Metagenome Family F077563

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077563
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	46 residues
Representative Sequence	MRLLIDTNGVQFRVAGPAKPKQDYKDKERQATTRDGEPIWTVRLDAI
Number of Associated Samples	96
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.15 %
% of genes near scaffold ends (potentially truncated)	97.44 %
% of genes from short scaffolds (< 2000 bps)	94.87 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.487 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.479 % of family members)
Environment Ontology (ENVO)	Unclassified (34.188 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (43.590 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.00% β-sheet: 2.67% Coil/Unstructured: 93.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF00392	GntR	32.48
PF07702	UTRA	23.93
PF01381	HTH_3	10.26
PF03992	ABM	5.13
PF13560	HTH_31	3.42
PF03091	CutA1	2.56
PF01230	HIT	2.56
PF02026	RyR	0.85
PF06325	PrmA	0.85
PF00293	NUDIX	0.85
PF00589	Phage_integrase	0.85
PF00144	Beta-lactamase	0.85
PF13683	rve_3	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG1324	Divalent cation tolerance protein CutA	Inorganic ion transport and metabolism [P]	2.56
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.85
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.85
COG2264	Ribosomal protein L11 methylase PrmA	Translation, ribosomal structure and biogenesis [J]	0.85
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.85
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	0.85
COG3897	Protein N-terminal and lysine N-methylase, NNT1/EFM7 family	Posttranslational modification, protein turnover, chaperones [O]	0.85

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.20 %
Unclassified	root	N/A	18.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.49 %
Unclassified	root	N/A	18.80 %
Viruses	superkingdom	All Organisms → Viruses	1.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.49 %
Unclassified	root	N/A	18.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.71 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	78.63 %
Unclassified	root	N/A	18.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.71 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.85 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	76.92 %
Unclassified	root	N/A	18.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.71 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.85 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	55.56 %
Unclassified	root	N/A	18.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.71 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.80 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	17.09 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.56 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.71 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.80 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	17.09 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.56 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.71 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.80 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	17.09 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.56 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.71 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.80 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	17.09 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.56 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.71 %
Streptomyces violaceusniger group	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces violaceusniger group	0.85 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.80 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	17.09 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.56 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.71 %
Streptomyces rapamycinicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces violaceusniger group → Streptomyces rapamycinicus	0.85 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.80 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	17.09 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.56 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.71 %
Streptomyces rapamycinicus NRRL 5491	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces violaceusniger group → Streptomyces rapamycinicus → Streptomyces rapamycinicus NRRL 5491	0.85 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004091\|Ga0062387_101698401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	513	Open in IMG/M
3300004091\|Ga0062387_101744343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	507	Open in IMG/M
3300004092\|Ga0062389_104573542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	521	Open in IMG/M
3300004152\|Ga0062386_100188701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1619	Open in IMG/M
3300005162\|Ga0066814_10054943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	665	Open in IMG/M
3300005445\|Ga0070708_101752312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	577	Open in IMG/M
3300005841\|Ga0068863_102366598	Not Available	541	Open in IMG/M
3300006028\|Ga0070717_11997391	Not Available	523	Open in IMG/M
3300006028\|Ga0070717_12165411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	500	Open in IMG/M
3300006175\|Ga0070712_102038304	Not Available	502	Open in IMG/M
3300006755\|Ga0079222_12510021	Not Available	517	Open in IMG/M
3300009553\|Ga0105249_13391462	Not Available	513	Open in IMG/M
3300010360\|Ga0126372_11532626	Not Available	703	Open in IMG/M
3300010360\|Ga0126372_12036178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	621	Open in IMG/M
3300010361\|Ga0126378_12531236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	586	Open in IMG/M
3300010371\|Ga0134125_11401422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	762	Open in IMG/M
3300010373\|Ga0134128_10757577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1077	Open in IMG/M
3300010375\|Ga0105239_10963066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	980	Open in IMG/M
3300010376\|Ga0126381_104771406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	521	Open in IMG/M
3300012096\|Ga0137389_11766610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	514	Open in IMG/M
3300012201\|Ga0137365_11095078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M
3300012206\|Ga0137380_10855796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	783	Open in IMG/M
3300012207\|Ga0137381_11494651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	567	Open in IMG/M
3300012210\|Ga0137378_11705440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	536	Open in IMG/M
3300012351\|Ga0137386_10890967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	638	Open in IMG/M
3300012354\|Ga0137366_10699900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	722	Open in IMG/M
3300013296\|Ga0157374_12040533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	600	Open in IMG/M
3300014968\|Ga0157379_12656194	Not Available	502	Open in IMG/M
3300016319\|Ga0182033_11362849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	638	Open in IMG/M
3300016371\|Ga0182034_11798690	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	540	Open in IMG/M
3300016387\|Ga0182040_11796087	Not Available	525	Open in IMG/M
3300016445\|Ga0182038_10464211	All Organisms → Viruses → Predicted Viral	1074	Open in IMG/M
3300016445\|Ga0182038_11181632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	682	Open in IMG/M
3300016445\|Ga0182038_11318190	Not Available	645	Open in IMG/M
3300017822\|Ga0187802_10148677	Not Available	894	Open in IMG/M
3300017943\|Ga0187819_10021964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3718	Open in IMG/M
3300017973\|Ga0187780_10239591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1269	Open in IMG/M
3300017999\|Ga0187767_10364506	All Organisms → cellular organisms → Bacteria → Terrabacteria group	512	Open in IMG/M
3300018021\|Ga0187882_1419300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	507	Open in IMG/M
3300018085\|Ga0187772_10438900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	913	Open in IMG/M
3300020582\|Ga0210395_10690671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	764	Open in IMG/M
3300021178\|Ga0210408_10325961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1225	Open in IMG/M
3300021181\|Ga0210388_10585436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	977	Open in IMG/M
3300021405\|Ga0210387_11387450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	605	Open in IMG/M
3300021407\|Ga0210383_10359252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1256	Open in IMG/M
3300021407\|Ga0210383_10976141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	719	Open in IMG/M
3300021478\|Ga0210402_11180719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	693	Open in IMG/M
3300021560\|Ga0126371_10870635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1046	Open in IMG/M
3300021560\|Ga0126371_11095908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	936	Open in IMG/M
3300021560\|Ga0126371_13044917	Not Available	567	Open in IMG/M
3300025922\|Ga0207646_11693912	All Organisms → cellular organisms → Bacteria → Terrabacteria group	543	Open in IMG/M
3300025929\|Ga0207664_11982965	Not Available	505	Open in IMG/M
3300027676\|Ga0209333_1150929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	625	Open in IMG/M
3300027824\|Ga0209040_10090422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1751	Open in IMG/M
3300028747\|Ga0302219_10226007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	724	Open in IMG/M
3300028807\|Ga0307305_10205018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	906	Open in IMG/M
3300029951\|Ga0311371_11986503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	618	Open in IMG/M
3300030007\|Ga0311338_10747466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	982	Open in IMG/M
3300030013\|Ga0302178_10007924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7138	Open in IMG/M
3300030490\|Ga0302184_10194199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	856	Open in IMG/M
3300030524\|Ga0311357_10292318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1564	Open in IMG/M
3300030524\|Ga0311357_11623374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	543	Open in IMG/M
3300030618\|Ga0311354_10990784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	776	Open in IMG/M
3300031236\|Ga0302324_100429985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1956	Open in IMG/M
3300031236\|Ga0302324_101344800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	940	Open in IMG/M
3300031236\|Ga0302324_102665025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	605	Open in IMG/M
3300031236\|Ga0302324_103042693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	556	Open in IMG/M
3300031543\|Ga0318516_10639288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	606	Open in IMG/M
3300031543\|Ga0318516_10730739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	561	Open in IMG/M
3300031544\|Ga0318534_10371216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	823	Open in IMG/M
3300031564\|Ga0318573_10104130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1459	Open in IMG/M
3300031572\|Ga0318515_10522891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	633	Open in IMG/M
3300031640\|Ga0318555_10121424	Not Available	1388	Open in IMG/M
3300031640\|Ga0318555_10156609	All Organisms → Viruses → Predicted Viral	1221	Open in IMG/M
3300031679\|Ga0318561_10539439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	642	Open in IMG/M
3300031708\|Ga0310686_107298226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1604	Open in IMG/M
3300031708\|Ga0310686_114696459	Not Available	1037	Open in IMG/M
3300031708\|Ga0310686_115190222	Not Available	596	Open in IMG/M
3300031723\|Ga0318493_10395289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	756	Open in IMG/M
3300031736\|Ga0318501_10406157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	736	Open in IMG/M
3300031770\|Ga0318521_10120568	Not Available	1465	Open in IMG/M
3300031771\|Ga0318546_10342132	Not Available	1040	Open in IMG/M
3300031778\|Ga0318498_10545980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	508	Open in IMG/M
3300031782\|Ga0318552_10130219	Not Available	1257	Open in IMG/M
3300031805\|Ga0318497_10775303	Not Available	538	Open in IMG/M
3300031823\|Ga0307478_10122132	Not Available	2042	Open in IMG/M
3300031845\|Ga0318511_10143826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1039	Open in IMG/M
3300031846\|Ga0318512_10291973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	809	Open in IMG/M
3300031880\|Ga0318544_10221721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	730	Open in IMG/M
3300031890\|Ga0306925_11611406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	631	Open in IMG/M
3300031893\|Ga0318536_10520449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces violaceusniger group → Streptomyces rapamycinicus → Streptomyces rapamycinicus NRRL 5491	597	Open in IMG/M
3300031896\|Ga0318551_10316101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	880	Open in IMG/M
3300031897\|Ga0318520_10148230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1358	Open in IMG/M
3300031897\|Ga0318520_10731184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	619	Open in IMG/M
3300031912\|Ga0306921_11136485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	873	Open in IMG/M
3300031941\|Ga0310912_11275143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	558	Open in IMG/M
3300031954\|Ga0306926_10946039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1029	Open in IMG/M
3300032008\|Ga0318562_10451029	Not Available	747	Open in IMG/M
3300032010\|Ga0318569_10043952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1912	Open in IMG/M
3300032052\|Ga0318506_10286102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	731	Open in IMG/M
3300032055\|Ga0318575_10142401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1188	Open in IMG/M
3300032055\|Ga0318575_10476541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	634	Open in IMG/M
3300032059\|Ga0318533_10724636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	730	Open in IMG/M
3300032060\|Ga0318505_10615276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	510	Open in IMG/M
3300032091\|Ga0318577_10455309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	611	Open in IMG/M
3300032160\|Ga0311301_10561210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1664	Open in IMG/M
3300032782\|Ga0335082_10633051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	931	Open in IMG/M
3300032805\|Ga0335078_10291151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2201	Open in IMG/M
3300032805\|Ga0335078_12096961	Not Available	601	Open in IMG/M
3300032805\|Ga0335078_12296675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	565	Open in IMG/M
3300032828\|Ga0335080_10031956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5756	Open in IMG/M
3300032892\|Ga0335081_10127640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3698	Open in IMG/M
3300032893\|Ga0335069_11115447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	869	Open in IMG/M
3300032954\|Ga0335083_10321341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1351	Open in IMG/M
3300032954\|Ga0335083_10454839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1081	Open in IMG/M
3300033134\|Ga0335073_11445135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	668	Open in IMG/M
3300033158\|Ga0335077_11634588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	611	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.73%
Host-Associated	Host-Associated	4.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.89%
Aquatic	Environmental → Aquatic	6.84%
Plants	Host-Associated → Plants	4.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.63%
Peat	Environmental → Terrestrial → Peat	10.26%
Freshwater	Environmental → Aquatic → Freshwater	6.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.68%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.26%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.84%
Loam	Environmental → Terrestrial → Soil → Loam	5.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.03%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.26%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.42%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.48%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	10.26%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	9.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.98%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.27%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.42%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.56%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.71%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.71%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018021	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062387_1016984011	3300004091	Bog Forest Soil	MRLLIDTSGVQFRVCGAAKPRPDFKDKDRQATTRDGEPIWTVRLDAIEPD
Ga0062387_1017443432	3300004091	Bog Forest Soil	MRILIDTSGVQFRVAGAAKARPDFKDKDRQATTRDGEPIWT
Ga0062389_1045735421	3300004092	Bog Forest Soil	MRLLIDTSGVQFRVCGAAKPRPDFKDKDRQATTRDGEPIWTVRLDAIEPDRET
Ga0062386_1001887011	3300004152	Bog Forest Soil	MRLEISTSGYQFRVAGTAKPRPDYKDKTRQATTRDGEPIWTVRLDAIDAGRET
Ga0066814_100549431	3300005162	Soil	MRLLIDTNGVQFRVAGPAKPKQDYKDKERQATTRDGEPIWTVRLDAI
Ga0070708_1017523121	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLIDTNGVQFRVASQAKPKPDYKDKDRQATTRDGEPVWTVRLDAIEPD
Ga0068863_1023665981	3300005841	Switchgrass Rhizosphere	MRLLINTDGVQFRVASPAKPKQDYKDKERQATTRDGAPIWTVRLDAIEPE
Ga0070717_119973912	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLIDTSGIQFRVAGAAKPRPDFKDKERQAADRDGRPI
Ga0070717_121654111	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLIDTSSVQFRVSGQAKPRPDFKDKTGERQATTRDGEPIWTVRLDAIDTERETK
Ga0070712_1020383042	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLINTDGVQFRVAGPAKAKADYKDKDKQATTRDGVPVWTVRLDAIEPEREAR
Ga0079222_125100212	3300006755	Agricultural Soil	MRLLIDTNGVQFRVAGQAKPKQDYKDKERQATTRDGDPIWTVRLDAIEPEREAR
Ga0105249_133914622	3300009553	Switchgrass Rhizosphere	MRLKIDTDGTQFRVAGPVRPKQDYKDKERQAVTRDGEPVWTVRLD
Ga0126372_115326263	3300010360	Tropical Forest Soil	MRLLIDTNGVQFRVAGPAKAKADYKDKERQATTRDGEPI*
Ga0126372_120361782	3300010360	Tropical Forest Soil	MRLLIDTRSLQFRVASAAKPRMDYKDKDRQAKDRDGGPIGTVSLDGIDAERKTKEPIWVEEVVH
Ga0126378_125312361	3300010361	Tropical Forest Soil	MRLLIDTNGVQFRVAGPAKPKLDYKDKERQATTRDGEPVWT
Ga0134125_114014222	3300010371	Terrestrial Soil	MRLLINTDGVQFRVAGPAKAKADYKDNDKQATTRDGVPIWTVRLD
Ga0134128_107575771	3300010373	Terrestrial Soil	MRLLINTDGVQFRVAGPAKAKADYKDKDKQATTRDGVPIWTVRLDAIEPERE
Ga0105239_109630661	3300010375	Corn Rhizosphere	MRLLINTDGVQFRVAGPAKAKQDYKDKDKQATTRDGVPIWTVRLDAIEPEREAR
Ga0126381_1047714061	3300010376	Tropical Forest Soil	MRLLINTDSVQFRVAGSAKAKADYKDKERQATTRDGEP
Ga0137389_117666101	3300012096	Vadose Zone Soil	MRLLIDTSGIQFRVASEVKSRPDYKDKEQQATTRDGLLIWTVRLDA
Ga0137365_110950781	3300012201	Vadose Zone Soil	MRLLIDTSGIQFRVAGMPKERPDFKDKDKQATTKDGLLIWTVRLDAIDTVRETKETIW
Ga0137380_108557962	3300012206	Vadose Zone Soil	MRLLIDTNGIQFRVAGPAKAKPDYKDKDRQATTRDGAPIWTIRLDAIEPER
Ga0137381_114946511	3300012207	Vadose Zone Soil	MRLLINTDGIQFRVAGPAKAKPDYKDKDRQATTRD
Ga0137378_117054401	3300012210	Vadose Zone Soil	MRLLIDASGIQFRVAGAAKPRPDFKDKERQAVSRD
Ga0137386_108909671	3300012351	Vadose Zone Soil	MRLLINTDGVQFRVATQAKPKPDYKDNERQANTRAGEPVWTARL
Ga0137366_106999001	3300012354	Vadose Zone Soil	MRLLIDTSGIQFRVAGAAKPRPDFKDKERQAVNRDGQPIWTVRLDAIDA
Ga0157374_120405331	3300013296	Miscanthus Rhizosphere	MRLLINTDGVQFRVAGPAKAKADYKDKDKQATTRDGVPIW
Ga0157379_126561942	3300014968	Switchgrass Rhizosphere	MRLLINTDGVQFRVAGPAKAKQDYKDKDKQATTRDGVPIWTVRLDAIEPEREARET
Ga0182033_113628492	3300016319	Soil	MRLLIDTNGVQFHVAGPAKAKADYKDKERQATTRDGAPIWTVRLDAIEPEREAR
Ga0182034_117986901	3300016371	Soil	MRLLIDTRSLQFRVASAAKPRMDYKDKDRQAKDRDGR
Ga0182040_117960872	3300016387	Soil	MRLLINTDGVQFRVAGPAKAKPDYKDKDRQATTRDG
Ga0182038_104642111	3300016445	Soil	MRLLIDTNGVQFRVAGPAKAKADYKDKERQATTRD
Ga0182038_111816322	3300016445	Soil	MRLLIETKGVQFRVAGVAKPRPDYKDKSQQAATQDGRPIWTVRLDAIDAERETKETIFV
Ga0182038_113181902	3300016445	Soil	MRLVLKTDGTLFRVAGPVKPKQDYKDKERQATTRDGEPIW
Ga0187802_101486771	3300017822	Freshwater Sediment	MRLLIDTSGVQFRVAGAPKARPDFKDKYRQAVTRDGVPIWTVRLDAIEPE
Ga0187819_100219644	3300017943	Freshwater Sediment	MRLLIDTSGVQFRVAGAPKARPDFKDKDRQAVTRDGVPIWTVRLDAIEP
Ga0187780_102395913	3300017973	Tropical Peatland	MRLLIDTNGVQFRVAGPARPKQDYKDKERQATTRDGEPVWTVRLDAIEPDREA
Ga0187767_103645062	3300017999	Tropical Peatland	MRLLIDTSGIQFRVAGMPKERPDFKDKDKQARDRDGRPIWTV
Ga0187882_14193001	3300018021	Peatland	MRIEIITSGYQFRVAGTAKPRPDFKDKTKQATTRDGVPI
Ga0187772_104389002	3300018085	Tropical Peatland	MRLVLKTDGTQFRVAGPVKPKQDYKDKERQATTRDGEPIWTVRLDAIEPEREARET
Ga0210395_106906712	3300020582	Soil	MRLELKTDGVQFRVASPAKAKQDYKDKERQATTRDGE
Ga0210408_103259611	3300021178	Soil	MRLLIDTNGIQFRVAGPAKAKPDYKDKDRQATTRDGAPIWTVR
Ga0210388_105854363	3300021181	Soil	MRLEIKTDGTQFRVAGAARPRPDYKDKSRQATMQDGRPIWT
Ga0210387_113874502	3300021405	Soil	MRILIDTSGVQFRVAGAAKARPDFKDKDRQATTRDGEPIWTVRLDAIEPERETKET
Ga0210383_103592523	3300021407	Soil	MRLLIKTDGVQFRVAGPAKAKQDYKDKERQATTRDGEPIWTVRLDAIEPDRE
Ga0210383_109761411	3300021407	Soil	MRLLIDTSGVQFRVAGQAKPRPDFKDKERQATTRDGEPIWTVRLDAIEPDRETRETLWV
Ga0210402_111807192	3300021478	Soil	MRLKIDTDGVQFRVAGPAKAKQDYKDKERQATTRDGVPI
Ga0126371_108706351	3300021560	Tropical Forest Soil	MRLLIYTSSIQFRVDGTVTARKDYKDKEQQAKDRDGRLIWTV
Ga0126371_110959082	3300021560	Tropical Forest Soil	MRLLIDTKGVQFRVAGAARPKPDYKDKDRQATTQDGRPIWTVRLDAVDA
Ga0126371_130449171	3300021560	Tropical Forest Soil	MRLKIDTDGTQFRVAGPVRPKQDYKDKERQATTRDGEPIWTVRLDAIEPD
Ga0207646_116939121	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLIDTSGIQFRVAGMPKERPDFKDKDQQARDRDGRPIW
Ga0207664_119829652	3300025929	Agricultural Soil	MRLLIDTSGIQFRVAGSAKPRPDFKDKERQATTPDGRPIWT
Ga0209333_11509292	3300027676	Forest Soil	MRLLIDTSGVQFRVAGPARPKQDYKDKERQATTRDGVPIWTLRLDAI
Ga0209040_100904223	3300027824	Bog Forest Soil	MRLEISTSGYQFRVAGTAKPRPDYKDKTRQATTRDGAPIWTV
Ga0302219_102260072	3300028747	Palsa	MRLELKTDGVQFRVAGAAKPKPDFKDKERQATTRDGEPIWTVRLDAIDHDRETKE
Ga0307305_102050181	3300028807	Soil	MRLELKTDGIQFRVASPAKPKPDYKDKERQATTRDGEPIWTVRLDAIEPDREARETIW
Ga0311371_119865031	3300029951	Palsa	MRLEITTSGYQFRVAGTAKPRPDFKDKTKQATTRDGAPIWTVRLDAI
Ga0311338_107474661	3300030007	Palsa	MQLLIETNGTQFRVASAARPRPDYKDKERQATTRDGRPIWTVRLDAIDAERE
Ga0302178_100079248	3300030013	Palsa	MRLELKTDGVQFRVAGAAKPKPDFKDKERQATTRDGEPIWTVRLDAIDHDRE
Ga0302184_101941991	3300030490	Palsa	MRLLIETSIIQFRVAGAAKPRPDFKDKERQAMSRDGQPIWTVRLDAIDAE
Ga0311357_102923181	3300030524	Palsa	MRLEITTSGYQFRVAGTAKPRPDFKDKTKQATTRDGAPIWTVRLDAIDA
Ga0311357_116233741	3300030524	Palsa	MRLLIDTSGIQFRVAGEVKPRPDFKDKERQATTKDGR
Ga0311354_109907842	3300030618	Palsa	MMRLLIDTSSNQFRVAGAVRPRPDFKDKERQAMSRDGRPIWTVRLDAID
Ga0302324_1004299853	3300031236	Palsa	MRLEITTSGYQFRVAGTAKPRPDFKDKTKQATTRDGAP
Ga0302324_1013448002	3300031236	Palsa	MRLLIDTSGVQFRVSGAAKPKPDFKDKERQATTRDGELIWTVRLDAIDHD
Ga0302324_1026650252	3300031236	Palsa	MRLELKTDGVQFRVAGAAKPKPDFKDKERQATTRDGEPIW
Ga0302324_1030426931	3300031236	Palsa	MRLLIETSSIQFRVAGAAKPRPDFKDKERQAMSRDGQ
Ga0318516_106392882	3300031543	Soil	MRLLIDTNGVQFRVAGPAKAKPDYKDKERQATTRDGEPVWTVRLDAIE
Ga0318516_107307392	3300031543	Soil	MRLLIDTRSLQFRVASAAKPRMDYKDKDRQAKDRDGRPIWTVSLDAIDAERKTK
Ga0318534_103712163	3300031544	Soil	MQLLINTGHVQFRVAGAVKPRMDYKDKDRQAKDRDGRP
Ga0318573_101041301	3300031564	Soil	MRLLIDTDGVQFRVAGPAKAKADYKDKERQATTRDGEPIW
Ga0318515_105228911	3300031572	Soil	MRLLIDTSAVQFRVAGMPKERPDFKDKDKQATNRDGLLIWTLRLDAIDNGRE
Ga0318555_101214241	3300031640	Soil	MRLLIDTDGIQFRVAGPAKAKPDYKDKERQATTRDGEPIWTV
Ga0318555_101566091	3300031640	Soil	MRLLIDTNGVQFRVAGPAKAKPDYKDKERQATTRDGEPVWTVRLDAIEPDREARE
Ga0318561_105394391	3300031679	Soil	MRLLIDTSGVQFRVCGAAKPRPDFKDKDRQATTRDGAPIWT
Ga0310686_1072982261	3300031708	Soil	MRLELKTDGIQFRVAGPAKPKQDYKDKERQATTRDG
Ga0310686_1146964592	3300031708	Soil	MRLKIDTDGTQFRVAGPVRPKQDYKDKERQATTRDGERVWTVRLDAIEPEREARETIWIEVAGEQPRADL
Ga0310686_1151902222	3300031708	Soil	MRLELKTDGTQFRVASPAKPKQDYKDKERQATTRD
Ga0318493_103952892	3300031723	Soil	MRLLIDTRSLQFRVAGAVKPRMDYKDKDRQAKDRDGRPIWTVN
Ga0318501_104061573	3300031736	Soil	MQLLINTGHVQFRVAGAVKPRMDYKDKDRQAKDRDGRPIWTVH
Ga0318521_101205681	3300031770	Soil	MRLLIDTDGIQFRVAGPAKAKPDYKDKERQATTRDGEPIWTVRLDAIEPDREARETI
Ga0318546_103421322	3300031771	Soil	MRLLIDTDGIQFRVAGPAKAKPDYKDKERQATTRDGEPIWTVRLDAIEPD
Ga0318498_105459802	3300031778	Soil	MRLLIDTNGVQFRVAGPAKAKPDYKDKERQATTRDGEPIWTVRLDAIEPDREARE
Ga0318552_101302192	3300031782	Soil	MRLLIDTDGIQFRVAGPAKAKPDYKDKERQATTRDGEPIWTVRLDAIE
Ga0318497_107753031	3300031805	Soil	MRLLINTDGVQFRVAGPAKAKPDYKDKDRQATTRDGVYGHWK
Ga0307478_101221323	3300031823	Hardwood Forest Soil	MRLLIDTSSIQFRVAGTATPRKDYKDKDQQAKDRDGRLIWTVRLDAVDNERETKES
Ga0318511_101438261	3300031845	Soil	MRLLIDTSGVQFRVCGAAKPRPDFKDKDRQATTRDG
Ga0318512_102919732	3300031846	Soil	MRLLIDTRSLQFRVASAAKPRMDYKDKDRQAKDRDGRPIWTVSLDAIDAERKTKEPIWV
Ga0318544_102217211	3300031880	Soil	MRLLIDTSGVQFRVCGAAKPRPDFKDKDRQATTRDGEP
Ga0306925_116114061	3300031890	Soil	MRLLIDTSAVQFRVAGMPKERPDFKDKEKQATNRDGQLIWTLRLDAIDHEHETKE
Ga0318536_105204492	3300031893	Soil	MRLLIDTRSVQFRVAGMPQARADYKDKQRQATDRDGRLIW
Ga0318551_103161011	3300031896	Soil	MRLLIDTSGVQFRVCGAAKPRPDFKDKDRQATTRD
Ga0318520_101482301	3300031897	Soil	MRLLIDTSGVQFRVCGAAKPRPDFKDKDRQATTRDGEPIWTARLDAIER
Ga0318520_107311841	3300031897	Soil	MRLLINTDGVQFRVAGPAKAKPDYKDKDRQATTRDGVYG
Ga0306921_111364851	3300031912	Soil	MRLLIDTDGVQFRVAGPAKAKADYKDKERQATTRDGEPVWTVRLDAIEPDREARETI
Ga0310912_112751431	3300031941	Soil	MRLLIDTDGVQFRVAGPAKAKADYKDKERQATTRDGEPVWTVRLDAIKPDREAR
Ga0306926_109460391	3300031954	Soil	MRLLIETKGVQFRVAGVAKPRPDYKDKSQQAATQDGRPIWTVRLDAIDAERET
Ga0318562_104510293	3300032008	Soil	HVQFRVAGAVKPRMDYKDKDRQAKDRDGRPIWTVHLDAIDTERQTK
Ga0318569_100439521	3300032010	Soil	MRLLIDTSGVQFRVCGAAKPRPDFKDKDRQATTRDGAPIWTVRLD
Ga0318506_102861023	3300032052	Soil	MRLLIDTSGVQFRVCGAAKPRPDFKDKDRQATTRDGAPIW
Ga0318575_101424012	3300032055	Soil	MRLLIDTDGIQFRVAGPAKAKPDYKDKERQATTRDGEPIWT
Ga0318575_104765411	3300032055	Soil	MRLLIETKGVQFRVAGVAKPRPDYKDKSQQAATQDGRPIW
Ga0318533_107246361	3300032059	Soil	MQLLINTGHVQFRVAGAVKPRMDYKDKDRQAKDRDGRPIWTVHLDAID
Ga0318505_106152762	3300032060	Soil	MRLLIDTRSLQFRVASAAKPRMDYKDKDRQAKDRDGRPIWTVSLDAIDAERKTKEPIW
Ga0318577_104553091	3300032091	Soil	MRLLIDTDGIQFRVAGPAKAKADYKDKERQATTRDGEPIWTVRLDA
Ga0311301_105612101	3300032160	Peatlands Soil	MRLLIDTSGIQFRVASAARQRPDFKDKDRQATTKDGLPIWTVRLDAIDGGRETKETIW
Ga0335082_106330513	3300032782	Soil	MRLLIDTNGVQFRVAGPAKAKPDYKDKERQATTRDGE
Ga0335078_102911513	3300032805	Soil	MRLLIDTSGIQFRVAGAARPRPDFRDKERQATTRDGQPIWTVRLDAIDTGR
Ga0335078_120969612	3300032805	Soil	MQLLIDTSSVQFRVASMPKVRPDFKDKDRQATTKDGRPIWVVRL
Ga0335078_122966752	3300032805	Soil	MRLKIDTDGTQFRVAGPVRPKQDYKDKDRQAATRDGEPIWTVRL
Ga0335080_100319561	3300032828	Soil	MRLKIDTDGTQFRVAGPVRPKQDYKDKERQATTRDGEPIWTVRLDAIEPER
Ga0335081_101276404	3300032892	Soil	MRLLIDTGGLQFRVAGAARPRPDFRDKERQATTRDGQPIWTV
Ga0335069_111154472	3300032893	Soil	MRLKIDTDGTQFRVAGPVRPKQDYKDKERQATTRDGEPIWTVRLDAIEPE
Ga0335083_103213411	3300032954	Soil	MRLKIDTDGTQFRVAGPVRPKQDYKDKERQATTRDG
Ga0335083_104548391	3300032954	Soil	MRLEIKTDGTQFRVAGPVRPKQDYKDKDRQATTRDGEPIWTVRLDAIEP
Ga0335073_114451352	3300033134	Soil	MRLLINTDSVQFRVAGPAKAKADYKDKERQATTRDGEPIWTVRLDAIEPEREARETI
Ga0335077_116345881	3300033158	Soil	MLRLKIDTSGTRFRVAGTARPRTDYKDKDRQAATPDGRP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F077563

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences