Metagenome Family F076935

Basic Information
Family ID	F076935
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	64 residues
Representative Sequence	VEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Number of Associated Samples	80
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (99.145 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.385 % of family members)
Environment Ontology (ENVO)	Unclassified (23.932 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (30.769 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 87.30% β-sheet: 0.00% Coil/Unstructured: 12.70%
Feature Viewer

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Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF16927	HisKA_7TM	58.12
PF00702	Hydrolase	7.69
PF03807	F420_oxidored	1.71
PF02817	E3_binding	0.85
PF07992	Pyr_redox_2	0.85
PF06081	ArAE_1	0.85
PF02776	TPP_enzyme_N	0.85
PF10009	DUF2252	0.85
PF00211	Guanylate_cyc	0.85
PF01625	PMSR	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG0508	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component	Energy production and conversion [C]	0.85
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.85
COG4129	Uncharacterized membrane protein YgaE, UPF0421/DUF939 family	Function unknown [S]	0.85

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.15 %
All Organisms	root	All Organisms	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.15 %
cellular organisms	root	All Organisms → cellular organisms	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.15 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.15 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.15 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.15 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.85 %

Scaffold	Taxonomy	Length	IMG/M Link
3300009789\|Ga0126307_10008906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7224	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.27%
Host-Associated	Host-Associated	42.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.43%
Plants	Host-Associated → Plants	42.73%
Aquatic	Environmental → Aquatic	6.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.22%
Sediment	Environmental → Aquatic → Sediment	6.84%
Roots	Host-Associated → Plants → Roots	6.84%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.13%
Phyllosphere	Host-Associated → Plants → Phyllosphere	4.27%
Phylloplane	Host-Associated → Plants → Phylloplane	4.27%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.84%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	6.84%
Loam	Environmental → Terrestrial → Soil → Loam	4.27%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	4.27%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	4.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.42%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.84%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	6.84%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.27%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	4.27%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	4.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.42%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.56%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.71%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	1.71%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.38%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	14.53%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	14.53%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	6.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.13%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.27%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	4.27%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	4.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.56%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.56%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	1.71%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.71%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011422	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT640_2	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300026652	Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1117 (SPAdes)	Environmental	Open in IMG/M
3300026704	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN606 (SPAdes)	Environmental	Open in IMG/M
3300026790	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN607 (SPAdes)	Environmental	Open in IMG/M
3300026791	Grasslands soil microbial communities from Kansas, USA that are Nitrogen fertilized - NN591 (SPAdes)	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030499	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034131	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 7HMS	Environmental	Open in IMG/M
3300034174	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25406J46586_101986512	3300003203	Tabebuia Heterophylla Rhizosphere	RRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
JGI25407J50210_100154152	3300003373	Tabebuia Heterophylla Rhizosphere	VEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
JGI25407J50210_100695111	3300003373	Tabebuia Heterophylla Rhizosphere	AQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
JGI25407J50210_101164392	3300003373	Tabebuia Heterophylla Rhizosphere	QLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0058689_100687161	3300004016	Agave	VALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0058689_100845711	3300004016	Agave	VEAQVQLSTAMRQLLVALDQADAGDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0062595_1007161722	3300004479	Soil	LLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0058697_103493461	3300005562	Agave	PAVADRRRSRRLWGLGVEAQVQLSTAMRQLLAALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0058697_105196792	3300005562	Agave	PVPPPPGVADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADTRLLLARAIGDIQMVLGELADLNDQLRAR*
Ga0058697_108045002	3300005562	Agave	AMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0068862_1019115971	3300005844	Switchgrass Rhizosphere	ADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0081455_100686413	3300005937	Tabebuia Heterophylla Rhizosphere	VQLGTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLAELADLNDQLRAR*
Ga0081538_1000148924	3300005981	Tabebuia Heterophylla Rhizosphere	VQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0081538_100066083	3300005981	Tabebuia Heterophylla Rhizosphere	VPPPAPPLPGVADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLAELADLNDQLRAR*
Ga0081538_100488892	3300005981	Tabebuia Heterophylla Rhizosphere	MRQLLVALDQADAGDSEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0081538_101493872	3300005981	Tabebuia Heterophylla Rhizosphere	SRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQVVLGELADLNDQLRAR*
Ga0081538_103623872	3300005981	Tabebuia Heterophylla Rhizosphere	MRQLLIALDQADADEPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRVR*
Ga0081539_101259502	3300005985	Tabebuia Heterophylla Rhizosphere	MQHRLRPVAVAPPAPPPSGAADRRRSRRLWGLGVEAQVQLGMAMRQLLVALDQADTDDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0075417_105323941	3300006049	Populus Rhizosphere	MQRRLRPVAVPSPVSPPPGVADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQTVLDELTDLNDQLRAR*
Ga0075417_106181151	3300006049	Populus Rhizosphere	VALDQADTDDPEAHEAIADARLLLAGAIGDIEAVLGELADLNDRLRAR*
Ga0079218_117813542	3300007004	Agricultural Soil	VEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQVVLGELADLNDQLRAR*
Ga0111539_109277522	3300009094	Populus Rhizosphere	VEAQVQLGMAMRQLLVALDQADTDDPEAHEAIADARLLLAGAIGDIEAVLGELADLNDRLRAR*
Ga0075418_104032922	3300009100	Populus Rhizosphere	VADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQTVLDELTDLNDQLRAR*
Ga0114129_108423092	3300009147	Populus Rhizosphere	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0114129_115470041	3300009147	Populus Rhizosphere	VEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLAGAIGDIQAVLGELADLNDQLRAR*
Ga0111538_101408322	3300009156	Populus Rhizosphere	VEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQTVLDELTDLNDQLRAR*
Ga0126307_100089062	3300009789	Serpentine Soil	MRQPLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0126313_100097504	3300009840	Serpentine Soil	MRQLLVALDQADAGDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0126313_100472722	3300009840	Serpentine Soil	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQVVLGELADLNDQLRAR*
Ga0126313_101244651	3300009840	Serpentine Soil	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLAELADLNDQLRAR*
Ga0126313_108475701	3300009840	Serpentine Soil	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAV
Ga0126305_106205971	3300010036	Serpentine Soil	EAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0126315_100911192	3300010038	Serpentine Soil	MRQLLVALDQADAGDPEAHEAIADTRLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0126315_108273401	3300010038	Serpentine Soil	AMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLAELADLNDQLRAR*
Ga0126312_107652222	3300010041	Serpentine Soil	QVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0126312_113958551	3300010041	Serpentine Soil	MRQLLVALDQADADDPEAHEAIADARLLLARAIGD
Ga0126314_103858891	3300010042	Serpentine Soil	QLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLAELADLNDQLRAR*
Ga0126314_107215011	3300010042	Serpentine Soil	LVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0126310_103808012	3300010044	Serpentine Soil	SRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0126311_112923761	3300010045	Serpentine Soil	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAH*
Ga0126311_118353611	3300010045	Serpentine Soil	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVL
Ga0126306_100047422	3300010166	Serpentine Soil	VEAQVQLSTAMRQPLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0126306_100365993	3300010166	Serpentine Soil	GLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLAELADLNDQLRAR*
Ga0126377_104397452	3300010362	Tropical Forest Soil	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLDELGDLNDQLRVR*
Ga0105239_130227352	3300010375	Corn Rhizosphere	RRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0134123_128483592	3300010403	Terrestrial Soil	DRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0137425_10780511	3300011422	Soil	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLR
Ga0137376_108470922	3300012208	Vadose Zone Soil	VEAQVQLSTAMGQLLVALDQADAGDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0162650_1000140471	3300012939	Soil	WGLGVEAQVQLSMAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0162652_1000223782	3300012941	Soil	MRQLLVALDQADADDPEAHEAIADARLLLARAISDIQAVLGELADLNDQLRAR*
Ga0182000_100073511	3300014487	Soil	VEAQVQLSTAMRQLLAALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRA
Ga0182000_100251031	3300014487	Soil	VEAQVQLSTAMRQLLVALDQADVGDPEAQEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0182000_101214532	3300014487	Soil	MRQLLAALDQADADDPEAHEAIADARLLLARAIGDIQVVLGELADLNDQLRAR*
Ga0182000_103174321	3300014487	Soil	MRQLLVALDQADADDPEAHEAIADTRLLLARAIGDIQMVLGELADLNDQLRAR*
Ga0182000_105105871	3300014487	Soil	GVGGRLHSRRLWGLGVEAQVQLSTAMRQLLAALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0182005_11661611	3300015265	Rhizosphere	MGQLQVALDQADAGDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR*
Ga0132258_106035092	3300015371	Arabidopsis Rhizosphere	VEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLND
Ga0132255_1001680412	3300015374	Arabidopsis Rhizosphere	VEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDHLRAR*
Ga0184604_100285001	3300018000	Groundwater Sediment	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0184604_100387232	3300018000	Groundwater Sediment	VPPPPGVADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0184623_100599172	3300018056	Groundwater Sediment	MQRRLRSVTVPSPIQPPPPGVADRRRSRRLWGLGLEAQVQLGTAMRQLLVALDQADADDPEAHEAIADGRLLLARAIGDIQAVLGELADLSDQLRAR
Ga0184617_10133752	3300018066	Groundwater Sediment	MRQLLVALDQADADDPEAHEAIADARLLLARAISDIQAVLGELADLNDQLRAR
Ga0184624_104880672	3300018073	Groundwater Sediment	LWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0184609_100041093	3300018076	Groundwater Sediment	MQRRLRSVTVPSPIQPPPPGVADRRRSRRIWGLGLEAQVQLGTAMRQLLVALDQADADDPEAHEAIADGRLLLARAIGDIQAVLGELADLSDQLRAR
Ga0190269_105050071	3300018465	Soil	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVVGELADL
Ga0190269_106153202	3300018465	Soil	RRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQVVLGELADLNDQLRAR
Ga0190268_108684662	3300018466	Soil	PPAAGSPEGLILRHLAAFDRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARSIGDIQAVLAELADLNDQLRAR
Ga0190268_119153342	3300018466	Soil	RRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0190264_107928132	3300019377	Soil	PPPPGVADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0190267_113408681	3300019767	Soil	GVADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLEELADLNDQLRAR
Ga0193705_10755891	3300019869	Soil	QVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLAELADLNDQLRAR
Ga0193700_10693051	3300019873	Soil	QLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0193696_11060742	3300020016	Soil	AMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0182009_106244061	3300021445	Soil	MGQLLVALDQADAGDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0222622_108664221	3300022756	Groundwater Sediment	RSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0208713_1003692	3300026652	Soil	VEAQVQLSTAMRQLLVALDQADAGDPEAHEAIADARLLLARAIGDIQAVVGELADLNDQLRAR
Ga0208581_1011031	3300026704	Soil	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLSELADLNDQLRAR
Ga0208710_1014911	3300026790	Soil	VEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLAGAIGDIQAVLGELADLNDQLRAR
Ga0208710_1048191	3300026790	Soil	VEAQVQLSTAMRQLLVALDQADAGDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0208072_1067192	3300026791	Soil	VEAQVQLSTAMGQLLVALDQADAGDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0209461_100233651	3300027750	Agave	VEAQVQLSTAMRQLLAALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0209461_100733062	3300027750	Agave	MRQLLVALDQADADDPEAHEAIADTRLLLARAIGDIQVVLGELADLNDQLRAR
Ga0209574_100943321	3300027809	Agave	VEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0307309_100260261	3300028714	Soil	RRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0307298_100125502	3300028717	Soil	EAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0307307_101688041	3300028718	Soil	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLAELADLNDQLRAR
Ga0307318_101726181	3300028744	Soil	PGVADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0307318_102141432	3300028744	Soil	ADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0247824_100910402	3300028809	Soil	PSPQSRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0307292_100922581	3300028811	Soil	TAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0307302_100485501	3300028814	Soil	LSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0307312_101820732	3300028828	Soil	PPPVSPPPGVADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0307277_103033851	3300028881	Soil	VAVPPPLPPPGVADRRRSRRLWGLGVEAQVQLSTAMGQLLVALDQADAGDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0268259_100909341	3300030499	Agave	DRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0268243_10095782	3300030510	Soil	VEAQVQLSTAMRQLLVALDQADAGDPEAHETIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0268255_102393611	3300030516	Agave	VAVPPPLPPPGVADRRRSRRLWGLGVEAQVQLSTAMRELLVALDQADAGDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0307413_100013532	3300031824	Rhizosphere	MRQLLVALDQADAGDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0307413_107931161	3300031824	Rhizosphere	RLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLAELADLNDQLRAR
Ga0307413_115906612	3300031824	Rhizosphere	PPPPGVADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELANLNDQLRAR
Ga0307406_109203732	3300031901	Rhizosphere	VTVPPRVPPPPGVADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQVVLGELADLNDQLRAR
Ga0307406_113412921	3300031901	Rhizosphere	VQLSTAMRQLLVALDQADADDPEAHEAIAVARLLLARAIGDIQAVLAELADLNDQLRAR
Ga0307407_100303522	3300031903	Rhizosphere	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQVVLGELADLNDQLRAR
Ga0307412_106544172	3300031911	Rhizosphere	QLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLAELADLNDQLRAR
Ga0308175_1016023511	3300031938	Soil	AMRQLLVALDQADAGDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0307409_1009344061	3300031995	Rhizosphere	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLSAR
Ga0307409_1017722822	3300031995	Rhizosphere	GVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0307416_1004678931	3300032002	Rhizosphere	LWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELANLNDQLRAR
Ga0307416_1007443512	3300032002	Rhizosphere	LVALDQADADDPEAHEAIAVARLLLARAIGDIQAVLAELADLNDQLRAR
Ga0307414_110456631	3300032004	Rhizosphere	LWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLAELADLNDQLRAR
Ga0307411_103510981	3300032005	Rhizosphere	QRRLRPVAIPQLVPPPPGVADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELANLNDQLRAR
Ga0307411_104220251	3300032005	Rhizosphere	VEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLAELADLNDQLRAR
Ga0307415_1004886241	3300032126	Rhizosphere	PGPPPPGVADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0307415_1007534381	3300032126	Rhizosphere	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDI
Ga0307415_1009530941	3300032126	Rhizosphere	MQHRLRPVAIPQPVPAPPGVADRRRSRRLWGLGVEAQVQLSTAMRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0247829_102174912	3300033550	Soil	MRQLLVALDQADADDPEAHEAIADARLLLARAIGDIQAVLGELAD
Ga0334911_055094_105_296	3300034131	Sub-Biocrust Soil	VEAQVQLSTAMRQLLVALDQADAGDPEAHEALADARLLLARAIGDIQAVLGELADLNDQLRAR
Ga0334932_009675_1296_1487	3300034174	Sub-Biocrust Soil	VEAQVQLSTAMRQLLVALDQADAGDSEAHEAIADARLLLARAIGDIQAVLGELADLNDQLRAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F076935

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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