Metagenome Family F076736

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076736
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	46 residues
Representative Sequence	MVRGIDNIGICATDLARSVAFYEALGFSEAYRNDRGVMMAAGTVQL
Number of Associated Samples	71
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.28 %
% of genes near scaffold ends (potentially truncated)	97.44 %
% of genes from short scaffolds (< 2000 bps)	91.45 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.214 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.316 % of family members)
Environment Ontology (ENVO)	Unclassified (70.085 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.829 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.51% β-sheet: 31.08% Coil/Unstructured: 55.41%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF08031	BBE	26.50
PF12833	HTH_18	9.40
PF14525	AraC_binding_2	8.55
PF04392	ABC_sub_bind	5.13
PF03466	LysR_substrate	3.42
PF02517	Rce1-like	2.56
PF01593	Amino_oxidase	1.71
PF00126	HTH_1	0.85
PF07366	SnoaL	0.85
PF04028	DUF374	0.85
PF13649	Methyltransf_25	0.85
PF00528	BPD_transp_1	0.85
PF00589	Phage_integrase	0.85
PF03992	ABM	0.85
PF13280	WYL	0.85
PF00583	Acetyltransf_1	0.85
PF05593	RHS_repeat	0.85
PF04299	FMN_bind_2	0.85
PF00106	adh_short	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	26.50
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	5.13
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	2.56
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	2.56
COG2121	Uncharacterized conserved protein, lysophospholipid acyltransferase (LPLAT) superfamily	Function unknown [S]	0.85
COG3209	Uncharacterized conserved protein RhaS, contains 28 RHS repeats	General function prediction only [R]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.21 %
Unclassified	root	N/A	24.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.21 %
Unclassified	root	N/A	24.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.21 %
Unclassified	root	N/A	24.79 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	53.85 %
Unclassified	root	N/A	24.79 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	2.56 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.71 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.15 %
Unclassified	root	N/A	24.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5.13 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	2.56 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.71 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.85 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	40.17 %
Unclassified	root	N/A	24.79 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	5.13 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	2.56 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.71 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.71 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.85 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.85 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.79 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	18.80 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	15.38 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	5.13 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	2.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.71 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.71 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.85 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.85 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.79 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	18.80 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	15.38 %
unclassified Steroidobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae	5.13 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	2.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.71 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.71 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.85 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	0.85 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.79 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	18.80 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	5.13 %
Nitrospira moscoviensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	2.56 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.71 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.71 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.85 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.85 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000700\|JGI12332J11870_102637	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300000711\|JGI12585J11927_103549	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300000862\|JGI12579J12822_104837	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300005332\|Ga0066388_100119238	All Organisms → cellular organisms → Bacteria	3156	Open in IMG/M
3300005332\|Ga0066388_102873815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	880	Open in IMG/M
3300005332\|Ga0066388_103283364	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300005764\|Ga0066903_101245289	Not Available	1385	Open in IMG/M
3300005764\|Ga0066903_106968552	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300009792\|Ga0126374_10235928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1184	Open in IMG/M
3300010043\|Ga0126380_10070894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1977	Open in IMG/M
3300010043\|Ga0126380_11461839	Not Available	603	Open in IMG/M
3300010046\|Ga0126384_11038523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	748	Open in IMG/M
3300010047\|Ga0126382_10000293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	18986	Open in IMG/M
3300010047\|Ga0126382_10539009	Not Available	947	Open in IMG/M
3300010362\|Ga0126377_11450990	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300010362\|Ga0126377_12125461	Not Available	638	Open in IMG/M
3300010366\|Ga0126379_11165079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	877	Open in IMG/M
3300010376\|Ga0126381_101588767	Not Available	945	Open in IMG/M
3300010376\|Ga0126381_102228810	Not Available	788	Open in IMG/M
3300010376\|Ga0126381_102815211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	694	Open in IMG/M
3300010376\|Ga0126381_104935876	Not Available	512	Open in IMG/M
3300010398\|Ga0126383_10763779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1048	Open in IMG/M
3300010868\|Ga0124844_1055466	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1409	Open in IMG/M
3300010868\|Ga0124844_1056122	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1403	Open in IMG/M
3300010868\|Ga0124844_1057095	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1394	Open in IMG/M
3300010868\|Ga0124844_1196639	Not Available	739	Open in IMG/M
3300012948\|Ga0126375_10074124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1922	Open in IMG/M
3300016294\|Ga0182041_10041280	All Organisms → cellular organisms → Bacteria	3050	Open in IMG/M
3300016294\|Ga0182041_10309690	All Organisms → cellular organisms → Bacteria → Proteobacteria	1312	Open in IMG/M
3300016294\|Ga0182041_10425004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1136	Open in IMG/M
3300016294\|Ga0182041_10628938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	946	Open in IMG/M
3300016294\|Ga0182041_11816565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	565	Open in IMG/M
3300016319\|Ga0182033_10130388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1908	Open in IMG/M
3300016319\|Ga0182033_10457702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1089	Open in IMG/M
3300016319\|Ga0182033_10469137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1076	Open in IMG/M
3300016319\|Ga0182033_10521277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1024	Open in IMG/M
3300016319\|Ga0182033_11220403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	674	Open in IMG/M
3300016341\|Ga0182035_10076123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2381	Open in IMG/M
3300016341\|Ga0182035_11310421	Not Available	649	Open in IMG/M
3300016357\|Ga0182032_10951881	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300016371\|Ga0182034_10128448	All Organisms → cellular organisms → Bacteria	1869	Open in IMG/M
3300016387\|Ga0182040_10542522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	935	Open in IMG/M
3300016387\|Ga0182040_11175668	Not Available	645	Open in IMG/M
3300016404\|Ga0182037_10569677	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300016422\|Ga0182039_10278707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1375	Open in IMG/M
3300016445\|Ga0182038_11494955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	606	Open in IMG/M
3300017822\|Ga0187802_10051091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1510	Open in IMG/M
3300019767\|Ga0190267_10834103	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	619	Open in IMG/M
3300020581\|Ga0210399_11532971	Not Available	516	Open in IMG/M
3300021560\|Ga0126371_11326999	Not Available	852	Open in IMG/M
3300021560\|Ga0126371_11350346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	845	Open in IMG/M
3300021560\|Ga0126371_11748609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	744	Open in IMG/M
3300026859\|Ga0207859_1016523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	643	Open in IMG/M
3300026983\|Ga0207856_1034493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	711	Open in IMG/M
3300031543\|Ga0318516_10059106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2105	Open in IMG/M
3300031545\|Ga0318541_10208988	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300031545\|Ga0318541_10773641	Not Available	536	Open in IMG/M
3300031546\|Ga0318538_10250703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	951	Open in IMG/M
3300031546\|Ga0318538_10534679	Not Available	636	Open in IMG/M
3300031564\|Ga0318573_10079850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1650	Open in IMG/M
3300031564\|Ga0318573_10335652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	810	Open in IMG/M
3300031564\|Ga0318573_10578969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	604	Open in IMG/M
3300031640\|Ga0318555_10564658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	617	Open in IMG/M
3300031719\|Ga0306917_10046851	Not Available	2886	Open in IMG/M
3300031719\|Ga0306917_10196666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1524	Open in IMG/M
3300031719\|Ga0306917_10280010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1284	Open in IMG/M
3300031719\|Ga0306917_10319948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1201	Open in IMG/M
3300031719\|Ga0306917_10402698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1068	Open in IMG/M
3300031724\|Ga0318500_10326496	Not Available	755	Open in IMG/M
3300031736\|Ga0318501_10113329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1365	Open in IMG/M
3300031736\|Ga0318501_10564147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	623	Open in IMG/M
3300031736\|Ga0318501_10646051	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300031744\|Ga0306918_10505615	Not Available	946	Open in IMG/M
3300031747\|Ga0318502_10236462	All Organisms → cellular organisms → Bacteria → Proteobacteria	1064	Open in IMG/M
3300031764\|Ga0318535_10305171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	712	Open in IMG/M
3300031768\|Ga0318509_10305034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	891	Open in IMG/M
3300031768\|Ga0318509_10610420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	607	Open in IMG/M
3300031770\|Ga0318521_10950067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	526	Open in IMG/M
3300031777\|Ga0318543_10441437	Not Available	583	Open in IMG/M
3300031779\|Ga0318566_10258001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	864	Open in IMG/M
3300031819\|Ga0318568_10997961	Not Available	517	Open in IMG/M
3300031833\|Ga0310917_10156524	All Organisms → cellular organisms → Bacteria	1507	Open in IMG/M
3300031879\|Ga0306919_10142184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1742	Open in IMG/M
3300031890\|Ga0306925_10107292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	2976	Open in IMG/M
3300031890\|Ga0306925_10399917	All Organisms → cellular organisms → Bacteria	1472	Open in IMG/M
3300031890\|Ga0306925_10823231	Not Available	961	Open in IMG/M
3300031893\|Ga0318536_10395553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	698	Open in IMG/M
3300031894\|Ga0318522_10168279	Not Available	828	Open in IMG/M
3300031896\|Ga0318551_10300670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	903	Open in IMG/M
3300031897\|Ga0318520_10394327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	845	Open in IMG/M
3300031912\|Ga0306921_10514134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1391	Open in IMG/M
3300031941\|Ga0310912_10346429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1153	Open in IMG/M
3300031942\|Ga0310916_10472203	Not Available	1068	Open in IMG/M
3300031945\|Ga0310913_10116081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1824	Open in IMG/M
3300031946\|Ga0310910_10396609	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300031947\|Ga0310909_10307225	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300031947\|Ga0310909_10451668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1079	Open in IMG/M
3300031954\|Ga0306926_10110718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3376	Open in IMG/M
3300031954\|Ga0306926_10786984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1147	Open in IMG/M
3300031954\|Ga0306926_11758685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	705	Open in IMG/M
3300032001\|Ga0306922_11220855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	764	Open in IMG/M
3300032001\|Ga0306922_11923524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	578	Open in IMG/M
3300032041\|Ga0318549_10558914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	514	Open in IMG/M
3300032052\|Ga0318506_10251408	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300032054\|Ga0318570_10545234	Not Available	529	Open in IMG/M
3300032059\|Ga0318533_10419090	Not Available	978	Open in IMG/M
3300032059\|Ga0318533_11367601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300032065\|Ga0318513_10646836	Not Available	518	Open in IMG/M
3300032090\|Ga0318518_10251528	Not Available	907	Open in IMG/M
3300032094\|Ga0318540_10216838	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	923	Open in IMG/M
3300032094\|Ga0318540_10310129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	761	Open in IMG/M
3300032261\|Ga0306920_100140512	All Organisms → cellular organisms → Bacteria → Proteobacteria	3595	Open in IMG/M
3300032261\|Ga0306920_100867482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1321	Open in IMG/M
3300033289\|Ga0310914_10931167	Not Available	768	Open in IMG/M
3300033289\|Ga0310914_11647327	Not Available	545	Open in IMG/M
3300033290\|Ga0318519_10412844	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	805	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.15%
Aquatic	Environmental → Aquatic	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.15%
Freshwater	Environmental → Aquatic → Freshwater	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	87.18%
Loam	Environmental → Terrestrial → Soil → Loam	11.97%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	70.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.97%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	39.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.38%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.97%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000700	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 56	Environmental	Open in IMG/M
3300000711	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26	Environmental	Open in IMG/M
3300000862	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026859	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 25 (SPAdes)	Environmental	Open in IMG/M
3300026983	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 21 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12332J11870_1026371	3300000700	Tropical Forest Soil	MVQGVDNIGICTTDVERSVAFYQRLGFSEAYRNDRGVLV
JGI12585J11927_1035491	3300000711	Tropical Forest Soil	MVQGVDNIGICTTDVERSVAFYQRLGFSEAYRNNRGVLV
JGI12579J12822_1048371	3300000862	Tropical Forest Soil	MVQGVDNIGICTTDVERSVAFYQRLGFSEAYRNDRGVLVAAGAAHLFIFA
Ga0066388_1001192381	3300005332	Tropical Forest Soil	MVQGIDNIGICTTDLTRSVRFYEKLGFSEAYRNDRGVMMAA
Ga0066388_1028738151	3300005332	Tropical Forest Soil	MVRGIDNIGICTTGLRSVAFYEKLGLSEAYRNDRGVMMAAGTAQFFSSKCDAPL
Ga0066388_1032833642	3300005332	Tropical Forest Soil	MVQGIDNIGICTTDLTRSVTFYERPGFTEAYRNDRGVMMAAGTVQLFLFQVRRPDPAPVGREL
Ga0066903_1012452895	3300005764	Tropical Forest Soil	ICTTDLTRSVTFYDRLGFSEAYRNDRGVMMAAGTVQLFLFRCGDPIRHQ*
Ga0066903_1069685521	3300005764	Tropical Forest Soil	MIQGVDNIGICTSDVARSVAFYQKLGFSEAYRNERGVMM
Ga0126374_102359283	3300009792	Tropical Forest Soil	MIQGVDNIGICTSDVARSVAFYQKLGFSEAYRNERGVMMAAGST
Ga0126380_100708941	3300010043	Tropical Forest Soil	MVRGIDNIGIGATDLPRSAAFYETLGFSEAYRNDRGVMMAAGTVQLF
Ga0126380_114618391	3300010043	Tropical Forest Soil	MVRGIDNIGICASDLARSVAFYETLGFSEAYRNDRG
Ga0126384_110385231	3300010046	Tropical Forest Soil	MVRGIDNIGISATDLARSVTFYETLGFSEAYHNERGVMMAAGTVQ
Ga0126382_100002933	3300010047	Tropical Forest Soil	MVQGIDNIGMCTTDVERLIAFYQKLGFSETETTAA*
Ga0126382_105390091	3300010047	Tropical Forest Soil	MVQGIDNIGICTTDLTRSVTFYERLGLSEAYRNDRGVMMAAGTVQLFLFQ
Ga0126377_114509901	3300010362	Tropical Forest Soil	MTVQGIDNIGICTTDQTRSVAFYKRLGFIEAYRNDRGVMMAAGTVQLFLFQ
Ga0126377_121254611	3300010362	Tropical Forest Soil	MVQGIDNIGICTTDLTRSVTFYERLGLSEAYRNDRGVMMAAGTVQLFLFQVRRP
Ga0126379_111650792	3300010366	Tropical Forest Soil	MVRGIDNIGIGATALPRSAAFYEILGFSEAYRNDRGVMMVAGT
Ga0126381_1015887672	3300010376	Tropical Forest Soil	MVQGIDNIGICTTDLERSVRFYGRLGLVEAYRNERGVMMAAGSA
Ga0126381_1022288102	3300010376	Tropical Forest Soil	MVRGVDNIGICASDLPRSVAFYETQGFSEAYRNDRGVMLAAGMVQLFLFAAR
Ga0126381_1028152112	3300010376	Tropical Forest Soil	MVRGIDNIGICATNLTQSIAFYEVLGFTEAYRDGRGVMMAAGTAQLFLFATRRSD
Ga0126381_1049358761	3300010376	Tropical Forest Soil	MVRGIDNIGICASDLARPVAFYETLGFSEAYCYDRGIILAAGTVQLFLFGAQW
Ga0126383_107637791	3300010398	Tropical Forest Soil	MVQGIDNIGMCTTNVERLVWFYRKLGFSEAYRNDRGVMMI
Ga0124844_10554661	3300010868	Tropical Forest Soil	MVQGIDNIGIGIDNIGICTTDLTRSVRFYEKLGFSEAYRNDRGV
Ga0124844_10561221	3300010868	Tropical Forest Soil	MVQGIDNIGICTTDLTRSVRFYEKLGFSEAYRNDRGVMMAAG
Ga0124844_10570953	3300010868	Tropical Forest Soil	MVQGIDNIGICTTDLTRSVRFYEKLGFSEAYRNDRGVMM
Ga0124844_11966391	3300010868	Tropical Forest Soil	MVQGIDNIGMCTTTNVERLVWFYRKLGFSEAYRNDRGVMMIAGSVN
Ga0126375_100741241	3300012948	Tropical Forest Soil	MVRGIDNIGIGATDLPRSAAFYETLGFSEAYRNDRGVM
Ga0182041_100412805	3300016294	Soil	MVRGIDNIGICASDLARSVSFYETLGFSEAYRNDRGVMLAAGTVQ
Ga0182041_103096901	3300016294	Soil	MMRGIDNIGICTTDLTRSVAFFEKLGLSEAYRNDRGVM
Ga0182041_104250042	3300016294	Soil	MVQGIDNVGLCTTNVERLIWFYKKLGFSEAYRNDRGVM
Ga0182041_106289381	3300016294	Soil	MVRGIDNIGICASDLARSAAFYEKLGFSEAYRNDRG
Ga0182041_118165651	3300016294	Soil	MVQGIDNIGICTTDVERSVAFYQRLGFSEAYRNDRGVLVAAGAAH
Ga0182033_101303881	3300016319	Soil	MVREIDNIGICTTDLTRSVAFYDKLGLSEAYRNDRGVMIAAGTVQLFL
Ga0182033_104577021	3300016319	Soil	MVQRIDNIGICMTDLTRSVAFYERLGLTEAYRNDRGVMM
Ga0182033_104691372	3300016319	Soil	VVRGIDNIGICASDLARSVPFYETLGFSEAYRNDRGVMLAAGTVQLFLFATRRPDASP
Ga0182033_105212771	3300016319	Soil	VQGIDNIGICTSDLTRSVTFYERLGLTEAYRNDRGVMMAA
Ga0182033_112204031	3300016319	Soil	VIQGIDNIGICTTDVARSVAFYQKLGLSEAYRNDRGV
Ga0182035_100761233	3300016341	Soil	MVRGIDNIGICASDLARSIAFYETLGFSEAYRNDRGVMLAAGTVQLFLFATRR
Ga0182035_113104212	3300016341	Soil	MVRCIDNIGICVTDLPRSVAFYEILGFSEAYRNDRGV
Ga0182032_109518811	3300016357	Soil	MMRGIDNIGICTTDLTRSVAFFEKLGLSEAYRNDRGVMMAAGTVQLFLFQ
Ga0182034_101284483	3300016371	Soil	MVQGIDNIGICATDLERSVRFYRRLGFAEAYRNERGVMMAAGMVQFFLFETRRSNPTPVS
Ga0182040_105425221	3300016387	Soil	MRGIDNIGICTTDLTRSVAFFEKLGLSEAYRNDRGVMMA
Ga0182040_111756681	3300016387	Soil	MIQGIDNIGICTTDLARSVTFYRKLGFSEAYRNDRGV
Ga0182037_105696771	3300016404	Soil	MVQAIDNIGICTTDLMRSVTFYERLGLTEAYRNDRGVMMAAGTVQLFLFQVRRP
Ga0182039_102787071	3300016422	Soil	MVQAIDNIGICTTDLMRSVTFYERLGLTEAYRNDRGVMMAAGTVQLFLFQVRRPDP
Ga0182038_114949551	3300016445	Soil	VIRGVDNIGICTTDVARSVAFYQNLGLTEAYRNDRGVMMVAGDAHLFIF
Ga0187802_100510911	3300017822	Freshwater Sediment	MVQGVDNIGICATDVARTVAFYQTLGFSEAYQNDRGV
Ga0190267_108341031	3300019767	Soil	MVQGVDNIGVCTPDLQRSAAFYETLGFHEAYRNER
Ga0210399_115329712	3300020581	Soil	MIQGIDNIGICTTDVARAVAFYQKLGFSEAYVTTAAC
Ga0126371_113269991	3300021560	Tropical Forest Soil	LVQGIDNIGICAADLARSVQFYGRLGFAEAYRNERGVMMAAGSV
Ga0126371_113503462	3300021560	Tropical Forest Soil	MVRGIDNIGICASDLARSVAFYETLGFSEAYRNDRGVMLA
Ga0126371_117486091	3300021560	Tropical Forest Soil	MVRGIDNIGICATNLTQSIAFYEVLGFTEAYRDGRGVMMAAGTAQLFLFA
Ga0207859_10165232	3300026859	Tropical Forest Soil	MVQGVDNIGICTTDVERSVAFYQRLGFSEAYRNDRGVLVAAGA
Ga0207856_10344932	3300026983	Tropical Forest Soil	MVQGVDNIGICTTDVERSVAFYQRLGFSEAYRNDRGVLVAAGAA
Ga0318516_100591063	3300031543	Soil	MVRGIDNIGICASDLARSIAFYETLGFSEAYRNDRGVMLAAGTVQLFLFAT
Ga0318541_102089881	3300031545	Soil	MVQGIDNIGICATDLERSVRFYRRLGFAEAYRNERGVMMA
Ga0318541_107736411	3300031545	Soil	MIKGIDNIGICTTDTARSVVFYQRLGFSEAYRNDRGVLMTAGSAHLFIFA
Ga0318538_102507031	3300031546	Soil	MVRGIDNIGICAADLARSVAFYEALGFSEAYRNDRGVMMAAGTVQL
Ga0318538_105346791	3300031546	Soil	VVRGIDNIGICASDLARSVPFYETLGFSEAYRNDRGVMLAAGTVQLFLFATRRPDASPVG
Ga0318573_100798501	3300031564	Soil	MVRGIDNIGICASDLARSVSFYETLGFSEAYRNDRGVMLAAGTVQLFLFATRRRDA
Ga0318573_103356522	3300031564	Soil	MVRGIDNIGICATDLARSVAFYEALGFSEAYRNDRGVMMAAGTVQL
Ga0318573_105789692	3300031564	Soil	MVVDNIGICTTDLTRSVTFYERLGLTKAYRNDRGVM
Ga0318555_105646583	3300031640	Soil	MMRGIDNIGICTTDLTRSVAFYDKLGLSEAYRNDRGVMMAAGTVQLF
Ga0306917_100468511	3300031719	Soil	MVQAIDNIGICTTDLTRSVTFYERLGLTEAYRNDRGVMMAAGTVQLFLFQVRRPDPAPVSRELGLFG
Ga0306917_101966661	3300031719	Soil	MVQAIDNIGICTTDLMRSVTFYERLGLTEAYRNDRGVMMAAGTVQLFLFQVRRPDPAP
Ga0306917_102800101	3300031719	Soil	MVQAIDNIGICTTDLTRSVTFYERLGLTEAYRNDRGVMMAAGTVQLFLFQVRRPDPAP
Ga0306917_103199481	3300031719	Soil	VVRGIDNIGICASDLARSVPFYETLGFSEAYRNDRGVMLAAGTVQLFLFATRR
Ga0306917_104026982	3300031719	Soil	MVRGIDNIGICASDLARSVSFYETLGFSEAYRNDRGVMLAAGTVQLFLFATRRP
Ga0318500_103264961	3300031724	Soil	MVRGIDNIGICASDLARSVPFYETLGFSEAYRNDRGVMLAAGTVQLFLFATRRPDASPVG
Ga0318501_101133292	3300031736	Soil	MVRGIDNIGICASDLARSIAFYETLGFSEAYRNDRGVMLAAGTV
Ga0318501_105641472	3300031736	Soil	MVQGIDNIGICTTDLTRSVTFYERLGLSEAYRNDRGVMM
Ga0318501_106460512	3300031736	Soil	MMRGIDNIGICTTDLTRSVAFFEKLGLSEAYRNDRGVMMATGTVQLFLFQVRRPDP
Ga0306918_105056154	3300031744	Soil	VQGIDNIGICTSDLTRSVTFYERLGLTEAYRNDRGVMMAAGTVQLFLFQVRR
Ga0318502_102364621	3300031747	Soil	MMRGIDNIGICTTDLTRSVTFYDKLGLSEAYRNDRGVMMAA
Ga0318535_103051712	3300031764	Soil	MVVDNIGICTTDLTRSVTFYERLGLTEAYRNDRGV
Ga0318509_103050342	3300031768	Soil	MVRGIDNIGICAADLARSVAFYEALGFSEAYRNDRGVMMAAGTV
Ga0318509_106104201	3300031768	Soil	MVQAIDNIGICTTDLTRSVTFYERLGLTEAYRNDRGVMMAAGTVQL
Ga0318521_109500672	3300031770	Soil	VIRGIDNIGICTTDVARSVAFYQKLGLSEAYRNDRGVM
Ga0318543_104414371	3300031777	Soil	MVRGIDNIGICAGDLARSVAFYETIGFSEAYRNDRGVMLAAGTVQLFLFAGQRSDARPVDRELG
Ga0318566_102580012	3300031779	Soil	VIRGIDNIGICTTDVARSVAFYQKLGLSEAYRNDRGVMM
Ga0318568_109979611	3300031819	Soil	MVRGIDNIGICASDLARSIAFYETLGFSEAYRNDRGVMLAAGTVQLFLFA
Ga0310917_101565241	3300031833	Soil	VIRGVDNIGICTTDVARSVAFYQNLGLTEAYRNDR
Ga0306919_101421843	3300031879	Soil	MMRGIDNIGICTTDLTRSVAFFEKLGLSEAYRNDRGVMMAAGPVQLFLFQVRRPDPAPVGREL
Ga0306925_101072921	3300031890	Soil	MVRGIDNIGICAADLARSVAFYEALGFSEAYRNDR
Ga0306925_103999171	3300031890	Soil	VIRGVDNIGICTTDVARSVAFYQNLGLTEAYRNDRGVM
Ga0306925_108232311	3300031890	Soil	MVRGIDNIGICASDLARSVSFYETLGFSEAYRNDRGVMLAAGTVQLFLFATR
Ga0318536_103955532	3300031893	Soil	MRGIDNIGICTTDLTRSVAFYDKLGLSEAYRNDRGVMMAT
Ga0318522_101682791	3300031894	Soil	MVRGIDNIGICASDLARSVSFYETLGFSEAYRNDRGVMLAA
Ga0318551_103006701	3300031896	Soil	MRGIDNIGICTTDLTRSVAFYDKLGLSEAYRNDRGVMMAAG
Ga0318520_103943272	3300031897	Soil	MVRGIDNIGICASDLARSIAFYETLGFSEAYRNDRGVMLAAGTVQLFLFATRRSDPP
Ga0306921_105141342	3300031912	Soil	MVRGIDNIGICAGDLARSVAFYETIGFSEAYRNDRG
Ga0310912_103464292	3300031941	Soil	MVVDNIGICTTDLTRSVTFYERLGLTEAYRNDRGVMMAAGTVQ
Ga0310916_104722031	3300031942	Soil	MMRGIDNIGICTADLPRSVAFYQGLGFSEQYRNQRG
Ga0310913_101160811	3300031945	Soil	MVRGIDNIGICASDLARSIAFYETLGFSEAYRNDRGVMLAAGTVQLFLFATRRSDP
Ga0310910_103966091	3300031946	Soil	MVQGIDNIGICATDLERSVRFYRRLGFAEAYRNERGVMMAAGR
Ga0310909_103072252	3300031947	Soil	MVQAIDNIGICTTDLMRSVTFYERLGLTEAYRNDRGVMMAAGTVQLFLFQVRRPDPA
Ga0310909_104516682	3300031947	Soil	MIKGIDNIGICTTDTARSVVFYQRLGFSEAYRNDRGVLMTAGSAHLFIFAT
Ga0306926_101107184	3300031954	Soil	MVRGIDNIGICAGDLARSVAFYETIGFSEAYRNDRGVMLAAGTVQLFLFAGQRSDARPV
Ga0306926_107869841	3300031954	Soil	MVRGIDNIGICASDLARSVSFYETLGFSEAYRNDRGVMLAAGTVQLFLFATRRPDASP
Ga0306926_117586852	3300031954	Soil	MVQGIDNIGICTTDVERSVAFYQRLGFSEAYRNDRG
Ga0306922_112208552	3300032001	Soil	MVRGIDNIGICCAGDLARSVAFYETLGFSEAYRNDRGVMLAAGTVQL
Ga0306922_119235242	3300032001	Soil	MVQAIDNIGICTTDLTRSVTFYERLGLTEAYRNDRGVMMAAGTVQLFLFQVRRPDPAPVSRELGLFDNPP
Ga0318549_105589141	3300032041	Soil	MRGIDNIGICTTDLTRSVAFYDKLGLSEAYRNDRGVMMAAGTVCSFFSFR
Ga0318506_102514081	3300032052	Soil	MVRGIDNIGICASDLARSAAFYEKLGFSEAYRNDRGVM
Ga0318570_105452342	3300032054	Soil	MVRGIDNIGICAANLERSVAFYEALGFSEAYRNNRGVMMAAG
Ga0318533_104190901	3300032059	Soil	VVRGIDNIGICASDLARSVPFYETLGFSEAYRNDRGVMLAAGTVQLFLFATRRPDAS
Ga0318533_111632591	3300032059	Soil	MMRGIDNIGICTADLPRTVAFYQGLGFSEEYRNERGVLMANEGVRLFLFATRKPNPPPVARE
Ga0318533_113676012	3300032059	Soil	MVRGIDNIGICTADLPRSVAFYQGLGFSEEYRNERGVLMANEGVR
Ga0318513_106468361	3300032065	Soil	MVRGIDNIGICATDLSRSVAFYETLGFSEAYRNDRGVMLAAGTVHL
Ga0318518_102515281	3300032090	Soil	MVRGIDNIGICASDLARSVPFYETLGFSEAYRNDRGVMLAAG
Ga0318540_102168382	3300032094	Soil	MVQGIDNIGICATDLERSVRFYGRLGFVEAYRNERGVMMAAGSVQ
Ga0318540_103101292	3300032094	Soil	MLQAIDNIGICTTDLTRSVIFYERLGLTEAYRNDRGVMMAAG
Ga0306920_1001405125	3300032261	Soil	MVQGIDNIGICTTDVERSVAFYQRLGFSEAYRNDR
Ga0306920_1008674821	3300032261	Soil	MVRGIDNIGICASDLARSVSFYETLGFSEAYRNDRGVMLAAGTVQLFLFATRRRDAW
Ga0310914_109311672	3300033289	Soil	MVRGIDNIGICASDLARSVSFYETLGFSEAYRNDRGVMLAAGTVQLFLFATRRRD
Ga0310914_116473271	3300033289	Soil	MVRGIDNIGICAGDLARSVAFYETIGFSEAYRNDRGVMLAAGTVQLFLFAGQRSDARPVD
Ga0318519_104128442	3300033290	Soil	MVQGIDNIGICATDLERSVRFYGRLGFVEAYRNERG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F076736

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences