Basic Information | |
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Family ID | F077548 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 117 |
Average Sequence Length | 38 residues |
Representative Sequence | GDEIVVGSYKALRTLKPESSVKVDNSAPKKQDDQQS |
Number of Associated Samples | 101 |
Number of Associated Scaffolds | 117 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.86 % |
% of genes near scaffold ends (potentially truncated) | 96.58 % |
% of genes from short scaffolds (< 2000 bps) | 89.74 % |
Associated GOLD sequencing projects | 96 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.21 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (58.120 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.077 % of family members) |
Environment Ontology (ENVO) | Unclassified (31.624 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (58.974 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.21 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Lake Sediment Bog Forest Soil Bog Peatland Freshwater Wetlands Freshwater Sediment Iron-Sulfur Acid Spring Watersheds Vadose Zone Soil Tropical Forest Soil Glacier Forefield Soil Grasslands Soil Peatlands Soil Agricultural Soil Soil Grasslands Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Tropical Peatland Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Palsa Switchgrass Rhizosphere Populus Rhizosphere Rhizosphere Arabidopsis Rhizosphere Boreal Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI26345J50200_10398822 | 3300003352 | Bog Forest Soil | TKGLQVGDEIVVGSYKALRTLKPEASVKIDNSAPKKQQDDQQS* |
Ga0062385_112087281 | 3300004080 | Bog Forest Soil | KGLQVGDEIVVGSYKALRTLKPEASVKIDNTAPKKQQDDQQS* |
Ga0062389_1001962773 | 3300004092 | Bog Forest Soil | KGLQVGDEIVVGSYKALRTLKPEASVKIDNSAPKKQQDDQQS* |
Ga0070696_1010250062 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | LQPGDEIVVGSYKALRTLKPEAAVKVDNSAPKKADDQQS* |
Ga0066705_108029491 | 3300005569 | Soil | GDEIVIGSYKALRTLKPEASVKVDNSAPKKPDDSQS* |
Ga0066702_103980991 | 3300005575 | Soil | QGDEIVVGSYKALRTLKPEANVKIDNSAPKKPEDNQS* |
Ga0070762_104730122 | 3300005602 | Soil | QKGDEIVVGSYKALRTLKPESSVKVDNSAPKKAASDDQSS* |
Ga0070762_106348941 | 3300005602 | Soil | QKGDEIVVGSYKALRTLKPEASVKVDNSAPKKTEPDDQSS* |
Ga0070762_112476691 | 3300005602 | Soil | VVGSYKALRTLKPEASVKVDNSAPKKPASDDQSS* |
Ga0075028_1010552802 | 3300006050 | Watersheds | TKGLQAGDEIVVGSYKALRTLKPEATVKVDNTAPKKIEEKE* |
Ga0075019_109623131 | 3300006086 | Watersheds | TKGLQVGDEIVVGSYKALRTLKPEASVKIDNTAPKKQQDDQQS* |
Ga0070765_1001871441 | 3300006176 | Soil | QKGDEIVVGSYKALRTLKPESSVKVDNSAPKKTESDDDKSS* |
Ga0079221_105174731 | 3300006804 | Agricultural Soil | KGDEIVVGSYKALRTLKPESSVKVDNSAPKKTESDDQSS* |
Ga0079220_118835641 | 3300006806 | Agricultural Soil | EIVVGSYKALRTLKPESQVKVDNSAPKKQDDQQS* |
Ga0075425_1022712081 | 3300006854 | Populus Rhizosphere | LQPGDEIVVGSYKALRTLKPEAPIKVDNSAPKKTDDQQS* |
Ga0073928_110164211 | 3300006893 | Iron-Sulfur Acid Spring | QQGDEIVVGSYKALRTLKPESNVKIDNSAPKKPEENQS* |
Ga0099793_100983011 | 3300007258 | Vadose Zone Soil | KGLQSGDEIVVGSYKALRTLKPESSVKIDNSAPKKPEDNQS* |
Ga0099827_112380321 | 3300009090 | Vadose Zone Soil | NDEIITGSYKALRTLRPNATIKVDNKAPKKPEDEKS* |
Ga0116105_11631181 | 3300009624 | Peatland | KGLQAGDEIVIGSYKALRTLKPEASVKVDNTAPKKPDDQQS* |
Ga0126374_101522363 | 3300009792 | Tropical Forest Soil | EIVTGSYKALRTLKPEAMIKIDNSAPKKQEDQQS* |
Ga0126373_131093772 | 3300010048 | Tropical Forest Soil | DGEEIVVGSYKALRTLKPEAAVKVDNSAPKKTEETP* |
Ga0126372_115303891 | 3300010360 | Tropical Forest Soil | EIVIGSYKALRTLKPEAQVKVDNSAPKSQEDQQS* |
Ga0126381_1000384019 | 3300010376 | Tropical Forest Soil | LQPGDEIVIGSYKALRTLKPEAQIKVDNSAPKKQDDQQS* |
Ga0136449_1027684622 | 3300010379 | Peatlands Soil | AESDEIITGCYKVLRTLRDGSSVKVDNTPPKKEES* |
Ga0136449_1041269541 | 3300010379 | Peatlands Soil | KAGDEIVVGSYKALRTLKPESQVKVDNSAPKKQDDQQS* |
Ga0126345_12684431 | 3300010858 | Boreal Forest Soil | DIEITKGLQAGDEIVVGSYKALRTLKPEASVKVDNTAPKKIEEKE* |
Ga0150983_105788391 | 3300011120 | Forest Soil | EIVVGSYKALRTLKPESQVKVDNSAPKKQEDQQS* |
Ga0150983_109389862 | 3300011120 | Forest Soil | DEIVVGSYKALRTLKPESQVKVDNSAPKKQDDQQS* |
Ga0137362_102995452 | 3300012205 | Vadose Zone Soil | DEIVVGSYKALRTLKPEASVKVDNSAPKKPEDSQS* |
Ga0137360_109429372 | 3300012361 | Vadose Zone Soil | DEIVLGSYKALRTLKPESSVKVDNTAPKKTEDQNN* |
Ga0137361_105076111 | 3300012362 | Vadose Zone Soil | PGDEIVTGSYKALRTLKPESDVKVDNSAPKKPEDQQS* |
Ga0134040_13049191 | 3300012389 | Grasslands Soil | EIVIGSYKALRTLKPEAQVKVDNSAPKKQEDQQS* |
Ga0137397_103380531 | 3300012685 | Vadose Zone Soil | GDEIVVGSYKALRTLKPEAAIKVDNSAPKKTDDQQS* |
Ga0137396_101705081 | 3300012918 | Vadose Zone Soil | PGDEIVVGSYKALRTLKPESQVKVDNSAPKKQDDQQG* |
Ga0126375_106864481 | 3300012948 | Tropical Forest Soil | DEIVIGSYKALRTLKPEAQVKVDNSAPKKQEDQQS* |
Ga0153916_113068301 | 3300012964 | Freshwater Wetlands | EIVIGSYKALRTLKPEASVKVDNTPPKKTEDQQS* |
Ga0126369_106953863 | 3300012971 | Tropical Forest Soil | GLQAGDEIVVGSYKALRTLKPEAQIKIDNSAPKKTEDQQS* |
Ga0181531_100609851 | 3300014169 | Bog | IVVGSYKALRTLKPEASVKVDNSAPKKTEPDDQSS* |
Ga0137405_10350211 | 3300015053 | Vadose Zone Soil | PGDEIVVGSYKALRTLKPEAQIKVDNSAPKKTDDQQS* |
Ga0137405_12772481 | 3300015053 | Vadose Zone Soil | SRATGDEIVVGSYKALRTLKPEAQIKVDNSAPKKTDDQQS* |
Ga0137420_10052672 | 3300015054 | Vadose Zone Soil | DEIVVGSYKALRTLKPESQIKVDNSAPKKQDDQQS* |
Ga0137420_13367607 | 3300015054 | Vadose Zone Soil | LQPGDEIVVGSYKALRTLKPEAAIKVDNTAPKKIEEKE* |
Ga0137420_14772255 | 3300015054 | Vadose Zone Soil | LQSGDEIVVGSYKALRTLKPESQVKWTNSAPKKQDDQQS* |
Ga0167631_10532682 | 3300015168 | Glacier Forefield Soil | LQPGDEIVVGSYKALRTLKPASSVKVDNTPPKKPEEEGQS* |
Ga0137418_103545183 | 3300015241 | Vadose Zone Soil | PGDEIVVGSYKALRTLKPEAAIKVDNTAPKKIEEKE* |
Ga0132256_1027316641 | 3300015372 | Arabidopsis Rhizosphere | LQAGDEIVVGSYKALRTLKPEAQIKIDNSAPKKTDDQQS* |
Ga0182036_101924131 | 3300016270 | Soil | LQPGDEIVVGSYKALRTLKPEAPIKVDNSAPKKTEDEQS |
Ga0182041_111214312 | 3300016294 | Soil | DEIVIGSYKALRTLKPEAQVKVDNSAPKSQEDQQS |
Ga0187806_11072851 | 3300017928 | Freshwater Sediment | LQPGDEIVVGSYKVLRTLKNDAPVKIDNTVKKQEES |
Ga0187814_100698301 | 3300017932 | Freshwater Sediment | GVQEGDEIVVGSYKALRTLKPEASIKIDNSAPKKTEETSE |
Ga0187778_101606891 | 3300017961 | Tropical Peatland | QEGEEIVVGSYKALRTLKPEASVKVDNSAAKKVEEQQ |
Ga0187782_100471601 | 3300017975 | Tropical Peatland | GLQSGDEIVVGSYKALRTLKPEASVKVDNTVQKPTEESQ |
Ga0187769_100261711 | 3300018086 | Tropical Peatland | GDLIVTGSYKALRTLKPGAAVKIDNSTPKTEESSSSSSS |
Ga0187771_107529601 | 3300018088 | Tropical Peatland | LQEGDEIVVGSYKALRTLKPEAPVKVDNSVQKKTEESQ |
Ga0066655_100818883 | 3300018431 | Grasslands Soil | PGDEIVVGSYKALRTLKPESQVKVDNSTPKKQEDQQS |
Ga0210407_102320241 | 3300020579 | Soil | ITKGLQPGDEIVVGSYKALRTLKPEADIKIDNTAPKKPEDQQS |
Ga0210399_113701491 | 3300020581 | Soil | DEIVVGSYKALRTLKPEASVKVDNSAPKKTEDQQS |
Ga0210395_107022931 | 3300020582 | Soil | GDEIVVGSYKALRTLKPESSVKVDNSAPKKPDDQQS |
Ga0210401_110716781 | 3300020583 | Soil | DEIVVGSYKALRTLKPESPVKVDNSAPKKQDDQQS |
Ga0210404_104268512 | 3300021088 | Soil | LQVGDEIVVGSYKALRTLKPEASVKIDNSAPKKQQDDQQS |
Ga0210406_105631901 | 3300021168 | Soil | ITKGLQNGDEIVVGSYKALRTLKPESSVKIDNSAPKKPEDTQS |
Ga0210400_108028412 | 3300021170 | Soil | DEIVVGSYKALRTLKPEASVKVDNSAPKKPEDSQS |
Ga0210405_106977551 | 3300021171 | Soil | LQPGDEIVVGSYKALRTLKPESPVKVDNSAPKKQDDQQS |
Ga0210396_103200773 | 3300021180 | Soil | VTKGLQVGDEIVVGSYKALRTLKPEASVKIDNSAPKKQQDDQQS |
Ga0210396_106692492 | 3300021180 | Soil | EITKGLQPGDEIVVGSYKALRTLKPASSVKVDNTVPKKPEEEGQS |
Ga0210388_110609622 | 3300021181 | Soil | TKGLQACDEIVVGSYKALRTLKPEASVKVDNAAPKKTEDSQ |
Ga0210387_112973351 | 3300021405 | Soil | GLQQGDEIVVGSYKALRTLKPEASVKVDNTAPKKTEDQQN |
Ga0210384_116110971 | 3300021432 | Soil | EGDQIVTGSYKALRTLKPGTKLKVDNTVTARDETSGS |
Ga0210392_100381841 | 3300021475 | Soil | VTKGLQVGDEIVVGSYKALRTLKPEASVKIDNTAPKKQQDDQQS |
Ga0210410_101667061 | 3300021479 | Soil | KGLQVGDEIVVGSYKALRTLKPEASVKIDNSAPKKQDDQQS |
Ga0210410_108753331 | 3300021479 | Soil | GVTDIEITKGLQAGDEIVVGSYKALRTLKPEAAIKVDNTAPKKIEEKE |
Ga0210410_114354722 | 3300021479 | Soil | GDEIVVGSYKALRTLKPESSVKVDNSAPKKQDDQQS |
Ga0210409_102055141 | 3300021559 | Soil | PGDEIVVGSYKALRTLKPQSAIKVDNSAPKKMDDQQS |
Ga0233357_10377792 | 3300023056 | Soil | IEITKGLQPGDEIVVGSYKALRTLKPASSVKVDNTVPKKPEDEGQS |
Ga0224544_10193761 | 3300023250 | Soil | QAGDQIITGSYKALRTLKPNSPIKVDNSAPKVPADTDQS |
Ga0207685_101130951 | 3300025905 | Corn, Switchgrass And Miscanthus Rhizosphere | KGLQAGDEIVIGSYKALRTLKPEAAVKVDNTAPKKIEEKE |
Ga0207685_103444412 | 3300025905 | Corn, Switchgrass And Miscanthus Rhizosphere | EVTDGLQTGDEIVVGSYKALRTLKPEAQIKVDNTAPKKPDDQQS |
Ga0207693_112839491 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | KGLQAGDEIVVGSYKALRTLKPEATVKIDNSAPKKTEDQQ |
Ga0209804_10287201 | 3300026335 | Soil | PGDEIVVGSYKALRTLKPESQVKVDNSAPKKQDDQQS |
Ga0257180_10111301 | 3300026354 | Soil | QPGDEIVVGSYKALRTLKPEAQIKVDNSAPKKTDDQQS |
Ga0257169_10269891 | 3300026469 | Soil | LKPGDEIVVGSYKALRTLKPESQIKVDNSAPKKQDDQQS |
Ga0257156_10811772 | 3300026498 | Soil | QPGDEIVVGSYKALRTLKPEAPVKVDNSAPKKTDDQQS |
Ga0209648_102206023 | 3300026551 | Grasslands Soil | AGDEIVVGSYKALRTLKPESQVKVDNSAPKKQDDQQS |
Ga0209648_105337032 | 3300026551 | Grasslands Soil | GDEIVVGSYKALRTLKPESQVKVDNSAPKKQDDQQS |
Ga0209730_10196261 | 3300027034 | Forest Soil | GDEIVVGSYKALRTLKPEASIKIDNSAPKKPEDNQS |
Ga0208095_10026162 | 3300027104 | Forest Soil | GLQEGEEIVIGSYKALRTLKPGASIKVDNTVPKREELTS |
Ga0209332_11019122 | 3300027439 | Forest Soil | TKGLQNGDEIVVGSYKALRTLKPESSVKIDNSAPKKPEDNQS |
Ga0209331_11609262 | 3300027603 | Forest Soil | QGDEIVVGSYKALRTLKPESNVKIDNSAPKKPEENQS |
Ga0209248_102417612 | 3300027729 | Bog Forest Soil | DEIVVGSYKALRTLKPEASVKVDNTAPKKTEDQQN |
Ga0209180_104960061 | 3300027846 | Vadose Zone Soil | QPGDEIVVGNYKALRTLKPEAPIKVDNSAPKKTDDQQS |
Ga0209283_105823051 | 3300027875 | Vadose Zone Soil | LQPGDEIVVGSYKALRTLKPESQVKVDNSAPKKQDDQQS |
Ga0209590_100108851 | 3300027882 | Vadose Zone Soil | NDEIITGSYKALRTLRPNATIKVDNKAPKKPEDEKS |
Ga0209067_100050338 | 3300027898 | Watersheds | GDEIVVGSYKALRTLKPEASVKIDNTAPKKQQDDQQS |
Ga0209048_102611313 | 3300027902 | Freshwater Lake Sediment | GDEIVVGSYKALRTLKPDSTVKIDNSAPKKADDQQ |
Ga0209526_100904153 | 3300028047 | Forest Soil | LQTGDEIVVGSYKALRTLKPQASVKIDNSAPKKPEDNQS |
Ga0247663_10189833 | 3300028145 | Soil | SGDEIVIGSYKALRTLKPEAPIKVDNSAPKKTEDQQS |
Ga0268265_112577012 | 3300028380 | Switchgrass Rhizosphere | GDEIITGSYKILRTLKTDTQIKVDNSSPDKFEKKELL |
Ga0302219_102370321 | 3300028747 | Palsa | DIEIANGIREGDVIVIGSFKALRTLKPGASVKVDNTTPKPEDSSSSS |
Ga0302225_104644492 | 3300028780 | Palsa | AAGDEIVIGSYKALRTLKPQASVKVDNSAPKKPDDQQS |
Ga0265338_104507712 | 3300028800 | Rhizosphere | KGLQPGDEIVVGSYKALRTLKPDSTVKIDNSAPKKTDEQQP |
Ga0222749_103404492 | 3300029636 | Soil | VGDEIVVGSYKALRTLKPEASVKIDNSAPKKQDDQQS |
Ga0170823_108889332 | 3300031128 | Forest Soil | QVGDEIVVGSYKALRTLKPEASVKIDNTAPKKQQDDQQS |
Ga0318541_100297671 | 3300031545 | Soil | DGEDIVVGSYKALRTLKPEAAVKVDNSAPKKTEETQ |
Ga0306917_114754881 | 3300031719 | Soil | GLQEGEEIVIGSYKALRTLKPGTSIKVDNTVPKREELTS |
Ga0307469_101724331 | 3300031720 | Hardwood Forest Soil | IEVTDGLQPGDEIVVGSYKALRTLKPEAPIKVDNTAPKKTDDQQS |
Ga0307469_104381533 | 3300031720 | Hardwood Forest Soil | EITKGLQPGDEIVIGSYKALRTLKPEAAIKVDNTAPKKIEEKE |
Ga0307469_109119162 | 3300031720 | Hardwood Forest Soil | DEIVIGSYKALRTLKPEAPIKVDNSAPKKTEDQQS |
Ga0307469_122236062 | 3300031720 | Hardwood Forest Soil | PGDEIVVGSYKALRTLKPESQIKVDNSAPKKQDDQQS |
Ga0307475_105988771 | 3300031754 | Hardwood Forest Soil | DEIVVGSYKALRTLKPEAQVKVDNSAPKKQDDQQS |
Ga0318551_108923511 | 3300031896 | Soil | GDEIVVGSYKALRTLKPDASVKVDNTVKKTEETNN |
Ga0310911_107044031 | 3300032035 | Soil | QPGDEIVIGSYKALRTLKPEAQVKVDNSAPKSQEDQQS |
Ga0311301_124231282 | 3300032160 | Peatlands Soil | KAGDEIVVGSYKALRTLKPESQVKVDNSAPKKQDDQQS |
Ga0307470_101845003 | 3300032174 | Hardwood Forest Soil | VTKGLQPGDEIVVGSYKALRTLKPNAQIKVDNTAPKKTDDQQS |
Ga0306920_1025049781 | 3300032261 | Soil | GLQAGDEIVVGSYKALRTLKPEASVKIDNSAPKKTEDQQ |
Ga0335080_105892302 | 3300032828 | Soil | LQQGDEIVVGSYKALRTLKPESSVKVDNSAPKKTDDQQN |
Ga0335076_102039161 | 3300032955 | Soil | QKGDEIVVGSYKALRTLKPEASVKVDNSAPKKTASDDQSS |
Ga0335076_102693003 | 3300032955 | Soil | LQVGDEIVTGSYKALRTLKPEASVKIDNSAPKKQDDQQS |
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