Basic Information | |
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Family ID | F076722 |
Family Type | Metagenome |
Number of Sequences | 117 |
Average Sequence Length | 53 residues |
Representative Sequence | MADRNGGGQIAEELRALVSDAETLLRSTANAGGAETQERAQATLQDLRAR |
Number of Associated Samples | 87 |
Number of Associated Scaffolds | 117 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 99.15 % |
% of genes from short scaffolds (< 2000 bps) | 86.32 % |
Associated GOLD sequencing projects | 84 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (88.034 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (70.940 % of family members) |
Environment Ontology (ENVO) | Unclassified (82.051 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (73.504 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 76.00% β-sheet: 0.00% Coil/Unstructured: 24.00% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Terrestrial Soil Tropical Forest Soil Soil Soil Hardwood Forest Soil Soil Tropical Peatland Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Miscanthus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0070678_1013228072 | 3300005456 | Miscanthus Rhizosphere | MADRNGGGEIAEELRTLVSDAEALLRSTANAGGAEVQERAQATLQELRARLSALEDTVRSRAR |
Ga0070717_103091991 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MADRNGGGEIAEELRTLVSDAEALLRSTSNAGGAEVQERAQA |
Ga0126380_104703222 | 3300010043 | Tropical Forest Soil | MADRNGGGEIAEELRSLESDAEALLRSTANAGGAEVQERAQATLQELRARLSALEDTVRSRARDVDSY |
Ga0126382_102905252 | 3300010047 | Tropical Forest Soil | MKFQGKGVAAMTDRNGGGGQIAEELRALVSDAETLLRSTANAGGAEAQERAQATLQDLRARLTALEDQVRSRARDVDTYVR |
Ga0126373_109761762 | 3300010048 | Tropical Forest Soil | MTDRNGGGQIAEELRALVSDAETLLRSTTNAGGADAQEQ |
Ga0126372_104653281 | 3300010360 | Tropical Forest Soil | MADRNGGGEIAEELRSLVSDAEALLRSTANAGGAD |
Ga0126372_119815531 | 3300010360 | Tropical Forest Soil | MADRNGGGQIAEDLRSIVSDAEALLRSTANAGDAQMQERAQATLQELRARLNALE |
Ga0134121_108779822 | 3300010401 | Terrestrial Soil | MAERNGGGQVAEELRALVSDAEALLSSTANAGNAEVQERARATLQELRARLNALEDTVRSRARDVDSYVRDNPW |
Ga0182036_117756781 | 3300016270 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTTNAGGAETQERAQATLQELRARLNALEDTVRS |
Ga0182035_111665212 | 3300016341 | Soil | MADRNGGGEIAEELRSLVSDAEALLRSTANAGGADVQERAQATLQELRA |
Ga0182037_113283381 | 3300016404 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEFQDRAQ |
Ga0182039_101510731 | 3300016422 | Soil | MADRNGGGQIAEELRALVSDAETLLRSTANAGGAETQERAQATLQDLRAR |
Ga0182038_100743704 | 3300016445 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTTNAGGADAQER |
Ga0182038_110213442 | 3300016445 | Soil | MADRNGGGEIAEELRSLVSDAEALLRSTANAGGADVQERAQATLQELRARLNALEDTVRSRARDVDSYV |
Ga0187824_100245421 | 3300017927 | Freshwater Sediment | MAESNGGGQVAEQLRALVSDAEALLRSTANAGNAEVQERAQATLQELRAR |
Ga0187825_101244672 | 3300017930 | Freshwater Sediment | MAESNGGGQVAEQLRALVSDAEALLRSTANAGNAEVQERAQATLQELRARLNALEDTVRSRARDVDSYVRD |
Ga0187821_101107222 | 3300017936 | Freshwater Sediment | MAESNGGGQVAEQLRALVSDAEALLRSTANAGNAEVQERAQATLQE |
Ga0187776_114101482 | 3300017966 | Tropical Peatland | MTESFNGGRIAEDLRALVSDAEALLRSTTNATDGVE |
Ga0187783_100269206 | 3300017970 | Tropical Peatland | MTESFNGGRIAEDLRALVSDAEALLRTTTTATTTGGAELQERAQATLREMRARLSDLE |
Ga0187782_105543831 | 3300017975 | Tropical Peatland | MTESFNGGRIAEDLRALVSDAEALLRTTTTATTAGGAELQERAQATLREMRARLSDLEEQVRDRARDVDSY |
Ga0187784_107155931 | 3300018062 | Tropical Peatland | MSERYDGGRLAEDLRALVSDAETLLRDTANVAGADLQERAQVALREMRARLAALEDNVRERARDV |
