Metagenome / Metatranscriptome Family F077576

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077576
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	42 residues
Representative Sequence	MRIVLLGLAMVLMAAGAPRGAAGAEIKVLTAGAFKQVLLA
Number of Associated Samples	108
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.34 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	94.02 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.487 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.641 % of family members)
Environment Ontology (ENVO)	Unclassified (31.624 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (35.043 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 26.47% β-sheet: 17.65% Coil/Unstructured: 55.88%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF03652	RuvX	22.22
PF09834	DUF2061	0.85
PF00872	Transposase_mut	0.85
PF02630	SCO1-SenC	0.85
PF14378	PAP2_3	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0816	YqgF/RuvX protein, pre-16S rRNA maturation RNase/Holliday junction resolvase/anti-termination factor	Translation, ribosomal structure and biogenesis [J]	22.22
COG1225	Peroxiredoxin	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG1999	Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.49 %
Unclassified	root	N/A	20.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.49 %
Unclassified	root	N/A	20.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.49 %
Unclassified	root	N/A	20.51 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	78.63 %
Unclassified	root	N/A	20.51 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	70.94 %
Unclassified	root	N/A	20.51 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.51 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.24 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.71 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.51 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.71 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	1.71 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.51 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.56 %
Collimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas	1.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.71 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.85 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.51 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.56 %
unclassified Collimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas	1.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.71 %
Hyphomicrobium nitrativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium nitrativorans	0.85 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.51 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.56 %
Collimonas sp. OK412	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp. OK412	1.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.71 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.85 %
Hyphomicrobium nitrativorans NL23	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium nitrativorans → Hyphomicrobium nitrativorans NL23	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1044801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	682	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1021852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1202	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10134568	Not Available	514	Open in IMG/M
3300001989\|JGI24739J22299_10113453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	812	Open in IMG/M
3300002073\|JGI24745J21846_1025535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	703	Open in IMG/M
3300002074\|JGI24748J21848_1047978	Not Available	554	Open in IMG/M
3300002075\|JGI24738J21930_10019599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1409	Open in IMG/M
3300002076\|JGI24749J21850_1006996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1569	Open in IMG/M
3300002155\|JGI24033J26618_1011501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1056	Open in IMG/M
3300002239\|JGI24034J26672_10027114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	921	Open in IMG/M
3300004267\|Ga0066396_10021114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	880	Open in IMG/M
3300004463\|Ga0063356_106394372	Not Available	505	Open in IMG/M
3300005093\|Ga0062594_102272390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	589	Open in IMG/M
3300005363\|Ga0008090_15684208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	622	Open in IMG/M
3300005437\|Ga0070710_10078341	All Organisms → cellular organisms → Bacteria → Proteobacteria	1923	Open in IMG/M
3300005563\|Ga0068855_101811113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	620	Open in IMG/M
3300005587\|Ga0066654_10694736	All Organisms → cellular organisms → Bacteria → Proteobacteria	570	Open in IMG/M
3300005718\|Ga0068866_11459657	Not Available	502	Open in IMG/M
3300006042\|Ga0075368_10127010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1058	Open in IMG/M
3300006050\|Ga0075028_101093218	Not Available	500	Open in IMG/M
3300006175\|Ga0070712_101456035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	598	Open in IMG/M
3300006178\|Ga0075367_11058089	Not Available	518	Open in IMG/M
3300006178\|Ga0075367_11064035	Not Available	517	Open in IMG/M
3300006572\|Ga0074051_10076529	All Organisms → cellular organisms → Bacteria → Proteobacteria	945	Open in IMG/M
3300006800\|Ga0066660_10253045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1379	Open in IMG/M
3300006844\|Ga0075428_102677264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp. OK412	508	Open in IMG/M
3300006847\|Ga0075431_101260142	All Organisms → cellular organisms → Bacteria → Proteobacteria	701	Open in IMG/M
3300006871\|Ga0075434_102598353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp. OK412	507	Open in IMG/M
3300006880\|Ga0075429_101677717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	552	Open in IMG/M
3300009089\|Ga0099828_11465231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium nitrativorans → Hyphomicrobium nitrativorans NL23	602	Open in IMG/M
3300009090\|Ga0099827_11120531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	683	Open in IMG/M
3300009100\|Ga0075418_11042535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	885	Open in IMG/M
3300009137\|Ga0066709_101497648	All Organisms → cellular organisms → Bacteria → Proteobacteria	974	Open in IMG/M
3300010046\|Ga0126384_10242316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1453	Open in IMG/M
3300010048\|Ga0126373_11565973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300010048\|Ga0126373_11674144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	700	Open in IMG/M
3300010048\|Ga0126373_12986237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300010321\|Ga0134067_10215542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	711	Open in IMG/M
3300010360\|Ga0126372_10418606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1229	Open in IMG/M
3300010366\|Ga0126379_11682425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	739	Open in IMG/M
3300010366\|Ga0126379_11841410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	709	Open in IMG/M
3300010375\|Ga0105239_11395934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	808	Open in IMG/M
3300010398\|Ga0126383_11812646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	699	Open in IMG/M
3300010400\|Ga0134122_11005834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	817	Open in IMG/M
3300010401\|Ga0134121_10191526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1765	Open in IMG/M
3300012201\|Ga0137365_10118573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1990	Open in IMG/M
3300012205\|Ga0137362_10829979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	791	Open in IMG/M
3300012206\|Ga0137380_11441342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300012208\|Ga0137376_11374234	All Organisms → cellular organisms → Bacteria → Proteobacteria	597	Open in IMG/M
3300012353\|Ga0137367_10118114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1948	Open in IMG/M
3300012354\|Ga0137366_10271871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1252	Open in IMG/M
3300012358\|Ga0137368_10310674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1062	Open in IMG/M
3300012916\|Ga0157310_10343142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300012923\|Ga0137359_10271580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1511	Open in IMG/M
3300012927\|Ga0137416_10810942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	828	Open in IMG/M
3300012927\|Ga0137416_10944300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	768	Open in IMG/M
3300012929\|Ga0137404_11061428	Not Available	742	Open in IMG/M
3300012939\|Ga0162650_100028591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	842	Open in IMG/M
3300012948\|Ga0126375_11199357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	631	Open in IMG/M
3300012948\|Ga0126375_11229571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	625	Open in IMG/M
3300012957\|Ga0164303_10053545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1802	Open in IMG/M
3300012971\|Ga0126369_13688560	Not Available	502	Open in IMG/M
3300015374\|Ga0132255_101949670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	893	Open in IMG/M
3300016319\|Ga0182033_10937970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	768	Open in IMG/M
3300016341\|Ga0182035_11213314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	674	Open in IMG/M
3300016422\|Ga0182039_10182646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1657	Open in IMG/M
3300016422\|Ga0182039_10192998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1618	Open in IMG/M
3300018433\|Ga0066667_10127255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1753	Open in IMG/M
3300021372\|Ga0213877_10062154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1091	Open in IMG/M
3300021560\|Ga0126371_10691047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1169	Open in IMG/M
3300025914\|Ga0207671_10315886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1236	Open in IMG/M
3300025941\|Ga0207711_11103392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	734	Open in IMG/M
3300025960\|Ga0207651_12077680	Not Available	510	Open in IMG/M
3300026041\|Ga0207639_11074891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	754	Open in IMG/M
3300026552\|Ga0209577_10081901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2653	Open in IMG/M
3300026557\|Ga0179587_10846670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	603	Open in IMG/M
3300027812\|Ga0209656_10246235	All Organisms → cellular organisms → Bacteria → Proteobacteria	847	Open in IMG/M
3300028536\|Ga0137415_10604561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	907	Open in IMG/M
3300028717\|Ga0307298_10122182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	747	Open in IMG/M
3300028793\|Ga0307299_10012862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2963	Open in IMG/M
3300028802\|Ga0307503_10806901	Not Available	536	Open in IMG/M
3300031544\|Ga0318534_10790079	Not Available	533	Open in IMG/M
3300031545\|Ga0318541_10687298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	571	Open in IMG/M
3300031640\|Ga0318555_10704639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300031679\|Ga0318561_10481205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	683	Open in IMG/M
3300031680\|Ga0318574_10657012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	614	Open in IMG/M
3300031681\|Ga0318572_10382751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	836	Open in IMG/M
3300031736\|Ga0318501_10686787	Not Available	564	Open in IMG/M
3300031740\|Ga0307468_102237723	Not Available	530	Open in IMG/M
3300031744\|Ga0306918_11124845	Not Available	608	Open in IMG/M
3300031751\|Ga0318494_10361315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	841	Open in IMG/M
3300031763\|Ga0318537_10161550	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300031765\|Ga0318554_10793591	Not Available	529	Open in IMG/M
3300031771\|Ga0318546_11296387	Not Available	511	Open in IMG/M
3300031771\|Ga0318546_11351851	Not Available	500	Open in IMG/M
3300031781\|Ga0318547_10415817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	826	Open in IMG/M
3300031794\|Ga0318503_10320634	Not Available	504	Open in IMG/M
3300031796\|Ga0318576_10014023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3036	Open in IMG/M
3300031797\|Ga0318550_10016481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2972	Open in IMG/M
3300031797\|Ga0318550_10655365	Not Available	503	Open in IMG/M
3300031798\|Ga0318523_10540191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	576	Open in IMG/M
3300031832\|Ga0318499_10406726	Not Available	520	Open in IMG/M
3300031845\|Ga0318511_10081808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1349	Open in IMG/M
3300031890\|Ga0306925_10221884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2038	Open in IMG/M
3300031894\|Ga0318522_10158104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	855	Open in IMG/M
3300031896\|Ga0318551_10892988	Not Available	518	Open in IMG/M
3300031897\|Ga0318520_10178185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1245	Open in IMG/M
3300031913\|Ga0310891_10366608	Not Available	519	Open in IMG/M
3300031947\|Ga0310909_10071743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2722	Open in IMG/M
3300031981\|Ga0318531_10480007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	563	Open in IMG/M
3300032010\|Ga0318569_10378758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	659	Open in IMG/M
3300032025\|Ga0318507_10334257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	659	Open in IMG/M
3300032076\|Ga0306924_11206086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	818	Open in IMG/M
3300032089\|Ga0318525_10572700	Not Available	577	Open in IMG/M
3300032094\|Ga0318540_10657271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	505	Open in IMG/M
3300033290\|Ga0318519_10036135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2375	Open in IMG/M
3300033551\|Ga0247830_10147723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1714	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.49%
Host-Associated	Host-Associated	20.51%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.78%
Plants	Host-Associated → Plants	20.51%
Aquatic	Environmental → Aquatic	1.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.26%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.69%
Roots	Host-Associated → Plants → Roots	2.56%
Freshwater	Environmental → Aquatic → Freshwater	0.85%
Sediment	Environmental → Aquatic → Sediment	0.85%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.36%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.84%
Loam	Environmental → Terrestrial → Soil → Loam	2.56%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.56%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.04%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.27%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.56%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.71%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.85%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.27%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	4.27%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.27%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.56%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.56%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.71%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.85%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.85%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300001989	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5	Host-Associated	Open in IMG/M
3300002073	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4	Host-Associated	Open in IMG/M
3300002074	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1	Host-Associated	Open in IMG/M
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated	Open in IMG/M
3300002076	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3	Host-Associated	Open in IMG/M
3300002155	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7	Host-Associated	Open in IMG/M
3300002239	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2	Host-Associated	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10448013	3300000580	Forest Soil	MRIVLLGLAMVIMAAGAPRGAAGAXIKVLTAGAFKQVLLALLPDF
AF_2010_repII_A100DRAFT_10218521	3300000655	Forest Soil	MRIVSLGIAMVIMAAGAPRGAAGAEIKVLTAGAFKQ
AF_2010_repII_A001DRAFT_101345682	3300000793	Forest Soil	MRTVLLGLAMVVMAAGAPRGAAGAEIKVLTAGAFKQV
JGI24739J22299_101134531	3300001989	Corn Rhizosphere	MFAVMEEQMRMTLVGVAMVLMAAGAPRGVAAAEIKVLTAGAFKQVLLVLVPEFEKQT
JGI24745J21846_10255352	3300002073	Corn, Switchgrass And Miscanthus Rhizosphere	MFAVMEEQMRMTLVGVAMVLMAAGAPRGVAAAEIKVLTAGAFKQVLLVLVPEFEK
JGI24748J21848_10479782	3300002074	Corn, Switchgrass And Miscanthus Rhizosphere	MFAVMEEQMRMTLVGVAMVLMAAGAPRGVAAAEIKVL
JGI24738J21930_100195993	3300002075	Corn Rhizosphere	MFAVMEEQMRMTLVGVAMVLMAAGAPRGVAAAEIKVLTAGAFK
JGI24749J21850_10069963	3300002076	Corn, Switchgrass And Miscanthus Rhizosphere	MFAVMEEQMRMTLVGVAMVLMAAGAPRGVAAAEIKXLTAGAFKQV
JGI24033J26618_10115013	3300002155	Corn, Switchgrass And Miscanthus Rhizosphere	MFAVMEEQMRMTLVGVAMVLMAAGAPRGVAAAEIKV
JGI24034J26672_100271142	3300002239	Corn, Switchgrass And Miscanthus Rhizosphere	MFAVMEEQMRMTLVGVAMVLMAAGAPRGVAAAEIKVLTAGAFKQ
Ga0066396_100211143	3300004267	Tropical Forest Soil	MRILAMGVAMVMAAGAPRAGAAAEIKVLTAGAFKQVLLTLLPDFER
Ga0063356_1063943722	3300004463	Arabidopsis Thaliana Rhizosphere	MEDEMRMTVLSAAILLMAAGAPRGAAAAEIKVLTAGAFKQ
Ga0062594_1022723901	3300005093	Soil	MEEQMRMTLLGVAMVLMAAGEPRGVAAAEIKVLTAGAFKQ
Ga0008090_156842082	3300005363	Tropical Rainforest Soil	MWQAVEDVMRIVLLGLAMVLMAAGAPRAAAAAEIKVLTAGAFKQ
Ga0070710_100783411	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MFAVMEEQMRMTLVGVAMVLMAAGAPRGVAAAEIKVLTAG
Ga0068855_1018111131	3300005563	Corn Rhizosphere	MFAVMEEQMRMTLLGVAMVLMAAGAPRGVAAAEIKVLTAGAFKQVLLVLVPEFE
Ga0066654_106947362	3300005587	Soil	MLTLGLAMVIMGAGAPRAAAAAEIKVLTAGAFKQV
Ga0068866_114596571	3300005718	Miscanthus Rhizosphere	MFAVMEEQMRMTLLGVAMVLMAAGAPRGVAAAEIKVLTA
Ga0075368_101270104	3300006042	Populus Endosphere	MFAVMEEQMRMTLLGVAMVLMAAGAPRGVAAAEIKVLTAGAFKQVLLVLVPEFEKQ
Ga0075028_1010932182	3300006050	Watersheds	MRIMLLGLAMVLMGGGAPRAAAAAEIKVLTAGAFKQVLLALLPDFE
Ga0070712_1014560353	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRMTVLSAAILLMATGAPRGAAAAEIKVLTAGAFKQVLL
Ga0075367_110580892	3300006178	Populus Endosphere	MFAVMEEQMRMTLLGVAMVLIAAGAPRGVAAAEIKVLTAGAFKQVLL
Ga0075367_110640351	3300006178	Populus Endosphere	MRTMLVGIAMVLIGAGAARPAAAAEIKVLTAGAFK
Ga0074051_100765293	3300006572	Soil	MRTMMVTMAIMLSAAAASPGAAAAEIKVLTAGAFKQ
Ga0066660_102530451	3300006800	Soil	MRTMLVTMFIMLTAAGASRGANAAEIKVLTAGAFKQVLLA
Ga0075428_1026772641	3300006844	Populus Rhizosphere	MRMTVLALAMVLLAAGAPRGAAAAEIKVLTAGAFKQVLLALAP
Ga0075431_1012601421	3300006847	Populus Rhizosphere	MPPIMEDDMKKTLLGLAIVLAAAGAPRGAAAAEIKVLTAGAFKQVL
Ga0075434_1025983531	3300006871	Populus Rhizosphere	MFAVMEEQMRMTLVGVAMVLMAAGAPRGVAAAEIKVLTAGAFKQV
Ga0075429_1016777171	3300006880	Populus Rhizosphere	MRTMLVGIAMVLIGAGVARPAAAAEIKVLTAGAFK
Ga0099828_114652311	3300009089	Vadose Zone Soil	MTVLTFAVVLVAAGASRGAACAEIKVLTAGAFKQVLLALLP
Ga0099827_111205311	3300009090	Vadose Zone Soil	MENGMRMTLFGVAVVLMAAGAPRGAAAAEIKVLTAG
Ga0075418_110425351	3300009100	Populus Rhizosphere	MRATREDDMRMTVLALAMVLLAAGAPRGAAAAEIKVLTAGAFKQVLLAL
Ga0066709_1014976483	3300009137	Grasslands Soil	MLVKMLIMLGAAAASPGAAAAEIKVLTAGAFKQVLLALMPDFE
Ga0126384_102423165	3300010046	Tropical Forest Soil	MWQAVEDAMRIVLLGLAMVLMAAGAPRAAAAAEIKVLTAGAFKQVLLA
Ga0126373_115659731	3300010048	Tropical Forest Soil	MEDVMRIVLLGLAMVVMAAGGPREAAAAEIKVLTAGAFKQVL
Ga0126373_116741441	3300010048	Tropical Forest Soil	MEDVMRTVFLGLAMVLMAAGAPRAAAGAEIKVLTAGAFKQVLL
Ga0126373_129862371	3300010048	Tropical Forest Soil	MEEAMRTMLVGLAMVLIGAGAARPAAAAEIKVLTAGAFKQVL
Ga0134067_102155422	3300010321	Grasslands Soil	MLVGLAMVLIGAGAARPAAAAEIKVLTAGAFKQVLLAL
Ga0126372_104186061	3300010360	Tropical Forest Soil	MEEAMRAMLVGLAMVLIGAGAARPAAAAEIKVLTAGAFKQVLLAL
Ga0126379_116824251	3300010366	Tropical Forest Soil	MWQAVEDVMRTVLLGLAMVLMAAGAPRAAAAAEIKVLTAGAFKQV
Ga0126379_118414101	3300010366	Tropical Forest Soil	MVKTVEDGMRMTLLGLAVLAFAAGAPRGGAAAEIKVLTAGAFKQVLL
Ga0105239_113959342	3300010375	Corn Rhizosphere	MEEAMRTMLVGIAMVLIGAGAARPAAAAEIKVLTAG
Ga0126383_118126462	3300010398	Tropical Forest Soil	MWQAMEEAMQIMLLGLAMVVMGAGASRPAAAAEIKVLTAGAFKQVLLALLP
Ga0134122_110058341	3300010400	Terrestrial Soil	MKITLLSLAVLLMAAGAPRGAAAAEIKVLTAGAFKQVVVAL
Ga0134121_101915261	3300010401	Terrestrial Soil	MFAVMEEQMRMTLVGVAMVLMAAGAPRGVAAAEIKVLTAGAFKQVLLVLVPE
Ga0137365_101185731	3300012201	Vadose Zone Soil	MEEAMQIMLLGLAMVIMAAGAPRSAAAAEIKVLTAGAFKQ
Ga0137362_108299791	3300012205	Vadose Zone Soil	VRRTGLAALLAIGVMAAAPVDAAEIKVLTAGAFKQVLLAELPG
Ga0137380_114413422	3300012206	Vadose Zone Soil	MEEAMRMLTLGLAMVVMGAGAPRAAAAAEIKVLTAGAF
Ga0137376_113742341	3300012208	Vadose Zone Soil	MLIMLSAAAASPGIAAAEIKVLTAGAFKQVLLPLLPD
Ga0137367_101181145	3300012353	Vadose Zone Soil	MEDVMRTVLLGFAMVLMAAGTPRAAAGAEIKVLTAGAFKQVLLAL
Ga0137366_102718713	3300012354	Vadose Zone Soil	MEEAMQIMLLGLAMVIMAAGAPRSAAAAEIKVLTAGAFKQVLLALVPD
Ga0137368_103106741	3300012358	Vadose Zone Soil	MEDVMRTVLLGFAMVLMAAGTPRAAAGAEIKVLTAG
Ga0157310_103431422	3300012916	Soil	MEDEMRMTVLSAAILLTAAGAPRGAAAAEIKVLTAGA
Ga0137359_102715804	3300012923	Vadose Zone Soil	MEDVMRIVLLGLAMVVMAAGAPRGAAGAEIKVLTAGAFKQVLLAL
Ga0137416_108109422	3300012927	Vadose Zone Soil	MEDVMRIVLLGLAMVLMAAGAPRGAAGAEIKVLTAGAFKQVLLALVPDF
Ga0137416_109443001	3300012927	Vadose Zone Soil	MEEAMRIMLLGLAMVLMGGGAPRAAAAAEIKVLTAGAFKQVLLA
Ga0137404_110614281	3300012929	Vadose Zone Soil	MEEAMQIMLLGLAMVIMAAGAPRSAAAAEIKVLTAGAFKQVLLAL
Ga0162650_1000285911	3300012939	Soil	MEEQMRMTLLGVAMVLMAAGVPRGAAAAEIKVLTAGAFKQVLLALVPDF
Ga0126375_111993571	3300012948	Tropical Forest Soil	MWQAVEDVMRTVLLGLAMVLMAAGAPRAAAAAEIKVLTAGAFKQVLLALVP
Ga0126375_112295711	3300012948	Tropical Forest Soil	MRATREDDMRMTVLALAMVLLAAGAPRGAAAAEIKVLTAGAFKQV
Ga0164303_100535454	3300012957	Soil	MFAVMEEQMRMTLVGVAMVLMAAGAPRGVAAAEIKVLTAGAFKQVLLVLVPEFE
Ga0126369_136885602	3300012971	Tropical Forest Soil	MWQAMEDAMRIMLLGLAMVLMAAGAPRAAAAAEIKVLTAGAFKQVLLA
Ga0132255_1019496702	3300015374	Arabidopsis Rhizosphere	MRATREDDMRMTVLALAMVLLAAGAPRGAAAAEIKVLTAGAFKQVLLA
Ga0182033_109379701	3300016319	Soil	MRMSVCILAMAAAAAVMPGGAQAAEIKVLTAGAFKQ
Ga0182035_112133142	3300016341	Soil	MRIVLLGIAMVVMAAGAPRGAAGAEIKVLTAGAFKQVLLALLPDFERA
Ga0182039_101826461	3300016422	Soil	MRIMLLGLAMVVMGAGVSRPAAAAEIRVLTAGAFKQVLLA
Ga0182039_101929984	3300016422	Soil	MRMTALTFAIVLMAVGASRGAACAEIKVLTAGAFKQVLLAMLPQF
Ga0066667_101272551	3300018433	Grasslands Soil	MQIMLLGLAMVIMAAGAPRSAAAAEIKVLTAGAFKQ
Ga0213877_100621541	3300021372	Bulk Soil	MRTVLLGFAMVLMAAGAPRGAAAAEIKVLSAGAFKQVVLALV
Ga0126371_106910471	3300021560	Tropical Forest Soil	MRAMLVGLAMVLIGAGAARPAAAAEIKVLTAGAFKQVLLALLP
Ga0207671_103158863	3300025914	Corn Rhizosphere	MFAVMEEQMRMTLVGVAMVLMAAGAPRGVAAAEIKVLTAGAFKQVL
Ga0207711_111033922	3300025941	Switchgrass Rhizosphere	MFAVMEEQMRMTLVGVAMVLMAAGAPRGVAAAEIKVLT
Ga0207651_120776801	3300025960	Switchgrass Rhizosphere	MFAVMEEQMRMTLLGVAMVLMAAGEPRGVAAAEIKVLTAGAFKQVLLVLVPEFEK
Ga0207639_110748912	3300026041	Corn Rhizosphere	MFAVMEEQMRMTLLGVAMVLMAAGAPRGVAAAEIKVLTAGAFKQVLLVLVPEFEK
Ga0209577_100819016	3300026552	Soil	MRTMVLSLAIMLVAAAAPRGAGAAEIKVLTAGAFK
Ga0179587_108466702	3300026557	Vadose Zone Soil	MRTMLVGLAMVLIGAGAPRPAAAAEIKVLTAGAFKQVLL
Ga0209656_102462351	3300027812	Bog Forest Soil	LQRTTLTLALVLIAAASSRGAAGAEIKVLSAGAFK
Ga0137415_106045611	3300028536	Vadose Zone Soil	MRIMLLGLAMVLMGGGAPRAAAAAEIKVLTAGAFKQVLLAL
Ga0307298_101221821	3300028717	Soil	MTLLGVAMVLMAAGAPRGAAAAEIKVLTAGAFKQV
Ga0307299_100128625	3300028793	Soil	MFAVMEEQMRMTLLGVAMVLMAAGAPRGVAAAEIKVLTAGAFKQVLLV
Ga0307503_108069012	3300028802	Soil	MSLLGLAAVLMAAGAPSGAKAADIKVLTAGAFKQVV
Ga0318534_107900792	3300031544	Soil	MRRVLLGLAMVVMAAGAPRGAAGAEIKVLTAGAFKQVLL
Ga0318541_106872981	3300031545	Soil	MRTVLLGLAMVLMAAGVPRAAAGAEIKVLTAGAFK
Ga0318555_107046392	3300031640	Soil	MRTVLLGLAMVLMAAGVPRAAAGAEIKVLTAGAFKQVL
Ga0318561_104812051	3300031679	Soil	MRIVLLGLAMVLMAAGAPRGAAGAEIKVLTAGAFKQVLLAL
Ga0318574_106570121	3300031680	Soil	MRTVLLGLAMVLMAAGVPRAAAGAEIKVLTAGAFKQVLLAL
Ga0318572_103827513	3300031681	Soil	MRMTALTFAIVLMAVGASRGAACAEIKVLTAGAFKQVLLAMLPQFEPQSG
Ga0318501_106867871	3300031736	Soil	MRTVLLGFAMVLMAAGAPRAAAGAEIKVLTAGAFKQVL
Ga0307468_1022377231	3300031740	Hardwood Forest Soil	MRMSLLGLAIMLMAAGAPRGAGAAEIKVLTAGAFKQS
Ga0306918_111248451	3300031744	Soil	MTSLGLAVVLMAAGVPRAGAAAEIKVLTAGAFKQVVLALVPGFEK
Ga0318494_103613152	3300031751	Soil	MRVMLLSLATMLLAAGAPRGAASAEIKVLTAGAFKQVLLALLP
Ga0318537_101615501	3300031763	Soil	MRTVLLGFAMALMAAAAPRAAAGAEIKVLTAGAFK
Ga0318554_107935912	3300031765	Soil	MRRVLLGLAMVVMAAGAPRGAAGAEIKVLTAGAFKQVLLALL
Ga0318546_112963871	3300031771	Soil	MRIVLLGLAMVVMAAGAPRGAAGAEIKVLTAGAFKQVLLALL
Ga0318546_113518511	3300031771	Soil	MRIVLLGLAMVLMAAGAPRGAAGAEIKVLTAGAFKQVLLA
Ga0318547_104158172	3300031781	Soil	MRIMLLGLAMVVMGAGVSRPAAAAEIKVLTAGAFKQVL
Ga0318503_103206342	3300031794	Soil	MRMTALTFAIVLMAVGASRGAACAEIKVLTAGAFKQVLLAMLPQFEPQSGH
Ga0318576_100140237	3300031796	Soil	MRIVLLGLAMVLMAAGAPRGAAGAEIKVLTAGAFK
Ga0318550_100164811	3300031797	Soil	MRIVLLGLAMVVMAAGAPRGAAGAEIKVLSAGSHD
Ga0318550_106553651	3300031797	Soil	MRRVLLGLAMVVMAAGAPRGAAGAEIKVLTAGAFKQVLLALLPDFERTS
Ga0318523_105401912	3300031798	Soil	MRIMLLGLAMVVMGAGVSRPAAAAEIKVLTAGAFK
Ga0318499_104067261	3300031832	Soil	MRIVLLRLAMVVMAAGAPRGAAGAEIKVLTAGAFKQVLLALLPDFERA
Ga0318511_100818081	3300031845	Soil	MRIVLLGLAMVVMAAGAPRGAAGAEIKVLSAGAFKQVLLA
Ga0306925_102218841	3300031890	Soil	MRTVLLGLAMVLMAAGVPRAAAGAEIKVLTAGAFKQVLLALV
Ga0318522_101581042	3300031894	Soil	MRVMLLSLATMLLAAGAPRGAASAEIKVLTAGAFKQ
Ga0318551_108929881	3300031896	Soil	MRIVLLGLAMVVMAAGAPRGAAGAEIKVLTAGAFKQ
Ga0318520_101781853	3300031897	Soil	MRIVLLGLAMVVMAAGGPREAAAAEIKVLTAGAFKQVLLALL
Ga0310891_103666081	3300031913	Soil	MRMTLVGVAMVLMAAGAPRGVAAAEIKVLTAGAFKQVLL
Ga0310909_100717435	3300031947	Soil	MRTVLLGLAMVLMAAGVPRAAAGAEIKVLTAGAFKQVLLA
Ga0318531_104800071	3300031981	Soil	MRIVLLGLAMVLMAAGAPRGAAGAEIKVLTAGAFKQVLLALLPDF
Ga0318569_103787582	3300032010	Soil	MRIVLLGIAMVVMAAGAPRGAAGAEIKVLTAGAFK
Ga0318507_103342571	3300032025	Soil	MRTVLLGLAMVVMAAGAPRGAAGAEIEVLTAGAFK
Ga0306924_112060861	3300032076	Soil	MRIVLLGLAMVLMAAGAPRGAAGAEIKVLTAGAFKQV
Ga0318525_105727001	3300032089	Soil	MRMTALTFAIVLMAVGASRGAACAEIKVLTAGAFKQVLLAMLPQFE
Ga0318540_106572712	3300032094	Soil	MSLSMRIVALAVAFIMAVAPRHAACAEIKVLTAGAFKQVLLALL
Ga0318519_100361351	3300033290	Soil	MRIVLLGIAMVVMAAGAPRGAAGAEIKVLTAGAFKQVLLALLPDFERADRVVCDRHLVA
Ga0247830_101477234	3300033551	Soil	MFVVMEEQMRMTLVGVAMVLMAAGAPRGVAAAEIKVLTAGAFKQVLLALVPE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077576

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences