NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F076673

Metagenome Family F076673

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F076673
Family Type Metagenome
Number of Sequences 117
Average Sequence Length 50 residues
Representative Sequence PFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLANFIVLQNSE
Number of Associated Samples 20
Number of Associated Scaffolds 117

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.15 %
% of genes from short scaffolds (< 2000 bps) 18.80 %
Associated GOLD sequencing projects 7
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (84.615 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces
(100.000 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
(100.000 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 69.39%    β-sheet: 0.00%    Coil/Unstructured: 30.61%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 117 Family Scaffolds
PF14607GxDLY 4.27
PF13377Peripla_BP_3 3.42
PF00570HRDC 3.42
PF12833HTH_18 3.42
PF07596SBP_bac_10 3.42
PF01042Ribonuc_L-PSP 2.56
PF03781FGE-sulfatase 1.71
PF00202Aminotran_3 1.71
PF10066DUF2304 1.71
PF07587PSD1 1.71
PF08532Glyco_hydro_42M 1.71
PF01467CTP_transf_like 1.71
PF02836Glyco_hydro_2_C 1.71
PF01041DegT_DnrJ_EryC1 1.71
PF00692dUTPase 1.71
PF00285Citrate_synt 1.71
PF08531Bac_rhamnosid_N 1.71
PF00171Aldedh 1.71
PF00724Oxidored_FMN 1.71
PF00005ABC_tran 1.71
PF01943Polysacc_synt 1.71
PF01476LysM 0.85
PF00977His_biosynth 0.85
PF02838Glyco_hydro_20b 0.85
PF07690MFS_1 0.85
PF03602Cons_hypoth95 0.85
PF05343Peptidase_M42 0.85
PF00498FHA 0.85
PF05592Bac_rhamnosid 0.85
PF08903DUF1846 0.85
PF03992ABM 0.85
PF12146Hydrolase_4 0.85
PF01227GTP_cyclohydroI 0.85
PF07394DUF1501 0.85
PF12668DUF3791 0.85
PF16126DUF4838 0.85
PF01116F_bP_aldolase 0.85
PF07498Rho_N 0.85
PF14486DUF4432 0.85
PF02661Fic 0.85
PF04951Peptidase_M55 0.85
PF13560HTH_31 0.85
PF10418DHODB_Fe-S_bind 0.85
PF05448AXE1 0.85
PF00329Complex1_30kDa 0.85
PF00575S1 0.85
PF13538UvrD_C_2 0.85
PF02367TsaE 0.85
PF00263Secretin 0.85
PF09339HTH_IclR 0.85
PF08238Sel1 0.85
PF00149Metallophos 0.85
PF01979Amidohydro_1 0.85
PF08497Radical_SAM_N 0.85
PF13439Glyco_transf_4 0.85
PF13472Lipase_GDSL_2 0.85
PF00375SDF 0.85
PF02492cobW 0.85
PF04257Exonuc_V_gamma 0.85
PF04616Glyco_hydro_43 0.85
PF00144Beta-lactamase 0.85
PF01872RibD_C 0.85
PF06452CBM9_1 0.85
PF01842ACT 0.85
PF02817E3_binding 0.85
PF00006ATP-synt_ab 0.85
PF00474SSF 0.85
PF10688Imp-YgjV 0.85
PF08281Sigma70_r4_2 0.85
PF00535Glycos_transf_2 0.85
PF04932Wzy_C 0.85
PF12706Lactamase_B_2 0.85
PF01258zf-dskA_traR 0.85
PF02915Rubrerythrin 0.85
PF07963N_methyl 0.85
PF00926DHBP_synthase 0.85
PF07944Glyco_hydro_127 0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 117 Family Scaffolds
COG2165Type II secretory pathway, pseudopilin PulGCell motility [N] 6.84
COG0251Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 familyDefense mechanisms [V] 2.56
COG0042tRNA-dihydrouridine synthaseTranslation, ribosomal structure and biogenesis [J] 1.71
COG19022,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) familyEnergy production and conversion [C] 1.71
COG1874Beta-galactosidase GanACarbohydrate transport and metabolism [G] 1.71
COG2873O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependentAmino acid transport and metabolism [E] 1.71
COG1262Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domainPosttranslational modification, protein turnover, chaperones [O] 1.71
COG1104Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS familyAmino acid transport and metabolism [E] 1.71
COG3250Beta-galactosidase/beta-glucuronidaseCarbohydrate transport and metabolism [G] 1.71
COG1012Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenaseLipid transport and metabolism [I] 1.71
COG0756dUTP pyrophosphatase (dUTPase)Defense mechanisms [V] 1.71
COG0717dCTP deaminaseNucleotide transport and metabolism [F] 1.71
COG0626Cystathionine beta-lyase/cystathionine gamma-synthaseAmino acid transport and metabolism [E] 1.71
COG0520Selenocysteine lyase/Cysteine desulfuraseAmino acid transport and metabolism [E] 1.71
COG0014Gamma-glutamyl phosphate reductaseAmino acid transport and metabolism [E] 1.71
COG4230Delta 1-pyrroline-5-carboxylate dehydrogenaseAmino acid transport and metabolism [E] 1.71
COG0436Aspartate/methionine/tyrosine aminotransferaseAmino acid transport and metabolism [E] 1.71
COG0399dTDP-4-amino-4,6-dideoxygalactose transaminaseCell wall/membrane/envelope biogenesis [M] 1.71
COG0372Citrate synthaseEnergy production and conversion [C] 1.71
COG4868Uncharacterized conserved protein, UPF0371 familyFunction unknown [S] 0.85
COG2195Di- or tripeptidaseAmino acid transport and metabolism [E] 0.85
COG2242Precorrin-6B methylase 2Coenzyme transport and metabolism [H] 0.85
COG2265tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD familyTranslation, ribosomal structure and biogenesis [J] 0.85
COG2367Beta-lactamase class ADefense mechanisms [V] 0.85
COG3533Beta-L-arabinofuranosidase, GH127 familyCarbohydrate transport and metabolism [G] 0.85
COG2890Methylase of polypeptide chain release factorsTranslation, ribosomal structure and biogenesis [J] 0.85
COG3262Ni,Fe-hydrogenase III component GEnergy production and conversion [C] 0.85
COG3525N-acetyl-beta-hexosaminidaseCarbohydrate transport and metabolism [G] 0.85
COG3307O-antigen ligaseCell wall/membrane/envelope biogenesis [M] 0.85
COG3408Glycogen debranching enzyme (alpha-1,6-glucosidase)Carbohydrate transport and metabolism [G] 0.85
COG3458Cephalosporin-C deacetylase or related acetyl esteraseSecondary metabolites biosynthesis, transport and catabolism [Q] 0.85
COG109223S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmITranslation, ribosomal structure and biogenesis [J] 0.85
COG01083,4-dihydroxy-2-butanone 4-phosphate synthaseCoenzyme transport and metabolism [H] 0.85
COG0191Fructose/tagatose bisphosphate aldolaseCarbohydrate transport and metabolism [G] 0.85
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 0.85
COG0508Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) componentEnergy production and conversion [C] 0.85
COG074216S rRNA G966 N2-methylase RsmDTranslation, ribosomal structure and biogenesis [J] 0.85
COG0802tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaETranslation, ribosomal structure and biogenesis [J] 0.85
COG0852NADH:ubiquinone oxidoreductase 27 kD subunit (chain C)Energy production and conversion [C] 0.85
COG1032Radical SAM superfamily enzyme YgiQ, UPF0313 familyGeneral function prediction only [R] 0.85
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 0.85
COG1330Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V)Replication, recombination and repair [L] 0.85
COG1362Aspartyl aminopeptidaseAmino acid transport and metabolism [E] 0.85
COG1363Putative aminopeptidase FrvXCarbohydrate transport and metabolism [G] 0.85
COG1506Dipeptidyl aminopeptidase/acylaminoacyl peptidaseAmino acid transport and metabolism [E] 0.85
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 0.85
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 0.85
COG1734RNA polymerase-binding transcription factor DksATranscription [K] 0.85

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms84.62 %
UnclassifiedrootN/A15.38 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300018427|Ga0187903_11226278Not Available535Open in IMG/M
3300018430|Ga0187902_11091077All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae625Open in IMG/M
3300018475|Ga0187907_10000114All Organisms → cellular organisms → Bacteria171174Open in IMG/M
3300018475|Ga0187907_10002121All Organisms → cellular organisms → Bacteria58730Open in IMG/M
3300018475|Ga0187907_10002537All Organisms → cellular organisms → Bacteria54017Open in IMG/M
3300018475|Ga0187907_10003282All Organisms → cellular organisms → Bacteria47455Open in IMG/M
3300018475|Ga0187907_10003524All Organisms → cellular organisms → Bacteria45699Open in IMG/M
3300018475|Ga0187907_10004707All Organisms → cellular organisms → Bacteria38982Open in IMG/M
3300018475|Ga0187907_10004734All Organisms → cellular organisms → Bacteria38907Open in IMG/M
3300018475|Ga0187907_10005452All Organisms → cellular organisms → Bacteria35537Open in IMG/M
3300018475|Ga0187907_10009274All Organisms → cellular organisms → Bacteria25415Open in IMG/M
3300018475|Ga0187907_10011038All Organisms → cellular organisms → Bacteria22597Open in IMG/M
3300018475|Ga0187907_10012010All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae21289Open in IMG/M
3300018475|Ga0187907_10012166All Organisms → cellular organisms → Bacteria21092Open in IMG/M
3300018475|Ga0187907_10013087All Organisms → cellular organisms → Bacteria19981Open in IMG/M
3300018475|Ga0187907_10018365All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae15483Open in IMG/M
3300018475|Ga0187907_10019501All Organisms → cellular organisms → Bacteria14821Open in IMG/M
3300018475|Ga0187907_10020824All Organisms → cellular organisms → Bacteria14122Open in IMG/M
3300018475|Ga0187907_10025487All Organisms → cellular organisms → Bacteria12127Open in IMG/M
3300018475|Ga0187907_10045582All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis7766Open in IMG/M
3300018475|Ga0187907_10055289All Organisms → cellular organisms → Bacteria6714Open in IMG/M
3300018475|Ga0187907_10076748All Organisms → cellular organisms → Bacteria5254Open in IMG/M
3300018475|Ga0187907_10090196All Organisms → cellular organisms → Bacteria4661Open in IMG/M
3300018475|Ga0187907_10117112All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae3862Open in IMG/M
3300018475|Ga0187907_10152983All Organisms → cellular organisms → Bacteria3196Open in IMG/M
3300018475|Ga0187907_10196764All Organisms → cellular organisms → Bacteria2677Open in IMG/M
3300018475|Ga0187907_10370534All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis1728Open in IMG/M
3300018475|Ga0187907_10468912Not Available1471Open in IMG/M
3300018475|Ga0187907_12233965Not Available507Open in IMG/M
3300018493|Ga0187909_10002938All Organisms → cellular organisms → Bacteria45693Open in IMG/M
3300018493|Ga0187909_10009250All Organisms → cellular organisms → Bacteria22600Open in IMG/M
3300018493|Ga0187909_10015328All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae15677Open in IMG/M
3300018493|Ga0187909_10063508All Organisms → cellular organisms → Bacteria5390Open in IMG/M
3300018494|Ga0187911_10010550All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae22054Open in IMG/M
3300018494|Ga0187911_10031167All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis9915Open in IMG/M
3300018495|Ga0187908_10000766All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis88076Open in IMG/M
3300018495|Ga0187908_10024840All Organisms → cellular organisms → Bacteria12046Open in IMG/M
3300018495|Ga0187908_10086493All Organisms → cellular organisms → Bacteria4660Open in IMG/M
3300018495|Ga0187908_10302599All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae1918Open in IMG/M
3300018495|Ga0187908_11485452All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis652Open in IMG/M
3300018878|Ga0187910_10009880All Organisms → cellular organisms → Bacteria25424Open in IMG/M
3300018878|Ga0187910_10081175All Organisms → cellular organisms → Bacteria5420Open in IMG/M
3300018878|Ga0187910_10218660All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus2678Open in IMG/M
3300018878|Ga0187910_11178170Not Available854Open in IMG/M
3300022660|Ga0216342_10000455All Organisms → cellular organisms → Bacteria144296Open in IMG/M
3300022660|Ga0216342_10002009All Organisms → cellular organisms → Bacteria68527Open in IMG/M
3300022660|Ga0216342_10004687All Organisms → cellular organisms → Bacteria39040Open in IMG/M
3300022660|Ga0216342_10006639All Organisms → cellular organisms → Bacteria30057Open in IMG/M
3300022660|Ga0216342_10007231All Organisms → cellular organisms → Bacteria28063Open in IMG/M
3300022660|Ga0216342_10008213All Organisms → cellular organisms → Bacteria25423Open in IMG/M
3300022660|Ga0216342_10012378All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis18000Open in IMG/M
3300022660|Ga0216342_10014565All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae15664Open in IMG/M
3300022660|Ga0216342_10015020All Organisms → cellular organisms → Bacteria15283Open in IMG/M
3300022660|Ga0216342_10015550All Organisms → cellular organisms → Bacteria14845Open in IMG/M
3300022660|Ga0216342_10019467All Organisms → cellular organisms → Bacteria12207Open in IMG/M
3300022660|Ga0216342_10022386All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes10820Open in IMG/M
3300022660|Ga0216342_10053454All Organisms → cellular organisms → Bacteria5284Open in IMG/M
3300022660|Ga0216342_10077126All Organisms → cellular organisms → Bacteria3979Open in IMG/M
3300022660|Ga0216342_10304719Not Available1479Open in IMG/M
3300022660|Ga0216342_10339801Not Available1369Open in IMG/M
3300022660|Ga0216342_10349319Not Available1342Open in IMG/M
3300022661|Ga0216339_10005644All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae32506Open in IMG/M
3300022661|Ga0216339_10012510All Organisms → cellular organisms → Bacteria17322Open in IMG/M
3300022661|Ga0216339_10015048All Organisms → cellular organisms → Bacteria14829Open in IMG/M
3300022661|Ga0216339_10040228All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae6568Open in IMG/M
3300022661|Ga0216339_10075108Not Available4001Open in IMG/M
3300022661|Ga0216339_10086787All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis3584Open in IMG/M
3300022661|Ga0216339_10122684All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis2772Open in IMG/M
3300022661|Ga0216339_10210412All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae1897Open in IMG/M
3300022753|Ga0216341_10004129All Organisms → cellular organisms → Bacteria39082Open in IMG/M
3300022753|Ga0216341_10009894All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis19388Open in IMG/M
3300022753|Ga0216341_10011272All Organisms → cellular organisms → Bacteria17308Open in IMG/M
3300022753|Ga0216341_10017384All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae11985Open in IMG/M
3300022753|Ga0216341_10037198All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis6272Open in IMG/M
3300022753|Ga0216341_10044810All Organisms → cellular organisms → Bacteria5414Open in IMG/M
3300022753|Ga0216341_10046179All Organisms → cellular organisms → Bacteria5295Open in IMG/M
3300022753|Ga0216341_10069888All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae3872Open in IMG/M
3300022753|Ga0216341_10074947All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis3677Open in IMG/M
3300022753|Ga0216341_10283422Not Available1440Open in IMG/M
3300022753|Ga0216341_10548391All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae912Open in IMG/M
3300022753|Ga0216341_10664907Not Available797Open in IMG/M
3300023371|Ga0216340_10006633All Organisms → cellular organisms → Bacteria32133Open in IMG/M
3300023371|Ga0216340_10013197All Organisms → cellular organisms → Bacteria18666Open in IMG/M
3300023371|Ga0216340_10021797All Organisms → cellular organisms → Bacteria12262Open in IMG/M
3300023371|Ga0216340_10036938All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis7859Open in IMG/M
3300023371|Ga0216340_10058237All Organisms → cellular organisms → Bacteria5448Open in IMG/M
3300023371|Ga0216340_10755257Not Available882Open in IMG/M
3300023371|Ga0216340_10796732Not Available850Open in IMG/M
3300023371|Ga0216340_11064595Not Available694Open in IMG/M
3300024268|Ga0257090_10030961All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae9765Open in IMG/M
3300024268|Ga0257090_10038194All Organisms → cellular organisms → Bacteria8293Open in IMG/M
3300024268|Ga0257090_10079816All Organisms → cellular organisms → Bacteria4779Open in IMG/M
3300024269|Ga0257076_10030097All Organisms → cellular organisms → Bacteria9689Open in IMG/M
3300024269|Ga0257076_10062325All Organisms → cellular organisms → Bacteria5503Open in IMG/M
3300024269|Ga0257076_10177941All Organisms → cellular organisms → Bacteria2658Open in IMG/M
3300024270|Ga0257091_10004466All Organisms → cellular organisms → Bacteria45714Open in IMG/M
3300024270|Ga0257091_10017943All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae15686Open in IMG/M
3300024270|Ga0257091_10020296All Organisms → cellular organisms → Bacteria14199Open in IMG/M
3300024270|Ga0257091_10070871All Organisms → cellular organisms → Bacteria5283Open in IMG/M
3300024270|Ga0257091_10083872All Organisms → cellular organisms → Bacteria4675Open in IMG/M
3300024270|Ga0257091_10176307All Organisms → cellular organisms → Bacteria2793Open in IMG/M
3300024270|Ga0257091_10282542All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis2038Open in IMG/M
3300024270|Ga0257091_11639688Not Available637Open in IMG/M
3300024272|Ga0257077_10014688All Organisms → cellular organisms → Bacteria19169Open in IMG/M
3300024272|Ga0257077_10521048Not Available1457Open in IMG/M
3300024303|Ga0257089_10161402All Organisms → cellular organisms → Bacteria2673Open in IMG/M
3300024303|Ga0257089_10415077Not Available1445Open in IMG/M
3300029305|Ga0307249_10001187All Organisms → cellular organisms → Bacteria190237Open in IMG/M
3300029305|Ga0307249_10007178All Organisms → cellular organisms → Bacteria82662Open in IMG/M
3300029305|Ga0307249_10038109All Organisms → cellular organisms → Bacteria25519Open in IMG/M
3300029305|Ga0307249_10105808All Organisms → cellular organisms → Bacteria10159Open in IMG/M
3300029705|Ga0224414_10017096All Organisms → cellular organisms → Bacteria26036Open in IMG/M
3300031555|Ga0318466_10076831All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → unclassified Victivallales → Victivallales bacterium CCUG 4473013024Open in IMG/M
3300031555|Ga0318466_11992784Not Available804Open in IMG/M
3300032167|Ga0224413_10014863All Organisms → cellular organisms → Bacteria36957Open in IMG/M
3300032167|Ga0224413_10083982All Organisms → cellular organisms → Bacteria8081Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Goat FecesHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces100.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300018427Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 2, ChloramphenicolHost-AssociatedOpen in IMG/M
3300018430Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 2, ChloramphenicolHost-AssociatedOpen in IMG/M
3300018475Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 1Host-AssociatedOpen in IMG/M
3300018493Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 3Host-AssociatedOpen in IMG/M
3300018494Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 2Host-AssociatedOpen in IMG/M
3300018495Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 2Host-AssociatedOpen in IMG/M
3300018878Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 1Host-AssociatedOpen in IMG/M
3300022660Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 2 (v2)Host-AssociatedOpen in IMG/M
3300022661Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 2 (v2)Host-AssociatedOpen in IMG/M
3300022753Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 3 (v2)Host-AssociatedOpen in IMG/M
3300023371Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 1 (v2)Host-AssociatedOpen in IMG/M
3300024268Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 2 Spades (v3)Host-AssociatedOpen in IMG/M
3300024269Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 2 Spades (v3)Host-AssociatedOpen in IMG/M
3300024270Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 1 Spades (v3)Host-AssociatedOpen in IMG/M
3300024272Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 1 Spades (v3)Host-AssociatedOpen in IMG/M
3300024303Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 3 Spades (v3)Host-AssociatedOpen in IMG/M
3300029305Goal Fecal Pellet Co-assembly of all three pellet samples and three diluted pellet samples.Host-AssociatedOpen in IMG/M
3300029705Goat Fecal Pellets diluted in mediaHost-AssociatedOpen in IMG/M
3300031555Goal Fecal Pellet Co-assembly of all three pellet samples and three diluted pellet samples.(v2)Host-AssociatedOpen in IMG/M
3300032167Three Goat Fecal PelletsHost-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0187903_1122627823300018427Goat FecesGFAELFRSVCRNISGKLPSHAFAALTRLRIATPRQAGLCGVPPHELLASFIVLQNSE
Ga0187902_1109107713300018430Goat FecesPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLANFIVLQNSE
Ga0187907_100001141513300018475Goat FecesFRSVCRNISGKLPSHAFAALTGLCGVPPHDLLAGFIVLQN
Ga0187907_10002121543300018475Goat FecesISGKLPSHAFAALTGLCGVPPHELLASFIVLQNSE
Ga0187907_10002537463300018475Goat FecesVCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQNSE
Ga0187907_1000328213300018475Goat FecesKRRELRSSPFNFAELFRSVCRNISGKLLSHAFAALTALCGGTPHDLWASFIVLQNCKMP
Ga0187907_1000352413300018475Goat FecesSSPFNFAELFRSVCRNVSGKLLSHAFAALTGLCGVPPHKLSAGFIVLQNIE
Ga0187907_1000470713300018475Goat FecesNISGKLPSHAFAALTGLCGVPPHDLLAGFIVLQNS
Ga0187907_1000473413300018475Goat FecesELRSTPFGFAELFRSVCRNISGKLPSHAFAALTALCGVPPHKLLASFIVLQNSE
Ga0187907_10005452283300018475Goat FecesGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQN
Ga0187907_10009274283300018475Goat FecesSPFNFAELFRSVCRNVSGKLLSHAFAALTALCGVPPHDLLASFIVLQNSE
Ga0187907_10011038183300018475Goat FecesRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQN
Ga0187907_10012010203300018475Goat FecesSSPFNFAELFRSVCRNVSGKLLSHAFAALTALCGVPPHKLLASFIVLQNLKQFCSTLF
Ga0187907_10012166193300018475Goat FecesAELFRSVCRNVSGKLLSHAFAALTALCGVPPHELLASFIVLQNSE
Ga0187907_1001308713300018475Goat FecesSPFNFAELFRSVCRNVSGKLLSHAFAALAALCGVPPHDLLAGFIVLQNS
Ga0187907_10018365133300018475Goat FecesSSPFNFAELFRSVCRNVSGKLLSHAFAALTGLCGVPPHKLLASFIVLQNSE
Ga0187907_10019501153300018475Goat FecesFNFAELFRSVCRNVSGKLLSHAFAALAALCGVPPHDLLAGFIVLQNS
Ga0187907_10020824143300018475Goat FecesPFGFAELFRSVCRNISGKLPSHAFAALTALCGVPPHELLANFIVLQNSE
Ga0187907_1002548713300018475Goat FecesKIRKSSLKRRELRSSPFNFAELFRSVCRNISGKLLSHAFAALTGLCGVPPHKLLASFIVLQNSE
Ga0187907_1004558213300018475Goat FecesKRRELRSSPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVSPHELRVNNIVLQN
Ga0187907_1005528963300018475Goat FecesLPYQLLRLHRKSSLKRRELRSTPFGFAELFRSVCRNISGKLPSHTFAALTGLCGVPPHELLASFIVLQNSE
Ga0187907_1007674813300018475Goat FecesSPFNFAELFRSVCRNVSGKLLSHAFAALTALCGVPPHDLLAGFIVLQN
Ga0187907_1009019673300018475Goat FecesCRNISGKLPSHAFAALTGLCGVPPHKLLASFIVLQNSE
Ga0187907_1011711233300018475Goat FecesNISGKLPSHAFAALTGLCGVPPHKLLASFIVLQNSE
Ga0187907_1015298313300018475Goat FecesSTPVSFAEHFRSVCRNVSGKLPSHAFAGLTALRGVPPRELLANNINSFATGH
Ga0187907_1019676443300018475Goat FecesGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFSVLQKSE
Ga0187907_1037053413300018475Goat FecesRRELRSTPFGFAALFRSVCRNISGKLPPHTSAALTGLCGVPPHELLASFIVLQNSE
Ga0187907_1046891223300018475Goat FecesSPFNFAELFRSVCRNVSGKLLSHAFAALTGLCGVPPHDLLATFIVLQNSYEFYNTP
Ga0187907_1223396513300018475Goat FecesFNFAELFRSVCRNVSGKLLSHAFAALAALCGVPPHDLLAGFVVLPNS
Ga0187909_1000293813300018493Goat FecesPFNFAELFRSVCRNVSGKLLSHAFAALTGLCGVPPHKLSAGFIVLQNIE
Ga0187909_10009250183300018493Goat FecesFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQN
Ga0187909_1001532813300018493Goat FecesSPFNFAELFRSVCRNVSGKLLSHAFAALTGLCGVPPHKLLASFIVLQNSE
Ga0187909_1006350813300018493Goat FecesNISGKLPSHAFAALTGLCGVPPHELLASFIVLQNSE
Ga0187911_10010550213300018494Goat FecesELRSSPFNFAELFRSVCRNVSGKLLSHAFAALTALCGVPPHKLLASFIVLQNLKQFCSTL
Ga0187911_1003116793300018494Goat FecesFRSVCRNISGKLPSHAFAALTGLCGVPPHDLLAGFIVLQNS
Ga0187908_10000766793300018495Goat FecesELRSTPFGFAELFRSVCRNISGKLPSHAFAALTALCGVPPHELLANFIVLQNSE
Ga0187908_1002484013300018495Goat FecesRNISGKLLSHAFAALTGLCGVPPHKLLASFIVLQNSE
Ga0187908_1008649373300018495Goat FecesRNISGKLPSHAFAALTGLCGVPPHKLLASFIVLQNSE
Ga0187908_1030259923300018495Goat FecesLHRKSSLKRRELRSTPFGFAELFRSVCRNISGKLPSHTFAALTGLCGVPPHELLASFIVLQNSE
Ga0187908_1148545223300018495Goat FecesSTPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHGLLASFIVLQNSQSFATLFFIR
Ga0187910_10009880283300018878Goat FecesLRSSPFNFAELFRSVCRNVSGKLLSHAFAALTALCGVPPHDLLASFIVLQNSE
Ga0187910_1008117513300018878Goat FecesLFRSVCRNVSGKLLSHAFAALTALCGVPPHDLLAGFIVLQN
Ga0187910_1021866013300018878Goat FecesTPFGFAELFRSVCRNISGKLPSHTFAALTGLCGVPPHELLASFIVLQNSE
Ga0187910_1117817023300018878Goat FecesSTPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHGLLASFIVLQNSE
Ga0216342_1000045513300022660Goat FecesRSVCRNISGKLPSHAFAALTGLCGVPPHDLLAGFIVLQN
Ga0216342_10002009643300022660Goat FecesPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQN
Ga0216342_1000468713300022660Goat FecesELRSSPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHDLLAGFIVLQNS
Ga0216342_10006639273300022660Goat FecesKIRKSSLKRRELRSSPFNFAELFRSVCRNVSGKLLSHAFAALTGLCGVPPHKLSAGFIVLQNIE
Ga0216342_1000723113300022660Goat FecesELFRSVCRNVSGKLPSHAFAALTALCGVPPHDLLAGFIVLQNS
Ga0216342_10008213283300022660Goat FecesSSPFNFAELFRSVCRNVSGKLLSHAFAALTALCGVPPHDLLASFIVLQNSE
Ga0216342_10012378233300022660Goat FecesLKRRELRSSPFNFAELFRSVCRNVSGKLLSHAFAALTALCGVSPHDLLAGVIVLQNSHEFCNTLKSLKNSDLRDWL
Ga0216342_1001456513300022660Goat FecesLRSSPFNFAELFRSVCRNVSGKLLSHAFAALTGLCGVPPHKLLASFIVLQNSE
Ga0216342_1001502013300022660Goat FecesRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQNSE
Ga0216342_1001555013300022660Goat FecesRIFRKSSLKRRELRSSPFNFAELFRSVCRNVSGKLLSHAFAALAALCGVPPHDLLAGFIVLQNS
Ga0216342_1001946793300022660Goat FecesSPFNFAELFRSVCRNISGKLLSHAFAALTGLCGVPPHKLLASFIVLQNSE
Ga0216342_1002238613300022660Goat FecesSSPFNFAELFRSVCRNVSGKLLSHAFAALAALCGVPPHDLLAGFIVLQNS
Ga0216342_1005345413300022660Goat FecesELRSSPFNFAELFRSVCRNVSGKLLSHAFAALTALCGVPPHDLLAGFIVLQN
Ga0216342_1007712643300022660Goat FecesHRKSSLKRRELRSTPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQNSE
Ga0216342_1030471923300022660Goat FecesSSPFNFAELFRSVCRNVSGKLLSHAFAALTGLCGVPPHDLLATFIVLQNSYEFYNTP
Ga0216342_1033980123300022660Goat FecesPCPYQLLRIFRKSSLKRRELRSSPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQNSE
Ga0216342_1034931933300022660Goat FecesPFNFAELFRSVCRNVSGKLLSHAFAALAALCGVPPHDLLAGFVVLPNS
Ga0216339_10005644263300022661Goat FecesRELRSSPFNFAELFRSVCRNVSGKLLSHAFAALTALCGVPPHKLLASFIVLQNLKQFCSTLF
Ga0216339_10012510153300022661Goat FecesLRSSPFNFAELFRSVCRNVSGKLLSHAFAALTGLCGVPPHKLSAGFIVLQNIE
Ga0216339_10015048153300022661Goat FecesPFNFAELFRSVCRNVSGKLLSHAFAALAALCGVPPHDLLAGFIVLQNS
Ga0216339_1003650013300022661Goat FecesELRSSPFNFAELFRSVCRNVSGKLLSHAFAALAALCGVPPHELLAGFIVLQNSHEFCNTPSYFLW
Ga0216339_1004022853300022661Goat FecesRELRSTPFGFAELFRSVCRNISGKLPSHAFAALTALCGVPPHKLLASFIVLQNSE
Ga0216339_1007510813300022661Goat FecesSTPFGFAELFRSVCRNISGKLPSHAFAALTALCGVPPHELLANFIVLQNSE
Ga0216339_1008678713300022661Goat FecesLFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQN
Ga0216339_1012268413300022661Goat FecesLKRRELRSSPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVSPHELRVNNIVLQN
Ga0216339_1021041213300022661Goat FecesPLPYQLLRLHRKSSLKRRELRSTPFGFAELFRSVCRNISGKLPSHTFAALTGLCGVPPHELLASFIVLQNSE
Ga0216341_10004129293300022753Goat FecesELFRSVCRNISGKLPSHAFAALTGLCGVPPHDLLAGFIVLQNS
Ga0216341_1000989413300022753Goat FecesELRSSPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQN
Ga0216341_10011272173300022753Goat FecesELRSSPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHDLLAGFIVLQN
Ga0216341_10017384103300022753Goat FecesLRSSPFNFAELFRSVCRNVSGKLLSHAFAALTALCGVPPHKLLASFIVLQNLKQFCSTLF
Ga0216341_1003719873300022753Goat FecesELFRSVCRNVSGKLPSHAFAALTALCGVPPHDLLAGFIVLQNL
Ga0216341_1004481063300022753Goat FecesELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQNSE
Ga0216341_1004617973300022753Goat FecesSSPFNFAELFRSVCRNVSGKLLSHAFAALTALCGVPPHDLLAGFIVLQN
Ga0216341_1006988833300022753Goat FecesRELRSTPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHKLLASFIVLQNSE
Ga0216341_1007494743300022753Goat FecesCRNISGKLPSHAFAALTGLCGVPPHDLLAGFIVLQNS
Ga0216341_1028342223300022753Goat FecesELFRSVCRNVSGKLLSHAFAALTGLCGVPPHDLLATFIVLQNSYEFYNTP
Ga0216341_1054839113300022753Goat FecesLKRRELRSSPFGFAELFRSVCRNVSGKLLSHAFAALTALCGVPPHELLASFIVLQNSE
Ga0216341_1066490713300022753Goat FecesELRSSPFNFAELFRSVCRNVSGKLLSHAFAALAALCGVPPHDLLAGFVVLPNS
Ga0216340_10006633273300023371Goat FecesRSSPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQN
Ga0216340_1001319713300023371Goat FecesRELRSSPFNFAELFRSVCRNVSGKLLSHAFAALTALCGVPPHDLLASFIVLQNSE
Ga0216340_1002179713300023371Goat FecesRKIRKSSLKRRELRSSPFNFAELFRSVCRNISGKLLSHAFAALTGLCGVPPHKLLASFIVLQNSE
Ga0216340_1003693813300023371Goat FecesPFGFAELFRSVCRNVSGKLPSHAFAALTALCGVPPHDLLAGFIVLQNS
Ga0216340_1005823713300023371Goat FecesFRSVCRNVSGKLLSHAFAALTALCGVPPHDLLAGFIVLQN
Ga0216340_1075525713300023371Goat FecesRKSSLKRRELRSTPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQNSE
Ga0216340_1079673213300023371Goat FecesEPFRSVCRNISGKLPSHPFAALTRLRIATPRQAGLCGVPPHELLASFIVLQNSE
Ga0216340_1106459513300023371Goat FecesSTPFGFAELFRSVCRNISGKLPSHTFAALTGLCGVPPHELLASFIVLQNSE
Ga0257090_1003096113300024268Goat FecesRSSPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFSVLQKSE
Ga0257090_1003819453300024268Goat FecesHRKSSLKRRELRSTPFGFAELFRSVCRNISGKLPSHAFAALTRLRIATPRQAGLCGVPPHELLASFIVLQNSE
Ga0257090_1007981643300024268Goat FecesCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQNSE
Ga0257076_1003009783300024269Goat FecesTPFGFAELFRSVCRNISGKLPSHAFAALTALCGVPPHELLANFIVLQNSE
Ga0257076_1006232563300024269Goat FecesKRALPCPYQLLRKIRKSSLKRRELRSSPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQNSE
Ga0257076_1017794113300024269Goat FecesSVCRNISGKLPSHAFAALTGLCGVPPHELLASFSVLQKSE
Ga0257091_10004466383300024270Goat FecesRELRSSPFNFAELFRSVCRNVSGKLLSHAFAALTGLCGVPPHKLSAGFIVLQNIE
Ga0257091_1001794313300024270Goat FecesRSSPFNFAELFRSVCRNVSGKLLSHAFAALTGLCGVPPHKLLASFIVLQNSE
Ga0257091_1002029613300024270Goat FecesGFAELFRSVCRNISGKLPSHAFAALTALCGVPPHELLANFIVLQNSE
Ga0257091_1007087113300024270Goat FecesRELRSSPFNFAELFRSVCRNVSGKLLSHAFAALTALCGVPPHDLLAGFIVLQN
Ga0257091_1008387273300024270Goat FecesVCRNISGKLPSHAFAALTGLCGVPPHKLLASFIVLQNSE
Ga0257091_1017630733300024270Goat FecesPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFSVLQKSE
Ga0257091_1028254233300024270Goat FecesISGKLPSHTFAALTGLCGVPPHELLASFIVLQNSE
Ga0257091_1163968813300024270Goat FecesCWNISGKLPSHAFAALTGLCGVPPHELLASFIVLQNSE
Ga0257077_1001468813300024272Goat FecesRLHRKSSLKRRELRSTPFGFAELFRSVCRNISGKLPSHAFAALTALCGVPPHELLANFIVLQNSE
Ga0257077_1052104813300024272Goat FecesPFNFAELFRSVCRNVSGKLLSHAFAALTGLCGVPPHDLLATFIVLQNSYEFYNTP
Ga0257089_1016140233300024303Goat FecesAELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFSVLQKSE
Ga0257089_1041507713300024303Goat FecesFAELFRSVCRNVSGKLLSHAFAALTGLCGVPPHDLLATFIVLQNSYEFYNTP
Ga0307249_100011871693300029305Goat FecesELFRSVCRNISGKLPSHAFAALTGLCGVPPHDLLAGFIVLQN
Ga0307249_1000717813300029305Goat FecesSVCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQNSE
Ga0307249_10038109183300029305Goat FecesRNISGKLPSHAFAALTGLCGVPPHGLLASFIVLQNSQSFATLFFIR
Ga0307249_10105808103300029305Goat FecesNISGKLPSHAFAALTGLCGVPPHGLLASFIVLQNSE
Ga0224414_10017096283300029705Goat FecesELRSSPFNFAELFRSVCRNVSGKLLSHAFAALTALCGVPPHDLLASFIVLQNSE
Ga0318466_1007683113300031555Goat FecesELRSTPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHGLLASFIVLQNSQSFATLFFIR
Ga0318466_1199278423300031555Goat FecesRNISGKLPSHAFAALTRLRIATPRQAGLCGVPPHELLASFIVLQNSE
Ga0224413_1001486313300032167Goat FecesSLKRRELRSTPFGFAELFRSVCRNISGKLPSHAFAALTGLCGVPPHELLASFIVLQNSE
Ga0224413_10083982113300032167Goat FecesAELFRSVCRNISGKLPSHTFAALTGLCGVPPHELLASFIVLQNSE

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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