Ga0187770_115441082 | 3300018090 | Tropical Peatland | MSEAYDGGRLAEDLRTLVDDAEALLSATTNAGGAEVQERAQASLQDLRIRLAALEERVRARAR |
Ga0207646_116703572 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MGEGNGGGQIAEELRTLVSDAEALLRSTTNAGGAEVQQRAQATLQDLRARLSALED |
Ga0209465_105224071 | 3300027874 | Tropical Forest Soil | MADRNGGGEIAEELRSLVSDAEALLRSTANAGGADVQERAQATLQELRARLSAL |
Ga0318516_108222212 | 3300031543 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTTNAGGADAQEQAQATLQE |
Ga0318571_100992531 | 3300031549 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTTNAGGAETQERAQATLQELRARLNALE |
Ga0318573_100035497 | 3300031564 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTTNAGGADAQERA |
Ga0318515_101894212 | 3300031572 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEFQDRAQATLQELRARLNALEETVRSRARSSC |
Ga0318515_107149082 | 3300031572 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTTNAGGAEMQERAQATLQELRARLNALEDTVRSRARDVDSYV |
Ga0318555_102562161 | 3300031640 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTTNAGGADAQEQAQATLQELRAR |
Ga0318561_100819581 | 3300031679 | Soil | MIESNGGGQIAEELRALVSEAEALLRSTANAGGAEAQERAQATLQELRTRLNALEETVRSRARDVDSYVR |
Ga0318561_107287311 | 3300031679 | Soil | MADRNGGGEIAEELRSLVSDAEALLRSTANAGGADVQERAQATLQELRARLNALEDTVRSRARDVDSYVRDNP |
Ga0318574_106633981 | 3300031680 | Soil | MSDGNGGGQIAEELRALVSDAETLLRSTANAGGAEAQERAQATLQDLRARLGALED |
Ga0318572_101284842 | 3300031681 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTANAGGADTQERAQATLQELRARLNALEDTVRSRARDVDSYVHEKPCVRCCAR |
Ga0318572_105892932 | 3300031681 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTTNAGGAEMQERAQATL |
Ga0318572_108068392 | 3300031681 | Soil | MSDRNGGGQIAEELRALVSEAETLLRSTANASGAEVQ |
Ga0318560_100245264 | 3300031682 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTANAGGADMPDRAQATLQDLRARLAALEDQV |
Ga0318560_102103902 | 3300031682 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEFQDRAQATLQELRARLNAPSP |
Ga0318560_106340572 | 3300031682 | Soil | MSDRNGGGQIAEELRALVSDAEALLSSTANAGSAEFQERAQATLQELRVRLNALEDTV |
Ga0318493_107150211 | 3300031723 | Soil | MADRNGGGEIAEELRSLVSDAEALLRSTANAGGADVQERAQATLQELRARL |
Ga0318500_101353942 | 3300031724 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEVQD |
Ga0318500_105672861 | 3300031724 | Soil | MADRNGGGQIAEDLRALVSDAEALLRSTTNTGGADAQERAQATLQDLRARLSALEG |
Ga0318500_106165472 | 3300031724 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTTNAGGADAQERAQATLQDLRARLSTLEDTV |
Ga0306918_103156011 | 3300031744 | Soil | MADRNGGGEIAEELRSLVSDAEALLRSTANAGGADVQERAQATLQELRARLNALEDTVRSRAR |
Ga0318502_108142082 | 3300031747 | Soil | MADRNGGGEIAEELRSLVSDAEALLRSTANAGGADVQERAQA |
Ga0318494_102477831 | 3300031751 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTANAGGADMPDRAQATLQDLRARLAALEDQVRARARDVDTYVR |
Ga0318494_103373181 | 3300031751 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEVQDRAQATLQELRARLNALEE |
Ga0318537_103489711 | 3300031763 | Soil | MADRNGGGQIAEELRALVSDAETLLRSTANAGGAETQERAQATLQDLRARLSALE |
Ga0318537_104087122 | 3300031763 | Soil | MIESNGGGQIAEELRALVSEAEALLRSTANAGGAEAQERAQATL |
Ga0318554_100345084 | 3300031765 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEVQDRAQATLQELRARLNAL |
Ga0318554_100542481 | 3300031765 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTTNAGGADAQERAQATLQDLRAR |
Ga0318509_103765752 | 3300031768 | Soil | MSDRNGGGQIAEELRALVSEAETLLRSTANAGGAEVQERAQATLQELRARLNSLEDTV |
Ga0318526_101901171 | 3300031769 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTTNAGGAETQERAQATLQELRARLNALED |
Ga0318526_103652681 | 3300031769 | Soil | MSDRNGGGQIAEELRTLVSDAEALLSSTANAGSAEFQERAQATVQE |
Ga0318521_100616661 | 3300031770 | Soil | MADRNGGGEIAEELRSLVSDAEALLRSTANAGGADVQERAQAT |
Ga0318521_105166821 | 3300031770 | Soil | MADRNGGGQIAEDLRALVSDAEALLRSTTNTGGADAQERAQATLQD |
Ga0318546_108580052 | 3300031771 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTTNAGGAEMQERAQATLQELRARLNALEDTV |
Ga0318498_103430242 | 3300031778 | Soil | MIESNGGGQIAEELRALVSEAEALLRSTANAGGAEAQERAQATLQELRTRLNALEETVRSRARDVDSY |
Ga0318498_103652592 | 3300031778 | Soil | MSDRNGGGQIAEELRALVSEAETLLRSTANAGGAEAQERAQATLQELRARL |
Ga0318508_10745671 | 3300031780 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTTNAGGADAQERAQATLQDLRARLS |
Ga0318552_101220112 | 3300031782 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEVQDRA |
Ga0318529_100334921 | 3300031792 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTANAGGADMPDRAQATLQDLRARLAALEDQVRARAR |
Ga0318529_101060391 | 3300031792 | Soil | MSDRNGGGQIAEELRALVSDAETLLRSTTNAGGADAQERAQAT |
Ga0318548_103569201 | 3300031793 | Soil | MADRNGGGQIAEDLRALVSDAEALLRSTTNTGGADAQERAQATLQDLRARLSALEGTVRSRARDVD |
Ga0318503_102170531 | 3300031794 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTTNAGGADAQERAQATLQDLRARLSTLEDTVRARA |
Ga0318503_103099581 | 3300031794 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTANAGGADMPDRAQATLQDLRARLAALEDQVRARA |
Ga0318557_100044231 | 3300031795 | Soil | MSDRNGGGQIAEELRALVSDAETLLRSTTNAGGADAQERAQ |
Ga0318550_102254661 | 3300031797 | Soil | MADRNGGGEIAEELRSLVSDAEALLRSTANAGGADVQERAQ |
Ga0318523_105678362 | 3300031798 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTANAGGADTQERAQATLQELRARLNALE |
Ga0318565_100394554 | 3300031799 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTTNAGGADAQE |
Ga0318497_102709101 | 3300031805 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTTNAGGADAQEQAQATLQELRARLSTLE |
Ga0318567_101800812 | 3300031821 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEFQDRAQATLQE |
Ga0318512_103041312 | 3300031846 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEVQDRAQATLQELRARLNALEDTVRSRARDV |
Ga0318495_100124126 | 3300031860 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTANAGGADMPDRAQATLQDLRARLAALEDQVRA |
Ga0306919_110108551 | 3300031879 | Soil | MADRNGGGQIAEDLRALVSDAEALLRSTTNTGGADAQE |
Ga0318544_101995162 | 3300031880 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEFQD |
Ga0306925_103890733 | 3300031890 | Soil | MADRNGGGQIAEELRALVSDAETLLRSTANAGGAETQER |
Ga0318536_100397821 | 3300031893 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEVQ |
Ga0318536_101766971 | 3300031893 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTTNAGGADAQERAQATLQDLRARLSTLED |
Ga0318522_100905111 | 3300031894 | Soil | MADRNGGGEIAEELRSLVSDAEALLRSTANAGGADVQERAQATLQELRARLNALEDTVRSRARDVDSYVRD |
Ga0310916_110381251 | 3300031942 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTANAGGADTQERAQATL |
Ga0318530_100471081 | 3300031959 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEVQDRAQATLQELRARLNALEETVRSRARDVDSYVR |
Ga0318530_100560111 | 3300031959 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTTNAGGAE |
Ga0307479_103185911 | 3300031962 | Hardwood Forest Soil | MGEGNGGGQIAEELRTLVSDAEALLRSTTNAGGAEVQ |
Ga0318531_101198672 | 3300031981 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTTNAGGAET |
Ga0306922_111977761 | 3300032001 | Soil | MADRNGGGEIAEELRSLVSDAEALLRSTANAGGADVQERAQATLQELRARLNALEDT |
Ga0318569_100275754 | 3300032010 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEVQDRAQATLQELRARLNALEETV |
Ga0318569_100370144 | 3300032010 | Soil | MSDRNGGGQIAEELRALVSEAETLLRSTANAGGAEVQERAQAT |
Ga0318507_100418961 | 3300032025 | Soil | MSDRNGGGQIAEELRALVSDAETLLRSTTNAGGADA |
Ga0310911_103805111 | 3300032035 | Soil | MADRNGGGQIAEELRALVSDAETLLRSTANAGGADMPDRAQATLQDLRARLA |
Ga0310911_104639351 | 3300032035 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEVQDRAQATLQELRA |
Ga0318559_103942591 | 3300032039 | Soil | MADRNGGGQIAEELRALVSDAETLLRSTANAGGAETQERAQATLQDLRARLSALEDQVRA |
Ga0318549_101346731 | 3300032041 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTTNAGGAETRERAQA |
Ga0318549_102508492 | 3300032041 | Soil | MADRNGGGEIAEELRSLVSDAEALLRSTANAGGADVQERAQATLQEL |
Ga0318549_104505301 | 3300032041 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEVQDRAQATLQELRARLNALEETVRSRARDVDSYVRDN |
Ga0318556_106695231 | 3300032043 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEFQDRAQATLQELRARLNALEATVRSRARDVDSYVRDN |
Ga0318575_102251222 | 3300032055 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTANTGGADTQERAQATLQELRARLNALEDTVRSRARDVDSYV |
Ga0318533_108895792 | 3300032059 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEVQDRAQ |
Ga0318505_105665202 | 3300032060 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTTNAGGADAQEQAQATLQELRARLSTLEDTVRARARDVDSYVRDNPW |
Ga0318504_100955471 | 3300032063 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEVQDRAQATLQE |
Ga0318504_104523901 | 3300032063 | Soil | MTDRNGGGQIAEDLRAIVTDAEALLRSTATAAGTDAQERAQATLQDLRARLNALEQT |
Ga0318514_104561481 | 3300032066 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTTNAGGAETQERAQATLQE |
Ga0318524_101131841 | 3300032067 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTANAGGADMP |
Ga0306924_100635826 | 3300032076 | Soil | MSESNGGGQIAEELRTLVSEAEALLRSTANAGGAEVQDRAQATLQELRARLNALEETVRSRARDVDSYV |
Ga0306924_100979641 | 3300032076 | Soil | MSDGNGGGQIAEELRALVSDAETLLRSTANAGGAEAQERAQATLQD |
Ga0318525_106215881 | 3300032089 | Soil | MADRNGGGQIAEELRALVSDAETLLRSTANAGGAE |
Ga0318525_106328762 | 3300032089 | Soil | MADRNGGGQIAEDLRALVSDAEALLRSTTNTGGADAQERAQ |
Ga0318577_102858812 | 3300032091 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTANAGGADMPDRAQATLQDLRARLAALEDQ |
Ga0318540_103124662 | 3300032094 | Soil | MIESNGGGQIAEELRALVSEAEALLRSTANAGGAEAQERAQATLQELRTRLNALEETVRSRARDVDSYVRDNP |
Ga0318540_105855531 | 3300032094 | Soil | MTDRNGGGQIAEELRALVSDAETLLRSTANAGGADMPDRAQATLQDLRARLA |
Ga0307472_1000046931 | 3300032205 | Hardwood Forest Soil | MGEGNGGGQIAEELRTLVSDAEALLRSTTNAGGAE |
Ga0306920_1009525331 | 3300032261 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTANAGGADTQERAQATLQELRARLNALEDTVRSRARDVDSY |
Ga0335079_111978042 | 3300032783 | Soil | MAERNGGGQVAEELRALVSDAEALLRSTANAGNAEVQERAQATLQELRARLHA |
Ga0310914_105984582 | 3300033289 | Soil | MADRNGGGEIAEELRSLVSDAEALLRSTANAGGADVQERAQATLQELR |
Ga0310914_110773651 | 3300033289 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTANAGGADTQERAQATLQELRARLNALEDTVRS |
Ga0318519_103632381 | 3300033290 | Soil | MADRNGGGQIAEDLRAIVTDAEALLRSTANAGGADTQERAQATLQELRARLNALEDTVR |
Ga0318519_108381232 | 3300033290 | Soil | MADRNGGGQIAEELRALVSDAETLLRSTANAGGAETQERAQATLQDLRARLSALEDQV |
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