil	NRKFATFGTFFNPQSTVAIAIPNVLEDHRMVTPAQPLSVYVGMRAKL
Ga0126371_118929111	3300021560	Tropical Forest Soil	FGTFFDPQSTVAIAIPNVLFDHRTVTPAQPLSVYLGMRAKL
Ga0126371_119082933	3300021560	Tropical Forest Soil	RKFATFGTFFNPQSTVALAIPNVLFDHRMVTPAQPLSVYVGMRAKL
Ga0207699_105174451	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	NRKFATVGTFFDTQSTVAVAIPNVLNDPRMVTPAQPLSVYLGMRAKL
Ga0207646_103509851	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	NRKFATFGTFFDPQSTVAVAIPNVLFDHRTVTPAQPLSVYVGMRAKL
Ga0207646_116891411	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	TFFDPQSTVAVAIPNVLFDHRTVTPAQPLSVYVGMRAKL
Ga0207646_117500402	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	TYFDPQSVINAVSNPPTDHRTITPAQPLSVYMGLRVKL
Ga0207700_105124793	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	KFATFGTFFDTQSTVAVAIPNVLNDPRTVTPAQPLSVYVGMRAKL
Ga0207700_118598491	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	NRKFATFGTFFDPQSTVANALPNVLFDHRTVTPAQPLSVYVGMRAKL
Ga0209055_11875231	3300026309	Soil	FNRKFATFGTFFDPQSTVAVAIPNVLFDHRTVTPAQPLSVYVGMRAKL
Ga0209474_102770601	3300026550	Soil	TQSTVAIAIPNVLTDPRMVTPAQPLSVYVGMRAKL
Ga0209283_108107241	3300027875	Vadose Zone Soil	DPQSTVAVAIPNVLFDHRTVTPAQPLSIYVGMRAKL
Ga0209526_104144501	3300028047	Forest Soil	LFNRKFATFGTFFDPQSTVAVAIPNTLFDHRTVTPAQPLSVYVGMRAKL
Ga0307313_102975581	3300028715	Soil	VGTFFDTQSTVAVAIPNVLNDPRMVTPAQPLSVYVGMRAKL
Ga0307319_100478501	3300028722	Soil	FDPQSVINAVSNPPTDHRTVTPAQPLSVYVGLRAKL
Ga0307282_103771113	3300028784	Soil	KFATFGTFFDTQSTVAVAIPNVLTDPRMVTPAQPLSVYVGMRAKL
Ga0307323_103133002	3300028787	Soil	TFGTFFDTQSTVAVAIPNVLTDPRMVTPAQPLSVYVGMRAKL
Ga0318534_100061737	3300031544	Soil	DPQSTVANAIPNVLFDHRTVTPAQPLSVYVGMRAKL
Ga0318538_103034191	3300031546	Soil	NPQSTVAIAIPNVLEDHRTVTPAQPLSVYVGMRAKF
Ga0318515_107504871	3300031572	Soil	FGTFFNPQSTVAIAIPNVLEDHRTVTPAQPLSVYVGMRAKF
Ga0318542_101390541	3300031668	Soil	TFGTFFDPQSTVALAIPNVLSDHRTITPAQPLSVYVGIHAKL
Ga0318560_105034441	3300031682	Soil	FNPQVIANAIPDPPTDHRMVTPTQPLSIYVGLRAKL
Ga0318501_101596091	3300031736	Soil	RKFATFGTFFDPQSTVAIAIPNVLFDHRMVTPAQPLSVYVGMRAKL
Ga0306918_101139453	3300031744	Soil	KFATFGTFFNPQSTVAIAIPNVLEDHRTVTPAQPLSVYVGMRAKF
Ga0318521_108917592	3300031770	Soil	ATFGTFFNPQSTVAIAIPNVLEDHRTVTPAQPLSVYVGMRAKL
Ga0318546_103306531	3300031771	Soil	FDTQSTVAIAIPNVLTNPRMVTPAQPLSVYVGMRAKL
Ga0318552_101034562	3300031782	Soil	TFFNPQSTVAIAIPNVLEDHRTVTPAQPLSVYVGMRAKF
Ga0318552_106467522	3300031782	Soil	FGTFFNPQSTVAIAIPNVLEDHRTVTPAQPLSVYVGMRAKL
Ga0318564_100213614	3300031831	Soil	FDPQSTVANAIPNVLFDHRTVTPAQPLSVYVGMRAKL
Ga0306919_106999941	3300031879	Soil	NNLFNRKFATFGTFFNPQSTVAIAIPNVLEDHRMVTPAQPLSVYVGIHAKL
Ga0310912_110150982	3300031941	Soil	FFDTHSTVAIAIPNVLTDPRMVTPAQPLSVYVGMRAKL
Ga0306926_111330503	3300031954	Soil	TFFDPQSTVAVAIPNTLFDHRTVTPAQPLSIYIGMRAKL
Ga0318507_100284173	3300032025	Soil	FFDPQSTVANAIPNVLFDHRTVTPAQPLSVYVGMRAKL
Ga0318549_102431321	3300032041	Soil	KFATFGTFFDPQSTVAVAIPNVLFDHRTVTPAQPLSVYVGMRAKL
Ga0318558_101223731	3300032044	Soil	NLFNRKFATFGTFFDPQSTVAIAIPNVLFDHRMVTPAQPLSVYVGMRAKL
Ga0306924_118181201	3300032076	Soil	TFGTFFNPQSTVAIAIPNVLEDHRMVTPAQPLSVYVGIHAKL
Ga0318518_107250112	3300032090	Soil	FATFGTFFNPQSTVAIAIPNVLEDHRTVTPAQPLSVYVGMRAKL
Ga0318577_101395902	3300032091	Soil	FDPQSTVAVAIPNVLFDHRTITPAQPLSVYVGMHAKL
Ga0318540_103398861	3300032094	Soil	FNRKFATFGTFFDPQSTVALAIPNVLFDHRTITPAQPLSVYVGMHAKL
Ga0307470_101279151	3300032174	Hardwood Forest Soil	TFGTFFDTQSTVAVAIPNVLNDPRTVTPAQPLSVYVGMRAKL
Ga0307471_1034899541	3300032180	Hardwood Forest Soil	KFATFGTFYDTQSTIAVAIPNVLNDPRTVTPAQPLSVYVGMRAKL
Ga0306920_1040451831	3300032261	Soil	KFATFGTFFNPQSTVAIAIPNVLEDHRTVTPAQPLSVYVGMRAKL
Ga0310914_107872291	3300033289	Soil	KFATFGTFFDTHSTVAIAIPNVLTDPRMVTPAQPLSVYVGMRAKL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F077589

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences