Metagenome / Metatranscriptome Family F077533

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077533
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	44 residues
Representative Sequence	DADEAAYKVTGEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA
Number of Associated Samples	83
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.56 %
% of genes near scaffold ends (potentially truncated)	95.73 %
% of genes from short scaffolds (< 2000 bps)	93.16 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.761 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.752 % of family members)
Environment Ontology (ENVO)	Unclassified (55.556 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.957 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 29.58% Coil/Unstructured: 70.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF04392	ABC_sub_bind	4.27
PF00162	PGK	1.71
PF02806	Alpha-amylase_C	1.71
PF00589	Phage_integrase	1.71
PF00753	Lactamase_B	0.85
PF06689	zf-C4_ClpX	0.85
PF16655	PhoD_N	0.85
PF05990	DUF900	0.85
PF00239	Resolvase	0.85
PF01594	AI-2E_transport	0.85
PF08448	PAS_4	0.85
PF00128	Alpha-amylase	0.85
PF02668	TauD	0.85
PF11295	DUF3096	0.85
PF07758	DUF1614	0.85
PF00118	Cpn60_TCP1	0.85
PF01593	Amino_oxidase	0.85
PF01546	Peptidase_M20	0.85
PF02922	CBM_48	0.85
PF13439	Glyco_transf_4	0.85
PF03401	TctC	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.27
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	2.56
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	2.56
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	2.56
COG0126	3-phosphoglycerate kinase	Carbohydrate transport and metabolism [G]	1.71
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.85
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.85
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.85
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.85
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.85
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.85
COG4089	Uncharacterized membrane protein	Function unknown [S]	0.85
COG4782	Esterase/lipase superfamily enzyme	General function prediction only [R]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.76 %
Unclassified	root	N/A	16.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.76 %
Unclassified	root	N/A	16.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.76 %
Unclassified	root	N/A	16.24 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	79.49 %
Unclassified	root	N/A	16.24 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	76.07 %
Unclassified	root	N/A	16.24 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	58.97 %
Unclassified	root	N/A	16.24 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.42 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	58.97 %
Unclassified	root	N/A	16.24 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.42 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	58.97 %
Unclassified	root	N/A	16.24 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.42 %
Nitrosococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10011974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2394	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1022914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	876	Open in IMG/M
3300003505\|JGIcombinedJ51221_10191484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	830	Open in IMG/M
3300004479\|Ga0062595_102347431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300005332\|Ga0066388_101604952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1145	Open in IMG/M
3300005332\|Ga0066388_104492702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	710	Open in IMG/M
3300005363\|Ga0008090_14501303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300005560\|Ga0066670_10168596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1294	Open in IMG/M
3300005713\|Ga0066905_101184293	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300005764\|Ga0066903_100796307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1689	Open in IMG/M
3300005764\|Ga0066903_101564300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1248	Open in IMG/M
3300005764\|Ga0066903_105066102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300005764\|Ga0066903_105120111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	694	Open in IMG/M
3300005764\|Ga0066903_105476258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	669	Open in IMG/M
3300005764\|Ga0066903_106673613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300005764\|Ga0066903_106900407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	589	Open in IMG/M
3300006032\|Ga0066696_10324173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1003	Open in IMG/M
3300006176\|Ga0070765_100481057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1165	Open in IMG/M
3300006797\|Ga0066659_11304758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300010046\|Ga0126384_11178932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	706	Open in IMG/M
3300010047\|Ga0126382_11029406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	724	Open in IMG/M
3300010048\|Ga0126373_12732280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	551	Open in IMG/M
3300010366\|Ga0126379_10131054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus	2298	Open in IMG/M
3300010366\|Ga0126379_10557655	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300010366\|Ga0126379_10590070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1195	Open in IMG/M
3300010366\|Ga0126379_11554747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	767	Open in IMG/M
3300010366\|Ga0126379_11602305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	756	Open in IMG/M
3300010376\|Ga0126381_102102937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	813	Open in IMG/M
3300010376\|Ga0126381_102519916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	737	Open in IMG/M
3300010398\|Ga0126383_10978676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	934	Open in IMG/M
3300010863\|Ga0124850_1036489	All Organisms → cellular organisms → Bacteria	1567	Open in IMG/M
3300012957\|Ga0164303_10222044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1062	Open in IMG/M
3300012961\|Ga0164302_11873484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300012971\|Ga0126369_11998435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	668	Open in IMG/M
3300012971\|Ga0126369_12408818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	612	Open in IMG/M
3300012971\|Ga0126369_12425997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	610	Open in IMG/M
3300012971\|Ga0126369_13486823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300012989\|Ga0164305_10650822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	854	Open in IMG/M
3300012989\|Ga0164305_12132658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300016294\|Ga0182041_10105599	All Organisms → cellular organisms → Bacteria	2080	Open in IMG/M
3300016319\|Ga0182033_10075551	All Organisms → cellular organisms → Bacteria	2391	Open in IMG/M
3300016319\|Ga0182033_10257833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1420	Open in IMG/M
3300016319\|Ga0182033_10857939	Not Available	802	Open in IMG/M
3300016357\|Ga0182032_11418702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	601	Open in IMG/M
3300016387\|Ga0182040_11853454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300016404\|Ga0182037_10745789	Not Available	841	Open in IMG/M
3300016404\|Ga0182037_11499450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300016422\|Ga0182039_10054180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2748	Open in IMG/M
3300016422\|Ga0182039_10968905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	762	Open in IMG/M
3300016445\|Ga0182038_11018232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	734	Open in IMG/M
3300018431\|Ga0066655_10485481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	817	Open in IMG/M
3300018482\|Ga0066669_10587436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	975	Open in IMG/M
3300020579\|Ga0210407_10581499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	873	Open in IMG/M
3300021168\|Ga0210406_10608001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	852	Open in IMG/M
3300021171\|Ga0210405_11398097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300021432\|Ga0210384_10308621	All Organisms → cellular organisms → Bacteria → Proteobacteria	1424	Open in IMG/M
3300021475\|Ga0210392_10663419	All Organisms → cellular organisms → Bacteria → Proteobacteria	775	Open in IMG/M
3300021478\|Ga0210402_11613728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	575	Open in IMG/M
3300021560\|Ga0126371_11995965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	698	Open in IMG/M
3300025915\|Ga0207693_10271396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1329	Open in IMG/M
3300025928\|Ga0207700_11465513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300027846\|Ga0209180_10634663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	587	Open in IMG/M
3300031474\|Ga0170818_100994247	All Organisms → cellular organisms → Bacteria → Proteobacteria	919	Open in IMG/M
3300031546\|Ga0318538_10753552	Not Available	528	Open in IMG/M
3300031561\|Ga0318528_10387446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	750	Open in IMG/M
3300031572\|Ga0318515_10380919	Not Available	756	Open in IMG/M
3300031573\|Ga0310915_11046150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300031573\|Ga0310915_11121360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	546	Open in IMG/M
3300031679\|Ga0318561_10539165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	642	Open in IMG/M
3300031681\|Ga0318572_10508300	Not Available	718	Open in IMG/M
3300031719\|Ga0306917_10291688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1258	Open in IMG/M
3300031719\|Ga0306917_10662590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	820	Open in IMG/M
3300031736\|Ga0318501_10076310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1630	Open in IMG/M
3300031747\|Ga0318502_10582622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	673	Open in IMG/M
3300031748\|Ga0318492_10080416	Not Available	1575	Open in IMG/M
3300031751\|Ga0318494_10506930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	703	Open in IMG/M
3300031768\|Ga0318509_10475553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	699	Open in IMG/M
3300031780\|Ga0318508_1020148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1613	Open in IMG/M
3300031782\|Ga0318552_10460628	Not Available	649	Open in IMG/M
3300031796\|Ga0318576_10392473	Not Available	656	Open in IMG/M
3300031805\|Ga0318497_10362676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	809	Open in IMG/M
3300031835\|Ga0318517_10117953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1173	Open in IMG/M
3300031835\|Ga0318517_10274014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	762	Open in IMG/M
3300031879\|Ga0306919_10671096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	799	Open in IMG/M
3300031879\|Ga0306919_10802477	Not Available	723	Open in IMG/M
3300031880\|Ga0318544_10196308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	779	Open in IMG/M
3300031890\|Ga0306925_11404235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	688	Open in IMG/M
3300031894\|Ga0318522_10068892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1277	Open in IMG/M
3300031897\|Ga0318520_10136251	Not Available	1412	Open in IMG/M
3300031897\|Ga0318520_10997531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529	Open in IMG/M
3300031912\|Ga0306921_11157683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	863	Open in IMG/M
3300031912\|Ga0306921_11574014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	715	Open in IMG/M
3300031941\|Ga0310912_10574048	Not Available	878	Open in IMG/M
3300031942\|Ga0310916_10065232	Not Available	2830	Open in IMG/M
3300031942\|Ga0310916_10803483	Not Available	792	Open in IMG/M
3300031942\|Ga0310916_11166474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M
3300031945\|Ga0310913_10980158	Not Available	593	Open in IMG/M
3300031946\|Ga0310910_10556217	Not Available	910	Open in IMG/M
3300031954\|Ga0306926_10655310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1277	Open in IMG/M
3300031954\|Ga0306926_10686635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1243	Open in IMG/M
3300031959\|Ga0318530_10348515	Not Available	613	Open in IMG/M
3300031981\|Ga0318531_10138944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1085	Open in IMG/M
3300032001\|Ga0306922_11046278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	840	Open in IMG/M
3300032001\|Ga0306922_11273570	Not Available	745	Open in IMG/M
3300032010\|Ga0318569_10419229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	624	Open in IMG/M
3300032035\|Ga0310911_10700769	Not Available	586	Open in IMG/M
3300032039\|Ga0318559_10624900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300032041\|Ga0318549_10399383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	619	Open in IMG/M
3300032059\|Ga0318533_10596446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	810	Open in IMG/M
3300032068\|Ga0318553_10521294	Not Available	623	Open in IMG/M
3300032076\|Ga0306924_12470298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300032089\|Ga0318525_10135354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1263	Open in IMG/M
3300032261\|Ga0306920_100029258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7830	Open in IMG/M
3300032261\|Ga0306920_100232045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2753	Open in IMG/M
3300032261\|Ga0306920_100473151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1861	Open in IMG/M
3300032261\|Ga0306920_101019460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1204	Open in IMG/M
3300032261\|Ga0306920_104422787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	503	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	87.18%
Loam	Environmental → Terrestrial → Soil → Loam	12.82%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	63.25%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.11%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.56%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.85%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100119741	3300000597	Forest Soil	YKVTGEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA*
AP72_2010_repI_A100DRAFT_10229141	3300000837	Forest Soil	CDEEHARFVAAGDADEAAYKVAGEHLHSEGDRRRLRLRVRRLGNGSPPPKLFYAF*
JGIcombinedJ51221_101914841	3300003505	Forest Soil	ADEAAYKVTGIQLRSEGERRKIRLRVRRLGNGSPPPTLFYAE*
Ga0062595_1023474311	3300004479	Soil	EEEHARFVAAGDAEEAAYKVAGEQLHSEGDRRKLRLRVRRLGNGSPPPKLFYAS*
Ga0066388_1016049524	3300005332	Tropical Forest Soil	DEAAYKVTGEHLHSEGERRKVRVRVRRLGNGSPPPKVFYAA*
Ga0066388_1044927022	3300005332	Tropical Forest Soil	VNEFTSHCDEAAYKVTEEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA*
Ga0008090_145013032	3300005363	Tropical Rainforest Soil	EQQDARFVAAEDADEAAYKVTKEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA*
Ga0066670_101685961	3300005560	Soil	DEAAYKVTGEHLRSEGERRRVRLRVRRLGNGSAPPKLFYAA*
Ga0066905_1011842932	3300005713	Tropical Forest Soil	RQQSRVVAARDEEEAAYKVAGERLTRDGDRRKARLRVLRLGTGSPPPTVFYAA*
Ga0066903_1007963074	3300005764	Tropical Forest Soil	TGEHLHSEGERSKVRLRVRRLGNGSPPPKLFYAA*
Ga0066903_1015643001	3300005764	Tropical Forest Soil	AGEHLHIEGERRKVRLRVRRLGNGSPPPKLFYAA*
Ga0066903_1050661021	3300005764	Tropical Forest Soil	VTGEHLHSEGERSKVRLRVRRLGNGSPPPKLFYAA*
Ga0066903_1051201113	3300005764	Tropical Forest Soil	TGEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA*
Ga0066903_1054762583	3300005764	Tropical Forest Soil	YKVTGEHLQSEGERRKVRLRVRRLGNGSPSPKLFYAA*
Ga0066903_1066736132	3300005764	Tropical Forest Soil	AAGNADEAAYKVTGEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA*
Ga0066903_1069004071	3300005764	Tropical Forest Soil	VAARDADEAAYRVTGEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA*
Ga0066696_103241732	3300006032	Soil	LAQRSSRTYARFVAAGDADEAAYKVAGEYLQSEGDRRKLRLRARRLGNGSPAPKLFYAS*
Ga0070765_1004810571	3300006176	Soil	VTGIQLRSEGERRKIRLRVRRLGNGSPPPTLFYAE*
Ga0066659_113047582	3300006797	Soil	DADEAAYKVTGEHLRSEGERRKVRLRVRRLGNGGPPPKLFYAA*
Ga0126384_111789321	3300010046	Tropical Forest Soil	VAAGDADEAAYKVTGEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA*
Ga0126382_110294061	3300010047	Tropical Forest Soil	NADEAAYKVAGGHLQSEGERRKVRLRVRRLGNGSPSPKLFYAA*
Ga0126373_127322801	3300010048	Tropical Forest Soil	TREHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA*
Ga0126379_101310544	3300010366	Tropical Forest Soil	VAARDADEAAYRVTGEHLHSEGERRKVRLRVRKLGNGSPPPKLFYAA*
Ga0126379_105576552	3300010366	Tropical Forest Soil	QEARVVAARDADEAAYRVIGKHLRSEGERRKMRLRVHRLGNGSPPPKLFYAA*
Ga0126379_105900701	3300010366	Tropical Forest Soil	VAATDADEAAYKVTREHLHSEGERRKVRLRVRRLGNGSPPPRLFYAA*
Ga0126379_115547471	3300010366	Tropical Forest Soil	YKVTGGHLHSEGERRKVWLRVRRLGNGTPPPKLFYAA*
Ga0126379_116023051	3300010366	Tropical Forest Soil	AYKVTGEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA*
Ga0126381_1021029371	3300010376	Tropical Forest Soil	ADEAAYTVTGKHLRSEGERRKVRLRVRRLGIGSEPPKLFYAG*
Ga0126381_1025199161	3300010376	Tropical Forest Soil	RFVAARDADEAAYKVTGEHLRSEGERRKVRLRVRRLGNGSPPPRLFYAA*
Ga0126383_109786763	3300010398	Tropical Forest Soil	IAARDADEAAYKVTGEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA*
Ga0124850_10364891	3300010863	Tropical Forest Soil	QGSNLHSEGERRKVRLRVRRLGNGSPPPKLFYAA*
Ga0164303_102220441	3300012957	Soil	IVAARDANEAAYNVTGEHLRSQGERRKVRLRVRRLGNGSPPPKLFYTG*
Ga0164302_118734841	3300012961	Soil	ANEAAYNVTGEHLRSQGERRKVRLRVRRLGNGSPPPKLFYTG*
Ga0126369_119984351	3300012971	Tropical Forest Soil	VRFVAAGDADEAAYKVTGEHLHSEGERSKVRLRVRRLGNGSPPPKLFYAA*
Ga0126369_124088181	3300012971	Tropical Forest Soil	EAAYKVTGEHLHSEGERGKVRLRVRRLGNGSPPPKLFYAA*
Ga0126369_124259971	3300012971	Tropical Forest Soil	DVRFVAARDADEAAYKVTGEHLHSEGERGKVRLRVRRLGNGSPPPKLFYAA*
Ga0126369_134868232	3300012971	Tropical Forest Soil	AGDADEAAYRVTGEHLHSEGEHRKVRLRVRRLGNGSPPPKLFYAV*
Ga0164305_106508221	3300012989	Soil	VAARDANEAAYNVTGEHLRSQGERRKVRLRVRRLGNGSPPPKLFYAG*
Ga0164305_121326581	3300012989	Soil	VAARDANEAAYNVTGEHLRSQGERRKVRLRVRRLGNGSPPPKLFYTG*
Ga0182041_101055991	3300016294	Soil	QQHARFVAARDADEAAYKVTGEHLRSEGERRKLRLRVKRLGNGSPPPKLFYAA
Ga0182033_100755511	3300016319	Soil	DEAAYKVTGEHLRSEGERRKVRLRVRRLGTGSPPPKLFYAA
Ga0182033_102578331	3300016319	Soil	RFVAARDADEAAYKVTGEHLHSDGERKKVRLRIRRLGNGSPPPKLFYAC
Ga0182033_108579391	3300016319	Soil	DARFVAAGDADEAAYKVTGEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0182032_114187021	3300016357	Soil	EAAYRVAGQHLYSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0182040_118534541	3300016387	Soil	RNAEEAAYTVTGIHLRSEGERRKIRLRVRRLGNGSPPPMLFYAG
Ga0182037_107457892	3300016404	Soil	AYRVIGKHLRSQGERRKMRLRVHRLGNGSPPPKLFYAG
Ga0182037_114994501	3300016404	Soil	YNITGKHLRSEGEPRKVQLRVRRLGNGSPPPKLFYAA
Ga0182039_100541809	3300016422	Soil	EMPTKPHTKVTGEHLHSDGERKKVRLRIRRLGNGSPPPKLFYAC
Ga0182039_109689051	3300016422	Soil	MGVVAARDADEAAYRVTGEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0182038_110182322	3300016445	Soil	VAARDADEAAYKVTGEHLHSDGERKKVRLRIRRLGNGSPPPKLFYAC
Ga0066655_104854811	3300018431	Grasslands Soil	WEQQDARFVAAGDAGEAAYKVARAHLHSEGDRRRIRLRVRRLGNGSPPPKLFYAS
Ga0066669_105874361	3300018482	Grasslands Soil	RDEDDAAYKVTGEYLRKEGERKKVRLRVARLGNGSPPPTLFYAS
Ga0210407_105814992	3300020579	Soil	ARFVAARNADEAAYKVTGIQLRSEGERRKIRLRVRRLGNGSPPPTLFYAE
Ga0210406_106080012	3300021168	Soil	KVTGIQLRSEGERRKIRLRVRRLGNGSPPPTLFYAE
Ga0210405_113980971	3300021171	Soil	RQQDARFVAARNANEAAYNVTGEHLRSQGERRKVRLRVRRLGNGSPPPKLFYTG
Ga0210384_103086212	3300021432	Soil	RNADEAAYKATGIQLRSEGERRKIRLRVRRLGNGSPPPTLFYAE
Ga0210392_106634191	3300021475	Soil	AARDADEAAYKVTGEQLRSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0210402_116137281	3300021478	Soil	AARNADEAAYKATGIQLRSEGERRKIRLRVRRLGNGSPPPTLFYAE
Ga0126371_119959651	3300021560	Tropical Forest Soil	DADEAAYKVTGEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0207693_102713961	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	AAYNVTGEHLRSQGERRKVRLRVRRLGNGSPPPKLFYAG
Ga0207700_114655131	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	RDANEAAYNVTGEHLRSQGERRKVRLRVRRLGNGSPPPKLFYAG
Ga0209180_106346631	3300027846	Vadose Zone Soil	DEDEAAYKVTGERLRKEGERRKIRLRVVRLGNGSPPPTLFYAA
Ga0170818_1009942471	3300031474	Forest Soil	AYKVTGEQLRSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0318538_107535522	3300031546	Soil	KVTGEHLHSEGGRRKVRLRVRRLGNGSPPPKLFYAA
Ga0318528_103874462	3300031561	Soil	RDADEAAYKVTGEHLHSEGERGKVRLRVRRLGNGSPPPKLFYAA
Ga0318515_103809191	3300031572	Soil	YKVTGEHLHSEGEQRKVRLRVRRLGNGSPPPKLFYAA
Ga0310915_110461501	3300031573	Soil	EAAYRVAGQHLYSEGERRKVRLRVRRLGNGIPPPKLFYAV
Ga0310915_111213601	3300031573	Soil	FVAARDADEAAYKVTGEHLRSEGERKKLRLRVKRLGNGSPPPKLFYAA
Ga0318561_105391651	3300031679	Soil	ADEAAYKVTGEQLHSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0318572_105083001	3300031681	Soil	DEDEAAYKVTGEHLSKQGERRKVRVRVVRLGNGSPPPTLYYAT
Ga0306917_102916881	3300031719	Soil	EQQHARFVAARDADEAAYKVTGEHLRSEGERRKVRLRVKRLGNGSPPPKLFYAA
Ga0306917_106625901	3300031719	Soil	YKVTGEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0318501_100763104	3300031736	Soil	KVTGEHLHSDGERKKVRLRIRRLGNGSPPPKLFYAC
Ga0318502_105826221	3300031747	Soil	VAARDADEAAYRVTGKHLRSEGERRKMRLRVHRLGNGSPPPKLFYAG
Ga0318492_100804161	3300031748	Soil	DEAAYKVTGEHLHSEGEQRKVRLRVRRLGNGSPPPKLFYAA
Ga0318494_105069301	3300031751	Soil	QDARFVAARDADEAAYKVTGEHLHSEGEQRKVRLRVRRLGNGSPSPKLFYAA
Ga0318509_104755531	3300031768	Soil	FVAARDADEAAYKVTGEHLHSEGEQRKVRLRVRRLGNGSPSPKLFYAA
Ga0318508_10201481	3300031780	Soil	HEAAYKVTGEHLHSEGEQRKVRLRVRRLGNGSPPPKLFYAA
Ga0318552_104606281	3300031782	Soil	YKVTGEQLHSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0318576_103924731	3300031796	Soil	ADEAAYKVTGEHLHSEGGRRKVRLRVRRLGNGSPPPKLFYAA
Ga0318497_103626762	3300031805	Soil	ARFVAARDADEAAYKVTGEHLHSEGERRQVRLRVRRLGNGSPPPKLFYAA
Ga0318517_101179533	3300031835	Soil	EAAYKVTGEHLHSEGERRQVRLRVRRLGNGSPAPKLFYAA
Ga0318517_102740143	3300031835	Soil	VTGEQLHSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0306919_106710962	3300031879	Soil	FVAARDADEAAYKVTGEHLRSEGERRKLRLRVKRLGNGSPPPKLFYAA
Ga0306919_108024773	3300031879	Soil	AARDADEVAYKVTREHLHSEGEPRKVRLRVRRLGNGSPPPKLFYAA
Ga0318544_101963083	3300031880	Soil	YKVTGERLHSEGERGKVRLRVRRLGNGSPPPKLFYAA
Ga0306925_114042353	3300031890	Soil	ELQRARFVAARDADEAAYKVTGEHLRSEGERKKLRLRVKRLGNGSPPPKLFYAA
Ga0318522_100688921	3300031894	Soil	VAARDADEAAYKVTGEQLHSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0318520_101362511	3300031897	Soil	AYKVTGEHLRSEGEFRKVRLRVRRLGNGSPPAKLFYTA
Ga0318520_109975312	3300031897	Soil	DEAAYKVTGEYLHSDGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0306921_111576832	3300031912	Soil	VNEFTSHCDEAAYKVTEEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0306921_115740141	3300031912	Soil	ADEAAYKVAGEHLHIEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0310912_105740482	3300031941	Soil	DEAAYRVIGKHLRSQGERRKMRLRVHRLGNGSPPPKLFYAG
Ga0310916_100652324	3300031942	Soil	HARFVAARDADEAAYKVTGEHLRSEGERRKLRLRVKRLGNGSPPPKLFYAA
Ga0310916_108034831	3300031942	Soil	DEAAYKVTGEHLSKQGERRKVRVRVVRLGNGSPPPTLYYAT
Ga0310916_111664741	3300031942	Soil	EQQHARFVAARDADEAAYKVTGEHLRSEGERRKLRLRVKRLGNGGPPPKLFYAA
Ga0310913_109801581	3300031945	Soil	FSAARDADEAAYKVTGEHLRSEGERKKLRLRVKRLGNGSPPPKLFYAA
Ga0310910_105562171	3300031946	Soil	DADEAAYKVTGEHLHSEGERRKIRLRIRRLGNGSPPPKLFYAC
Ga0306926_106553102	3300031954	Soil	LPPWPLGAADARFVAASDAAEAAYKVTGEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0306926_106866351	3300031954	Soil	KVTGEHLHREGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0318530_103485151	3300031959	Soil	FVAARDADEAAYKVTGEHLHSEGGRRKVRLRVRRLGNGSPPPKLFYAA
Ga0318531_101389441	3300031981	Soil	YKVTGEYLHSDGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0306922_110462783	3300032001	Soil	YARFVAAKDADEAAYKVTGEHLRSEGNRRNVRLRVRRLGNGSPPPKLFYAA
Ga0306922_112735701	3300032001	Soil	NEAAYRVIGKHLRSQGERRKMRLRVHRLGNGSPLPKLFYAG
Ga0318569_104192291	3300032010	Soil	ARDADEAAYKVTGEQLHSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0310911_107007691	3300032035	Soil	EQQDARFVAAGDADEAAYKVTGEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0318559_106249001	3300032039	Soil	YKVTEEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0318549_103993831	3300032041	Soil	VTGEHLHSEGEQRKVRLRVRRLGNGSPSPKLFYAA
Ga0318533_105964462	3300032059	Soil	QDARFVAARDADEAAYKVTGEHLHGEGERRQVRLRVRRLGNGSPPPKLFYAA
Ga0318553_105212941	3300032068	Soil	ARDADEVAYKVTREHLHSEGEPRKVRLRVRRLGNGSPPPKLFYAA
Ga0306924_124702981	3300032076	Soil	YKVTGEHLQSEGERRKVRLRVRRLGNGSPSPKLFYAA
Ga0318525_101353541	3300032089	Soil	YKVTGEHLHSEGERRQVRLRVRRLGNGSPPPKLFYAA
Ga0306920_10002925816	3300032261	Soil	DARFVAARDADEAAYKVTGEHLHSDGERKKVRLRIRRLGNGSPPPKLFYAC
Ga0306920_1002320451	3300032261	Soil	WEQQDVRFVAARDADEAAYKVTGEHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA
Ga0306920_1004731511	3300032261	Soil	WRVVAARDEDEAAYKVTGEHLSKQGERRKVRVRVVRLGNGSPPPTLYYAT
Ga0306920_1010194603	3300032261	Soil	QHARFVAARDADEAAYKVTGEHLRSEGERRKVRLRVKRLGNGSPPPKLFYAA
Ga0306920_1044227872	3300032261	Soil	FVAAVNADEAAYKVTGEHLQSEGERRKVRLRVRRLGNGSPSPKLFYAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077533

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences