Metagenome / Metatranscriptome Family F077537

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077537
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	40 residues
Representative Sequence	TVPQTWRLVLFIRHLPQITPEELNEMKGWDPKSEADPAHF
Number of Associated Samples	91
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.85 %
% of genes near scaffold ends (potentially truncated)	99.15 %
% of genes from short scaffolds (< 2000 bps)	83.76 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.778 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.786 % of family members)
Environment Ontology (ENVO)	Unclassified (32.479 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.974 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.82% β-sheet: 0.00% Coil/Unstructured: 66.18%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF06441	EHN	29.91
PF00378	ECH_1	8.55
PF00106	adh_short	3.42
PF13561	adh_short_C2	2.56
PF01042	Ribonuc_L-PSP	2.56
PF00058	Ldl_recept_b	1.71
PF13450	NAD_binding_8	1.71
PF00202	Aminotran_3	1.71
PF12697	Abhydrolase_6	1.71
PF16694	Cytochrome_P460	1.71
PF12848	ABC_tran_Xtn	0.85
PF13473	Cupredoxin_1	0.85
PF05694	SBP56	0.85
PF03169	OPT	0.85
PF13673	Acetyltransf_10	0.85
PF04551	GcpE	0.85
PF02779	Transket_pyr	0.85
PF14329	DUF4386	0.85
PF03547	Mem_trans	0.85
PF00857	Isochorismatase	0.85
PF01527	HTH_Tnp_1	0.85
PF11755	DUF3311	0.85
PF02954	HTH_8	0.85
PF07238	PilZ	0.85
PF13305	TetR_C_33	0.85
PF04542	Sigma70_r2	0.85
PF00903	Glyoxalase	0.85
PF01116	F_bP_aldolase	0.85
PF08281	Sigma70_r4_2	0.85
PF13426	PAS_9	0.85
PF01520	Amidase_3	0.85
PF00456	Transketolase_N	0.85
PF02844	GARS_N	0.85
PF00072	Response_reg	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	29.91
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	2.56
COG0021	Transketolase	Carbohydrate transport and metabolism [G]	0.85
COG0151	Phosphoribosylamine-glycine ligase	Nucleotide transport and metabolism [F]	0.85
COG0191	Fructose/tagatose bisphosphate aldolase	Carbohydrate transport and metabolism [G]	0.85
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.85
COG0679	Predicted permease, AEC (auxin efflux carrier) family	General function prediction only [R]	0.85
COG0821	4-hydroxy-3-methylbut-2-enyl diphosphate synthase IspG/GcpE	Lipid transport and metabolism [I]	0.85
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	0.85
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.85
COG1297	Predicted oligopeptide transporter, OPT family	General function prediction only [R]	0.85
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.85
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.85
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.85
COG3959	Transketolase, N-terminal subunit	Carbohydrate transport and metabolism [G]	0.85
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.78 %
Unclassified	root	N/A	22.22 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.78 %
Unclassified	root	N/A	22.22 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.78 %
Unclassified	root	N/A	22.22 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	23.08 %
Unclassified	root	N/A	22.22 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.98 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.71 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.22 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.11 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	8.55 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.26 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	7.69 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.85 %
Negativicutes	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes	0.85 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.85 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.85 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.26 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7.69 %
Selenomonadales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales	0.85 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.85 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.85 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.85 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.26 %
Acidicapsa	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa	1.71 %
Sporomusaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Sporomusaceae	0.85 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.85 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.85 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.85 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.85 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.26 %
Acidicapsa ligni	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa ligni	1.71 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	0.85 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.85 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	0.85 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.85 %
Sporomusaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Sporomusaceae	0.85 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.26 %
Acidicapsa ligni	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa ligni	1.71 %
Variovorax sp. PDC80	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. PDC80	0.85 %
Streptomyces avermitilis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces avermitilis	0.85 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	0.85 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.85 %
Sporomusaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Sporomusaceae	0.85 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10219132	Not Available	1244	Open in IMG/M
3300002245\|JGIcombinedJ26739_101867060	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	503	Open in IMG/M
3300005538\|Ga0070731_11117996	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	521	Open in IMG/M
3300005602\|Ga0070762_10007175	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5468	Open in IMG/M
3300005712\|Ga0070764_10643249	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300005712\|Ga0070764_10696596	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300006176\|Ga0070765_100402711	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1277	Open in IMG/M
3300006176\|Ga0070765_100792544	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	895	Open in IMG/M
3300009628\|Ga0116125_1167836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300009632\|Ga0116102_1157564	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300009638\|Ga0116113_1121694	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300009643\|Ga0116110_1080186	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300009672\|Ga0116215_1090863	All Organisms → cellular organisms → Bacteria	1369	Open in IMG/M
3300009698\|Ga0116216_10620025	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300010339\|Ga0074046_10093196	All Organisms → cellular organisms → Bacteria	1948	Open in IMG/M
3300011120\|Ga0150983_14992017	Not Available	699	Open in IMG/M
3300014164\|Ga0181532_10387046	Not Available	778	Open in IMG/M
3300014165\|Ga0181523_10393532	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300014167\|Ga0181528_10220922	Not Available	1023	Open in IMG/M
3300014168\|Ga0181534_10666189	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	605	Open in IMG/M
3300014169\|Ga0181531_10319239	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	951	Open in IMG/M
3300014169\|Ga0181531_10513119	Not Available	740	Open in IMG/M
3300014169\|Ga0181531_10595511	Not Available	685	Open in IMG/M
3300014169\|Ga0181531_10771839	Not Available	599	Open in IMG/M
3300014200\|Ga0181526_10608193	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300014201\|Ga0181537_10884905	Not Available	605	Open in IMG/M
3300014201\|Ga0181537_10925695	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300014489\|Ga0182018_10483915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. PDC80	656	Open in IMG/M
3300014501\|Ga0182024_10309036	Not Available	2085	Open in IMG/M
3300014654\|Ga0181525_10308479	Not Available	864	Open in IMG/M
3300014654\|Ga0181525_10666908	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300014657\|Ga0181522_10608888	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300016750\|Ga0181505_10840098	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300017935\|Ga0187848_10468139	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300017937\|Ga0187809_10342020	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300017940\|Ga0187853_10033112	All Organisms → cellular organisms → Bacteria	2747	Open in IMG/M
3300017955\|Ga0187817_10077026	All Organisms → cellular organisms → Bacteria	2082	Open in IMG/M
3300017961\|Ga0187778_10894493	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300018007\|Ga0187805_10208550	Not Available	893	Open in IMG/M
3300018016\|Ga0187880_1197722	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	914	Open in IMG/M
3300018034\|Ga0187863_10651062	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300018038\|Ga0187855_10049240	All Organisms → cellular organisms → Bacteria	2623	Open in IMG/M
3300018046\|Ga0187851_10278840	All Organisms → cellular organisms → Bacteria → Acidobacteria	973	Open in IMG/M
3300018047\|Ga0187859_10129147	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300018085\|Ga0187772_10879977	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300018085\|Ga0187772_11474020	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300018086\|Ga0187769_10432685	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa ligni	991	Open in IMG/M
3300019240\|Ga0181510_1278695	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300019270\|Ga0181512_1310162	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300020579\|Ga0210407_10547681	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	903	Open in IMG/M
3300020580\|Ga0210403_11517837	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300020581\|Ga0210399_10031725	All Organisms → cellular organisms → Bacteria	4221	Open in IMG/M
3300020581\|Ga0210399_10510273	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300020581\|Ga0210399_10931084	Not Available	703	Open in IMG/M
3300020582\|Ga0210395_10034573	All Organisms → cellular organisms → Bacteria → Proteobacteria	3707	Open in IMG/M
3300020583\|Ga0210401_11153813	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300021168\|Ga0210406_10047604	All Organisms → cellular organisms → Bacteria	3769	Open in IMG/M
3300021168\|Ga0210406_10268075	All Organisms → cellular organisms → Bacteria → Acidobacteria	1397	Open in IMG/M
3300021171\|Ga0210405_10186944	Not Available	1642	Open in IMG/M
3300021178\|Ga0210408_10953608	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300021181\|Ga0210388_10094714	Not Available	2550	Open in IMG/M
3300021401\|Ga0210393_10795564	Not Available	770	Open in IMG/M
3300021402\|Ga0210385_10638701	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300021404\|Ga0210389_10979361	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300021405\|Ga0210387_10041191	All Organisms → cellular organisms → Bacteria	3685	Open in IMG/M
3300021405\|Ga0210387_10620548	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300021405\|Ga0210387_11366496	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300021406\|Ga0210386_10195593	All Organisms → cellular organisms → Bacteria	1710	Open in IMG/M
3300021406\|Ga0210386_10848351	Not Available	784	Open in IMG/M
3300021407\|Ga0210383_10027798	All Organisms → cellular organisms → Bacteria → Proteobacteria	4727	Open in IMG/M
3300021407\|Ga0210383_10105599	All Organisms → cellular organisms → Bacteria	2372	Open in IMG/M
3300021407\|Ga0210383_11186841	All Organisms → cellular organisms → Bacteria → Acidobacteria	642	Open in IMG/M
3300021420\|Ga0210394_10333024	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1333	Open in IMG/M
3300021420\|Ga0210394_10580934	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300021433\|Ga0210391_11550206	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300021477\|Ga0210398_10169423	Not Available	1779	Open in IMG/M
3300021559\|Ga0210409_10032757	All Organisms → cellular organisms → Bacteria → Proteobacteria	4984	Open in IMG/M
3300022873\|Ga0224550_1048965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300025434\|Ga0208690_1009575	All Organisms → cellular organisms → Bacteria	2028	Open in IMG/M
3300027629\|Ga0209422_1000921	All Organisms → cellular organisms → Bacteria → Acidobacteria	7117	Open in IMG/M
3300027629\|Ga0209422_1036106	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300027648\|Ga0209420_1030041	All Organisms → cellular organisms → Bacteria	1701	Open in IMG/M
3300027667\|Ga0209009_1072287	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300027727\|Ga0209328_10028603	Not Available	1714	Open in IMG/M
3300027768\|Ga0209772_10081502	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	982	Open in IMG/M
3300027842\|Ga0209580_10667816	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	514	Open in IMG/M
3300027867\|Ga0209167_10311017	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300027867\|Ga0209167_10415212	Not Available	734	Open in IMG/M
3300027879\|Ga0209169_10475001	Not Available	657	Open in IMG/M
3300027879\|Ga0209169_10516284	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300027889\|Ga0209380_10009144	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5823	Open in IMG/M
3300027895\|Ga0209624_10310090	Not Available	1051	Open in IMG/M
3300027908\|Ga0209006_10615467	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300028047\|Ga0209526_10270086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces avermitilis	1158	Open in IMG/M
3300028748\|Ga0302156_10181376	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300028798\|Ga0302222_10142186	Not Available	947	Open in IMG/M
3300029910\|Ga0311369_11115412	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300029999\|Ga0311339_11054898	All Organisms → cellular organisms → Bacteria → Proteobacteria	756	Open in IMG/M
3300030007\|Ga0311338_11380511	Not Available	657	Open in IMG/M
3300030053\|Ga0302177_10060327	All Organisms → cellular organisms → Bacteria → Proteobacteria	2273	Open in IMG/M
3300030053\|Ga0302177_10205537	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300030503\|Ga0311370_10988198	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300030503\|Ga0311370_12440605	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300030580\|Ga0311355_11776961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Sporomusaceae	524	Open in IMG/M
3300030707\|Ga0310038_10228850	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300031233\|Ga0302307_10380278	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	719	Open in IMG/M
3300031234\|Ga0302325_11613654	Not Available	826	Open in IMG/M
3300031234\|Ga0302325_12429412	Not Available	628	Open in IMG/M
3300031236\|Ga0302324_100430689	All Organisms → cellular organisms → Bacteria	1954	Open in IMG/M
3300031236\|Ga0302324_101379206	Not Available	924	Open in IMG/M
3300031247\|Ga0265340_10498078	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300031708\|Ga0310686_113645946	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300031708\|Ga0310686_117822328	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300031941\|Ga0310912_11504378	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300032805\|Ga0335078_10956781	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa ligni	1020	Open in IMG/M
3300032895\|Ga0335074_10072901	All Organisms → cellular organisms → Bacteria	4626	Open in IMG/M
3300032895\|Ga0335074_10110097	All Organisms → cellular organisms → Bacteria → Proteobacteria	3601	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.15%
Host-Associated	Host-Associated	0.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.94%
Aquatic	Environmental → Aquatic	28.21%
Plants	Host-Associated → Plants	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.27%
Freshwater	Environmental → Aquatic → Freshwater	28.21%
Peat	Environmental → Terrestrial → Peat	13.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	28.21%
Loam	Environmental → Terrestrial → Soil → Loam	16.24%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	13.68%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.55%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	21.37%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.24%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	13.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.84%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.27%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.56%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	11.97%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	11.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.40%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	8.55%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.84%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.27%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.42%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.42%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.56%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.71%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.85%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.85%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.85%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.85%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300019240	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019270	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022873	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14	Environmental	Open in IMG/M
3300025434	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_102191321	3300001593	Forest Soil	SGTHTAAQTWRLVLFIRHLPQIAPEELNEMKQWDQKSEANPAHF*
JGIcombinedJ26739_1018670601	3300002245	Forest Soil	QAWRLVLFIRHLPQITPEELNEMKALNRKMVANPANW*
Ga0070731_111179962	3300005538	Surface Soil	AWRLVLFIRHLPQITPEEIKEMNGWNRKPQANPKNF*
Ga0070762_100071751	3300005602	Soil	PQTWRLVLFIRHLPQITPEELNEMKGWDPKNEADPAHF*
Ga0070764_106432491	3300005712	Soil	QTWRLVLFIRHLPQITPEELDEMNGWDSKREADPTHF*
Ga0070764_106965961	3300005712	Soil	TWRLVLFIRHLPQITPEELNEMKGWDPKSEAVPAHF*
Ga0070765_1004027113	3300006176	Soil	WRLVLFIRHLPEITDEELNEMKGWNPKMQANPANF*
Ga0070765_1007925442	3300006176	Soil	HGTHTVPQTWRLVLFIRHLPQITPEELNEMKGWDPKSEADPAHF*
Ga0116125_11678361	3300009628	Peatland	TAAQTWRLVLFIRHLPQITPDELNDMKGWDPKNQADPAHF*
Ga0116102_11575641	3300009632	Peatland	TWRLVLFIRHLPQITAEELNEMKGLNPKRQANPANF*
Ga0116113_11216941	3300009638	Peatland	AQTWRLVLFIRHLAQITPEELNEMKALNPKRQANPANW*
Ga0116110_10801862	3300009643	Peatland	PWNWRLVLFIRHLPQITPEELNEMNGWDSKMEANPAHF*
Ga0116215_10908631	3300009672	Peatlands Soil	TWRLVLFIRYLPRITPEELNEMKGWNSKMEADPAHF*
Ga0116216_106200251	3300009698	Peatlands Soil	WRLVLFIRHLPQITPEELNEMDGWNSKMEANPAHF*
Ga0074046_100931963	3300010339	Bog Forest Soil	FHGTHTVPQTWRLVLFIRHLPQITPEELNEMKGWDPKNEADPAHF*
Ga0150983_149920171	3300011120	Forest Soil	PQTWRLVLFIRHLPQITPDELNDMKGWDPKNQADPAHF*
Ga0181532_103870461	3300014164	Bog	AFHGTHTVPQTWRLVLFIRHLPQITPDELNDMKGWDPKNQADPAHF*
Ga0181523_103935321	3300014165	Bog	RLVLFIRHLPQITPEELNEMNGWNSKMEADPAHF*
Ga0181528_102209221	3300014167	Bog	TWRLVLFIRHLPQITPEELNEMKGWDPKNEANPAHF*
Ga0181534_106661891	3300014168	Bog	TWRLVLFIRHLPQITSEELNEMKGWDPKNEANPAHF*
Ga0181531_103192391	3300014169	Bog	TVPQTWRLVLFIRHLPQITPEELNEMKGWDSKMEADPAHF*
Ga0181531_105131192	3300014169	Bog	GTHTVPQTWRLVLFIRHLPQITPEELNEMKGWDQKSEADPAHF*
Ga0181531_105955112	3300014169	Bog	HTVPQTWRLVLFIRHLPQITPEELNEMKGWDPKNEANPAHF*
Ga0181531_107718392	3300014169	Bog	VPQTWRLVLFIRHLPQITPEELNEMKGWDPKNEANPAHF*
Ga0181526_106081931	3300014200	Bog	TVPWNWRLVLSIRHLPQITPEELNEMNGWDSKMEANPAHF*
Ga0181537_108849052	3300014201	Bog	RLVLFIRHLPQITAEELNEMKALNPKRQANPANW*
Ga0181537_109256951	3300014201	Bog	TVPWNWRLVLFIRHLPQITPEELNEMNGWDSKMEANPAHF*
Ga0182018_104839152	3300014489	Palsa	WRLVLFIRHLPQITAEELNEMKGLNPKKEANPANF*
Ga0182024_103090361	3300014501	Permafrost	TWRLVLFIRHLPQITPEELNEMNGWDPKSAADPAHF*
Ga0181525_103084792	3300014654	Bog	AFSEAHTAPQAWRLVLFIRHLPQITPEELNEMKGWNRKMVANPANW*
Ga0181525_106669082	3300014654	Bog	EAHTAPQAWRLVLFIRHLPQITPEELNEMKGWNRKMMANPANW*
Ga0181522_106088881	3300014657	Bog	WRLVLFIRHLPQITPEELNEMNGWNSKMEADPAHF*
Ga0181505_108400981	3300016750	Peatland	HTVPQTWRLVLFIRHLPQITPEELNEMKGWDPKNEANPAHF
Ga0187848_104681392	3300017935	Peatland	AFHGTHTVPWNWRLVLFIRHLPQITPEELNEMNGWNSKMEADPAHF
Ga0187809_103420202	3300017937	Freshwater Sediment	WRLVLFIRHLPQITPEELNEMKGWDPKSEADPAHF
Ga0187853_100331121	3300017940	Peatland	PWNWRLVLFIRHLPQITPEELNEMNGWDSKMEANPAHF
Ga0187817_100770263	3300017955	Freshwater Sediment	HTVPQTWRLVLFIRHLPQITPEELNEMKGWDPKSEADPAHF
Ga0187778_108944932	3300017961	Tropical Peatland	AEKTWRLILFIRHLPQITPEELNEMKGLNRKPQANFADF
Ga0187805_102085501	3300018007	Freshwater Sediment	THTVPQTWRLVLFIRHLPQITPEELNDMKGWDPKNEANPAHF
Ga0187880_11977221	3300018016	Peatland	FHGTHTVPWNWRLVLFIRHLPQITPEELNEMNGWNSKMEADPAHF
Ga0187863_106510621	3300018034	Peatland	GTHTVPQTWRLVLFIRHLPQITPEELNEMMGWDPKNEANPAHF
Ga0187855_100492401	3300018038	Peatland	HTVPQTWRLVLFIRHLPQITPEELNEMKGWDSKMEADPSHF
Ga0187851_102788401	3300018046	Peatland	TVPQTWRLVLFIRHLPQITPEELNEMKGWNSKMEADPSHF
Ga0187859_101291471	3300018047	Peatland	HTVPQTWRLVLFIRHLPQITPEELNEMAGWDPKSYAVPAHF
Ga0187772_108799771	3300018085	Tropical Peatland	FSEVHTAEKTWRLILFIRHLPQITPEELNEMKGLNRKREANPANF
Ga0187772_114740202	3300018085	Tropical Peatland	EKTWRLILFIRHLPQITPEELNEMKGLNRKIQANPGDW
Ga0187769_104326851	3300018086	Tropical Peatland	AWRLVLFIRHLPQITPEELNEMKGLNRKPEANPANF
Ga0181510_12786951	3300019240	Peatland	TVPQTWRLVLFIRHLPQITPEELNEMKGWDPKNEANPAHF
Ga0181512_13101621	3300019270	Peatland	TWRLVLFIRHLPQITPEELNEMKTLNRKMQSNPANW
Ga0210407_105476811	3300020579	Soil	FSGTHSVAQTWHLVLFIRHLPQVTPAELNEMKGWDPKSAADPAHF
Ga0210403_115178372	3300020580	Soil	TWRLVLFIRHLPQITPEELNEMKGWDPKSEADPAHF
Ga0210399_100317253	3300020581	Soil	WRLVLFIRHLPQITPEELNEMKGWDPKSEANPAHF
Ga0210399_105102731	3300020581	Soil	AQTWRLVLFIRHLPQITAEELNEMKGWDPKSAADPAHF
Ga0210399_109310841	3300020581	Soil	TWRLVLFIRHLPQITPEELNEMKGWGQKSEADPAHF
Ga0210395_100345737	3300020582	Soil	MPAFSGTHTAAQTWRLVLFIRHLPQITAEELNEMKGWDQKSEADPAHF
Ga0210401_111538132	3300020583	Soil	AFHGTHTVPQTWRLVLFIRHLPQITPEELNEMKGWDQKSAADPAHF
Ga0210406_100476041	3300021168	Soil	FSGTHTAAQTWRLVLFIRHLPQITAEELNEMKGWDPKSAADPAHF
Ga0210406_102680751	3300021168	Soil	THTVPQTWRLVLFIRHLPQITAEELNEMERLDPKSEADQTHF
Ga0210405_101869441	3300021171	Soil	VPQTWRLVLFIRHLPQITPEELNEMKGWDPKSDADPAHF
Ga0210408_109536081	3300021178	Soil	TVPQTWRLVLFIRHLPQITAEELNEMKRLDPKSEADPAHF
Ga0210388_100947141	3300021181	Soil	TVPQTWRLVLFIRHLPQITPEELNEMKGWDPKSEADPAHF
Ga0210393_107955641	3300021401	Soil	TVPQTWRLVLFIRHLPQITPEELNEMKGWDQKSEADPAHF
Ga0210385_106387012	3300021402	Soil	WRLVLFSRHLPQITPEELNEMKGWDPKSEADPAHF
Ga0210389_109793611	3300021404	Soil	PAFSGTHTAAQTWRLVLFIRHLPQITAEELNEMKGWDQKSEADPAHF
Ga0210387_100411911	3300021405	Soil	TWRLVLFIRHLPQITAEELNEMKRLEPKSEADPAHF
Ga0210387_106205482	3300021405	Soil	THTVPLTWRLVLFIRHLPQITAEELNEMERLYPKSEANPAHF
Ga0210387_113664961	3300021405	Soil	TVPQTWRLVLFIRHLPQITPEELNEMKGWDPKSEADTAHF
Ga0210386_101955931	3300021406	Soil	SGTHTAAQTWRLVLFIRHLPQITAEELNEMKGWDPKSEADPAHF
Ga0210386_108483511	3300021406	Soil	HTVPQTWRLVLFIRHLPQITPEELNEMKGWDQKSAADSAHF
Ga0210383_100277985	3300021407	Soil	QTWRLVLFIRHLPQITPEELNEMKGWDPKSEAVPAHF
Ga0210383_101055991	3300021407	Soil	VPQTWRLVLFIRHLPQITPEELNEMKGWDQKSAADPAHF
Ga0210383_111868412	3300021407	Soil	MPAFHGTHTVPQTWRLVLFIRHLPQINPEELNEMNGWNSKMEADPAHF
Ga0210394_103330243	3300021420	Soil	GTHTVPQTWRLVLFIRHLPQITPEELNEMKGWDPKSEADPAHF
Ga0210394_105809342	3300021420	Soil	WRLVLFIRHLPRITAEELDEMKRLDPTSEADPAHF
Ga0210391_115502062	3300021433	Soil	MPAFHGTHTDPQTWRLVLFIRHLPQITPEELNEMNGWNSKMEADPAHF
Ga0210398_101694231	3300021477	Soil	FHGTHTVPQTWRLVLFIRHLPQITPEELNDMKGWDPKNEADPAHF
Ga0210409_100327576	3300021559	Soil	HTAAQTWRLVLFIRHLPQITAEELNEMKGWDPKSEADPAHF
Ga0224550_10489651	3300022873	Soil	PQTWRLVLFIRHLPQITPEELNEMKGWDPKNEADPAHF
Ga0208690_10095751	3300025434	Peatland	PQTWRLVLFIRHLPQITPDELNDMKGWDPKNQADPAHF
Ga0209422_100092112	3300027629	Forest Soil	SAAQAWRLVLFIRHLPQITAEELNEMKGLNPKRQANPANW
Ga0209422_10361062	3300027629	Forest Soil	SAAQAWRLVLFIRHLPQITAEELNEMKGLNPKPQANPANW
Ga0209420_10300413	3300027648	Forest Soil	FHGSHTVPQTWRLVLFIRHLPQITPEELNEMAGWDPKSYAVPAHF
Ga0209009_10722871	3300027667	Forest Soil	HTVPQTWRLVLFIRHLPQITPEELNEMKRWDPKNEADPAHF
Ga0209328_100286032	3300027727	Forest Soil	WRLVLFIRHLPQITPEELNEMKGWDPKSEAVPAHF
Ga0209772_100815023	3300027768	Bog Forest Soil	TWRLVLFIRHLPQITPEEVNEMKGWDPKSEADPAHF
Ga0209580_106678161	3300027842	Surface Soil	PAFSGTHTPALTWRLVLFIRHLPQITPEELNEMNGWDPKSAADPAHF
Ga0209167_103110173	3300027867	Surface Soil	WRLVLFIRHLPQITPEELNEMKGWNSKMEADPAHF
Ga0209167_104152122	3300027867	Surface Soil	THTVPQTWRLVLFIRHLPQITAEELNEMKRLDPTSEADPAHF
Ga0209169_104750011	3300027879	Soil	PQTWRLVLFIRHLPQITPEELDEMNGWDSKREADPTHF
Ga0209169_105162842	3300027879	Soil	TWRLVLFIRHLPQITPEELNEMKGWDPKSEAVPAHF
Ga0209380_100091445	3300027889	Soil	AFSGTHTAAQTWRLVLFIRHLPQITAEELNEMKRLDPKSEADPAHF
Ga0209624_103100901	3300027895	Forest Soil	TWRLVLFIRHLPQITPEELNEMKGWDPKNEANPAHF
Ga0209006_106154671	3300027908	Forest Soil	AFSGTHTPALTWRLVLFIRHLPQITPEELHEMEGWDPKSAADPAHF
Ga0209526_102700862	3300028047	Forest Soil	PQTWRLVLFIRHLPQITPEELNEMKGWDPKSEAVPAHF
Ga0302156_101813761	3300028748	Bog	MPAFHGTHTVPWNWRLVLFIRHLPQITPEELNEMNGWDSKMEANPAHF
Ga0302222_101421862	3300028798	Palsa	MPAFSGTHTVPQTWRLVLFIRHLPQITPEELNEMKGWDSKMEADPSHF
Ga0311369_111154122	3300029910	Palsa	TVPQTWRLVLFIRHLPQITPEDLNEMKGWDPKNEANPAHF
Ga0311339_110548981	3300029999	Palsa	WRLVLFIRHLPQITPEELNEMKGWDPKNEADPAHF
Ga0311338_113805112	3300030007	Palsa	TWRLVLFIRHLPQTTPEEFSEIKALNPKMVANPANW
Ga0302177_100603273	3300030053	Palsa	GTHTVPQTWRLVLFIRHLPQITPEELNEMKGWDPKNEADPVHF
Ga0302177_102055372	3300030053	Palsa	TAAQTWRLVLFIRHLPQITAEELNQMKGLNPKPEANPANF
Ga0311370_109881982	3300030503	Palsa	TAAQTWRLVLFIRHLPQITAAELNQMKGLNPKPEANPANF
Ga0311370_124406051	3300030503	Palsa	HTVPQTWRLVLFIRHLPQITPEELNEMKGWDQKNEADPAHF
Ga0311355_117769611	3300030580	Palsa	MPAFSEAHTPEKTWRLVLFIRHLPQITPGELNEMKGWNRKMQANPANW
Ga0310038_102288501	3300030707	Peatlands Soil	HTVPQTWRLVLFIRHLPQITPEEVNEMKGWDPKSEANPANF
Ga0302307_103802781	3300031233	Palsa	VPQTWRLVLFIRHLPQITPEELNEMKGWDPKNEADPAHF
Ga0302325_116136541	3300031234	Palsa	QTWRLVLFIRHLPQITPEELNEMKGWDSKMEADPSHF
Ga0302325_124294122	3300031234	Palsa	QTWRLVLFIRHLPQITPEELNEMKGWDPKNEANPAHF
Ga0302324_1004306891	3300031236	Palsa	AFHGTHTVPQTWRLVLFIRHLPQITPEELNEMKGWDPKNEANPAHF
Ga0302324_1013792062	3300031236	Palsa	THTVPQTWRLVLFIRHLPQIRPEELNEMKGWDPKNEADPAHF
Ga0265340_104980781	3300031247	Rhizosphere	SEAHTPEKAWRLVLFIRHLPQITPEELNEMKALNRKMVANPADW
Ga0310686_1136459462	3300031708	Soil	WRLVLFIRHLPQITPEELNEMKRWDPKNEADPAHF
Ga0310686_1178223281	3300031708	Soil	EHTPPLNWRLILFIRHLPQITPEELNEMKGWDPKSEADPAHF
Ga0310912_115043781	3300031941	Soil	FKEIHTPEKTWRLILFIRHLPQITPEELNEMKGLNRKPQADFADF
Ga0335078_109567812	3300032805	Soil	QTWRLVLFIRHLPQITPEEVNEMKGWDPKNEADPAHF
Ga0335074_100729015	3300032895	Soil	HTAPQAWRLVLFIRHLPQITPEELNEMKGWNRKMMANPANW
Ga0335074_101100976	3300032895	Soil	MLAFHGTHTVPQTWRLVLFIRHLPQITAEELKEMDGWNRKPQANPKDF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077537

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences