Metagenome / Metatranscriptome Family F077014

Basic Information
Family ID	F077014
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	50 residues
Representative Sequence	MKTVLVATLALASLALSGCIIVIEQAPAEKAAPAKKAAAKPNPDSASK
Number of Associated Samples	70
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	12.07 %
% of genes near scaffold ends (potentially truncated)	24.79 %
% of genes from short scaffolds (< 2000 bps)	58.97 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (97.436 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (27.350 % of family members)
Environment Ontology (ENVO)	Unclassified (65.812 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (81.197 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. 1JGI12547J11936_10032906 2JGI12421J11937_100169892 3JGI12421J11937_100291302 4JGI12421J11937_100596092 5GOS2228_10289451 6M3t6FKB1_17734357 7JGI25908J49247_100915281 8JGI25910J50241_1000027612 9JGI25907J50239_10098392 10JGI25912J50252_100866072 11JGI25912J50252_101557042 12JGI25913J50563_10012154 13JGI25913J50563_10053242 14JGI25913J50563_10079062 15JGI25913J50563_10396431 16JGI25913J50563_10553951 17JGI25913J50563_10585171 18JGI25925J51416_100043094 19JGI25925J51416_100812581 20Ga0066179_100023801 21Ga0007759_103004951 22Ga0007759_115495691 23Ga0070374_101391684 24Ga0049083_100011886 25Ga0049083_100099863 26Ga0049083_100156974 27Ga0049085_1000042018 28Ga0049084_101207032 29Ga0049084_101341892 30Ga0049084_102692822 31Ga0075464_100852632 32Ga0075464_104292752 33Ga0075458_100755152 34Ga0102873_11896962 35Ga0102877_11114942 36Ga0102817_11274122 37Ga0102828_10091683 38Ga0102865_11517821 39Ga0105746_12735712 40Ga0102831_11993752 41Ga0114980_1000157313 42Ga0114980_100508983 43Ga0114980_101306402 44Ga0114980_102565682 45Ga0114980_103356782 46Ga0114980_106983792 47Ga0114978_1000036217 48Ga0114978_100208033 49Ga0114978_102444231 50Ga0114978_102960052 51Ga0114981_1000130113 52Ga0114969_100645354 53Ga0114969_101586352 54Ga0114974_102574491 55Ga0114974_106106171 56Ga0133913_107055344 57Ga0133913_134115642 58Ga0129318_101180932 59Ga0129318_101182152 60Ga0139557_10640032 61Ga0139556_10015094 62Ga0139556_10382522 63Ga0138283_12039702 64Ga0138280_11364201 65Ga0170791_134038592 66Ga0170791_134274894 67Ga0177922_100660832 68Ga0211736_107786778 69Ga0211734_108357264 70Ga0211731_102136205 71Ga0214206_100005831 72Ga0194048_1000039114 73Ga0194053_104148371 74Ga0222712_100032743 75Ga0222712_102435632 76Ga0222712_102987412 77Ga0214919_100890563 78Ga0244775_105682652 79Ga0244775_109448811 80Ga0208916_101201762 81Ga0255110_10626212 82Ga0255104_10304151 83Ga0208164_10493792 84Ga0255109_11020142 85Ga0208966_10041895 86Ga0208966_10263733 87Ga0208951_100000912 88Ga0208951_10009378 89Ga0208942_10009809 90Ga0209617_100015388 91Ga0209297_100097316 92Ga0209297_10029333 93Ga0209190_100018019 94Ga0209355_10080983 95Ga0209597_10303462 96Ga0209596_10076866 97Ga0209444_100051346 98Ga0209296_11114262 99Ga0209134_100005324 100Ga0209134_100008332 101Ga0209134_100011946 102Ga0209134_100161324 103Ga0209134_101134983 104Ga0209134_101274022 105Ga0209134_101910981 106Ga0209246_102523852 107Ga0209107_101763062 108Ga0209107_102251882 109Ga0209107_103820361 110Ga0209353_100401192 111Ga0209353_101307903 112Ga0209353_102428632 113Ga0209354_100040982 114Ga0209354_100041796 115Ga0209298_1000046125 116Ga0209298_103022541 117Ga0335061_0303349_680_826
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. 1JGI12547J11936_10032906 2JGI12421J11937_100169892 3GOS2228_10289451 4JGI25913J50563_10553951 5Ga0075458_100755152 6Ga0114980_102565682 7Ga0114974_102574491 8Ga0214206_100005831 9Ga0244775_109448811
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48 1Ga0114980_103356782 2JGI12547J11936_10032906 3JGI12421J11937_100169892 4JGI25913J50563_10012154 5JGI25913J50563_10079062 6JGI25913J50563_10396431 7Ga0049083_100156974 8Ga0049084_101207032 9Ga0049084_101341892 10Ga0075458_100755152 11Ga0105746_12735712 12Ga0114980_101306402 13Ga0114980_106983792 14Ga0114981_1000130113 15Ga0129318_101180932 16Ga0139557_10640032 17Ga0211734_108357264 18Ga0214206_100005831 19Ga0244775_109448811 20Ga0209297_100097316 21Ga0209444_100051346 22Ga0209134_100011946 23Ga0335061_0303349_680_826
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 22.37% β-sheet: 0.00% Coil/Unstructured: 77.63%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF02472	ExbD	46.15
PF00291	PALP	19.66
PF14821	Thr_synth_N	9.40
PF01618	MotA_ExbB	6.84
PF08544	GHMP_kinases_C	1.71
PF04055	Radical_SAM	1.71
PF08241	Methyltransf_11	0.85
PF04166	PdxA	0.85
PF02424	ApbE	0.85
PF00795	CN_hydrolase	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0848	Biopolymer transport protein ExbD	Intracellular trafficking, secretion, and vesicular transport [U]	46.15
COG0036	Pentose-5-phosphate-3-epimerase	Carbohydrate transport and metabolism [G]	0.85
COG0166	Glucose-6-phosphate isomerase	Carbohydrate transport and metabolism [G]	0.85
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.85
COG1477	FAD:protein FMN transferase ApbE	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG1995	4-hydroxy-L-threonine phosphate dehydrogenase PdxA	Coenzyme transport and metabolism [H]	0.85

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.44 %
Unclassified	root	N/A	2.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.44 %
Unclassified	root	N/A	2.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.44 %
Unclassified	root	N/A	2.56 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	76.07 %
Unclassified	root	N/A	2.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	2.56 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	76.07 %

Name	Rank	Taxonomy	Distribution
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1.71 %
Unclassified	root	N/A	2.56 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.85 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	26.50 %

Name	Rank	Taxonomy	Distribution
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	1.71 %
Unclassified	root	N/A	2.56 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.85 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	24.79 %

Name	Rank	Taxonomy	Distribution
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	1.71 %
Unclassified	root	N/A	2.56 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.85 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	21.37 %

Name	Rank	Taxonomy	Distribution
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	1.71 %
Prosthecobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter	6.84 %
Unclassified	root	N/A	2.56 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.85 %
Verrucomicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium	7.69 %

Name	Rank	Taxonomy	Distribution
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	1.71 %
Prosthecobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter	6.84 %
Unclassified	root	N/A	2.56 %
unclassified Verrucomicrobium	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium	1.71 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.85 %
Verrucomicrobium spinosum	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	5.13 %

Name	Rank	Taxonomy	Distribution
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	1.71 %
Prosthecobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter	6.84 %
Unclassified	root	N/A	2.56 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.85 %
Verrucomicrobium sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp.	1.71 %
Verrucomicrobium spinosum	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	5.13 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000736\|JGI12547J11936_1003290	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	4504	Open in IMG/M
3300000756\|JGI12421J11937_10016989	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	2724	Open in IMG/M
3300000756\|JGI12421J11937_10029130	All Organisms → cellular organisms → Bacteria	1987	Open in IMG/M
3300000756\|JGI12421J11937_10059609	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300001948\|GOS2228_1028945	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	1576	Open in IMG/M
3300002138\|M3t6FKB1_1773435	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	7264	Open in IMG/M
3300003277\|JGI25908J49247_10091528	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300003388\|JGI25910J50241_10000276	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	16634	Open in IMG/M
3300003394\|JGI25907J50239_1009839	All Organisms → cellular organisms → Bacteria	2251	Open in IMG/M
3300003412\|JGI25912J50252_10086607	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	776	Open in IMG/M

Showing 1 to 10 of 116 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	82.05%
Marine	Environmental → Aquatic → Marine	17.09%
Unclassified	Environmental → Aquatic → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	5.98%
Ice	Environmental → Aquatic → Freshwater → Ice	0.85%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	6.84%
Lake	Environmental → Aquatic → Freshwater → Lake	33.33%
Lentic	Environmental → Aquatic → Freshwater → Lentic	45.30%
River	Environmental → Aquatic → Freshwater → River	2.56%
Unclassified	Environmental → Aquatic → Marine → Unclassified	4.27%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.56%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	5.98%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	5.13%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	37.61%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	33.33%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.98%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	4.27%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	1.71%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	3.42%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	5.98%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	1.71%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.56%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.84%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	2.56%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.71%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	0.85%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	5.13%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment	1.71%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	27.35%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	23.08%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	10.26%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.71%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.85%
Marine	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine	0.85%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000736	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011	Environmental	Open in IMG/M
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300001948	Marine microbial communities from Chesapeake Bay, Maryland, USA - GS012	Environmental	Open in IMG/M
3300002138	M3t6FKB1 (102f)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003388	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN	Environmental	Open in IMG/M
3300003394	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN	Environmental	Open in IMG/M
3300003412	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD	Environmental	Open in IMG/M
3300003431	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN	Environmental	Open in IMG/M
3300003497	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN	Environmental	Open in IMG/M

Showing 1 to 10 of 70 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12547J11936_10032906	3300000736	Freshwater And Sediment	MLRTMKTALLAVLALALPTLTGCIVVIEQAPAEKATPAKKASTKPAATSAEK*
JGI12421J11937_100169892	3300000756	Freshwater And Sediment	MLPCMKTFLVATLALASLTLSGCIIVIEQAPAEKAAPVKKTAAKPNPDSSSK*
JGI12421J11937_100291302	3300000756	Freshwater And Sediment	MLPEMKNALLATLALASLALSGCIIVIEQAPAEKATPAKKAAAKPNADGSSK*
JGI12421J11937_100596092	3300000756	Freshwater And Sediment	MLPDMKTALVATLALACLTLSGCIIVIEQAPAEKAAPAKKAAAKPNPDSASK*
GOS2228_10289451	3300001948	Marine	MLGRMKTFLVATLALACLALSGCIIVIEQAPAEKAAPAKKAAAK
M3t6FKB1_17734357	3300002138	Marine	MLPDMKTALVATLALASLTLSGCIIVIEQAPAAKAAPAKKAAAKPNPDSASK*
JGI25908J49247_100915281	3300003277	Freshwater Lake	FLVATLALASLALSGCIIVIEQAPAEKAAPAKKTAAKPNPDGSSK*
JGI25910J50241_1000027612	3300003388	Freshwater Lake	MLPGMKTFLVATLALASLALSGCIIVIEQAPAEKAAPAKKTAAKPNPDGSSK*
JGI25907J50239_10098392	3300003394	Freshwater Lake	MLADMKNALIATLALASLALSGCIIVIEQAPAEKAAPAKKVAAKPNPDGSSK*
JGI25912J50252_100866072	3300003412	Freshwater Lake	MLTDMKNALLATLALASLALSGCIIVIEQAPVEKATPAKKAAAKPNA
JGI25912J50252_101557042	3300003412	Freshwater Lake	MLRTMKTALLAVLALALPTLTGCIVVIEQAPAEKATPAKKAA
JGI25913J50563_10012154	3300003431	Freshwater Lake	MLRYMKIALIAVLALASLTLSGCIIVIEQAPTEKAAPVKKAGAKPAAGTSSK*
JGI25913J50563_10053242	3300003431	Freshwater Lake	MLPYMKTALVATLALASLTLSGCIIVIEQAPAEKAAPTKKAAAKPNPDSASK*
JGI25913J50563_10079062	3300003431	Freshwater Lake	MLADMKNALIATLALASLTLSGCIIVIEQAPAEKAAPAKKAAAKPNPDGSSK*
JGI25913J50563_10396431	3300003431	Freshwater Lake	MLVAMKTVLLAALALAALALSGCIIVIEQAPSEKAALAKKAAVKANPDSSSK*
JGI25913J50563_10553951	3300003431	Freshwater Lake	TLALASLALSGCIIVIEQAPAEKAAPAKKAATKPNPDSSSK*
JGI25913J50563_10585171	3300003431	Freshwater Lake	VALLAFTSLALSGCIIVIEQAPAEKAAPAKKAAKPNPDSSTK*
JGI25925J51416_100043094	3300003497	Freshwater Lake	MLPGMKTFLVATLALASLALSGCIIVIEQAPVEKAAPAKKAAAKPNPDGSSK*
JGI25925J51416_100812581	3300003497	Freshwater Lake	MLPEMKNALLATLALASLALSGCIIVIEQAPAEKATPAKKAVAKP
Ga0066179_100023801	3300004126	Freshwater Lake	MLPGMKTFLVATLALASLALSGCIIVIEQAPAEKAAPAKKTAAK
Ga0007759_103004951	3300004836	Freshwater Lake	FTKPASRAMLPGMKTFLVATLALASLALSGCIIVIEQAPAEKAAPAKKTAAKPNPDGSSK
Ga0007759_115495691	3300004836	Freshwater Lake	ATLALASLALSGCIIVIEQAPAEKATPAKKAVAKPNADGASK*
Ga0070374_101391684	3300005517	Freshwater Lake	MLPGMKTFLVATLALASLALSGCIIVIEQAPAEKAAPAKKTA
Ga0049083_100011886	3300005580	Freshwater Lentic	MLRTMKTALLAVLALALPTLTGCIVVIEQAPAEKATPAKKAATKPAATSAEK*
Ga0049083_100099863	3300005580	Freshwater Lentic	MKTVIVATLALTCLALSGCIIVIEQAPAEKAAPAKKAAAKPNPDSSSK*
Ga0049083_100156974	3300005580	Freshwater Lentic	MLRHMKIALVALLALTSLALSGCIIVIEQAPAEKVAPAKKAAAKPSPDSTKK*
Ga0049085_1000042018	3300005583	Freshwater Lentic	MLPGMKTFLVATLALASLALSGCIIVIEQAPVEKAAPAKKAAAKPNPDGPSK*
Ga0049084_101207032	3300005585	Freshwater Lentic	MLPDMKTALAAALALASLTLSGCIIVIEQAPAEKATPAKKAAAKPNPDSASK*
Ga0049084_101341892	3300005585	Freshwater Lentic	MKTVIVATLALTCLALSGCFIVIEPAPAEKAAPAKKAAAKPNPDSSSK*
Ga0049084_102692822	3300005585	Freshwater Lentic	FTKPASRAMLPGMKTFLVATLALASLALSGCIIVIEQAPVEKAAPAKKAAAKPNPDGPSK
Ga0075464_100852632	3300006805	Aqueous	MNSMKTYLVATLALACLALSGCIIVIEQAPAEKAAPAKKASKPAADSSSK*
Ga0075464_104292752	3300006805	Aqueous	MLHPMKTVLVATLALATLALSGCIIVIEQAPSEKVAAAKKAAAAKPATDSSSK*
Ga0075458_100755152	3300007363	Aqueous	MKTVLVAMLALAGLALSGCVIVIERAPAEPAAPAKKAAAKPNPDSASK*
Ga0102873_11896962	3300007545	Estuarine	MKTFLVATLALASLTLSGCIIVIEQAPAEKAAPVKKTAAKPNPDSSSK*
Ga0102877_11114942	3300007548	Estuarine	MKTFLVATLALASLTLSGCIIVIEQAPAEKAAPVKKTAAKPNPDSSPK*
Ga0102817_11274122	3300007555	Estuarine	MLPEMKNALLATLALASLALSGCIIVIEQAPAEKATPAKKAVAKPNADGSSK*
Ga0102828_10091683	3300007559	Estuarine	MLPYMKTVLVASLALASLALSGCIIVIEQAPAEKAAPAKKAVAKPNPDSASK*
Ga0102865_11517821	3300007639	Estuarine	MKTVLVATLALVTLALSGCIIVSEQAPAEKAAPAKKAAAKPNPDSTSK*
Ga0105746_12735712	3300007973	Estuary Water	MLAAMKTVLVATLALVTLALSGCIIVIEQAPAEKAAPVKKTAAKPNPDSSPK*
Ga0102831_11993752	3300008996	Estuarine	MLAAMKTVLVATLALVTLALSGCIIVIEPAPAEKAAPAKKAAAKPNPDSTSK*
Ga0114980_1000157313	3300009152	Freshwater Lake	MKTFLVATLALAGLALSGCIIVIEQAPAEKAAPAKKAATKPNPDSSSK*
Ga0114980_100508983	3300009152	Freshwater Lake	MKTFLVATLALACLALSGCIIVIEQAPAEKAAPAKKAATKPAVDSSSK*
Ga0114980_101306402	3300009152	Freshwater Lake	MIPPMKIVYVASLVLASLALSGCIIVIEQAPVEKAATAKKAAAKPNPDSASK*
Ga0114980_102565682	3300009152	Freshwater Lake	MKTALVAALVLATLALSGCIIVIEQAPSEKAALAKKSATKPDPDSSSK*
Ga0114980_103356782	3300009152	Freshwater Lake	MKTVLVATLALASLALSGCIIVIEQAPAEKAAPAKKAAAKPNPDSASK*
Ga0114980_106983792	3300009152	Freshwater Lake	MKTFLVATLTLTCLALSGCIIVIEQAPGEKAAQAQKAAAKPNPDSAAK*
Ga0114978_1000036217	3300009159	Freshwater Lake	MLRHVKIALVALLAFTSLALSGCIIVIEQAPAEKAAPAKKAAKPNPDSSTK*
Ga0114978_100208033	3300009159	Freshwater Lake	MPADHPMLGCMKTFLVATLALACLALSGCIIVIEQAPAEKAAPAKKAPAKPNPDSSSK*
Ga0114978_102444231	3300009159	Freshwater Lake	MKIVYVASLVLASLALSGCIIVIEQAPVEKAATAKKAAAKPNPDSASK*
Ga0114978_102960052	3300009159	Freshwater Lake	LPVMKTALVAALVLATLALSGCIIVIEQAPSEKAALAKKSATKPDPDSSSK*
Ga0114981_1000130113	3300009160	Freshwater Lake	LFCAFAKRDGHPMLPVMKTALVAALVLATLALSGCIIVIEQAPSEKAALAKKSATKPDPDSSSK*
Ga0114969_100645354	3300009181	Freshwater Lake	MPADHPILGCMKTFLVATLALACLALSGCIIVIEQAPAEKAAPAKKAPAKPNPDSSSK*
Ga0114969_101586352	3300009181	Freshwater Lake	MKTVLVASLALASLALSGCIIVIEQAPAEKAAPAKKAAAKPNPDSASK*
Ga0114974_102574491	3300009183	Freshwater Lake	MKIVYVASLVLASLALSGCIIVIEQAPVEKAATAKKAAAKPNP
Ga0114974_106106171	3300009183	Freshwater Lake	VYVASLVLASLALSGCIIVIEQAPVEKAATAKKAAAKPNPDSASK*
Ga0133913_107055344	3300010885	Freshwater Lake	MKTFLVATLALAGLALSGCFIVIEQAPAEKAAPAKKAATKPNPDSSSK*
Ga0133913_134115642	3300010885	Freshwater Lake	MKTALVAALALTSLALSGCIIVIEQAPSEKAALAKKSATKPNPDSSSK*
Ga0129318_101180932	3300011009	Freshwater To Marine Saline Gradient	MKTVLVATLALATLALSGCIIVIEQAPSEKVAAAKKAAAAKPATDSSSK*
Ga0129318_101182152	3300011009	Freshwater To Marine Saline Gradient	MKTFLVATLALACLALSGCVIVIEQAPAEKAAPAKKASKPAADSSSK*
Ga0139557_10640032	3300011010	Freshwater	MLPGMKTFLVATLALASLALSGCIIVIEQAPVEKAAPAKRAAAKPNPDGSSK*
Ga0139556_10015094	3300011011	Freshwater	ALTSLALSGCIIVIEQAPAEKVAPAKKAAAKPSPDSTKK*
Ga0139556_10382522	3300011011	Freshwater	MKTFLVATLALASLALSGCIIVIEQAPVEKAAPAKKAASKPNPDGPSK*
Ga0138283_12039702	3300012774	Freshwater Lake	VASLVLASLALSGCIIVIEQAPVEKAATAKKAAAKPNPDSASK*
Ga0138280_11364201	3300012775	Freshwater Lake	YVASLVLASLALSGCIIVIEQAPVEKAATAKKAAAKPNPDSASK*
Ga0170791_134038592	3300013295	Freshwater	KTFLVGTLALAGLALSGCIIVIEQAPAEKAAPAKKAATKPNPDSSSK*
Ga0170791_134274894	3300013295	Freshwater	MPADHPMLGCMKTFLVATLALACLALSGCIIVIEQAPAEKAAPAKKAPAKPNPD
Ga0177922_100660832	3300013372	Freshwater	MKTFLVATLALASLALSGCIIVIEQAPVEKAAPAKKAAAKPNPDGSSK*
Ga0211736_107786778	3300020151	Freshwater	MLPDMKTALVATLALACLTLSGCIIVIEQAPAEKAAPAKKAAAKPNPDSASK
Ga0211734_108357264	3300020159	Freshwater	MLPDMKIVIVATLALTSLALSGCIIVIEQAPAEKAAPAKKAVAKPNPDSSSK
Ga0211731_102136205	3300020205	Freshwater	MLPDMKIVIVATLALTSLALSGCIIVIEQAPAEKAAPAKKAAAKPNSDSSSK
Ga0214206_100005831	3300021131	Freshwater	MKNVLLATIALACLALSGCIIVIEQAPAVKAPAADQAAPIKKTAAKPNPDSSSK
Ga0194048_1000039114	3300021519	Anoxic Zone Freshwater	MLGCMKTFLVATLALACLALSGCIIVIEQAPAEKAAPAKKAPAKPNPDSSSK
Ga0194053_104148371	3300021520	Anoxic Zone Freshwater	MLVRMKTVLLATLALACLALSGCIIVIEQAPAEKAAPAKKAAAKPNPD
Ga0222712_100032743	3300021963	Estuarine Water	MLAAMKTVLVATLALVTLALSGCIIVIEQAPAEKAAPAKKAAAKPNPDSTSK
Ga0222712_102435632	3300021963	Estuarine Water	MLADMKNALLATLALASLALSGCIIVIEQAPAEKAAPAKKAAAKPNPDSSSK
Ga0222712_102987412	3300021963	Estuarine Water	MKTFLVATLALACLALSGCVIVIEQAPVEKAAPAKKAAKPAADSSSK
Ga0214919_100890563	3300023184	Freshwater	MLVRMKTVLLATLALACLALSGCIIVIEQAPAEKAAPAKKAASKPNPDSSSK
Ga0244775_105682652	3300024346	Estuarine	MLPYMKTVLVASLALASLALSGCIIVIEQAPAEKAAPAKKAVAKPNPDSASK
Ga0244775_109448811	3300024346	Estuarine	AKPAGYPMLPEMKNALLATLALASLALSGCIIVIEQAPAEKAAPAKKAAAKPNPESTSK
Ga0208916_101201762	3300025896	Aqueous	MKTFLVATLALACLALSGCVIVIEQAPAEKAAPAKKASKPAADSSSK
Ga0255110_10626212	3300027132	Freshwater	MKTALAAALALASLTLSGCIIVIEQAPAEKATPAKKAAAKPNPDSASK
Ga0255104_10304151	3300027146	Freshwater	MLPDMKTALAAALALASLTLSGCIIVIEQAPAEKATPAKKAAAKPNPDSASK
Ga0208164_10493792	3300027224	Estuarine	MLPCMKTFLVATLALASLTLSGCIIVIEQAPAEKAAPVKKTAAKPNPDSSPK
Ga0255109_11020142	3300027329	Freshwater	DMKTALAAALALASLTLSGCIIVIEQAPAEKATPAKKAAAKPNPDSASK
Ga0208966_10041895	3300027586	Freshwater Lentic	MLPGMKTFLVATLALASLALSGCIIVIEQAPAEKAAPAKKTAAKPNPDGSSK
Ga0208966_10263733	3300027586	Freshwater Lentic	MLRHMKIALVALLALTSLALSGCIIVIEQAPAEKVAPAKKAAAKPSPDSTKK
Ga0208951_100000912	3300027621	Freshwater Lentic	MLRTMKTALLAVLALALPTLTGCIVVIEQAPAEKATPAKKAATKPAATSAEK
Ga0208951_10009378	3300027621	Freshwater Lentic	MKTVIVATLALTCLALSGCIIVIEQAPAEKAAPAKKAAAKPNPDSSSK
Ga0208942_10009809	3300027627	Freshwater Lentic	MLPGMKTFLVATLALASLALSGCIIVIEQAPVEKAAPAKKAAAKPNPDGPSK
Ga0209617_100015388	3300027720	Freshwater And Sediment	MLRTMKTALLAVLALALPTLTGCIVVIEQAPAEKATPAKKASTKPAATSAEK
Ga0209297_100097316	3300027733	Freshwater Lake	MKTFLVATLALACLALSGCIIVIEQAPAEKAAPAKKAATKPAVDSSSK
Ga0209297_10029333	3300027733	Freshwater Lake	MIPPMKIVYVASLVLASLALSGCIIVIEQAPVEKAATAKKAAAKPNPDSASK
Ga0209190_100018019	3300027736	Freshwater Lake	MLTCMKTFLVATLALAGLALSGCIIVIEQAPAEKAAPAKKAATKPNPDSSSK
Ga0209355_10080983	3300027744	Freshwater Lake	MKTVIVATLALACLALSGCIIVIEQAPAEKAAPAKKAAAKPNPDSSSK
Ga0209597_10303462	3300027746	Freshwater Lake	MPADHPMLGCMKTFLVATLALACLALSGCIIVIEQAPAEKAAPAKKAPAKPNPDSSSK
Ga0209596_10076866	3300027754	Freshwater Lake	MLHCMKTVLVATLALASLALSGCIIVIEQAPAEKAAPAKKAAAKPNPDSASK
Ga0209444_100051346	3300027756	Freshwater Lake	MLPEMKNALLATLALASLALSGCIIVIEQAPAEKATPAKKAVAKPNADGASK
Ga0209296_11114262	3300027759	Freshwater Lake	MLRHVKIALVALLAFTSLALSGCIIVIEQAPAEKAAPAKKAAKPNPDSSTK
Ga0209134_100005324	3300027764	Freshwater Lake	MLRYMKIALIAVLALASLTLSGCIIVIEQAPTEKAAPVKKAGAKPAAGTSSK
Ga0209134_100008332	3300027764	Freshwater Lake	MLPYMKTALVATLALASLTLSGCIIVIEQAPAEKAAPTKKAAAKPNPDSASK
Ga0209134_100011946	3300027764	Freshwater Lake	MLRHMKIALVALLAFTSLALSGCIIVIEQAPAEKAAPAKKAAKPNPDSSTK
Ga0209134_100161324	3300027764	Freshwater Lake	MLADMKNALIATLALASLALSGCIIVIEQAPAEKAAPAKKVAAKPNPDGSSK
Ga0209134_101134983	3300027764	Freshwater Lake	MLPDMKNVLIATLALASLALSGCIIVIEQAPAEKATPAKKAAAKPN
Ga0209134_101274022	3300027764	Freshwater Lake	MLVAMKTVLLAALALAALALSGCIIVIEQAPSEKAALAKKAAVKANPDSSSK
Ga0209134_101910981	3300027764	Freshwater Lake	LIATLALASLALSGCIIVIEQAPAEKATPAKKAAAKPNADGSSK
Ga0209246_102523852	3300027785	Freshwater Lake	MLRTMKTALLAVLALALPTLTGCIVVIEQAPAEKATPAKKAATKPAA
Ga0209107_101763062	3300027797	Freshwater And Sediment	MLPDMKNALIATLALASLTLSGCIIVIEQAPAEKTASVKKTAAKPNPDSSSK
Ga0209107_102251882	3300027797	Freshwater And Sediment	PMLRTMKTALLAVLALALPTLTGCIVVIEQAPAEKATPAKKASTKPAATSAEK
Ga0209107_103820361	3300027797	Freshwater And Sediment	ANLVATLALACLTLSGCIIVIEQAPAEKAAPAKKAAAKPNPDSASK
Ga0209353_100401192	3300027798	Freshwater Lake	MLPDMKTALVASLALASLTLSGCIIVIEQAPAEKAAPAKKAAAKPNPDSASK
Ga0209353_101307903	3300027798	Freshwater Lake	MLPYMKTALVATLALASLTLSGCIIVIEQAPAEKAAPTKKAAAKPNP
Ga0209353_102428632	3300027798	Freshwater Lake	MLPEMKNALLATLALASLALSGCIIVIEQAPVEKATPAKKAAAKPNADGSSK
Ga0209354_100040982	3300027808	Freshwater Lake	MLHYMKIALIAVLALASLTLSGCIIVIEQAPTEKAAPVKKAGAKPAAGTSSK
Ga0209354_100041796	3300027808	Freshwater Lake	MLPCMKTALVATLALASLTLSGCIIVIEQAPAEKAAPTKKAAAKPNPDSASK
Ga0209298_1000046125	3300027973	Freshwater Lake	MLPVMKTALVAALVLATLALSGCIIVIEQAPSEKAALAKKSATKPDPDSSSK
Ga0209298_103022541	3300027973	Freshwater Lake	MLPRMKTFLVATLTLTCLALSGCIIVIEQAPGEKAAQAQKAAAKPNPDSAAK
Ga0335061_0303349_680_826	3300034168	Freshwater	MKNALIATLALASLTLSGCIIVIEQAPAEKTASVKKTAAKPNPDSSSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077014

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences