Metagenome / Metatranscriptome Family F077528

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077528
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	36 residues
Representative Sequence	MDEKSSWMRVLITIAIDWRFVTALVILVLALLLR
Number of Associated Samples	68
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.79 %
% of genes near scaffold ends (potentially truncated)	29.06 %
% of genes from short scaffolds (< 2000 bps)	70.09 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.812 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog (22.222 % of family members)
Environment Ontology (ENVO)	Unclassified (36.752 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.607 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.39% β-sheet: 0.00% Coil/Unstructured: 51.61%
Feature Viewer

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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF05726	Pirin_C	12.17
PF02954	HTH_8	7.83
PF02739	5_3_exonuc_N	2.61
PF14294	DUF4372	1.74
PF13280	WYL	1.74
PF08275	Toprim_N	1.74
PF00749	tRNA-synt_1c	1.74
PF01807	zf-CHC2	1.74
PF00476	DNA_pol_A	1.74
PF08206	OB_RNB	0.87
PF01208	URO-D	0.87
PF13271	DUF4062	0.87
PF13304	AAA_21	0.87
PF04015	DUF362	0.87
PF12773	DZR	0.87
PF02906	Fe_hyd_lg_C	0.87
PF01850	PIN	0.87
PF00015	MCPsignal	0.87
PF00133	tRNA-synt_1	0.87
PF14415	DUF4424	0.87
PF06723	MreB_Mbl	0.87
PF12760	Zn_Tnp_IS1595	0.87
PF00069	Pkinase	0.87
PF07690	MFS_1	0.87
PF03699	UPF0182	0.87
PF01433	Peptidase_M1	0.87
PF02576	RimP_N	0.87
PF00474	SSF	0.87
PF13492	GAF_3	0.87
PF04379	DUF525	0.87
PF00072	Response_reg	0.87
PF07729	FCD	0.87
PF05193	Peptidase_M16_C	0.87
PF04471	Mrr_cat	0.87
PF00687	Ribosomal_L1	0.87
PF01979	Amidohydro_1	0.87
PF08281	Sigma70_r4_2	0.87
PF04055	Radical_SAM	0.87
PF07228	SpoIIE	0.87
PF00012	HSP70	0.87
PF00365	PFK	0.87
PF00155	Aminotran_1_2	0.87
PF15919	HicB_lk_antitox	0.87
PF05685	Uma2	0.87
PF05170	AsmA	0.87
PF00145	DNA_methylase	0.87
PF13701	DDE_Tnp_1_4	0.87
PF03544	TonB_C	0.87
PF13735	tRNA_NucTran2_2	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	12.17
COG0358	DNA primase (bacterial type)	Replication, recombination and repair [L]	3.48
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.48
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	2.61
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	1.74
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.74
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	1.74
COG2006	Uncharacterized conserved protein, DUF362 family	Function unknown [S]	0.87
COG1158	Transcription termination factor Rho	Transcription [K]	0.87
COG1278	Cold shock protein, CspA family	Transcription [K]	0.87
COG1615	Uncharacterized membrane protein, UPF0182 family	Function unknown [S]	0.87
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.87
COG0779	Ribosome maturation factor RimP	Translation, ribosomal structure and biogenesis [J]	0.87
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.87
COG2967	Uncharacterized conserved protein ApaG affecting Mg2+/Co2+ transport	Inorganic ion transport and metabolism [P]	0.87
COG2982	Uncharacterized conserved protein AsmA involved in outer membrane biogenesis	Cell wall/membrane/envelope biogenesis [M]	0.87
COG4624	Iron only hydrogenase large subunit, C-terminal domain	Energy production and conversion [C]	0.87
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.87
COG4776	Exoribonuclease II	Transcription [K]	0.87
COG1077	Cell shape-determining ATPase MreB, actin-like superfamily	Cell cycle control, cell division, chromosome partitioning [D]	0.87
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.87
COG0557	Exoribonuclease R	Transcription [K]	0.87
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.87
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.87
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	0.87
COG0407	Uroporphyrinogen-III decarboxylase HemE	Coenzyme transport and metabolism [H]	0.87
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	0.87
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.87
COG0205	6-phosphofructokinase	Carbohydrate transport and metabolism [G]	0.87
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.87
COG0081	Ribosomal protein L1	Translation, ribosomal structure and biogenesis [J]	0.87
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.81 %
Unclassified	root	N/A	34.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.81 %
Unclassified	root	N/A	34.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.81 %
Unclassified	root	N/A	34.19 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	48.72 %
Unclassified	root	N/A	34.19 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	35.90 %
Unclassified	root	N/A	34.19 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.13 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.19 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	33.33 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	3.42 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.71 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	1.71 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.85 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.19 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	32.48 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	3.42 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.71 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.85 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.19 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	5.98 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	3.42 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	3.42 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	1.71 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.71 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.85 %
Paracidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Paracidobacterium	0.85 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.85 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.85 %
Sporolactobacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Sporolactobacillaceae	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.19 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	5.13 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	3.42 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	1.71 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1.71 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.71 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.85 %
Edaphobacter bradus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter bradus	0.85 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.85 %
Paracidobacterium acidisoli	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Paracidobacterium → Paracidobacterium acidisoli	0.85 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	0.85 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.85 %
Scopulibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Sporolactobacillaceae → Scopulibacillus	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.19 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	5.13 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	3.42 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1.71 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1.71 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.71 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.85 %
Scopulibacillus darangshiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Sporolactobacillaceae → Scopulibacillus → Scopulibacillus darangshiensis	0.85 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.85 %
Edaphobacter bradus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter bradus	0.85 %
Paracidobacterium acidisoli	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Paracidobacterium → Paracidobacterium acidisoli	0.85 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	0.85 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005529\|Ga0070741_10654986	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	931	Open in IMG/M
3300005529\|Ga0070741_11207379	Not Available	637	Open in IMG/M
3300005534\|Ga0070735_10053024	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	2675	Open in IMG/M
3300005541\|Ga0070733_10184206	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1363	Open in IMG/M
3300005591\|Ga0070761_10015088	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	4301	Open in IMG/M
3300005591\|Ga0070761_10033567	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2869	Open in IMG/M
3300005591\|Ga0070761_10042673	Not Available	2547	Open in IMG/M
3300005591\|Ga0070761_10134787	Not Available	1440	Open in IMG/M
3300005602\|Ga0070762_11321164	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Paracidobacterium → Paracidobacterium acidisoli	501	Open in IMG/M
3300005712\|Ga0070764_10408314	All Organisms → cellular organisms → Bacteria → Acidobacteria	803	Open in IMG/M
3300006028\|Ga0070717_10649812	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300006028\|Ga0070717_10810764	All Organisms → cellular organisms → Bacteria → Acidobacteria	852	Open in IMG/M
3300006028\|Ga0070717_12104048	Not Available	508	Open in IMG/M
3300006176\|Ga0070765_100612194	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300009624\|Ga0116105_1012665	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1723	Open in IMG/M
3300009624\|Ga0116105_1121087	Not Available	672	Open in IMG/M
3300009624\|Ga0116105_1162600	Not Available	598	Open in IMG/M
3300009665\|Ga0116135_1001188	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	13544	Open in IMG/M
3300009665\|Ga0116135_1095792	Not Available	1070	Open in IMG/M
3300009759\|Ga0116101_1030959	Not Available	1093	Open in IMG/M
3300009759\|Ga0116101_1091440	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	699	Open in IMG/M
3300010339\|Ga0074046_10096311	All Organisms → cellular organisms → Bacteria	1913	Open in IMG/M
3300010341\|Ga0074045_10155482	All Organisms → cellular organisms → Bacteria → Acidobacteria	1551	Open in IMG/M
3300010361\|Ga0126378_11509055	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300010396\|Ga0134126_10021562	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	8176	Open in IMG/M
3300010865\|Ga0126346_1392691	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	857	Open in IMG/M
3300010937\|Ga0137776_1317810	Not Available	3663	Open in IMG/M
3300014160\|Ga0181517_10000389	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	60384	Open in IMG/M
3300014160\|Ga0181517_10000524	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	50271	Open in IMG/M
3300014160\|Ga0181517_10000524	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	50271	Open in IMG/M
3300014160\|Ga0181517_10237863	All Organisms → cellular organisms → Bacteria → Acidobacteria	979	Open in IMG/M
3300014160\|Ga0181517_10256279	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	934	Open in IMG/M
3300014160\|Ga0181517_10609522	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300014161\|Ga0181529_10067316	All Organisms → cellular organisms → Bacteria	2412	Open in IMG/M
3300014161\|Ga0181529_10093191	All Organisms → cellular organisms → Bacteria	1942	Open in IMG/M
3300014161\|Ga0181529_10404536	Not Available	737	Open in IMG/M
3300014161\|Ga0181529_10608957	Not Available	569	Open in IMG/M
3300014167\|Ga0181528_10133524	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	1344	Open in IMG/M
3300014167\|Ga0181528_10173708	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1165	Open in IMG/M
3300014169\|Ga0181531_10350628	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	905	Open in IMG/M
3300014169\|Ga0181531_10353894	Not Available	901	Open in IMG/M
3300014201\|Ga0181537_10602298	Not Available	749	Open in IMG/M
3300014489\|Ga0182018_10033156	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3264	Open in IMG/M
3300014490\|Ga0182010_10427301	Not Available	725	Open in IMG/M
3300014492\|Ga0182013_10058478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Sporolactobacillaceae → Scopulibacillus → Scopulibacillus darangshiensis	2857	Open in IMG/M
3300014492\|Ga0182013_10144521	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter bradus	1511	Open in IMG/M
3300014492\|Ga0182013_10455194	Not Available	675	Open in IMG/M
3300014493\|Ga0182016_10000293	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	62346	Open in IMG/M
3300014493\|Ga0182016_10050424	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	3251	Open in IMG/M
3300014493\|Ga0182016_10078169	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2421	Open in IMG/M
3300014493\|Ga0182016_10355230	Not Available	879	Open in IMG/M
3300014493\|Ga0182016_10363714	Not Available	866	Open in IMG/M
3300014495\|Ga0182015_10007311	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	10804	Open in IMG/M
3300014498\|Ga0182019_10699393	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	718	Open in IMG/M
3300014499\|Ga0182012_10226000	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
3300014654\|Ga0181525_10106465	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	1549	Open in IMG/M
3300014655\|Ga0181516_10049323	All Organisms → cellular organisms → Bacteria → Acidobacteria	2129	Open in IMG/M
3300014655\|Ga0181516_10157108	Not Available	1153	Open in IMG/M
3300014657\|Ga0181522_10148303	Not Available	1371	Open in IMG/M
3300014658\|Ga0181519_10002862	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	14367	Open in IMG/M
3300014658\|Ga0181519_10145490	Not Available	1513	Open in IMG/M
3300014658\|Ga0181519_10207825	Not Available	1231	Open in IMG/M
3300014838\|Ga0182030_10107687	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	3797	Open in IMG/M
3300014838\|Ga0182030_10333525	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1638	Open in IMG/M
3300014838\|Ga0182030_11181592	Not Available	655	Open in IMG/M
3300016698\|Ga0181503_1204007	Not Available	552	Open in IMG/M
3300016701\|Ga0181509_1331467	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300016728\|Ga0181500_1046165	All Organisms → cellular organisms → Bacteria → Acidobacteria	569	Open in IMG/M
3300016750\|Ga0181505_10329535	Not Available	630	Open in IMG/M
3300016750\|Ga0181505_10956075	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	991	Open in IMG/M
3300017942\|Ga0187808_10151545	Not Available	1021	Open in IMG/M
3300017988\|Ga0181520_10000928	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	62338	Open in IMG/M
3300017988\|Ga0181520_10074630	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3035	Open in IMG/M
3300017988\|Ga0181520_10440777	Not Available	935	Open in IMG/M
3300017988\|Ga0181520_10652728	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	724	Open in IMG/M
3300018040\|Ga0187862_10683112	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300018044\|Ga0187890_10218240	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1078	Open in IMG/M
3300021170\|Ga0210400_10642654	Not Available	874	Open in IMG/M
3300022877\|Ga0224527_1071325	Not Available	609	Open in IMG/M
3300024295\|Ga0224556_1013674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2095	Open in IMG/M
3300027812\|Ga0209656_10504948	Not Available	528	Open in IMG/M
3300027853\|Ga0209274_10255931	Not Available	896	Open in IMG/M
3300028779\|Ga0302266_10049876	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1871	Open in IMG/M
3300028806\|Ga0302221_10137462	Not Available	1077	Open in IMG/M
3300028866\|Ga0302278_10262440	Not Available	820	Open in IMG/M
3300029911\|Ga0311361_10142662	All Organisms → cellular organisms → Bacteria	3177	Open in IMG/M
3300029911\|Ga0311361_11053850	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	672	Open in IMG/M
3300029913\|Ga0311362_10493298	All Organisms → cellular organisms → Bacteria → Acidobacteria	1142	Open in IMG/M
3300029914\|Ga0311359_10550003	Not Available	864	Open in IMG/M
3300029914\|Ga0311359_11010090	Not Available	560	Open in IMG/M
3300029919\|Ga0302141_1150142	Not Available	631	Open in IMG/M
3300029920\|Ga0302142_1079406	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300029922\|Ga0311363_10039792	All Organisms → cellular organisms → Bacteria	7586	Open in IMG/M
3300029922\|Ga0311363_10165467	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	2790	Open in IMG/M
3300029922\|Ga0311363_11225452	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300029955\|Ga0311342_10101339	All Organisms → cellular organisms → Bacteria	3055	Open in IMG/M
3300029999\|Ga0311339_10217217	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	2141	Open in IMG/M
3300030020\|Ga0311344_10077301	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3912	Open in IMG/M
3300030020\|Ga0311344_11084466	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300030044\|Ga0302281_10016236	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	4423	Open in IMG/M
3300030049\|Ga0302191_10005370	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7524	Open in IMG/M
3300030049\|Ga0302191_10219803	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
3300031718\|Ga0307474_11255159	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300032074\|Ga0308173_10508306	Not Available	1080	Open in IMG/M
3300032805\|Ga0335078_12147044	Not Available	591	Open in IMG/M
3300032895\|Ga0335074_10348902	All Organisms → cellular organisms → Bacteria	1647	Open in IMG/M
3300032895\|Ga0335074_10483199	All Organisms → cellular organisms → Bacteria	1295	Open in IMG/M
3300032895\|Ga0335074_11631781	Not Available	502	Open in IMG/M
3300032896\|Ga0335075_10420128	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	1410	Open in IMG/M
3300032896\|Ga0335075_10970003	Not Available	768	Open in IMG/M
3300032898\|Ga0335072_10000001	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1212572	Open in IMG/M
3300032898\|Ga0335072_10000001	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1212572	Open in IMG/M
3300032898\|Ga0335072_10128057	All Organisms → cellular organisms → Bacteria	3170	Open in IMG/M
3300032898\|Ga0335072_10441780	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	1375	Open in IMG/M
3300032898\|Ga0335072_10631238	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300034065\|Ga0334827_109897	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	899	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.25%
Aquatic	Environmental → Aquatic	36.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.59%
Freshwater	Environmental → Aquatic → Freshwater	35.90%
Peat	Environmental → Terrestrial → Peat	19.66%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.85%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	35.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	25.64%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	19.66%
Loam	Environmental → Terrestrial → Soil → Loam	9.40%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	8.55%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.85%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	29.06%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	19.66%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	13.68%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.84%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.71%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.85%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	22.22%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	11.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	10.26%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	10.26%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.84%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.42%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	3.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.56%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.56%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.71%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.71%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.71%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.71%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.85%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.85%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010865	Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014161	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016698	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016701	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016728	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300022877	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T0	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300028779	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_2	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029919	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2	Environmental	Open in IMG/M
3300029920	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_3	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030044	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2	Environmental	Open in IMG/M
3300030049	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_1	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300034065	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070741_106549862	3300005529	Surface Soil	MGGEDMDEKSSWMRVAITIAIDWRFIIAIVVLVLALLLR*
Ga0070741_112073791	3300005529	Surface Soil	MDEKSSWMRVVISIAIDWRFVMAVAFLVLALLLK*
Ga0070735_100530242	3300005534	Surface Soil	MDEKSSWMRVLITVAVDWRLVIALVALALLLLLR*
Ga0070733_101842062	3300005541	Surface Soil	MDEKSSWMRVAVTIAIDWRFITALVILVLALLLR*
Ga0070761_100150884	3300005591	Soil	MDEKSSWMRVAITIAIDWRLITALIVLVLALLLR*
Ga0070761_100335674	3300005591	Soil	MDEKSSWMRFAITIAIDWRFVLAVVFLVLALLLK*
Ga0070761_100426733	3300005591	Soil	MKETSSWMRFAVTIAIDWRFVLAVVILVLALLVK*
Ga0070761_101347872	3300005591	Soil	MDEKLSWMRVVITTAIDWRFVTALVILVLALLLK*
Ga0070762_113211642	3300005602	Soil	MDEKSSWMRVLITIAVDWRFVVALVVLVLVLLLK*
Ga0070764_104083141	3300005712	Soil	LDGKSSWMRVAITIAIDWRFVIALVILVLALLVK*
Ga0070717_106498121	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MAERPSWMRVAITIAVDWRFVTALVVLVLALLLLK*
Ga0070717_108107642	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MDEKSSWMRFAVTIAIDWRFVLAVVLLVLALLMK*
Ga0070717_121040482	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MDEKSSWMRVAIRIAIDWRFITALVILVLALLLR*
Ga0070765_1006121942	3300006176	Soil	MDERSSWMRVAITIAIDWRFLVALAILVLALLLR*
Ga0116105_10126653	3300009624	Peatland	PLDGKTSRMRVLITIAVDWRFVMAVVVLVLMLLLSK*
Ga0116105_11210872	3300009624	Peatland	MGEKSPRMRVAITIAIDWRFVMALVILVLALLMR*
Ga0116105_11626001	3300009624	Peatland	MDEKSSWMRFAITIAVDWRFVLAIVFLVLALLLK*
Ga0116135_100118813	3300009665	Peatland	MDEKSSRMRVLITRAIDWRFVIALVILVLMLLAK*
Ga0116135_10957922	3300009665	Peatland	MGGEDMDEKSSWMRFAITIAIDWRFVLAIVFLVLALLLK*
Ga0116101_10309591	3300009759	Peatland	MAEKSSWMHVLITVAIDWRFVIALAILVLALLMR*
Ga0116101_10914401	3300009759	Peatland	MDDKSSWMRVLITIAVDWRFVMAVVVLTLLLLLR*
Ga0074046_100963113	3300010339	Bog Forest Soil	EGMDEKSSWMRFAITIAIDRRFVLAVVFLVLALLLK*
Ga0074045_101554824	3300010341	Bog Forest Soil	MDEKSSWMRFAITIAIDWRFVLAVVFLVLALLLR*
Ga0126378_115090552	3300010361	Tropical Forest Soil	MGEKSSWLRLAITIAIDWRFVTAIVILTLALLLLR*
Ga0134126_100215622	3300010396	Terrestrial Soil	MDEKSSWMRVAITIAVDWRFIIAVVVLVLLLLLR*
Ga0126346_13926912	3300010865	Boreal Forest Soil	MDEKSSWMRVAITIAVDWRFVTALVLLALALLLR*
Ga0137776_13178105	3300010937	Sediment	MGEKSSWMRVAITIAVDWRFVTAVVILVLALLLR*
Ga0181517_1000038938	3300014160	Bog	MGEKSSWMRIAITIAIDWRFVMAVVLLVLALLVLR*
Ga0181517_1000052414	3300014160	Bog	MDGKTSWMRVVITIAIAWRFVMALVLLVLALLLLR*
Ga0181517_1000052416	3300014160	Bog	MDGKTSWMRVVITIAIEWRFVMALVLLVLALLLLR*
Ga0181517_102378631	3300014160	Bog	MVEKSSSMHVVITVAIDWRFVIALAILVLALLMK*
Ga0181517_102562792	3300014160	Bog	MDEKSSWMQFAVTIAIDWRFVLAVVFLVLALLLR*
Ga0181517_106095221	3300014160	Bog	MDEKSSWMRVIITIAVDWRFVMALVVLALLLLLSK*
Ga0181529_100673162	3300014161	Bog	MDEKSSWMRVAITIAIDWRFVVAVVLLVLALLTK*
Ga0181529_100931912	3300014161	Bog	MDERSSWMRFAVTVAIDWRFVLAIAFLVLTILLR*
Ga0181529_104045362	3300014161	Bog	VRTMDKKLSWMRVAISIAIDWRFVLALVLLVLALLLLR*
Ga0181529_106089571	3300014161	Bog	MDEKSSWMRVVIKIGIDWRFVMALVLLVLALLTK*
Ga0181528_101335242	3300014167	Bog	MDEKSSWMRVLITVAVDWRFVLALVILALLLLLK*
Ga0181528_101737082	3300014167	Bog	VRPVDEKSSWMRVIITIAVDWRFVMAVVLLMLLLLIK*
Ga0181531_103506283	3300014169	Bog	MGDKSPWMKVAITIAVDWRFVMALAILALALLLR*
Ga0181531_103538942	3300014169	Bog	LDEKSSWTRVAISIAVDWRFVLALVILVLALLMR*
Ga0181537_106022981	3300014201	Bog	MGDKSPWMKVAITIAVDWRFVMALVILALALLMR*
Ga0182018_100331563	3300014489	Palsa	GRLDERSSWMRVAITIAIDWRFVVALVILVLALLMR*
Ga0182010_104273011	3300014490	Fen	LDEKSSWTRVAITIAIDWRFVVALVVLVLALLLK*
Ga0182013_100584784	3300014492	Bog	MDERSSWMRFAITIAIDWRFVLAVVFLVLALLLR*
Ga0182013_101445212	3300014492	Bog	MDEKSSWMRLAITIAIDWRFVLAVVFLVLALLMK*
Ga0182013_104551941	3300014492	Bog	MDEKSSWMRAAITIAIDWGFITALVILVLALLLK*
Ga0182016_1000029338	3300014493	Bog	MDERSSWMRFAVTIAIDWRFVLAIVFLVLALLLKQ*
Ga0182016_100504242	3300014493	Bog	MDEKSSWMRVLITIAIDWRFVTALVILVLALLLR*
Ga0182016_100781692	3300014493	Bog	MGQKSPWMRVAVTIAIDWRFVMALVILVLALLTK*
Ga0182016_103552301	3300014493	Bog	MDEKSSWVRFALTIAIDWRFVLAVAILVLALLLR*
Ga0182016_103637142	3300014493	Bog	MDEKSSWMRMVITIAIDWRFVMAVVFLVLALLMK*
Ga0182015_100073118	3300014495	Palsa	MDEKSSWMRVLITIAVDWRFVVAVVILLLVLLLR*
Ga0182019_106993932	3300014498	Fen	MEEKSSWMRVVITIAIEWRFVMAVVLLVLMLLLLR*
Ga0182012_102260002	3300014499	Bog	MDEKSSWMRVVITIAIEWRFVMAVVLLVLALLLLG*
Ga0181525_101064652	3300014654	Bog	KEVRTMDERSSWMRVIITIAIDWRFVTALAILVLALLLK*
Ga0181516_100493233	3300014655	Bog	MDAKSSWMRVVITIVIEWRFVMAVVLLVLALLLLR*
Ga0181516_101571082	3300014655	Bog	MGEKSSWIRLAVIVAIDWRFVTVISILVLALLQR*
Ga0181522_101483032	3300014657	Bog	MDEKSSWMRFAITIAIDWRFVLAVVFFVLALLLK*
Ga0181519_100028624	3300014658	Bog	MDEKSSWVRFALTVAIDWRFVLAVVILVLALLMR*
Ga0181519_101454901	3300014658	Bog	EVRLMDEKSSWMRVLITDAVDWRFVLALVILALLLLLK*
Ga0181519_102078251	3300014658	Bog	RRRGRMGVKAPWIRVAITIAVDWRFVLVLVLLVLALLTK*
Ga0182030_101076871	3300014838	Bog	MDERSSWMRLLITVAIDWRFVIALVLLVLALLVK*
Ga0182030_103335252	3300014838	Bog	MDDKSSWMRVLITIAVDWRFVMAVVILTLLLLLR*
Ga0182030_111815921	3300014838	Bog	MAEKSSWMHVLVTVAIDWRFVIALAILVLALLMR*
Ga0181503_12040071	3300016698	Peatland	MKDSPSWMRVAITIAIEWRLVAALVFLALALLLLR
Ga0181509_13314672	3300016701	Peatland	MDKKLSWMRVAISIAIDWRFVLALVLLVLALLLLR
Ga0181500_10461652	3300016728	Peatland	GRMGEKSSWMRIAITIAIDWRFVMAVVLLVLALLLLR
Ga0181505_103295351	3300016750	Peatland	MDAKSSWMRVVITIVIEWRFVMAVVLLVLALLLLR
Ga0181505_109560752	3300016750	Peatland	MDAKSSWMRVVITIAIEWRFVMVVVLLVLTLLLLR
Ga0187808_101515452	3300017942	Freshwater Sediment	VVTGSEDMDEKSSWMRFAITIAIDWRFVLAVVFLVLALLMR
Ga0181520_1000092811	3300017988	Bog	MGEKSSWMRIAITIAIDWRFVMAVVLLVLALLVLR
Ga0181520_100746302	3300017988	Bog	MDERSSWMRVVITVAIEWRLVMAVVLLVLALLSLR
Ga0181520_104407772	3300017988	Bog	MDEKSSWMRFAVTIAIDWRFVLAIVFLVLALLLKQ
Ga0181520_106527282	3300017988	Bog	MDEKSSWMRVIITIAVDWRFVMALVVLALLLLLSK
Ga0187862_106831121	3300018040	Peatland	RLDEKSSWTRVAISIAIDWRFVVALVILVLALLLAR
Ga0187890_102182402	3300018044	Peatland	MDEKSSWMRVIITIAVDWRFVVAIVILLLTLLLIK
Ga0210400_106426542	3300021170	Soil	TDEKSSWMRVVITIAIDWRFVTALVILVLTLLLKQ
Ga0224527_10713251	3300022877	Soil	RMDERSSWMRLLITVAIDWRFVIALVLLVLALLVK
Ga0224556_10136741	3300024295	Soil	AKEVRALDEKSSWTRLAISIAIDWRFVLALVILALALLLR
Ga0209656_105049481	3300027812	Bog Forest Soil	GGEGMDEKSSWMRFAITIAIDRRFVLAVVFLVLALLLK
Ga0209274_102559312	3300027853	Soil	SKGGEDMDEKSSWMRVAITIAIDWRLITALIVLVLALLLR
Ga0302266_100498762	3300028779	Bog	MGGEDMDEKSSWMRMVITIAIDWRFVMAVVFLVLALLMK
Ga0302221_101374622	3300028806	Palsa	RAFDEKSSWTRLAISIAIDWRFVLALVILALALLLR
Ga0302278_102624402	3300028866	Bog	MKGKLPWLQVAIMVAIDWRFIIALAVFVLALLLRR
Ga0311361_101426621	3300029911	Bog	MTNPTSWVRLAITIAIDWRFVLVVVFLALALLLYG
Ga0311361_110538501	3300029911	Bog	RLDEKSSWMRVAITIAIDWRFVTALVLLVLALLLR
Ga0311362_104932981	3300029913	Bog	AKEVRTMKEKSSWMRLAITVAIDWRLVLAVVLLVLALLMR
Ga0311359_105500031	3300029914	Bog	EDMDEKSSWMRMVITIAIDWRFVMAVVFLVLALLMK
Ga0311359_110100901	3300029914	Bog	MEEKSSRMRVVITVAIEWRFVMAVVLLVLALLLLG
Ga0302141_11501421	3300029919	Bog	GRMDEKSSWMRVAITIAIDWRFITALVILVLALLLR
Ga0302142_10794061	3300029920	Bog	NEVRALGDKSSWMRVAITIAVDWRFVIALVILALALLMK
Ga0311363_100397923	3300029922	Fen	MKDQTSWVRLAITIAIDWRFVLVVVFLALALLLYG
Ga0311363_101654672	3300029922	Fen	MSDKPSWMRVAIIVAIDWRLVTAVVFLVLALLLLR
Ga0311363_112254521	3300029922	Fen	GRMKDQTSWVRLAITIAIDWRFVFVVVFLALALLLYR
Ga0311342_101013391	3300029955	Bog	VRARDEKSSWMRVLITIAIDWRFVTALVILVLALLLR
Ga0311339_102172171	3300029999	Palsa	RLDEKSSWMRVAITIAIDWRFVIALVVLVLALLLK
Ga0311344_100773014	3300030020	Bog	GGEDMDEKSSWMRMVITIAIDWRFVMAVVFLVLALLMK
Ga0311344_110844662	3300030020	Bog	GMDEKSSWVRFALTIAIDWRFVMAVVILVLVLLMK
Ga0302281_100162361	3300030044	Fen	ALGDKSSWMRVAITIAVDWRFVIALVILALALLMK
Ga0302191_100053705	3300030049	Bog	KGGEGEMGQKSPWMRVAVTIAIDWRFVMALVILVLALLTK
Ga0302191_102198031	3300030049	Bog	WEVRRLDEKSSWMRVAVTIAIDWRFVVALVILVLALLVK
Ga0307474_112551591	3300031718	Hardwood Forest Soil	MAERPSWMRVAITIAIDWRFVTALVVLVLALLLLK
Ga0308173_105083062	3300032074	Soil	RRLDERSSWMRVAITIAVDWRFVMALVILALALLLK
Ga0335078_121470442	3300032805	Soil	RPLGEKSSWMRVIITVAVDWRFVMALVILALLLLIR
Ga0335074_100571144	3300032895	Soil	MDEKSSWTRLAITLAIDWRFVMAVVILVVLVLLMK
Ga0335074_103489022	3300032895	Soil	MAQKSSWLQVLITIVIDWRFVTAVVALLLLLLLLK
Ga0335074_104831992	3300032895	Soil	MAQKSSWLQVLITIVIDWRFVTAVVALLLLLILLK
Ga0335074_116317812	3300032895	Soil	EVRTEMKETSSWMRVAIAIAVDWRFVTALVLLVPVLLLR
Ga0335075_104201282	3300032896	Soil	MQEVSTMDARSSWLRVLITIAVDWRFVLTLVVLLLLLLMK
Ga0335075_109700032	3300032896	Soil	RGGEDMDEKSSWMRVAITIAVDWRFVLALVVLVLALLLR
Ga0335072_10000001871	3300032898	Soil	MAQKSSWLQVIITIAVDWRFVMAFVALLLLLLLLK
Ga0335072_10000001872	3300032898	Soil	MAQKSSWLQVLITIVIDWRFVTAFVALLLLLLLLK
Ga0335072_101280572	3300032898	Soil	MQEVSTMDGRSSWLRVLITIAVDWRFVLTLVVLLLLLLMK
Ga0335072_104417802	3300032898	Soil	WKEVRPVDEKSSWMRVLIAIAIDWRFVLALAFLALLLLMR
Ga0335072_106312382	3300032898	Soil	MDEKSSWMRVLITIVVDWRFVIAVVIRVLMLLLSK
Ga0334827_109897_483_590	3300034065	Soil	MDERSSWMRFAVTIAIDWRFVLAIVFLVLALLLKQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077528

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences