Metagenome / Metatranscriptome Family F076637

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076637
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	42 residues
Representative Sequence	MRRKVANYKRFRELVNEWVDLEVERERAEREKEKQAGGH
Number of Associated Samples	89
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	16.52 %
% of genes near scaffold ends (potentially truncated)	79.66 %
% of genes from short scaffolds (< 2000 bps)	87.29 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.525 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (27.119 % of family members)
Environment Ontology (ENVO)	Unclassified (66.102 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (49.153 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.73% β-sheet: 0.00% Coil/Unstructured: 46.27%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF13007	LZ_Tnp_IS66	66.95
PF13817	DDE_Tnp_IS66_C	12.71
PF00248	Aldo_ket_red	0.85
PF01420	Methylase_S	0.85
PF00916	Sulfate_transp	0.85
PF13353	Fer4_12	0.85
PF05717	TnpB_IS66	0.85
PF13358	DDE_3	0.85
PF03050	DDE_Tnp_IS66	0.85
PF00459	Inositol_P	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG3436	Transposase	Mobilome: prophages, transposons [X]	1.69
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.85
COG0732	Restriction endonuclease S subunit	Defense mechanisms [V]	0.85
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.85
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.53 %
Unclassified	root	N/A	8.47 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.53 %
Unclassified	root	N/A	8.47 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.53 %
Unclassified	root	N/A	8.47 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	83.05 %
Unclassified	root	N/A	8.47 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.54 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	76.27 %
Unclassified	root	N/A	8.47 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.54 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	47.46 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	28.81 %
Unclassified	root	N/A	8.47 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	47.46 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	28.81 %
Unclassified	root	N/A	8.47 %
Isosphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	47.46 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	28.81 %
Unclassified	root	N/A	8.47 %
Isosphaeraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	47.46 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	28.81 %
Unclassified	root	N/A	8.47 %
Singulisphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	47.46 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	28.81 %
Unclassified	root	N/A	8.47 %
unclassified Singulisphaera	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → unclassified Singulisphaera	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	47.46 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	28.81 %
Unclassified	root	N/A	8.47 %
Singulisphaera sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → unclassified Singulisphaera → Singulisphaera sp.	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10019599	All Organisms → cellular organisms → Bacteria	4214	Open in IMG/M
3300001372\|YBBDRAFT_1048176	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	597	Open in IMG/M
3300001533\|MLSed_10140877	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1038	Open in IMG/M
3300005586\|Ga0066691_10922564	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	514	Open in IMG/M
3300009167\|Ga0113563_12284654	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	650	Open in IMG/M
3300009518\|Ga0116128_1028684	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1856	Open in IMG/M
3300009519\|Ga0116108_1016525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2606	Open in IMG/M
3300009552\|Ga0116138_1089639	Not Available	856	Open in IMG/M
3300009629\|Ga0116119_1137413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	611	Open in IMG/M
3300009636\|Ga0116112_1049376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1252	Open in IMG/M
3300009764\|Ga0116134_1052749	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1550	Open in IMG/M
3300009824\|Ga0116219_10763381	Not Available	528	Open in IMG/M
3300012964\|Ga0153916_11216299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	832	Open in IMG/M
3300014151\|Ga0181539_1036010	All Organisms → cellular organisms → Bacteria	2479	Open in IMG/M
3300014151\|Ga0181539_1061834	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1702	Open in IMG/M
3300014151\|Ga0181539_1241648	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300014153\|Ga0181527_1157546	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	986	Open in IMG/M
3300014153\|Ga0181527_1268848	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	681	Open in IMG/M
3300014155\|Ga0181524_10095475	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1677	Open in IMG/M
3300014156\|Ga0181518_10275022	Not Available	847	Open in IMG/M
3300014158\|Ga0181521_10127592	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1503	Open in IMG/M
3300014158\|Ga0181521_10591259	Not Available	521	Open in IMG/M
3300014160\|Ga0181517_10299018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	846	Open in IMG/M
3300014200\|Ga0181526_10605385	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300014200\|Ga0181526_11054018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	511	Open in IMG/M
3300014490\|Ga0182010_10907678	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	503	Open in IMG/M
3300014839\|Ga0182027_11322030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	718	Open in IMG/M
3300017823\|Ga0187818_10109433	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1197	Open in IMG/M
3300017925\|Ga0187856_1267464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	598	Open in IMG/M
3300017929\|Ga0187849_1264269	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	652	Open in IMG/M
3300017931\|Ga0187877_1101902	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1198	Open in IMG/M
3300017931\|Ga0187877_1313075	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	599	Open in IMG/M
3300017934\|Ga0187803_10315792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	625	Open in IMG/M
3300017935\|Ga0187848_10053452	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1934	Open in IMG/M
3300017938\|Ga0187854_10197223	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	891	Open in IMG/M
3300017940\|Ga0187853_10464404	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	555	Open in IMG/M
3300017941\|Ga0187850_10196607	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	925	Open in IMG/M
3300017941\|Ga0187850_10268383	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300017942\|Ga0187808_10165583	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	977	Open in IMG/M
3300017943\|Ga0187819_10169723	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1295	Open in IMG/M
3300017946\|Ga0187879_10140296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1371	Open in IMG/M
3300017946\|Ga0187879_10342531	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300017946\|Ga0187879_10390637	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	771	Open in IMG/M
3300017955\|Ga0187817_10551761	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300017975\|Ga0187782_10331517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1150	Open in IMG/M
3300017975\|Ga0187782_10702350	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M
3300018002\|Ga0187868_1110639	All Organisms → cellular organisms → Bacteria	1046	Open in IMG/M
3300018003\|Ga0187876_1119842	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	951	Open in IMG/M
3300018008\|Ga0187888_1212853	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	763	Open in IMG/M
3300018009\|Ga0187884_10390130	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	560	Open in IMG/M
3300018013\|Ga0187873_1143303	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	917	Open in IMG/M
3300018013\|Ga0187873_1343872	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	545	Open in IMG/M
3300018014\|Ga0187860_1216562	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	776	Open in IMG/M
3300018014\|Ga0187860_1396278	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	518	Open in IMG/M
3300018015\|Ga0187866_1205297	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300018016\|Ga0187880_1241979	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	799	Open in IMG/M
3300018016\|Ga0187880_1347536	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	630	Open in IMG/M
3300018019\|Ga0187874_10259067	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300018020\|Ga0187861_10059285	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1957	Open in IMG/M
3300018020\|Ga0187861_10097926	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1420	Open in IMG/M
3300018020\|Ga0187861_10153461	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1061	Open in IMG/M
3300018020\|Ga0187861_10426089	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
3300018024\|Ga0187881_10255584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
3300018043\|Ga0187887_10022367	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4057	Open in IMG/M
3300018057\|Ga0187858_10599480	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	664	Open in IMG/M
3300018058\|Ga0187766_11365742	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	519	Open in IMG/M
3300018062\|Ga0187784_10952574	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	683	Open in IMG/M
3300018085\|Ga0187772_11066539	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	592	Open in IMG/M
3300018088\|Ga0187771_10853836	All Organisms → cellular organisms → Bacteria → Acidobacteria	772	Open in IMG/M
3300018088\|Ga0187771_11860632	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300018090\|Ga0187770_11802954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	501	Open in IMG/M
3300019788\|Ga0182028_1432975	All Organisms → cellular organisms → Bacteria	2309	Open in IMG/M
3300021861\|Ga0213853_11002340	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1007	Open in IMG/M
3300023088\|Ga0224555_1225904	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	503	Open in IMG/M
3300025444\|Ga0208189_1010231	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2306	Open in IMG/M
3300025464\|Ga0208076_1091536	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300025506\|Ga0208937_1046871	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1022	Open in IMG/M
3300027662\|Ga0208565_1086945	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	952	Open in IMG/M
3300027696\|Ga0208696_1265966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	530	Open in IMG/M
(restricted) 3300027995\|Ga0233418_10169662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	704	Open in IMG/M
(restricted) 3300027995\|Ga0233418_10248490	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	603	Open in IMG/M
3300030503\|Ga0311370_11639665	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	663	Open in IMG/M
3300030707\|Ga0310038_10042761	All Organisms → cellular organisms → Bacteria	2608	Open in IMG/M
3300031708\|Ga0310686_107179596	All Organisms → cellular organisms → Bacteria → Acidobacteria	2058	Open in IMG/M
3300031834\|Ga0315290_10227310	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1626	Open in IMG/M
3300031965\|Ga0326597_10437210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1443	Open in IMG/M
3300032046\|Ga0315289_11545335	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	503	Open in IMG/M
3300032118\|Ga0315277_11306481	All Organisms → cellular organisms → Bacteria → Acidobacteria	635	Open in IMG/M
3300032160\|Ga0311301_11616322	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	787	Open in IMG/M
3300032160\|Ga0311301_13002996	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	507	Open in IMG/M
3300032163\|Ga0315281_10429024	Not Available	1419	Open in IMG/M
3300032163\|Ga0315281_11298275	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300032173\|Ga0315268_10607302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1086	Open in IMG/M
3300032805\|Ga0335078_10695658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1260	Open in IMG/M
3300032805\|Ga0335078_11755505	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	677	Open in IMG/M
3300032805\|Ga0335078_12615468	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	517	Open in IMG/M
3300032828\|Ga0335080_10580637	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1181	Open in IMG/M
3300032892\|Ga0335081_11646752	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → unclassified Singulisphaera → Singulisphaera sp.	702	Open in IMG/M
3300033158\|Ga0335077_10609980	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1137	Open in IMG/M
3300033402\|Ga0326728_10107264	All Organisms → cellular organisms → Bacteria → Acidobacteria	3315	Open in IMG/M
3300033402\|Ga0326728_10228249	All Organisms → cellular organisms → Bacteria	1816	Open in IMG/M
3300033402\|Ga0326728_10239251	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1750	Open in IMG/M
3300033405\|Ga0326727_10083959	All Organisms → cellular organisms → Bacteria	4397	Open in IMG/M
3300033405\|Ga0326727_10993871	Not Available	613	Open in IMG/M
3300033405\|Ga0326727_11158410	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	543	Open in IMG/M
3300033414\|Ga0316619_10308344	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1211	Open in IMG/M
3300033482\|Ga0316627_101970258	All Organisms → cellular organisms → Bacteria → Acidobacteria	605	Open in IMG/M
3300033513\|Ga0316628_103295909	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	586	Open in IMG/M
3300033755\|Ga0371489_0000151	All Organisms → cellular organisms → Bacteria → Acidobacteria	135167	Open in IMG/M
3300033755\|Ga0371489_0010884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8329	Open in IMG/M
3300033755\|Ga0371489_0243177	Not Available	901	Open in IMG/M
3300033891\|Ga0334811_174020	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	526	Open in IMG/M
3300033977\|Ga0314861_0512917	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	513	Open in IMG/M
3300034078\|Ga0373900_021676	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1060	Open in IMG/M
3300034088\|Ga0373912_0219857	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	527	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.31%
Engineered	Engineered	1.69%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	61.02%
Terrestrial	Environmental → Terrestrial	37.29%
Bioremediation	Engineered → Bioremediation	1.69%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	59.32%
Soil	Environmental → Terrestrial → Soil	27.12%
Peat	Environmental → Terrestrial → Peat	10.17%
Marine	Environmental → Aquatic → Marine	1.69%
Metal	Engineered → Bioremediation → Metal	1.69%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	50.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	17.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	9.32%
Lake	Environmental → Aquatic → Freshwater → Lake	6.78%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	1.69%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.85%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.85%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.85%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	37.29%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	15.25%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.17%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	8.47%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.63%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	6.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.08%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.54%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.85%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.85%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.85%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	27.12%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	10.17%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	7.63%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	7.63%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	6.78%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	6.78%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.78%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.93%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.08%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	2.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.69%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.69%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	1.69%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.85%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.85%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.85%
Benthic	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic	0.85%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine	0.85%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Sediment	0.85%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.85%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.85%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001372	YB-Back-sed	Environmental	Open in IMG/M
3300001533	Benthic freshwater microbial communities from British Columbia, Canada	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009629	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100	Environmental	Open in IMG/M
3300009636	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019788	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023088	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34	Environmental	Open in IMG/M
3300025444	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40 (SPAdes)	Environmental	Open in IMG/M
3300025464	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025506	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40 (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027995 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_1_MG	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental	Open in IMG/M
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M
3300033891	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-D	Environmental	Open in IMG/M
3300033977	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75	Environmental	Open in IMG/M
3300034078	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A0.1	Engineered	Open in IMG/M
3300034088	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B5A4.1	Engineered	Open in IMG/M
3300034782	Sediment microbial communities from coastal wetland in Texas, United States - D0606M02	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100195991	3300000567	Peatlands Soil	GEPMRRKVANYRRLRELVNEWVALEIERERAERAREKHAGGN*
YBBDRAFT_10481762	3300001372	Marine Estuarine	KVRNYKRFRELVNEWVGLAVELERAERAATKQNHGD*
MLSed_101408771	3300001533	Benthic	AMREKLATYKRLRELVNEWVDLALEHEALARAAGKGKR*
Ga0066691_109225641	3300005586	Soil	QVEPMRQKVANYKRLRELVHEWVNLEIERERAERAKEKHLGGN*
Ga0113563_122846541	3300009167	Freshwater Wetlands	VRPDQVAGVREKVANYKRFRELINEWVDLAVELERAERAQARKSHAD*
Ga0116128_10286842	3300009518	Peatland	MRQKVANYKRLRELMNEWVSLGVELERAERAEEKHARGH*
Ga0116108_10165251	3300009519	Peatland	VEPMRRKVANYKRLRELVNAWVALEIERERAKREKEKRAGGD*
Ga0116138_10896391	3300009552	Peatland	SSRFVRPAQVAEMRRKVENYKRFRELVNEWVDLAVERERAERAAREPHAGD*
Ga0116119_11374132	3300009629	Peatland	EGMQRKVANYKRFRELVNEWVDLEVEREQAERGQEKHAGGN*
Ga0116112_10493762	3300009636	Peatland	VANYKRFRELVNEWVDLEVEREQVERAQEKNVGGN*
Ga0116134_10527492	3300009764	Peatland	ANYKRLRELMNEWVSLGVELERAEREKERHAGGH*
Ga0116219_107633811	3300009824	Peatlands Soil	RKVANYKRFRELVNEWVDLEVERERAERAQEKRAGGN*
Ga0153916_112162991	3300012964	Freshwater Wetlands	IRRKVENYKRFRELVNEWVDLAVEQERAPSKQRHGD*
Ga0181539_10360104	3300014151	Bog	QVAEMRRKVARYKRFRKLVNQWVDLEVERERAERAQEKRAGGN*
Ga0181539_10618341	3300014151	Bog	QKVANYKRLRELMNEWVSLAVERERAERAEEKHHRGD*
Ga0181539_12416481	3300014151	Bog	RKVANYKRFRELVNDWVDLEVERERAEREKERQAGGH*
Ga0181527_11575461	3300014153	Bog	QKVANYKRLRELMKEWVSLGVELERAEREKEKHASGH*
Ga0181527_12688482	3300014153	Bog	RFVRPEQVAEMRRKVARYKRFRKLVNQWVDLEVERERAEREKERRGGGD*
Ga0181524_100954752	3300014155	Bog	PEHVTEMRQKVAHYKRFRELVNEWVDLEVERERAEREKERHARGD*
Ga0181518_102750221	3300014156	Bog	MRRRVARYKRFRELVNRWVDLEVEREGVEREREKRAAGH*
Ga0181521_101275921	3300014158	Bog	ANYKRFWELVNEWVDLEVEREQAERAEEKHAGGN*
Ga0181521_105912592	3300014158	Bog	ANYKRFRELVNEWVDLEVERERAERQKEKHTGGH*
Ga0181517_102990182	3300014160	Bog	MQRKVANYKRFRELVNDWVDLEVERERAEREKERQAGGH*
Ga0181526_106053852	3300014200	Bog	QKVANYKRFRELVNEWVDLEVEREQAERAQEKHAGGN*
Ga0181526_110540181	3300014200	Bog	GTQQKVANYKRFRELVNEWVGLEVERERAERAQEKHAGGN*
Ga0182010_109076782	3300014490	Fen	VTEMRHKVENYKRFRELVNQWVDLTVELERAERATSKQHHGD*
Ga0182027_113220301	3300014839	Fen	EQVEGMQRKVANYKRFRELVNEWVDLEVEREQVERGQEKHAGGN*
Ga0187818_101094331	3300017823	Freshwater Sediment	QVEPMRRKVASYKRLRELVNEWVALEIERERAEREKEKRAGGN
Ga0187856_12674641	3300017925	Peatland	QVEPMRQKVANYKRLRELMNEWVSLGVELERAEREKEKHTGGH
Ga0187849_12642691	3300017929	Peatland	MQWKVANYKRFRELVNEWVDLEVEREQAERGQEKHAGGN
Ga0187877_11019021	3300017931	Peatland	MRRKVARYKRFRELVNQWVDLEVERERAEREKERRAGGD
Ga0187877_13130751	3300017931	Peatland	GMQRKVANYKRFRELVNEWVVLEVEREQAERGQEKHAGGN
Ga0187803_103157921	3300017934	Freshwater Sediment	VEPMRQKVANYKRLRELMNEGVSLGVELERAERGLAKERDGD
Ga0187848_100534521	3300017935	Peatland	PEQVEPMRQKVANYKRLRELMNEWVSLGVELERAEREKEKHTGGH
Ga0187854_101972232	3300017938	Peatland	MRQKVATYKRLRELVNQWVELAVELERAERAEAKHSDGH
Ga0187853_104644041	3300017940	Peatland	RVAEMRRKVANYKRFRELVNQWVDLAVEQERAERVQEKYSDGD
Ga0187850_101966072	3300017941	Peatland	FLRPEQVEPMRRKVANYRRLREVVNEWVALEIERERAEREKEKRGGGD
Ga0187850_102683832	3300017941	Peatland	KVANYKRLRELVNEWVELAIELEKAERAAAKQGHGD
Ga0187808_101655831	3300017942	Freshwater Sediment	GKSTTRFVRPEHVSEMRQKVARYKRFRELVNEWVDLEVERERAEREKERHAGGH
Ga0187808_102965151	3300017942	Freshwater Sediment	SYTWRGKSTTRFVRPEQVDPMQRKVANYKRFRELVNDWVDLEVERERVEWERERQAGGH
Ga0187819_101697232	3300017943	Freshwater Sediment	TEMRQKVARYKRFRELVNEWVDLEVERERAEREKERHARGD
Ga0187879_101402962	3300017946	Peatland	RQKVANYKRLRELMNEWVSLGVELERAEREKERHAGGH
Ga0187879_103425311	3300017946	Peatland	VEGMQRKVANYKRFRGLVNEWVDLEVEREQVERAQEKNVGGN
Ga0187879_103906372	3300017946	Peatland	QRKVANYKRFRELVNEWVDLEVEREQAERAEEKHAGGN
Ga0187817_105517612	3300017955	Freshwater Sediment	RRKVASYKRLRELVNEWVALEIERERAEREKEKRAGGN
Ga0187782_103315171	3300017975	Tropical Peatland	EMRQKVARYKRFRELVNEWVDLEVERERAEREKERHAGGH
Ga0187782_107023501	3300017975	Tropical Peatland	MRQKVARYKRFRELVNEWVDLEVERERAEREKERHAGGH
Ga0187870_10275581	3300017998	Peatland	STTRFVRPEHVAEMRRKVANYKRFRELVNAWVDLEVARERAERAKEKHPSGY
Ga0187868_11106393	3300018002	Peatland	EMRRKVANYKRFRELVNQWVDLAVEQERAERVQEKYSDGD
Ga0187876_11198422	3300018003	Peatland	LRPEQVEPMRRKVANYKRLRELVNEWVALEIERERAERAKEKRAGGD
Ga0187888_12128531	3300018008	Peatland	PQRVAEMRRKVANYKRFRELVNQWVDLAVEQERAERVQEKYSDGD
Ga0187884_103901301	3300018009	Peatland	RGKVENYKRFRGLVNEWVDLAVELEQAERATSKQLHGD
Ga0187873_11433031	3300018013	Peatland	LRPEQVEPMRRKVANYRRLRELVNEWVALEIERERAERAREKHAGGN
Ga0187873_13438722	3300018013	Peatland	AEMRRKVANYKRFRELVNQWVDMAVEQERAERVQEKYRDGD
Ga0187860_12165621	3300018014	Peatland	KSSSRFVRPQRVAEMRRKVANYKRFRELVNQWVDLAVEQERAERVQEKYSDGD
Ga0187860_13962781	3300018014	Peatland	QRLAEMRRKVANYKRFRELVNQWVDMAVEQERAERVQEKYRDGD
Ga0187866_12052971	3300018015	Peatland	TWRGKSMTRFVRREHVAEMQQKVANYQRFRELVNAWVDLEVERERAERAQEKRTGGN
Ga0187880_12419792	3300018016	Peatland	QKVTNYKRFRELVNEWVDLEVERERAEREKERHAGGH
Ga0187880_13475362	3300018016	Peatland	VRPQRLAEMRRKVANYKRFRELVNQWVDLAVEQERAERVQEKYSDGD
Ga0187874_102590672	3300018019	Peatland	VEGMQRKVANYKRFRELVNEWVDLEVEREQAERGQEKHAGGN
Ga0187861_100592852	3300018020	Peatland	LRAEQVAEMREKVANYKRVRGLVNEWVELAVELERAERELAK
Ga0187861_100979262	3300018020	Peatland	VRPEQVDGMRRKVANYKRFRGLVNEWVDLEVEREQVERAQEKNVGGN
Ga0187861_101534611	3300018020	Peatland	MRRKVASYKRLRELVNEWVALEIERERAEREKEKRAGGN
Ga0187861_104260892	3300018020	Peatland	MRRKVANYKRFRELVNEWVDLEVERERAEREKEKQAGGH
Ga0187881_102555841	3300018024	Peatland	EQVEPMRQKVANYKRLRELMNEWVSLGVELERAERAEEKHARGH
Ga0187887_100223675	3300018043	Peatland	QQKVANYKRFRELVNEWVDLEVERERAERAQEKHAGGN
Ga0187858_105994802	3300018057	Peatland	QRVAEMRRKVANYKRFRELVNQWVDLAVEQERAERVQEKYSDGD
Ga0187766_113657421	3300018058	Tropical Peatland	EPMRRKVASYKRLRELVNEWVALEIERERAEREKEKRACGD
Ga0187784_109525742	3300018062	Tropical Peatland	VRPEHVTEMRQKVARYKRFRELVNEWVDLEVERERAEREKERHAGGH
Ga0187772_110665392	3300018085	Tropical Peatland	VRPEQVDPMQRKVANYKRFREAVNDWVDLEVERERAEREKEKQAGGH
Ga0187771_108538362	3300018088	Tropical Peatland	VRPEHVDPMRRKVANYKRFRELVNDWVDLEVERERAEREKERQAGGH
Ga0187771_118606322	3300018088	Tropical Peatland	MREKVSNYKRFRELVNECVDLSLELEQVERAQAKKDDDGN
Ga0187770_118029541	3300018090	Tropical Peatland	MRQKVANYKRLRELMNEWVSLGVELERAEREKERHASGH
Ga0182028_14329756	3300019788	Fen	MRQKVANYKRLRELVNEWVELAIELEKAERAAAKQGHGD
Ga0213853_110023401	3300021861	Watersheds	QKVANYKRFRELVNEWVDLEVEREKAERAEEKHAGGN
Ga0224555_12259041	3300023088	Soil	VAEMQQKVANYKRFRELVNEWVDLEVEREQAERAQEKHAGGN
Ga0208189_10102311	3300025444	Peatland	RPERVEGMQRKVANYKRFRGLVNEWVDLEVEREQVERAQEKNVGGN
Ga0208076_10915362	3300025464	Arctic Peat Soil	LRAEQVETMREKVANYKRLRELVQEWVELAVALERAEREQAK
Ga0208937_10468712	3300025506	Peatland	RRKVAHYKRFRELVNEWVDLEVGRERAERAQEKHAGGH
Ga0208565_10869452	3300027662	Peatlands Soil	HVTEMRQKVARYKRFRELVNEWVDLEVERERAEREKERHAGGH
Ga0208696_12659662	3300027696	Peatlands Soil	VANYKRLRELMNEWVSLGVELERAERAQEKHAGGH
(restricted) Ga0233418_101696621	3300027995	Sediment	MRQKVANYKRLRELVNEWVALEIERERAEREKEKRAGGD
(restricted) Ga0233418_102484901	3300027995	Sediment	RFVRPDQVAGMQEKVATYKRFRKLVNEWVDLAVALEREERARARQSHGD
Ga0311370_116396652	3300030503	Palsa	QQKVANYKRFRELVNEWVDLEVEREKAERAQEKHAGGN
Ga0310038_100427611	3300030707	Peatlands Soil	MQQKVANYKSFRELVNAWVDLEVEREQAERAQEKHAGGN
Ga0310686_1071795964	3300031708	Soil	MRQKVANYKRLRELMNEWVRLVVELERAAREKEKHTGGH
Ga0315290_102273103	3300031834	Sediment	VETYKRFRELVNEWVDLAVELARAERATSKQHHGD
Ga0326597_104372101	3300031965	Soil	VENYKRFRELVNEWVDLAVELGQAERATSKQRHGD
Ga0315289_115453352	3300032046	Sediment	VEKYKRFRELVNEWVDLAVELERAERATSKQHHGD
Ga0315277_113064812	3300032118	Sediment	MHQKVANYKRFRELVNQWVDLAVELERAERAQAKHSHGD
Ga0311301_116163221	3300032160	Peatlands Soil	PEQVDPMQRKVANYKRFRELVNDWVDLEVERERAEREKERQAGGH
Ga0311301_130029962	3300032160	Peatlands Soil	FVRPERVDGMQRKVANYKRFRELVNEWVDLEVEREKAERAQEKHAGGN
Ga0315281_104290243	3300032163	Sediment	MRQKVPNYKRLRELVNKWVGLAAELERAERAEAKHGDGY
Ga0315281_112982752	3300032163	Sediment	SRFVRPERVTEIRHRVENYKRFRELVNEWVDLSVELGRVERVRVKQSDGD
Ga0315268_106073022	3300032173	Sediment	ERVAAMREKVANYRQFRELINEWVELAVELERAERAEAKHSDGD
Ga0335078_106956582	3300032805	Soil	DRMQRKVANYKRFRELVNEWVDLEVERERAEREKEKHAGGH
Ga0335078_117555052	3300032805	Soil	VRPEHVDRMQRKVANYKRFRELVNDWVDLEVERERAEREKERQAGGH
Ga0335078_126154681	3300032805	Soil	RVKIGNYKRLRELTSEWVELAVELERAEREQARHHGD
Ga0335080_105806372	3300032828	Soil	VRPERGDSMQRKVANYKRFRELVNDWVDLEVERERAEREKERQAGGH
Ga0335081_116467521	3300032892	Soil	EMRVKVGNYKRFRELTSEWVELAVELERAGREQAKHADGH
Ga0335077_106099802	3300033158	Soil	STTRFVRPEHVDRMQRKVANYKRFRELVNDWVDLEVERERAEREKERQAGGH
Ga0326728_101072644	3300033402	Peat Soil	AEMQQKVANYKRFRELVNEWVDLEVEREQAERAQEKHAGGN
Ga0326728_102282494	3300033402	Peat Soil	VRPEQVAEMRRMVDNYKRFRELVNEWVDLAVERERAERAAGKPHARD
Ga0326728_102392511	3300033402	Peat Soil	QVEEMRQKVANYKRLRELMNEWVGLAVERERAERAEEKHRRGD
Ga0326727_100839593	3300033405	Peat Soil	MQRKMANYKRFRELVNQWVDLEVGREQAERAQEKNAGGN
Ga0326727_109938711	3300033405	Peat Soil	FVRPEQVDGMRRKVANYRRFRELVNEWVDLEVERERAERAQEKHAGGH
Ga0326727_111584101	3300033405	Peat Soil	VANYKRLRELMNEWVSLGVELERAEREKEKHPGGH
Ga0316619_103083442	3300033414	Soil	KVANYKRFRELVNEWVDLALELERAERVPARTSDGD
Ga0316627_1019702582	3300033482	Soil	VRPDQVAGVREKVANYKRFRELINEWVDLAVELERAERAQDRKSHAD
Ga0316628_1032959091	3300033513	Soil	EKVSNYKRFRELVNECVDLSLELEKIERAQAKKYSDGN
Ga0371489_0000151_61217_61336	3300033755	Peat Soil	MRQKVANYKRLRELMNEWVSLGVELEKAERAQEKHAGGN
Ga0371489_0010884_72_191	3300033755	Peat Soil	MRQKVARYKRFRELVNEWVDLEVERERAERDKERHAGGH
Ga0371489_0243177_55_174	3300033755	Peat Soil	MRRKVANYKRLRELMNEWVSLGVELERAERAQEKHAGGN
Ga0334811_174020_33_176	3300033891	Soil	VRPEQVEGMQRKVANYKRFRELVNEWVDLEVEREQVERGQEKHAGGN
Ga0314861_0512917_400_513	3300033977	Peatland	QKVANYKRLRELMNEWVSLGVELERAEREKERHASGH
Ga0373900_021676_49_168	3300034078	Sediment Slurry	MREKVANYRQFRELINEWVELAVEMERVERAEAKHSDGD
Ga0373912_0219857_75_218	3300034088	Sediment Slurry	VRPERVAAMRRKVANYKLFRELVNQWVDLALELERAERVPARPSDGD
Ga0373573_0239218_416_547	3300034782	Sediment	VRQEAVAEMREKVSNYKRFRELVNEWVDLVVELEKAKRAQAKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters