Metagenome / Metatranscriptome Family F077582

Basic Information
Family ID	F077582
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	41 residues
Representative Sequence	MWTSAGQGEGSPIAFYERYGFEQTGEIVFDDEVLLRLELR
Number of Associated Samples	107
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.34 %
% of genes near scaffold ends (potentially truncated)	73.50 %
% of genes from short scaffolds (< 2000 bps)	88.03 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Most Common Taxonomy
Group	Bacteria (91.453 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.367 % of family members)
Environment Ontology (ENVO)	Unclassified (29.915 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.299 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.82% β-sheet: 25.00% Coil/Unstructured: 66.18%
Feature Viewer

Powered by Feature Viewer

SCOP family	SCOP domain	Representative PDB	TM-score
d.108.1.0: automated matches	d2vi7a_	2vi7	0.73325
d.108.1.0: automated matches	d6e1xa_	6e1x	0.73188
d.108.1.1: N-acetyl transferase, NAT	d1mk4a1	1mk4	0.72957
d.108.1.1: N-acetyl transferase, NAT	d1u6ma1	1u6m	0.72931
d.108.1.1: N-acetyl transferase, NAT	d1cjwa_	1cjw	0.72865

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF01939	NucS	11.97
PF10604	Polyketide_cyc2	4.27
PF07883	Cupin_2	3.42
PF00583	Acetyltransf_1	3.42
PF06224	HTH_42	2.56
PF12680	SnoaL_2	2.56
PF01243	Putative_PNPOx	2.56
PF01872	RibD_C	2.56
PF08818	DUF1801	1.71
PF00768	Peptidase_S11	1.71
PF05988	DUF899	1.71
PF02080	TrkA_C	1.71
PF03062	MBOAT	1.71
PF08281	Sigma70_r4_2	1.71
PF00102	Y_phosphatase	0.85
PF01494	FAD_binding_3	0.85
PF05147	LANC_like	0.85
PF03992	ABM	0.85
PF01408	GFO_IDH_MocA	0.85
PF01808	AICARFT_IMPCHas	0.85
PF00296	Bac_luciferase	0.85
PF01012	ETF	0.85
PF08529	NusA_N	0.85
PF00016	RuBisCO_large	0.85
PF00753	Lactamase_B	0.85
PF12697	Abhydrolase_6	0.85
PF02254	TrkA_N	0.85
PF03073	TspO_MBR	0.85
PF06445	GyrI-like	0.85
PF13302	Acetyltransf_3	0.85
PF04107	GCS2	0.85
PF13565	HTH_32	0.85
PF01738	DLH	0.85
PF01636	APH	0.85
PF00903	Glyoxalase	0.85
PF03167	UDG	0.85
PF09371	Tex_N	0.85
PF00491	Arginase	0.85
PF04075	F420H2_quin_red	0.85
PF12802	MarR_2	0.85
PF03551	PadR	0.85
PF14437	MafB19-deam	0.85
PF00072	Response_reg	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG1637	Endonuclease NucS, RecB family	Replication, recombination and repair [L]	11.97
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	2.56
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	2.56
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	2.56
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	1.71
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.71
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	1.71
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	1.71
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.71
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	1.71
COG4403	Lantibiotic modifying enzyme	Defense mechanisms [V]	0.85
COG5599	Protein tyrosine phosphatase	Signal transduction mechanisms [T]	0.85
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.85
COG3476	Tryptophan-rich sensory protein TspO/CrtK (mitochondrial benzodiazepine receptor homolog)	Signal transduction mechanisms [T]	0.85
COG2453	Protein-tyrosine phosphatase	Signal transduction mechanisms [T]	0.85
COG1850	Ribulose 1,5-bisphosphate carboxylase, large subunit, or a RuBisCO-like protein	Carbohydrate transport and metabolism [G]	0.85
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.85
COG2086	Electron transfer flavoprotein, alpha and beta subunits	Energy production and conversion [C]	0.85
COG2025	Electron transfer flavoprotein, alpha subunit FixB	Energy production and conversion [C]	0.85
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.85
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.85
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.85
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.85
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.85
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.85
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.85
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.85
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.85
COG0138	AICAR transformylase/IMP cyclohydrolase PurH	Nucleotide transport and metabolism [F]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.45 %
Unclassified	root	N/A	8.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.45 %
Unclassified	root	N/A	8.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.45 %
Unclassified	root	N/A	8.55 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	73.50 %
Unclassified	root	N/A	8.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	69.23 %
Unclassified	root	N/A	8.55 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	33.33 %
Unclassified	root	N/A	8.55 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.85 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	14.53 %
Unclassified	root	N/A	8.55 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.56 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.71 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.85 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.85 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.85 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.85 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.53 %
Unclassified	root	N/A	8.55 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.56 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.71 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.85 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.85 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.85 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.53 %
Unclassified	root	N/A	8.55 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.56 %
Acrocarpospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora	1.71 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.85 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.85 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.85 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.85 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.53 %
Unclassified	root	N/A	8.55 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.56 %
Acrocarpospora corrugata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora corrugata	1.71 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.85 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.85 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.85 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.85 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.53 %
Unclassified	root	N/A	8.55 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.56 %
Acrocarpospora corrugata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora corrugata	1.71 %
Streptomyces sp. W007	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. W007	0.85 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.85 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.85 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.85 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000890\|JGI11643J12802_11889240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. W007	539	Open in IMG/M
3300000891\|JGI10214J12806_12066684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	610	Open in IMG/M
3300000956\|JGI10216J12902_106869261	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300000956\|JGI10216J12902_117515969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	642	Open in IMG/M
3300004114\|Ga0062593_100341531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1303	Open in IMG/M
3300004114\|Ga0062593_101001110	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300004114\|Ga0062593_101166916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	805	Open in IMG/M
3300004479\|Ga0062595_101097353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	695	Open in IMG/M
3300004480\|Ga0062592_101704259	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005169\|Ga0066810_10015522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1200	Open in IMG/M
3300005335\|Ga0070666_10420216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	963	Open in IMG/M
3300005338\|Ga0068868_100112333	All Organisms → cellular organisms → Bacteria	2215	Open in IMG/M
3300005356\|Ga0070674_102136410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	511	Open in IMG/M
3300005454\|Ga0066687_10272481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	951	Open in IMG/M
3300005530\|Ga0070679_101993681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	529	Open in IMG/M
3300005547\|Ga0070693_100114253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1665	Open in IMG/M
3300005553\|Ga0066695_10797428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	545	Open in IMG/M
3300005559\|Ga0066700_10509238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	840	Open in IMG/M
3300005718\|Ga0068866_11263475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300005886\|Ga0075286_1011902	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300005937\|Ga0081455_10437704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	897	Open in IMG/M
3300006175\|Ga0070712_101244947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	648	Open in IMG/M
3300006178\|Ga0075367_10040001	All Organisms → cellular organisms → Bacteria → Proteobacteria	2737	Open in IMG/M
3300006574\|Ga0074056_11850940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1500	Open in IMG/M
3300006580\|Ga0074049_12696920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	505	Open in IMG/M
3300006581\|Ga0074048_12117099	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300006845\|Ga0075421_100447600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1544	Open in IMG/M
3300006845\|Ga0075421_100777094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1105	Open in IMG/M
3300006871\|Ga0075434_101288058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	742	Open in IMG/M
3300007076\|Ga0075435_100958528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	747	Open in IMG/M
3300009012\|Ga0066710_103229667	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300009094\|Ga0111539_11379272	Not Available	818	Open in IMG/M
3300010045\|Ga0126311_10883893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	725	Open in IMG/M
3300010045\|Ga0126311_11106291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	652	Open in IMG/M
3300010325\|Ga0134064_10152117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	801	Open in IMG/M
3300010336\|Ga0134071_10141588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1165	Open in IMG/M
3300010371\|Ga0134125_10060790	All Organisms → cellular organisms → Bacteria	4203	Open in IMG/M
3300010400\|Ga0134122_10150015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1895	Open in IMG/M
3300010403\|Ga0134123_10659419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1016	Open in IMG/M
3300010403\|Ga0134123_10817675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	927	Open in IMG/M
3300012043\|Ga0136631_10012400	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2997	Open in IMG/M
3300012092\|Ga0136621_1094183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1218	Open in IMG/M
3300012201\|Ga0137365_10743151	Not Available	717	Open in IMG/M
3300012201\|Ga0137365_11013980	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300012208\|Ga0137376_11447296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300012355\|Ga0137369_10054770	All Organisms → cellular organisms → Bacteria	3467	Open in IMG/M
3300012356\|Ga0137371_11100980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	597	Open in IMG/M
3300012358\|Ga0137368_10670707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	654	Open in IMG/M
3300012668\|Ga0157216_10511749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300012679\|Ga0136616_10035586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2432	Open in IMG/M
3300012684\|Ga0136614_11168001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
3300012897\|Ga0157285_10025251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1298	Open in IMG/M
3300012902\|Ga0157291_10122492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	738	Open in IMG/M
3300012908\|Ga0157286_10158238	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300012955\|Ga0164298_10518749	Not Available	800	Open in IMG/M
3300012957\|Ga0164303_10668672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	695	Open in IMG/M
3300012957\|Ga0164303_10747646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	665	Open in IMG/M
3300012958\|Ga0164299_10980650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	621	Open in IMG/M
3300012985\|Ga0164308_11314342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	657	Open in IMG/M
3300012988\|Ga0164306_10209992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1372	Open in IMG/M
3300013102\|Ga0157371_10933809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	659	Open in IMG/M
3300013307\|Ga0157372_10767650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1121	Open in IMG/M
3300014322\|Ga0075355_1153178	All Organisms → cellular organisms → Bacteria → Terrabacteria group	613	Open in IMG/M
3300014326\|Ga0157380_11632741	Not Available	701	Open in IMG/M
3300014326\|Ga0157380_13484003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300015373\|Ga0132257_104093336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	530	Open in IMG/M
3300016445\|Ga0182038_11584943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora corrugata	589	Open in IMG/M
3300017965\|Ga0190266_10225953	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300018027\|Ga0184605_10381402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	633	Open in IMG/M
3300018054\|Ga0184621_10183083	Not Available	752	Open in IMG/M
3300018066\|Ga0184617_1049699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1062	Open in IMG/M
3300018079\|Ga0184627_10214935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1015	Open in IMG/M
3300018429\|Ga0190272_11523725	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300018431\|Ga0066655_10575220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	756	Open in IMG/M
3300018481\|Ga0190271_10329088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1601	Open in IMG/M
3300019890\|Ga0193728_1036421	All Organisms → cellular organisms → Bacteria	2432	Open in IMG/M
3300025885\|Ga0207653_10280841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	643	Open in IMG/M
3300025905\|Ga0207685_10099285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1242	Open in IMG/M
3300025912\|Ga0207707_10253490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1528	Open in IMG/M
3300025913\|Ga0207695_10607027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	975	Open in IMG/M
3300025915\|Ga0207693_10488626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	961	Open in IMG/M
3300025916\|Ga0207663_10090167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2032	Open in IMG/M
3300025926\|Ga0207659_10342305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1239	Open in IMG/M
3300025933\|Ga0207706_10359557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1265	Open in IMG/M
3300025934\|Ga0207686_10386436	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300025935\|Ga0207709_10237505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1324	Open in IMG/M
3300025949\|Ga0207667_10028175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6102	Open in IMG/M
3300025972\|Ga0207668_12156315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	501	Open in IMG/M
3300026023\|Ga0207677_12171253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300026319\|Ga0209647_1128582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1138	Open in IMG/M
3300027638\|Ga0208612_1000062	All Organisms → cellular organisms → Bacteria	77155	Open in IMG/M
3300027840\|Ga0209683_10025105	All Organisms → cellular organisms → Bacteria	2508	Open in IMG/M
3300027917\|Ga0209536_101800616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	738	Open in IMG/M
3300028563\|Ga0265319_1068198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1143	Open in IMG/M
3300028711\|Ga0307293_10008353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2834	Open in IMG/M
3300028720\|Ga0307317_10129533	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300028722\|Ga0307319_10090110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	978	Open in IMG/M
3300028722\|Ga0307319_10107669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	895	Open in IMG/M
3300028771\|Ga0307320_10041741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1684	Open in IMG/M
3300028784\|Ga0307282_10247741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	856	Open in IMG/M
3300028790\|Ga0307283_10047574	Not Available	1013	Open in IMG/M
3300028793\|Ga0307299_10314118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	588	Open in IMG/M
3300028802\|Ga0307503_10545453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	632	Open in IMG/M
3300028807\|Ga0307305_10238457	Not Available	832	Open in IMG/M
3300030006\|Ga0299907_10525528	Not Available	932	Open in IMG/M
3300031093\|Ga0308197_10118133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	810	Open in IMG/M
3300031720\|Ga0307469_11465754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	653	Open in IMG/M
3300031781\|Ga0318547_10395715	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300031846\|Ga0318512_10739545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora corrugata	505	Open in IMG/M
3300031938\|Ga0308175_102982830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	527	Open in IMG/M
3300031939\|Ga0308174_11167655	All Organisms → cellular organisms → Bacteria → Terrabacteria group	656	Open in IMG/M
3300032074\|Ga0308173_10749180	All Organisms → cellular organisms → Bacteria → Terrabacteria group	896	Open in IMG/M
3300032770\|Ga0335085_10121949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3324	Open in IMG/M
3300033758\|Ga0314868_033699	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300034090\|Ga0326723_0207189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	869	Open in IMG/M
3300034151\|Ga0364935_0309615	Not Available	522	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.78%
Host-Associated	Host-Associated	22.22%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.38%
Plants	Host-Associated → Plants	22.22%
Aquatic	Environmental → Aquatic	9.40%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.98%
Freshwater	Environmental → Aquatic → Freshwater	5.13%
Sediment	Environmental → Aquatic → Sediment	3.42%
Marine	Environmental → Aquatic → Marine	0.85%
Peat	Environmental → Terrestrial → Peat	0.85%
Floodplain	Environmental → Terrestrial → Floodplain	0.85%
Roots	Host-Associated → Plants → Roots	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.26%
Loam	Environmental → Terrestrial → Soil → Loam	6.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.13%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.13%
Ice	Environmental → Aquatic → Freshwater → Ice	4.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.42%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.85%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.85%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.85%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.26%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.13%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	4.27%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.42%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.42%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.56%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.85%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.37%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.13%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.27%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.27%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	3.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.42%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.56%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.71%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.71%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.85%
Polar Desert	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert	0.85%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.85%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.85%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.85%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.85%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.85%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.85%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005886	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012043	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ601 (22.06)	Environmental	Open in IMG/M
3300012092	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ445A (23.06)	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300012679	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ299 (21.06)	Environmental	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014322	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300027638	Polar desert microbial communities from Antarctic Dry Valleys - UQ889 (SPAdes)	Environmental	Open in IMG/M
3300027840	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M
3300028563	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG	Host-Associated	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033758	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_A	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077582

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J12802_118892402	3300000890	Soil	MWTSVGEGEGSPVTFYERYGFKRTGDFHGNEIMLRLEIS*
JGI10214J12806_120666842	3300000891	Soil	RRPEVTIMRTSCGQGEGSPLGFYERYGFEQTGNIVFDDEILLQYRLR*
JGI10216J12902_1068692612	3300000956	Soil	EAMWTSAGQGEGSPIPFYERYGFERTGDIVFDDEVLLRLSLTRGET*
JGI10216J12902_1175159693	3300000956	Soil	SAGQGEGSPIPFYERYGFEQTGEFEEDEVKLRLTII*
Ga0062593_1003415311	3300004114	Soil	EVIWTSAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTII*
Ga0062593_1010011102	3300004114	Soil	YFRNRGVGTMWTSAGQGEGSPVTFYERYGFERTGDFHGNETLLRLEIS*
Ga0062593_1011669162	3300004114	Soil	SKGLETMWTSAGEGDGSPIPFYERYGFVRQGRTSWGEVMLRLVL*
Ga0062595_1010973532	3300004479	Soil	VLSTSAGPGPGSPIPFYERYGFRQTGEIVFDNEVLLQLPLRP*
Ga0062592_1017042591	3300004480	Soil	YFRNRGVGTMWTSAGQGAGSPVTFYERYGFERTGDFHGNETLLRLEIS*
Ga0066810_100155221	3300005169	Soil	PGVEALWTSAGQGEGSPIAFYERYGFEQTGEIVFDDEVLLRLELR*
Ga0070666_104202161	3300005335	Switchgrass Rhizosphere	GVEVIWTSAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTII*
Ga0068868_1001123332	3300005338	Miscanthus Rhizosphere	VWTSCGQGDGSPLGFYERYGFRQTGDRVFDDEILLRLGIA*
Ga0070674_1021364103	3300005356	Miscanthus Rhizosphere	LMWTSCGEGDGSPLGFYERYGFEQTGDRVFDNEILLRLEIT*
Ga0066687_102724811	3300005454	Soil	VEVIWTSAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTII*
Ga0070679_1019936812	3300005530	Corn Rhizosphere	GRPGVEILWTSCGEGDGGPLGFYERYGFRQAGERVFDDEILLRLEIA*
Ga0070693_1001142534	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	RRRPEVKIMRTSCGQGKGSPLGFYEHYGFQQTGEIVFDNEILLQYELR*
Ga0066695_107974281	3300005553	Soil	RKRPEVEVMRTSAGQGKGSPIGFYERYGFERTGEIVFDNEVLLQLELR*
Ga0066700_105092382	3300005559	Soil	VDVLSTSAGEGEGGPIPFYERYGFVRTGEIVFENEVLLQLRLRGR*
Ga0068866_112634751	3300005718	Miscanthus Rhizosphere	GQGTGSPIPFYERYGFVQTGEIVFDGEVLLELKLRVRHP*
Ga0068860_1005923111	3300005843	Switchgrass Rhizosphere	ERGNAEMWTTAGEGDGGPIPFYERYGFVRTGDMVFDDEVLLRLDLT*
Ga0075286_10119021	3300005886	Rice Paddy Soil	LRGRGGEGDGGPLGFDERTVTQVGARVFDNEILLRVEIT*
Ga0081455_104377041	3300005937	Tabebuia Heterophylla Rhizosphere	SAGEGEGGPVTFYERYGFERTGELHGDEILLRVEIS*
Ga0070712_1012449473	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VEVIWTSAGQGEGSPIPFYERYGFEQTGEIEDGEVKLRLTIV*
Ga0075367_100400011	3300006178	Populus Endosphere	VSTSAGAGDGSPIPFYERYGFVQTGDIVFDDERLLRLEL*
Ga0074056_118509404	3300006574	Soil	VIWTSAGEGEGCPIPFYERYGFEQTGELDEDEIKLRLTII*
Ga0074049_126969202	3300006580	Soil	ILWVSAGQGEGSPQPFYERYGFVATDRIVEDEVVLRLDLQQEAS*
Ga0074048_121170992	3300006581	Soil	VAASPSAGQGEGSPVTFYERCGFKRTGDFHGNEILLRLEIS*
Ga0075421_1004476001	3300006845	Populus Rhizosphere	GSPITFYERYGFERTGEVHSDEVHSEVVLRLKLS*
Ga0075421_1007770941	3300006845	Populus Rhizosphere	QGEGSPLGFYERYGFEQTGDIVFDDEILLQYKLR*
Ga0075434_1012880582	3300006871	Populus Rhizosphere	RRRPEVTIMRTSCGQGEGSPLGFYERYGFEQTGDIVFDDEILLQYKLR*
Ga0075435_1009585281	3300007076	Populus Rhizosphere	NREVRTMWTSAEQGEGSPVAFYERYGFKRAGDLHGDEILLRLEIS*
Ga0066710_1032296673	3300009012	Grasslands Soil	GQCKRSRLGFYKNYGFEQTDEIVFDNAILLQYKLR
Ga0111539_113792721	3300009094	Populus Rhizosphere	MWTSAGQGEGSPVTFYERYGFERTGDFHGDEILLRLQIS*
Ga0126311_108838931	3300010045	Serpentine Soil	SAGQGDGSPITFYERYGFERTGEVRYDEVMLRLKLR*
Ga0126311_111062911	3300010045	Serpentine Soil	MWTSAGQGEGSPVTFYERYGFKRTGDFHDNEILLRLEIS*
Ga0134064_101521172	3300010325	Grasslands Soil	MWTSVGQGEGSPVTFYERYGFKRTGDFHGNEILLRLEIS*
Ga0134071_101415883	3300010336	Grasslands Soil	FRNRGVGTMWTSVGQGEGSPVTFYERYGFKRTGDFHGNEILLRLEIS*
Ga0134125_100607903	3300010371	Terrestrial Soil	MWTSVRQGDGSAVTFYEQYGFERTGDFHGDEILLRLQIS*
Ga0134122_101500151	3300010400	Terrestrial Soil	EGDGGPIPFYERYGFVRTGDMVFDDEVLLRLDLT*
Ga0134123_106594191	3300010403	Terrestrial Soil	TAGEGDGGPIPFYERYGFVRTGDMVFDDEVLLRLDLT*
Ga0134123_108176751	3300010403	Terrestrial Soil	DILWVSAGQGEGSPQPFYERYGFVATDRIVEDEVVLRLDLQQEAS*
Ga0136631_100124001	3300012043	Polar Desert Sand	SAGQGDGSPITFYERYGFEQTGEIVFDNEVLLRLRLS*
Ga0136621_10941833	3300012092	Polar Desert Sand	MWTSAGQGEGSPIAFYERYGFEQTGEIVFDDEVLLRLELR*
Ga0137365_107431511	3300012201	Vadose Zone Soil	RTSCGQGEGSPLGFYERYGFEQTGEIVFDNEILLHYKLR*
Ga0137365_110139802	3300012201	Vadose Zone Soil	GRGRGSPLGFYERYGFEQTGEIVFDNEMLLQYKLR*
Ga0137376_114472961	3300012208	Vadose Zone Soil	VLSTSAGQGDGSPITFYERYGFERTGEVVFDEVFLRLKLR*
Ga0137369_100547701	3300012355	Vadose Zone Soil	QGKGSPIGFYERYGFERTGDIVFDNEVLLQLKLR*
Ga0137371_111009802	3300012356	Vadose Zone Soil	MRTSCGQGDGSPLGFYERYGFEQTGEIVFDSEILLQYKLR*
Ga0137368_106707072	3300012358	Vadose Zone Soil	GQGKGSPIGFYERYGFERTGDIVFDNEVLLQLKLR*
Ga0157216_105117492	3300012668	Glacier Forefield Soil	GVEVLNTSAGQGDGSPITFYERYGFERTGEVFYDEVLLRLRLR*
Ga0136616_100355861	3300012679	Polar Desert Sand	GQGDGSPITFYERYGFEQTGEIVFDNEVLLRLRLS*
Ga0136614_111680012	3300012684	Polar Desert Sand	VLWTSAGQGDGSPITFYERYGFEQTGEIVFDNEVLLRLRLS*
Ga0157285_100252512	3300012897	Soil	CAGQGEASPIPFYERYGFEQTGDLWGGEVKLRLRIGS*
Ga0157291_101224923	3300012902	Soil	AGQGDGSPIPFYERYGFVRTGVVFEDEVLLRLELA*
Ga0157286_101582382	3300012908	Soil	PGVEVIWTCAGHGEGSPIPFYERYGFEQTGDLWGGEVKLRLRIGS*
Ga0164298_105187492	3300012955	Soil	PEVKIMRTSCGQGEGSPLGFYQHYGFEQTGEIVFDNEILLQYKLR*
Ga0164303_106686721	3300012957	Soil	PGVEVIWTSAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTIM*
Ga0164303_107476463	3300012957	Soil	MWTSAGEGEGSPIPFYERYGFVRTGDIIFDNEVLLRLDLT*
Ga0164299_109806501	3300012958	Soil	EMWTTAGEGAGSPIPFYERYGFVRTGDIVFDDEVLLRLDLA*
Ga0164308_113143422	3300012985	Soil	AGRGKGNPIPFYERYGFVQTGEIVFDNEVLLRLDLG*
Ga0164306_102099924	3300012988	Soil	GQGDGSPIPFYERYGFEQTGDIQDGEVKLRLTIS*
Ga0157371_109338093	3300013102	Corn Rhizosphere	GRPGVEVIWTSAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTII*
Ga0157372_107676502	3300013307	Corn Rhizosphere	WTSCGQGDGGPLGFYERYGFRRTGDRVFDDEILLRLGIA*
Ga0075355_11531781	3300014322	Natural And Restored Wetlands	SAGQGEGSPVAFYERYGFTRTEDLHGDEIMLRLNIT*
Ga0157380_116327412	3300014326	Switchgrass Rhizosphere	VVSTSAGRGEGSPIPFYERYGFRETGEIVFDGEVLLELRL*
Ga0157380_134840033	3300014326	Switchgrass Rhizosphere	TSAGQGDGSPLGFYERYGLTQAGEVVFDDEVLLHLTFD*
Ga0132257_1040933362	3300015373	Arabidopsis Rhizosphere	MSTSAGQGEGSPIAFYERYGFVLTGQLHGNEVMLRLEIS*
Ga0182038_115849432	3300016445	Soil	MWTSAAEGDGSPISFYERYGFERTGDRHGNEVLLRLESS
Ga0190266_102259532	3300017965	Soil	ALITSVGEGDGSPIEFYERYGFERTGEVSDGEVFLQLRLP
Ga0184605_103814022	3300018027	Groundwater Sediment	VGTMWTSVGQGEGSPVTFYERYGFKRTGDFHGNEILLRLEIS
Ga0184621_101830833	3300018054	Groundwater Sediment	CGQGDGSPLGFYERYGFQQTGEIVFDNEILLQYKLR
Ga0184617_10496993	3300018066	Groundwater Sediment	VLSTSAAQGDASPITFYERYGFEQTGEIVFDNEILLQLKLR
Ga0184627_102149353	3300018079	Groundwater Sediment	STSAGQGDGSPITFYERYGFEQTGEIVFDNEVLLQLKLR
Ga0190272_115237252	3300018429	Soil	GVEVLNTSAGQGDGSPVTFYERYGFERTGEVRFDEVMLRLKLR
Ga0066655_105752203	3300018431	Grasslands Soil	EVKIMRTSCGQGKGSPLGFYEHYGFEQTGEIVFDKEILLQYKLRERST
Ga0190271_103290881	3300018481	Soil	TSAGQGEGSPLGFYERYGFERTGEIRFDEVMLRLKLR
Ga0193728_10364215	3300019890	Soil	VLSTSAGQGGEGSPIPFYERYGFERTGDIVFDDDVLLELRLASSG
Ga0207653_102808411	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MRTSCGQGQGSPLGFYEHYGFQQTGEIVFDNEILLQYELR
Ga0207685_100992853	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	TSVRQGDGSPVTFYEQYGFERTGDFHGDEILLRLQIS
Ga0207707_102534904	3300025912	Corn Rhizosphere	CGQGKGSPLGFYEHYGFQQTGEIVFDNEILLQYELR
Ga0207695_106070272	3300025913	Corn Rhizosphere	VWTSCGQGDGSPLGFYERYGFRQTGDRVFDDEILLRLGIA
Ga0207693_104886263	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	RRPGVEVMWTSCGEGNGSPLGFYERYGFQQTGDRVFDDEILLRLEIAD
Ga0207663_100901671	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RRPEVKIMRTSCGQGKGSPLGFYEHYGFQQTGEIVFDNEILLQYELR
Ga0207659_103423054	3300025926	Miscanthus Rhizosphere	EVIWTSAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTII
Ga0207706_103595574	3300025933	Corn Rhizosphere	WTSAGQGDGSPIPFYERYGFVRTGVVFEDEVLLRLELA
Ga0207686_103864362	3300025934	Miscanthus Rhizosphere	VELFHAGQGDGSPIVFYERYGFERTGEVSDDEVVLRLRLA
Ga0207709_102375054	3300025935	Miscanthus Rhizosphere	SAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTII
Ga0207667_100281757	3300025949	Corn Rhizosphere	VIWTSAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTII
Ga0207668_121563152	3300025972	Switchgrass Rhizosphere	PGVEVVSTSAGRGEGSPIPFYERYGFRETGEIVFDGEVLLELRL
Ga0207677_121712532	3300026023	Miscanthus Rhizosphere	VLSTSAGTGEGSPIPFYERYGFRQTGEIVFDGEVLLELRL
Ga0209647_11285823	3300026319	Grasslands Soil	VEVLSTSAGEGEGGPIPFYERYGFVRTGEIVFEDEVLLQFKLRGR
Ga0208612_10000626	3300027638	Polar Desert	MWTSAGQGEGSPIAFYERYGFEQTGEIVFDDEVLLRLELR
Ga0209683_100251051	3300027840	Wetland Sediment	VLSTSAGQGDGSPIAFYERYGFEQTGAQWYDEVLLRFKLR
Ga0209536_1018006161	3300027917	Marine Sediment	CGQGEGSPEGFYRRMGFERTGKIVSHEVVMRLALE
Ga0265319_10681983	3300028563	Rhizosphere	TSAGQGDGSPVAFYERYGFERTGQLHGDEILLRLEISPP
Ga0307293_100083531	3300028711	Soil	PEVEIMRTSCGQGDGSPLGFYERYGFEQTGEIVFDNEILLQLKLR
Ga0307317_101295331	3300028720	Soil	WTSAGQGEGSPLGFYERYGFTQAGEIVFDDEVLLHLTFGYGDPAG
Ga0307319_100901103	3300028722	Soil	VEVMRTSCGQGDGSPLGFYERYGFQQTGQIVFNNEILLQLKLR
Ga0307319_101076691	3300028722	Soil	VLNTSAGQGDGSPITFYERYGFERTGEVRFDEVLLRLKLR
Ga0307320_100417413	3300028771	Soil	EVMRTSAGQGKGSPIGFYERYGFERTGDIVFDSEVLLQLKLR
Ga0307282_102477412	3300028784	Soil	MRTSCGQGKGSPLGFYEHYGFEQTGEIVFDNEILLQYKLR
Ga0307283_100475741	3300028790	Soil	TSAGQGEGSPIAFYERYGFERTGELHGSEVMLRLEIS
Ga0307299_103141182	3300028793	Soil	EVLNTSAGQGDGSPLPFYEHYGFERTGEVRFDEVVLRLKLR
Ga0307503_105454532	3300028802	Soil	MSTSAGQGEGSPITFYERYGFTRTGELHGNEIMLRLEID
Ga0307305_102384572	3300028807	Soil	IMRTSCGQGDGSPLGFYERYGFEQSGEIVFNNEILLQFKLR
Ga0299907_105255281	3300030006	Soil	VAVLSTSAGQGDGSPVTFYERYGFERTGDIVFDDEVLLRLKVR
Ga0308197_101181331	3300031093	Soil	GVEVLNTSAGQGDGSPITFYERYGFERTGEVQFDEVMLRLKLR
Ga0307469_114657542	3300031720	Hardwood Forest Soil	GTMWTSVGQGEGSPVTFYERYGFEQTGDLHGNEILLRLDIS
Ga0318547_103957153	3300031781	Soil	AAEGDGSPISFYERYGFERTGDRHGNEVLLRLEIS
Ga0318512_107395451	3300031846	Soil	EVETMWTSAAEGDGSPISFYERYGFERTGDRHGNEVLLRLEIS
Ga0308175_1029828301	3300031938	Soil	IWTSAGQGEGSPIPFYERYGFEQTGDLEQGEVKLRLAIA
Ga0308174_111676551	3300031939	Soil	RGVALMSTSAGQGDGSPIAFYERYGFVQTGDIVFDGEVLLELPLR
Ga0308173_107491802	3300032074	Soil	MSTSAGQGQGSPIAFYERYGFVQTGDIVFDGEVLLELPLR
Ga0335085_101219496	3300032770	Soil	GVGTMWTSAVEGSGSPVTFYERYGFKRTGDLHGEEILLRLEIS
Ga0314868_033699_19_153	3300033758	Peatland	MWTSAMEGEGSPVAFYERYGFRRTGERHGDEVMLRLAIADIATA
Ga0326723_0207189_18_143	3300034090	Peat Soil	VLWTSAGRGEGSPIPFYERYGFEQTGEIVFDGEVLLRLELP
Ga0364935_0309615_389_520	3300034151	Sediment	GVEVLNTSASQGDGSPITFYEHYGFERTGEIRFDEVMLRLKLR

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign