Metagenome / Metatranscriptome Family F077582

Overview

Basic Information

• Family ID: F077582
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 117
• Average Sequence Length: 41 residues
• Representative Sequence: MWTSAGQGEGSPIAFYERYGFEQTGEIVFDDEVLLRLELR
• Number of Associated Samples: 107
• Number of Associated Scaffolds: 117

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 10.34 %
• % of genes near scaffold ends (potentially truncated): 73.50 %
• % of genes from short scaffolds (< 2000 bps): 88.03 %
• Associated GOLD sequencing projects: 105
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (91.453 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.367 % of family members)
• Environment Ontology (ENVO): Unclassified (29.915 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (45.299 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 8.82%
  β-sheet: 25.00%
  Coil/Unstructured: 66.18%

Predicted 3D Structure

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.108.1.0: automated matches	d2vi7a_	2vi7	0.73325
d.108.1.0: automated matches	d6e1xa_	6e1x	0.73188
d.108.1.1: N-acetyl transferase, NAT	d1mk4a1	1mk4	0.72957
d.108.1.1: N-acetyl transferase, NAT	d1u6ma1	1u6m	0.72931
d.108.1.1: N-acetyl transferase, NAT	d1cjwa_	1cjw	0.72865

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF01939	NucS	11.97
PF10604	Polyketide_cyc2	4.27
PF07883	Cupin_2	3.42
PF00583	Acetyltransf_1	3.42
PF06224	HTH_42	2.56
PF12680	SnoaL_2	2.56
PF01243	Putative_PNPOx	2.56
PF01872	RibD_C	2.56
PF08818	DUF1801	1.71
PF00768	Peptidase_S11	1.71

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG1637	Endonuclease NucS, RecB family	Replication, recombination and repair [L]	11.97
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	2.56
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	2.56
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	2.56
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	1.71
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.71
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	1.71
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	1.71
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.71
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	1.71

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.45 %
Unclassified	root	N/A	8.55 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.45 %
Unclassified	root	N/A	8.55 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.45 %
Unclassified	root	N/A	8.55 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	73.50 %
Unclassified	root	N/A	8.55 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	69.23 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Unclassified	root	N/A	8.55 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	33.33 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.85 %
Unclassified	root	N/A	8.55 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.85 %

Level 7

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.56 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.85 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.71 %
Unclassified	root	N/A	8.55 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	14.53 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.56 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.53 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.85 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.85 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.71 %
Unclassified	root	N/A	8.55 %

Level 9

Name	Rank	Taxonomy	Distribution
Acrocarpospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora	1.71 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.56 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.53 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.85 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.85 %
Unclassified	root	N/A	8.55 %

Level 10

Name	Rank	Taxonomy	Distribution
Acrocarpospora corrugata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora corrugata	1.71 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.56 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.53 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.85 %
Unclassified	root	N/A	8.55 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.85 %

Level 11

Name	Rank	Taxonomy	Distribution
Acrocarpospora corrugata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora corrugata	1.71 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.56 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.53 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.85 %
Streptomyces sp. W007	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. W007	0.85 %
Unclassified	root	N/A	8.55 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000890|JGI11643J12802_11889240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. W007	539
3300000891|JGI10214J12806_12066684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	610
3300000956|JGI10216J12902_106869261	All Organisms → cellular organisms → Bacteria	580
3300000956|JGI10216J12902_117515969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	642
3300004114|Ga0062593_100341531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1303
3300004114|Ga0062593_101001110	All Organisms → cellular organisms → Bacteria	857
3300004114|Ga0062593_101166916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	805
3300004479|Ga0062595_101097353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	695
3300004480|Ga0062592_101704259	All Organisms → cellular organisms → Bacteria	613
3300005169|Ga0066810_10015522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1200

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.78%
Host-Associated	Host-Associated	22.22%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	9.40%
Plants	Host-Associated → Plants	22.22%
Terrestrial	Environmental → Terrestrial	68.38%

Category

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	0.85%
Freshwater	Environmental → Aquatic → Freshwater	5.13%
Marine	Environmental → Aquatic → Marine	0.85%
Peat	Environmental → Terrestrial → Peat	0.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.38%
Roots	Host-Associated → Plants → Roots	0.85%
Sediment	Environmental → Aquatic → Sediment	3.42%
Soil	Environmental → Terrestrial → Soil	66.67%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.13%
Ice	Environmental → Aquatic → Freshwater → Ice	4.27%
Loam	Environmental → Terrestrial → Soil → Loam	6.84%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.85%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.42%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.85%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.56%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.55%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.13%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	4.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.42%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.42%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.85%

Habitat

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.13%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.56%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.71%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.42%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.71%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.85%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.85%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.85%
Polar Desert	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert	0.85%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	3.42%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.85%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.85%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.85%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.37%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.13%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.85%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J12802_118892402	3300000890	Soil	MWTSVGEGEGSPVTFYERYGFKRTGDFHGNEIMLRLEIS*
JGI10214J12806_120666842	3300000891	Soil	RRPEVTIMRTSCGQGEGSPLGFYERYGFEQTGNIVFDDEILLQYRLR*
JGI10216J12902_1068692612	3300000956	Soil	EAMWTSAGQGEGSPIPFYERYGFERTGDIVFDDEVLLRLSLTRGET*
JGI10216J12902_1175159693	3300000956	Soil	SAGQGEGSPIPFYERYGFEQTGEFEEDEVKLRLTII*
Ga0062593_1003415311	3300004114	Soil	EVIWTSAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTII*
Ga0062593_1010011102	3300004114	Soil	YFRNRGVGTMWTSAGQGEGSPVTFYERYGFERTGDFHGNETLLRLEIS*
Ga0062593_1011669162	3300004114	Soil	SKGLETMWTSAGEGDGSPIPFYERYGFVRQGRTSWGEVMLRLVL*
Ga0062595_1010973532	3300004479	Soil	VLSTSAGPGPGSPIPFYERYGFRQTGEIVFDNEVLLQLPLRP*
Ga0062592_1017042591	3300004480	Soil	YFRNRGVGTMWTSAGQGAGSPVTFYERYGFERTGDFHGNETLLRLEIS*
Ga0066810_100155221	3300005169	Soil	PGVEALWTSAGQGEGSPIAFYERYGFEQTGEIVFDDEVLLRLELR*
Ga0070666_104202161	3300005335	Switchgrass Rhizosphere	GVEVIWTSAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTII*
Ga0068868_1001123332	3300005338	Miscanthus Rhizosphere	VWTSCGQGDGSPLGFYERYGFRQTGDRVFDDEILLRLGIA*
Ga0070674_1021364103	3300005356	Miscanthus Rhizosphere	LMWTSCGEGDGSPLGFYERYGFEQTGDRVFDNEILLRLEIT*
Ga0066687_102724811	3300005454	Soil	VEVIWTSAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTII*
Ga0070679_1019936812	3300005530	Corn Rhizosphere	GRPGVEILWTSCGEGDGGPLGFYERYGFRQAGERVFDDEILLRLEIA*
Ga0070693_1001142534	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	RRRPEVKIMRTSCGQGKGSPLGFYEHYGFQQTGEIVFDNEILLQYELR*
Ga0066695_107974281	3300005553	Soil	RKRPEVEVMRTSAGQGKGSPIGFYERYGFERTGEIVFDNEVLLQLELR*
Ga0066700_105092382	3300005559	Soil	VDVLSTSAGEGEGGPIPFYERYGFVRTGEIVFENEVLLQLRLRGR*
Ga0068866_112634751	3300005718	Miscanthus Rhizosphere	GQGTGSPIPFYERYGFVQTGEIVFDGEVLLELKLRVRHP*
Ga0068860_1005923111	3300005843	Switchgrass Rhizosphere	ERGNAEMWTTAGEGDGGPIPFYERYGFVRTGDMVFDDEVLLRLDLT*
Ga0075286_10119021	3300005886	Rice Paddy Soil	LRGRGGEGDGGPLGFDERTVTQVGARVFDNEILLRVEIT*
Ga0081455_104377041	3300005937	Tabebuia Heterophylla Rhizosphere	SAGEGEGGPVTFYERYGFERTGELHGDEILLRVEIS*
Ga0070712_1012449473	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VEVIWTSAGQGEGSPIPFYERYGFEQTGEIEDGEVKLRLTIV*
Ga0075367_100400011	3300006178	Populus Endosphere	VSTSAGAGDGSPIPFYERYGFVQTGDIVFDDERLLRLEL*
Ga0074056_118509404	3300006574	Soil	VIWTSAGEGEGCPIPFYERYGFEQTGELDEDEIKLRLTII*
Ga0074049_126969202	3300006580	Soil	ILWVSAGQGEGSPQPFYERYGFVATDRIVEDEVVLRLDLQQEAS*
Ga0074048_121170992	3300006581	Soil	VAASPSAGQGEGSPVTFYERCGFKRTGDFHGNEILLRLEIS*
Ga0075421_1004476001	3300006845	Populus Rhizosphere	GSPITFYERYGFERTGEVHSDEVHSEVVLRLKLS*
Ga0075421_1007770941	3300006845	Populus Rhizosphere	QGEGSPLGFYERYGFEQTGDIVFDDEILLQYKLR*
Ga0075434_1012880582	3300006871	Populus Rhizosphere	RRRPEVTIMRTSCGQGEGSPLGFYERYGFEQTGDIVFDDEILLQYKLR*
Ga0075435_1009585281	3300007076	Populus Rhizosphere	NREVRTMWTSAEQGEGSPVAFYERYGFKRAGDLHGDEILLRLEIS*
Ga0066710_1032296673	3300009012	Grasslands Soil	GQCKRSRLGFYKNYGFEQTDEIVFDNAILLQYKLR
Ga0111539_113792721	3300009094	Populus Rhizosphere	MWTSAGQGEGSPVTFYERYGFERTGDFHGDEILLRLQIS*
Ga0126311_108838931	3300010045	Serpentine Soil	SAGQGDGSPITFYERYGFERTGEVRYDEVMLRLKLR*
Ga0126311_111062911	3300010045	Serpentine Soil	MWTSAGQGEGSPVTFYERYGFKRTGDFHDNEILLRLEIS*
Ga0134064_101521172	3300010325	Grasslands Soil	MWTSVGQGEGSPVTFYERYGFKRTGDFHGNEILLRLEIS*
Ga0134071_101415883	3300010336	Grasslands Soil	FRNRGVGTMWTSVGQGEGSPVTFYERYGFKRTGDFHGNEILLRLEIS*
Ga0134125_100607903	3300010371	Terrestrial Soil	MWTSVRQGDGSAVTFYEQYGFERTGDFHGDEILLRLQIS*
Ga0134122_101500151	3300010400	Terrestrial Soil	EGDGGPIPFYERYGFVRTGDMVFDDEVLLRLDLT*
Ga0134123_106594191	3300010403	Terrestrial Soil	TAGEGDGGPIPFYERYGFVRTGDMVFDDEVLLRLDLT*
Ga0134123_108176751	3300010403	Terrestrial Soil	DILWVSAGQGEGSPQPFYERYGFVATDRIVEDEVVLRLDLQQEAS*
Ga0136631_100124001	3300012043	Polar Desert Sand	SAGQGDGSPITFYERYGFEQTGEIVFDNEVLLRLRLS*
Ga0136621_10941833	3300012092	Polar Desert Sand	MWTSAGQGEGSPIAFYERYGFEQTGEIVFDDEVLLRLELR*
Ga0137365_107431511	3300012201	Vadose Zone Soil	RTSCGQGEGSPLGFYERYGFEQTGEIVFDNEILLHYKLR*
Ga0137365_110139802	3300012201	Vadose Zone Soil	GRGRGSPLGFYERYGFEQTGEIVFDNEMLLQYKLR*
Ga0137376_114472961	3300012208	Vadose Zone Soil	VLSTSAGQGDGSPITFYERYGFERTGEVVFDEVFLRLKLR*
Ga0137369_100547701	3300012355	Vadose Zone Soil	QGKGSPIGFYERYGFERTGDIVFDNEVLLQLKLR*
Ga0137371_111009802	3300012356	Vadose Zone Soil	MRTSCGQGDGSPLGFYERYGFEQTGEIVFDSEILLQYKLR*
Ga0137368_106707072	3300012358	Vadose Zone Soil	GQGKGSPIGFYERYGFERTGDIVFDNEVLLQLKLR*
Ga0157216_105117492	3300012668	Glacier Forefield Soil	GVEVLNTSAGQGDGSPITFYERYGFERTGEVFYDEVLLRLRLR*
Ga0136616_100355861	3300012679	Polar Desert Sand	GQGDGSPITFYERYGFEQTGEIVFDNEVLLRLRLS*
Ga0136614_111680012	3300012684	Polar Desert Sand	VLWTSAGQGDGSPITFYERYGFEQTGEIVFDNEVLLRLRLS*
Ga0157285_100252512	3300012897	Soil	CAGQGEASPIPFYERYGFEQTGDLWGGEVKLRLRIGS*
Ga0157291_101224923	3300012902	Soil	AGQGDGSPIPFYERYGFVRTGVVFEDEVLLRLELA*
Ga0157286_101582382	3300012908	Soil	PGVEVIWTCAGHGEGSPIPFYERYGFEQTGDLWGGEVKLRLRIGS*
Ga0164298_105187492	3300012955	Soil	PEVKIMRTSCGQGEGSPLGFYQHYGFEQTGEIVFDNEILLQYKLR*
Ga0164303_106686721	3300012957	Soil	PGVEVIWTSAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTIM*
Ga0164303_107476463	3300012957	Soil	MWTSAGEGEGSPIPFYERYGFVRTGDIIFDNEVLLRLDLT*
Ga0164299_109806501	3300012958	Soil	EMWTTAGEGAGSPIPFYERYGFVRTGDIVFDDEVLLRLDLA*
Ga0164308_113143422	3300012985	Soil	AGRGKGNPIPFYERYGFVQTGEIVFDNEVLLRLDLG*
Ga0164306_102099924	3300012988	Soil	GQGDGSPIPFYERYGFEQTGDIQDGEVKLRLTIS*
Ga0157371_109338093	3300013102	Corn Rhizosphere	GRPGVEVIWTSAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTII*
Ga0157372_107676502	3300013307	Corn Rhizosphere	WTSCGQGDGGPLGFYERYGFRRTGDRVFDDEILLRLGIA*
Ga0075355_11531781	3300014322	Natural And Restored Wetlands	SAGQGEGSPVAFYERYGFTRTEDLHGDEIMLRLNIT*
Ga0157380_116327412	3300014326	Switchgrass Rhizosphere	VVSTSAGRGEGSPIPFYERYGFRETGEIVFDGEVLLELRL*
Ga0157380_134840033	3300014326	Switchgrass Rhizosphere	TSAGQGDGSPLGFYERYGLTQAGEVVFDDEVLLHLTFD*
Ga0132257_1040933362	3300015373	Arabidopsis Rhizosphere	MSTSAGQGEGSPIAFYERYGFVLTGQLHGNEVMLRLEIS*
Ga0182038_115849432	3300016445	Soil	MWTSAAEGDGSPISFYERYGFERTGDRHGNEVLLRLESS
Ga0190266_102259532	3300017965	Soil	ALITSVGEGDGSPIEFYERYGFERTGEVSDGEVFLQLRLP
Ga0184605_103814022	3300018027	Groundwater Sediment	VGTMWTSVGQGEGSPVTFYERYGFKRTGDFHGNEILLRLEIS
Ga0184621_101830833	3300018054	Groundwater Sediment	CGQGDGSPLGFYERYGFQQTGEIVFDNEILLQYKLR
Ga0184617_10496993	3300018066	Groundwater Sediment	VLSTSAAQGDASPITFYERYGFEQTGEIVFDNEILLQLKLR
Ga0184627_102149353	3300018079	Groundwater Sediment	STSAGQGDGSPITFYERYGFEQTGEIVFDNEVLLQLKLR
Ga0190272_115237252	3300018429	Soil	GVEVLNTSAGQGDGSPVTFYERYGFERTGEVRFDEVMLRLKLR
Ga0066655_105752203	3300018431	Grasslands Soil	EVKIMRTSCGQGKGSPLGFYEHYGFEQTGEIVFDKEILLQYKLRERST
Ga0190271_103290881	3300018481	Soil	TSAGQGEGSPLGFYERYGFERTGEIRFDEVMLRLKLR
Ga0193728_10364215	3300019890	Soil	VLSTSAGQGGEGSPIPFYERYGFERTGDIVFDDDVLLELRLASSG
Ga0207653_102808411	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MRTSCGQGQGSPLGFYEHYGFQQTGEIVFDNEILLQYELR
Ga0207685_100992853	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	TSVRQGDGSPVTFYEQYGFERTGDFHGDEILLRLQIS
Ga0207707_102534904	3300025912	Corn Rhizosphere	CGQGKGSPLGFYEHYGFQQTGEIVFDNEILLQYELR
Ga0207695_106070272	3300025913	Corn Rhizosphere	VWTSCGQGDGSPLGFYERYGFRQTGDRVFDDEILLRLGIA
Ga0207693_104886263	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	RRPGVEVMWTSCGEGNGSPLGFYERYGFQQTGDRVFDDEILLRLEIAD
Ga0207663_100901671	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RRPEVKIMRTSCGQGKGSPLGFYEHYGFQQTGEIVFDNEILLQYELR
Ga0207659_103423054	3300025926	Miscanthus Rhizosphere	EVIWTSAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTII
Ga0207706_103595574	3300025933	Corn Rhizosphere	WTSAGQGDGSPIPFYERYGFVRTGVVFEDEVLLRLELA
Ga0207686_103864362	3300025934	Miscanthus Rhizosphere	VELFHAGQGDGSPIVFYERYGFERTGEVSDDEVVLRLRLA
Ga0207709_102375054	3300025935	Miscanthus Rhizosphere	SAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTII
Ga0207667_100281757	3300025949	Corn Rhizosphere	VIWTSAGQGEGSPIPFYERYGFEQTGELEENEVKLRLTII
Ga0207668_121563152	3300025972	Switchgrass Rhizosphere	PGVEVVSTSAGRGEGSPIPFYERYGFRETGEIVFDGEVLLELRL
Ga0207677_121712532	3300026023	Miscanthus Rhizosphere	VLSTSAGTGEGSPIPFYERYGFRQTGEIVFDGEVLLELRL
Ga0209647_11285823	3300026319	Grasslands Soil	VEVLSTSAGEGEGGPIPFYERYGFVRTGEIVFEDEVLLQFKLRGR
Ga0208612_10000626	3300027638	Polar Desert	MWTSAGQGEGSPIAFYERYGFEQTGEIVFDDEVLLRLELR
Ga0209683_100251051	3300027840	Wetland Sediment	VLSTSAGQGDGSPIAFYERYGFEQTGAQWYDEVLLRFKLR
Ga0209536_1018006161	3300027917	Marine Sediment	CGQGEGSPEGFYRRMGFERTGKIVSHEVVMRLALE
Ga0265319_10681983	3300028563	Rhizosphere	TSAGQGDGSPVAFYERYGFERTGQLHGDEILLRLEISPP
Ga0307293_100083531	3300028711	Soil	PEVEIMRTSCGQGDGSPLGFYERYGFEQTGEIVFDNEILLQLKLR
Ga0307317_101295331	3300028720	Soil	WTSAGQGEGSPLGFYERYGFTQAGEIVFDDEVLLHLTFGYGDPAG
Ga0307319_100901103	3300028722	Soil	VEVMRTSCGQGDGSPLGFYERYGFQQTGQIVFNNEILLQLKLR
Ga0307319_101076691	3300028722	Soil	VLNTSAGQGDGSPITFYERYGFERTGEVRFDEVLLRLKLR
Ga0307320_100417413	3300028771	Soil	EVMRTSAGQGKGSPIGFYERYGFERTGDIVFDSEVLLQLKLR
Ga0307282_102477412	3300028784	Soil	MRTSCGQGKGSPLGFYEHYGFEQTGEIVFDNEILLQYKLR
Ga0307283_100475741	3300028790	Soil	TSAGQGEGSPIAFYERYGFERTGELHGSEVMLRLEIS
Ga0307299_103141182	3300028793	Soil	EVLNTSAGQGDGSPLPFYEHYGFERTGEVRFDEVVLRLKLR
Ga0307503_105454532	3300028802	Soil	MSTSAGQGEGSPITFYERYGFTRTGELHGNEIMLRLEID
Ga0307305_102384572	3300028807	Soil	IMRTSCGQGDGSPLGFYERYGFEQSGEIVFNNEILLQFKLR
Ga0299907_105255281	3300030006	Soil	VAVLSTSAGQGDGSPVTFYERYGFERTGDIVFDDEVLLRLKVR
Ga0308197_101181331	3300031093	Soil	GVEVLNTSAGQGDGSPITFYERYGFERTGEVQFDEVMLRLKLR
Ga0307469_114657542	3300031720	Hardwood Forest Soil	GTMWTSVGQGEGSPVTFYERYGFEQTGDLHGNEILLRLDIS
Ga0318547_103957153	3300031781	Soil	AAEGDGSPISFYERYGFERTGDRHGNEVLLRLEIS
Ga0318512_107395451	3300031846	Soil	EVETMWTSAAEGDGSPISFYERYGFERTGDRHGNEVLLRLEIS
Ga0308175_1029828301	3300031938	Soil	IWTSAGQGEGSPIPFYERYGFEQTGDLEQGEVKLRLAIA
Ga0308174_111676551	3300031939	Soil	RGVALMSTSAGQGDGSPIAFYERYGFVQTGDIVFDGEVLLELPLR
Ga0308173_107491802	3300032074	Soil	MSTSAGQGQGSPIAFYERYGFVQTGDIVFDGEVLLELPLR
Ga0335085_101219496	3300032770	Soil	GVGTMWTSAVEGSGSPVTFYERYGFKRTGDLHGEEILLRLEIS
Ga0314868_033699_19_153	3300033758	Peatland	MWTSAMEGEGSPVAFYERYGFRRTGERHGDEVMLRLAIADIATA
Ga0326723_0207189_18_143	3300034090	Peat Soil	VLWTSAGRGEGSPIPFYERYGFEQTGEIVFDGEVLLRLELP
Ga0364935_0309615_389_520	3300034151	Sediment	GVEVLNTSASQGDGSPITFYEHYGFERTGEIRFDEVMLRLKLR