Metagenome Family F077214

Basic Information
Family ID	F077214
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	58 residues
Representative Sequence	MKFYKANPIEFYVSTAGYLVFKNYSISIILTPEQSKILLDQLPDLIDLQDEHWTGVEEE
Number of Associated Samples	91
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	86.32 %
% of genes near scaffold ends (potentially truncated)	22.22 %
% of genes from short scaffolds (< 2000 bps)	89.74 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (80.342 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (19.658 % of family members)
Environment Ontology (ENVO)	Unclassified (52.991 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (60.684 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. 1B570J29581_1042862 2B570J29032_1096989422 3JGI25908J49247_100220544 4JGI25908J49247_100533492 5JGI25908J49247_100658382 6JGI25908J49247_100857252 7JGI25909J50240_10476842 8Ga0069718_161490842 9Ga0068876_101857152 10Ga0049081_101892472 11Ga0049081_102430612 12Ga0049082_102863141 13Ga0075470_100652172 14Ga0075470_100700004 15Ga0075471_103147961 16Ga0075464_105450162 17Ga0075459_10430844 18Ga0075472_100669241 19Ga0102828_11195072 20Ga0105746_13320262 21Ga0108970_116362742 22Ga0114351_12396782 23Ga0114364_10977581 24Ga0114876_11333043 25Ga0114880_11276802 26Ga0114880_11624842 27Ga0105152_104742583 28Ga0114973_100319946 29Ga0114973_102429742 30Ga0102815_102705671 31Ga0114980_101971982 32Ga0114977_100438492 33Ga0114974_100372787 34Ga0114974_101828912 35Ga0114974_104828873 36Ga0114976_101735131 37Ga0114982_10287323 38Ga0129333_104724084 39Ga0114986_10313432 40Ga0114986_11054942 41Ga0153698_18825 42Ga0157210_10016155 43Ga0157498_10366471 44Ga0164293_101997944 45Ga0164293_106415962 46Ga0164292_102893971 47Ga0170791_102703361 48Ga0177922_106469571 49Ga0177922_107654753 50Ga0177922_109744674 51Ga0181350_10180607 52Ga0181365_11575951 53Ga0181344_11182151 54Ga0181356_10209338 55Ga0181356_12154812 56Ga0181343_10617514 57Ga0181343_11702644 58Ga0181358_12848512 59Ga0181348_11247171 60Ga0181355_10842413 61Ga0181359_10399323 62Ga0181359_12038022 63Ga0181359_12078182 64Ga0181359_12219812 65Ga0211733_103771513 66Ga0211735_101129922 67Ga0211731_107367823 68Ga0208091_10178802 69Ga0207941_10102291 70Ga0222714_104408162 71Ga0181353_10238851 72Ga0181353_10606544 73Ga0181351_10045371 74Ga0244775_100700522 75Ga0244775_112242462 76Ga0255186_10249502 77Ga0208546_10091497 78Ga0208147_10907532 79Ga0209850_10058011 80Ga0255074_10441462 81Ga0255071_10638101 82Ga0208306_10582142 83Ga0208974_11892312 84Ga0208975_11131111 85Ga0209599_100577332 86Ga0209297_11135642 87Ga0209190_10048129 88Ga0208305_100518752 89Ga0209596_10782821 90Ga0209296_10580176 91Ga0209296_10719272 92Ga0209296_12582362 93Ga0209500_101858371 94Ga0209230_103485042 95Ga0209298_100217422 96Ga0247723_10497193 97Ga0315907_101992892 98Ga0315907_102161063 99Ga0315907_112238691 100Ga0315288_108378823 101Ga0315909_101989184 102Ga0315297_107117423 103Ga0315297_109609222 104Ga0315285_100937629 105Ga0315294_103017262 106Ga0315274_119702922 107Ga0315284_119913741 108Ga0315295_106811912 109Ga0315283_103738422 110Ga0315283_106252071 111Ga0315275_107073701 112Ga0315273_110023962 113Ga0334722_103638333 114Ga0334994_0121136_1239_1418 115Ga0335023_0143898_940_1119 116Ga0335056_0514043_276_464 117Ga0335052_0253844_810_989
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. 1B570J29581_1042862 2B570J29032_1096989422 3JGI25908J49247_100220544 4JGI25908J49247_100533492 5Ga0069718_161490842 6Ga0068876_101857152 7Ga0049081_102430612 8Ga0075472_100669241 9Ga0181343_11702644 10Ga0255186_10249502 11Ga0315288_108378823 12Ga0315297_107117423 13Ga0315274_119702922 14Ga0315275_107073701
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. 1Ga0049082_102863141 2B570J29581_1042862 3B570J29032_1096989422 4Ga0069718_161490842 5Ga0075470_100652172 6Ga0075470_100700004 7Ga0075471_103147961 8Ga0114351_12396782 9Ga0114876_11333043 10Ga0114880_11276802 11Ga0114880_11624842 12Ga0114977_100438492 13Ga0114982_10287323 14Ga0153698_18825 15Ga0164293_106415962 16Ga0181343_10617514 17Ga0181358_12848512 18Ga0181355_10842413 19Ga0181359_12038022 20Ga0211735_101129922 21Ga0255074_10441462 22Ga0247723_10497193 23Ga0315297_107117423 24Ga0315297_109609222 25Ga0334722_103638333 26Ga0335056_0514043_276_464
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.14% β-sheet: 14.94% Coil/Unstructured: 60.92%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF05866	RusA	9.40
PF01555	N6_N4_Mtase	5.13
PF07120	DUF1376	4.27
PF00145	DNA_methylase	2.56
PF01507	PAPS_reduct	2.56
PF13392	HNH_3	1.71
PF06378	DUF1071	1.71
PF05772	NinB	0.85
PF00182	Glyco_hydro_19	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	Replication, recombination and repair [L]	9.40
COG0863	DNA modification methylase	Replication, recombination and repair [L]	5.13
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	5.13
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	5.13
COG3756	Uncharacterized conserved protein YdaU, DUF1376 family	Function unknown [S]	4.27
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	2.56
COG3179	Chitinase, GH19 family	Carbohydrate transport and metabolism [G]	0.85
COG3979	Chitodextrinase	Carbohydrate transport and metabolism [G]	0.85

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.74 %
Unclassified	root	N/A	10.26 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	2.56 %
Unclassified	root	N/A	10.26 %
Viruses	superkingdom	All Organisms → Viruses	87.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.56 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	80.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.84 %
Unclassified	root	N/A	10.26 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	80.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.56 %
Unclassified	root	N/A	10.26 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.84 %
Unclassified	root	N/A	10.26 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	80.34 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.71 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	80.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.84 %
Unclassified	root	N/A	10.26 %

Name	Rank	Taxonomy	Distribution
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.85 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	78.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.84 %
Unclassified	root	N/A	10.26 %

Name	Rank	Taxonomy	Distribution
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.84 %
Unclassified	root	N/A	10.26 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	78.63 %

Name	Rank	Taxonomy	Distribution
Burkholderia cepacia complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.84 %
Unclassified	root	N/A	10.26 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	78.63 %

Name	Rank	Taxonomy	Distribution
Burkholderia multivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia multivorans	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.84 %
Unclassified	root	N/A	10.26 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	78.63 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002274\|B570J29581_104286	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	895	Open in IMG/M
3300002408\|B570J29032_109698942	All Organisms → Viruses → Predicted Viral	1081	Open in IMG/M
3300003277\|JGI25908J49247_10022054	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1884	Open in IMG/M
3300003277\|JGI25908J49247_10053349	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1050	Open in IMG/M
3300003277\|JGI25908J49247_10065838	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	915	Open in IMG/M
3300003277\|JGI25908J49247_10085725	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	771	Open in IMG/M
3300003393\|JGI25909J50240_1047684	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	897	Open in IMG/M
3300004481\|Ga0069718_16149084	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	575	Open in IMG/M
3300005527\|Ga0068876_10185715	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1211	Open in IMG/M
3300005581\|Ga0049081_10189247	Not Available	741	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.15%
Host-Associated	Host-Associated	0.85%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	94.02%
Plants	Host-Associated → Plants	0.85%
Terrestrial	Environmental → Terrestrial	5.13%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	4.27%
Freshwater	Environmental → Aquatic → Freshwater	79.49%
Leaf	Host-Associated → Plants → Leaf	0.85%
Marine	Environmental → Aquatic → Marine	14.53%
Soil	Environmental → Terrestrial → Soil	0.85%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	8.55%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.42%
Lake	Environmental → Aquatic → Freshwater → Lake	42.73%
Lentic	Environmental → Aquatic → Freshwater → Lentic	28.21%
Lotic	Environmental → Aquatic → Freshwater → Lotic	1.71%
River	Environmental → Aquatic → Freshwater → River	2.56%
Sand	Environmental → Terrestrial → Soil → Sand	0.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.85%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	4.27%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.42%
Unclassified	Environmental → Aquatic → Marine → Unclassified	2.56%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.56%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	3.42%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	11.97%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	30.77%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	25.64%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	8.55%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	4.27%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.42%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	1.71%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	6.84%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	3.42%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.85%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.42%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	1.71%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.85%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.85%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	5.98%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	5.98%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.42%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.56%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	2.56%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	1.71%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.85%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.85%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	19.66%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	13.68%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.56%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	4.27%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.85%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	1.71%
Freshwater, Surface Ice	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice	0.85%
Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment	0.85%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	0.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	11.11%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.85%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002274	Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005584	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF	Environmental	Open in IMG/M
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental	Open in IMG/M
3300006641	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J29581_1042862	3300002274	Freshwater	MKFLKSQPIEFFVAKDGFLVFQNYGIQIILNPEQSKILQQQLPELIELQNKIWTGIDEEEE*
B570J29032_1096989422	3300002408	Freshwater	MKFLKSNPIEFYVSKLGYLVFKNYEISIVLTPEQTKVLAGQLPELMELQEKQWTGVEEE*
JGI25908J49247_100220544	3300003277	Freshwater Lake	MKFLKQHPIEFYISVAGYLVFQNYEIKIALTPEQTKVLQKELPDLIELQNKHWTGIDEEK
JGI25908J49247_100533492	3300003277	Freshwater Lake	MKFYKANPIEFYVSTAGYLVFKNYSISIILTPEQSKILLDQLPDLIDLQDEHWTGIEEE*
JGI25908J49247_100658382	3300003277	Freshwater Lake	MKFLKSNPIEFYVSKLGYLVFKNYEISIILTPEQTKVLASQLPELMELQERQWTGVEEA*
JGI25908J49247_100857252	3300003277	Freshwater Lake	MKFLKSNPIEFYVSKLGYLVFKNYEISIILTPEQTKVLASQLPELMELQEKQWTGVEEE*
JGI25909J50240_10476842	3300003393	Freshwater Lake	MKFLKSNPIEXYVSKLGYLVFKNYEISIILTPEQTKVLASQLPELMELQEKQWTGVEEE*
Ga0069718_161490842	3300004481	Sediment	MKFRKAEPVEFFISTAGYLVFQNYSITIVLTPDQSKVLLKQLPELIAKQEKHWTGIEEE*
Ga0068876_101857152	3300005527	Freshwater Lake	MKFLKSQPVEFYVSTFGYLVFKNYEIKIILNPEQSKILQKMLPELIEQQDQVWTGIDEE*
Ga0049081_101892472	3300005581	Freshwater Lentic	MKFYKANPIEFYVSTAGYLVFKNYSISIILTPEQSKILLEQLPDLIDLQDEHWTGVEEE*
Ga0049081_102430612	3300005581	Freshwater Lentic	LKFLKAEPIEFYVSDSGYLVFKNYSITIVLTPEQSRFLQKQLPDLIEEQEELWTGVDTE*
Ga0049082_102863141	3300005584	Freshwater Lentic	MKFYKANPIEFYVSTAGYLVFKNYSISIILTPEQSKILLDQLPDLIDLQDEHWTGVEEE*
Ga0075470_100652172	3300006030	Aqueous	MKFRKANPIEFYVSTAGYLVFKNYTITITLTPDQTKMLQDQLPEIIELQEQHWTGVEEE*
Ga0075470_100700004	3300006030	Aqueous	MKFYKSHPIEIYVSTPGYLVFKNYDVSIILTPEQSKHLLNQLPILIELQEKQWTGIEEE*
Ga0075471_103147961	3300006641	Aqueous	MKFLKQHPIEFYVSVAGYLVFQNYEIKIALTPEQTKVLASQLPELMELQKKHWTGIDENVSL*
Ga0075464_105450162	3300006805	Aqueous	MKFLKAEPVEFFVSVSGYLVFKNYTITILLTPEQSKVLQKQLPDLIKDQEEWWTGVDTE*
Ga0075459_10430844	3300006863	Aqueous	MKFRKANPIEFYVSTAGYLVFKNYTITIALTPDQTKMLQDQLPEIIELQEQHWTGDEEE*
Ga0075472_100669241	3300006917	Aqueous	KSHPIEIYVSTPGYLVFKNYDVSIILTPEQSKHLLNQLPILIELQEKQWTGIEEE*
Ga0102828_11195072	3300007559	Estuarine	MKFLKAEPVEFYVSDSGYLVFKNYSITIILTPEQSRFLQKQLPDLIEEQDELWTGVDTE*
Ga0105746_13320262	3300007973	Estuary Water	MKFLKAEPVEFFVSVSGYLVFKNYTITILLTPEQSKVLQKQLPDLIEEQDELWTGVDTE*
Ga0108970_116362742	3300008055	Estuary	VKFLKAEPIEFYVSDSGYLVFKNYSITIILTPEQSRFLQKQLPDLIEEQDELWTGVDTE*
Ga0114351_12396782	3300008117	Freshwater, Plankton	MKFHKANPVEFYVSTAGYLVFKNYSITIILTPDQSKILLNQLPDLIDIQDQQWTGIEEE*
Ga0114364_10977581	3300008267	Freshwater, Plankton	MKFYKANPIEFYVSTAGYLVFKNYSISIILTPEQSKILLDQLPDLIDLQDEHWTGIE
Ga0114876_11333043	3300008448	Freshwater Lake	MKFRKAEPVEFFVSTAGYLVFQNYSITIVLTPDQSKVLQKQLPELIATQEQVWTGIDE*
Ga0114880_11276802	3300008450	Freshwater Lake	MKFLKSQPVEFYVSTFGYLVFKNYEIRIILNPEQSKILQKMLPELIEQQDQVWTGIDEE*
Ga0114880_11624842	3300008450	Freshwater Lake	VKFRKANPIEFYVSTAGYLVFKNYSISIILTPEQSKTLLDQLPDLINIQDEHWTGIDEE*
Ga0105152_104742583	3300009039	Lake Sediment	MKFRKANPIEFYVSTAGYLVFKTYSISIILTPEQSKTLLDQLPDLIDLQDEHWTGIDEE*
Ga0114973_100319946	3300009068	Freshwater Lake	MKFLKSNPIEFYVSKVGYLVFKNYEISIILTPEQTKVLASQLPELMELQERQWTGVEEE*
Ga0114973_102429742	3300009068	Freshwater Lake	MKFLKSNPIEFYVSKLGYLVFKNYEISIILTPEQTKVLANQLPELMELQEKQWTGVEEE*
Ga0102815_102705671	3300009080	Estuarine	IKEQIVKFLKAEPIEFYVSDSGYLVFKNYSITIILTPEQSRFLQKQLPDLIEEQDELWTGVDTE*
Ga0114980_101971982	3300009152	Freshwater Lake	MKFLKSNPIEFYVSKLGYLVFKNYEISIILTPEQTKVLASELPELMELQQKQWTGVEEE*
Ga0114977_100438492	3300009158	Freshwater Lake	MKFRKANPVEFYVSTAGYLVFKNYSITIALTPDQTKMLQDQLAEIIELQDQHWTGIEEE*
Ga0114974_100372787	3300009183	Freshwater Lake	MKFHKANPVEFYVSTAGYLVFKNYSITIILTPDQSKILLDQLPDLIDLQDEHWTGIEEE*
Ga0114974_101828912	3300009183	Freshwater Lake	MKFLKAEPIEFYVSDSGYLVFKNYSITIILTPEQSRLLQKQLPDLIEEQNELWTGVDEE*
Ga0114974_104828873	3300009183	Freshwater Lake	MKFLKSQPIEFFVAKDGFLVFQNYGIQIILNPEQSKILQQQLPQLIELQNKIWTGIDEEDT*
Ga0114976_101735131	3300009184	Freshwater Lake	MKFLKSNPIEFYVSKLGYLVFKNYEISIILTPEQTKVLASQLPELMELQEKQWT
Ga0114982_10287323	3300009419	Deep Subsurface	MKFRKAEPVEFFVSTVGYLVFQNYSITIILTPEQAKVLQKQLPDLIEKQEQHWTGIEEE*
Ga0129333_104724084	3300010354	Freshwater To Marine Saline Gradient	MKFLKAEPIEFYVSDSGYLVFKNYSITIVLTPEQSRFLQKQLPDLIEEQDELWTGVDTE*
Ga0114986_10313432	3300010374	Deep Subsurface	MKFHKANPVEFYVSTAGYLVFKNYSITIILTPDQSKILLDQLPDLIDIQDQQWTGIE
Ga0114986_11054942	3300010374	Deep Subsurface	YVSDSGYLVFKNYSITIVLTPEQSRFLQKQLPDLIEEQEELWTGVDTE*
Ga0153698_18825	3300011335	Freshwater	MKFRKAEPVEFFVSTAGYLVFQNYSITIVLTPEQSKVLLKQLPDMIAKQEQHWTGVEEE*
Ga0157210_10016155	3300012665	Freshwater	MKFRKANPIEFYVSTAGYLVFKNYTITIALTPDQTKMLQDQLPEIIELQEQHWTGVEEE*
Ga0157498_10366471	3300012666	Freshwater, Surface Ice	MKFYKANPIEFYVSTAGYLVFKNYSISIILTPEQSKILLDQLPDLIDLQDEQWTGVEEE*
Ga0164293_101997944	3300013004	Freshwater	MKFLKAEPVEFFVSVSGYLVFKNYTITILLTPEQSKVLQKQLPDLIKDQDEWWTGVDTE*
Ga0164293_106415962	3300013004	Freshwater	MKFLKQHPIEFYISVAGYLVFQNYEIKIALTPEQTKVLQKELPDLIELQNKHWTGIDEEQE*
Ga0164292_102893971	3300013005	Freshwater	MKFHKANPVEFYVSTAGYLVFKNYSITIILTPDQSKILLDQLPDLIDIQDQQWTGIEEE*
Ga0170791_102703361	3300013295	Freshwater	LKFLKAEPIEFYVSDSGYLVFKNYSITIILTPEQSRLLQKQLPDLIEEQNELWTGVDEE*
Ga0177922_106469571	3300013372	Freshwater	KFYKANPIEFYVSTAGYLVFKNYSISIILTPEQSKILLDQLPDLIDLQDEHWTGIEEE*
Ga0177922_107654753	3300013372	Freshwater	MKFLKAEPIEFYISDSGYLVFKNYSITIVLTPEQSRFLQKQLPDLIEEQEELWTGVDTE*
Ga0177922_109744674	3300013372	Freshwater	MKFLKSQPVEFYVSTFGYLVFKNYEIKIILNPEQSKILQKMLPELIEQQDQIWTGIDEEDE*
Ga0181350_10180607	3300017716	Freshwater Lake	NPIEFYVSKLGYLVFKNYEISIILTPEQTKVLASQLPELMELQERQWTGVEEA
Ga0181365_11575951	3300017736	Freshwater Lake	MKFLKAEPVEFYVSVTGYLVFKNYTITILLTPEQSKVLQKQLPDLIAEQDKEWTGVDEE
Ga0181344_11182151	3300017754	Freshwater Lake	MKFRKAEPVEFFVSTVGYLVFQNYSITIILTPEQSKVLLKQLPELIEKQEQHWTGIEEE
Ga0181356_10209338	3300017761	Freshwater Lake	MKFLKSNPIEFYVSKLGYLVFKNYEISIILTPEQTKVLASQIPELMELQERQWTGVEEA
Ga0181356_12154812	3300017761	Freshwater Lake	MKFLKAEPVEFYVSVTGYLVFKNYTITILLTPEQSKVLQKQLPDLIKDQDEWWTGVDTE
Ga0181343_10617514	3300017766	Freshwater Lake	MKFLKAEPVEFFVSVSGYLVFKNYTITILLTPEQSKVLQKQLPDLIKDQDEWWTGVDTE
Ga0181343_11702644	3300017766	Freshwater Lake	EFFVSTVGYLVFQNYSITIILTPEQSKVLLKQLPELIEKQEQHWTGIEEE
Ga0181358_12848512	3300017774	Freshwater Lake	MKFLKAEPVEFYVSVTGYLVFKNYTITILLTPEQSKVLQKQLPDLIAEQDKEWTGVDTE
Ga0181348_11247171	3300017784	Freshwater Lake	MKFLKQHPIEFYISVAGYLVFQNYEIKIALTPEQTKVLQKELPDLIELQNKH
Ga0181355_10842413	3300017785	Freshwater Lake	MKFLKAEPIEFYVSDSGYLVFKNYSITIVLTPEQSRFLQKQLPDLIEEQEELWTGVDTE
Ga0181359_10399323	3300019784	Freshwater Lake	MKFLKSNPIEFYVSKLGYLVFKNYEISIILTPEQTKVLASQLPELMELQEKQWTGVEEE
Ga0181359_12038022	3300019784	Freshwater Lake	MKFLKSQPVEFFISTEGYLVFKNYQIEITLNPEQSRILQNMLPELIEEQDFVWTGIDKE
Ga0181359_12078182	3300019784	Freshwater Lake	MKFYKANPIEFYVSTAGYLVFKNYSISIILTPEQSKILLDQLPDLIDLQDEHWTGIEEE
Ga0181359_12219812	3300019784	Freshwater Lake	MKFYKANPIEFYVSTAGYLVFKNYSISIILTPEQSKILLDQLPDLIDLQDEHWTGVEEE
Ga0211733_103771513	3300020160	Freshwater	MKFRKANPIEFYVSTAGYLVFKNYSISIILTPEQSKTLLDQLPDLIDLQDQHWTGIDEE
Ga0211735_101129922	3300020162	Freshwater	MKFLKSNPIEFYVSTAGYLVFKNYSISIILTPEQSKTLLDQLPDLIDLQDQHWTGIDEE
Ga0211731_107367823	3300020205	Freshwater	MKFRKANPIEFYVSTAGYLVFKNYSISIILTPEQSKTLLDQLPDLIDIQDEHWTGIDEE
Ga0208091_10178802	3300020506	Freshwater	MKFLKSQPIEFFVAKDGFLVFQNYGIQIILNPEQSKILQQQLPELIELQNKIWTGIDEEE
Ga0207941_10102291	3300020539	Freshwater	VEFYVSTAGYLVFKNYSITIILTPDQSKILLDQLPDLIDIQDQQWTGIEEE
Ga0222714_104408162	3300021961	Estuarine Water	MKFRKANPIEFYVSTAGYLVFKNYSISIILTPEQSKTLLDQLPDLIDLQDQYWTGIDEE
Ga0181353_10238851	3300022179	Freshwater Lake	MKFHKANPVEFYVSTAGYLVFKNYSITIILTPDQSKILLDQLPDLIDIQEQQWTGIEEE
Ga0181353_10606544	3300022179	Freshwater Lake	MKFRKAEPVEFFVSTAGYLVFQNYSITIVLTPDQSKVLLKQLPDLITKQEQHWTGIEEE
Ga0181351_10045371	3300022407	Freshwater Lake	FLKSNPIEFYVSKLGYLVFKNYEISIILTPEQTKVLASQLPELMELQEKQWTGVEEE
Ga0244775_100700522	3300024346	Estuarine	VKFLKAEPIEFYVSDSGYLVFKNYSITIILTPEQSRFLQKQLPDLIEEQDELWTGVDTE
Ga0244775_112242462	3300024346	Estuarine	MKFLKAEPVEFYVSDSGYLVFKNYSITIILTPEQSRFLQKQLPDLIEEQDELWTGVDTE
Ga0255186_10249502	3300024512	Freshwater	MKFLKAEPVEFFVSVSGYLVFKNYTITILLTPEQSKVLQKQLPDLIKDQDEWW
Ga0208546_10091497	3300025585	Aqueous	MKFRKANPIEFYVSTAGYLVFKNYTITITLTPDQTKMLQDQLPEIIELQEQHWTGVEEE
Ga0208147_10907532	3300025635	Aqueous	MKFRKANPIEFYVSTAGYLVFKNYTITIALTPDQTKMLQDQLPEIIELQEQHWTGVEEE
Ga0209850_10058011	3300026931	Sand	LKSNPIEFYVSKLGYLVFKNYEISIVLTPEQTKVLASQLPELMELQEKQWTGVEEE
Ga0255074_10441462	3300027121	Freshwater	MKFHKANPVEFYISTTGYLVFKNYSITILLTPEQSKVLLDQLPDLIDIQDQVWTGIEEE
Ga0255071_10638101	3300027127	Freshwater	EFYISTTGYLVFKNYSITILLTPEQSKVLLDQLPDLIDIQDQVWTGIEEE
Ga0208306_10582142	3300027214	Estuarine	MKFLKSNPIEFYVSKLGYLVFKNYEISIILTPEQTKVLASQLPELMELQE
Ga0208974_11892312	3300027608	Freshwater Lentic	MKFLKSNPIEFYVSKLGYLVFKNYEISIILTPEQTKVLASQLPELMELQ
Ga0208975_11131111	3300027659	Freshwater Lentic	MKFYKANPIEFYVSTAGYLVFKNYSISIILTPEQSKILLEQLPDLIDLQDEHWTGVEEE
Ga0209599_100577332	3300027710	Deep Subsurface	MKFRKAEPVEFFVSTVGYLVFQNYSITIILTPEQAKVLQKQLPDLIEKQEQHWTGIEEE
Ga0209297_11135642	3300027733	Freshwater Lake	MKFRKANPVEFYVSTAGYLVFKNYSITIALTPDQTKMLQDQLAEIIELQDQHWTGIEEE
Ga0209190_10048129	3300027736	Freshwater Lake	MKFLKSNPIEFYVSKLGYLVFKNYEISIILTPEQTKVLANQLPELMELQEKQWTGVEEE
Ga0208305_100518752	3300027753	Estuarine	MKFLKAEPVEFYVSASGYLVFKNYTITIILTPEQSRFLQKQLPDLIEEQDELWTGVDTE
Ga0209596_10782821	3300027754	Freshwater Lake	MKFYKANPIEFYVSTAGYLVFKNYSISIILTPEQSKILLDQLPDLIDLQDEHWT
Ga0209296_10580176	3300027759	Freshwater Lake	MKFHKANPVEFYVSTAGYLVFKNYSITIILTPDQSKILLDQLPDLIDLQDEHWTGIEEE
Ga0209296_10719272	3300027759	Freshwater Lake	MKFLKAEPIEFYVSDSGYLVFKNYSITIILTPEQSRLLQKQLPDLIEEQNELWTGVDEE
Ga0209296_12582362	3300027759	Freshwater Lake	MKFLKSQPIEFFVAKDGFLVFQNYGIQIILNPEQSKILQQQLPQLIELQNKIWTGIDEED
Ga0209500_101858371	3300027782	Freshwater Lake	LKFLKAEPIEFYVSDSGYLVFKNYSITIVLTPEQSRFLQKQLPDLIEEQEELWTGVDTE
Ga0209230_103485042	3300027836	Freshwater And Sediment	MKFLKSQPVEFYVSTFGYLVFKNYEIKIILNPEQSKILQKMLPELIEQQDQIWTGIDEED
Ga0209298_100217422	3300027973	Freshwater Lake	MKFLKSNPIEFYVSKLGYLVFKNYEISIILTPEQTKVLASELPELMELQQKQWTGVEEE
Ga0247723_10497193	3300028025	Deep Subsurface Sediment	MKFHKANPVEFFVSTAGYLVFKNYSITIILTPEQSKVLLDQLPDLIDLQEQHWTGIEEE
Ga0315907_101992892	3300031758	Freshwater	MKFHKANPVEFYVSTAGYLVFKNYSITIILTPDQSKILLNQLPDLIDIQDQQWTGIEEE
Ga0315907_102161063	3300031758	Freshwater	MKFLKSQPVEFYVSTFGYLVFKNYEIKIILNPEQSKILQKMLPELIEQQDQVWTGIDEE
Ga0315907_112238691	3300031758	Freshwater	MKFLKSQPVEFYVSTFGYLVFKNYEIKIILNPEQSKILQKMLPELIEQQDQVWTGIDEEE
Ga0315288_108378823	3300031772	Sediment	EFYVSDSGYLVFKNYTITIILTPDQSRFLQKQLPDLIEEQDELWTGIDEE
Ga0315909_101989184	3300031857	Freshwater	MKFLKSQPVEFYVSTFGYLVFKNYEIRIILNPEQSKILQKMLPELIEQQDQVWTGIDEE
Ga0315297_107117423	3300031873	Sediment	KFLKSQPVEFFISTQGYLVFKNYEIEIILTPEQSKVLQKQLPDLIKDQDEWWTGVDTE
Ga0315297_109609222	3300031873	Sediment	MKFLKSQPVEFFISTQGYLVFKNYEIEIILNPEQSTILQNMLPELLEEQAEVWTGVERE
Ga0315285_100937629	3300031885	Sediment	MKFLKAEPVEFFVSASGYLVFKNYTITILLTPEQSKVLQKQLPDLIKDQDEWWTGVDTE
Ga0315294_103017262	3300031952	Sediment	MKFLKSQPVEFFISTQGYLVFKNYEIEIILNPEQSTILQNMLPELLEEQAEVWTGVDEK
Ga0315274_119702922	3300031999	Sediment	QPVEFFISTQDYLVFKNYEIEIILNPEQSTILQNMLPELLEEQAEVWTGVDEK
Ga0315284_119913741	3300032053	Sediment	MKFLKSQPVEFFISTQGYLVFKNYEIEIILNPEQSTILQNMLPELLEEQAEVWTG
Ga0315295_106811912	3300032156	Sediment	MKFLKAEPVEFYVSDSGYLVFKNYSITIILTPEQSRFLQKQLPDLIKEQDELWTGVDTE
Ga0315283_103738422	3300032164	Sediment	MKFLKSQPVEFFISTQGYLVFKNYEIEIILNPEQSTILQNMLPELIEEQAEVWTGVDEK
Ga0315283_106252071	3300032164	Sediment	MKFLKAEPVEFYVSDSGYLVFKNYTITIILTPDQSRFLQKQLPDLIEEQDELWTGVDTE
Ga0315275_107073701	3300032401	Sediment	MKFLKSQPVEFFISTQGYLVFKNYEIEIILNPEQSTILQNMLPELLEE
Ga0315273_110023962	3300032516	Sediment	KRMKFLKSQPVEFFISTQGYLVFKNYEIEIILNPEQSTILQNMLPELLEEQAEVWTGVDE
Ga0334722_103638333	3300033233	Sediment	MKFLKAEPVEFYVSDSGYLVFKNYTITIILTPDQSRFLQKQLPDLIEEQDELWTGIDEE
Ga0334994_0121136_1239_1418	3300033993	Freshwater	MKFLKSNPIEFYVSKLGYLVFKNYEISIVLTPEQTKVLAGQLPELMELQEKQWTGVEEE
Ga0335023_0143898_940_1119	3300034050	Freshwater	LKFLKAEPIEFYVSDSGYLVFKNYSITIVLTPEQSRFLQKQLPDLIEEQDELWTGVDTE
Ga0335056_0514043_276_464	3300034120	Freshwater	MKFLKQHPIEFYVSVAGYLVFQNYEITIALTPEQTKVLQKQLPELMEVQDKHWTGIDTNVTP
Ga0335052_0253844_810_989	3300034279	Freshwater	LKQHPIEFYVSVAGYLVFQNYEITIALTPEQTKVLQKQLPELMEVQDKHWTGIDTNVTP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F077214

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences