Metagenome / Metatranscriptome Family F076465

Basic Information
Family ID	F076465
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	51 residues
Representative Sequence	ITTVDVHRDMLGKMAADALHELSCSPNPQGREYQIPAELILGDSSGPAPAE
Number of Associated Samples	110
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.15 %
% of genes from short scaffolds (< 2000 bps)	94.92 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (95.763 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.339 % of family members)
Environment Ontology (ENVO)	Unclassified (24.576 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.542 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1AF_2010_repII_A001DRAFT_101111391 2JGIcombinedJ26739_1014925711 3C688J35102_1181294712 4C688J35102_1181433512 5soilH1_101439332 6JGI26340J50214_101648372 7Ga0062385_102023301 8Ga0066395_101356122 9Ga0066683_101960791 10Ga0066680_102905602 11Ga0066684_103453081 12Ga0070714_1009047492 13Ga0070733_103742131 14Ga0070732_107894601 15Ga0070665_1016002562 16Ga0066700_107164382 17Ga0066699_101997292 18Ga0068855_1023538952 19Ga0066705_101831121 20Ga0066691_109673081 21Ga0070740_103649171 22Ga0068864_1025576571 23Ga0068858_1000035171 24Ga0070766_100976292 25Ga0070766_104473292 26Ga0070717_107137742 27Ga0075028_1003943471 28Ga0075018_101307351 29Ga0070716_1002888132 30Ga0075014_1004232791 31Ga0070712_1002187731 32Ga0070712_1009608411 33Ga0070765_1023114031 34Ga0079222_102839721 35Ga0066653_106124342 36Ga0066665_100312941 37Ga0075426_102580911 38Ga0099793_101676182 39Ga0099794_101497771 40Ga0099829_100491322 41Ga0099829_102995911 42Ga0123356_101996742 43Ga0134111_102850152 44Ga0126370_109260042 45Ga0134125_116906921 46Ga0137389_106320961 47Ga0137383_102156381 48Ga0137399_105700992 49Ga0137370_104584882 50Ga0137387_112349771 51Ga0137360_114336562 52Ga0137361_102398512 53Ga0137398_100971452 54Ga0137395_101953341 55Ga0137413_115599461 56Ga0137419_115086582 57Ga0137416_111089112 58Ga0157373_111836691 59Ga0157374_116178362 60Ga0163162_125121391 61Ga0134079_100472592 62Ga0182024_100557373 63Ga0137405_12597232 64Ga0182039_109682202 65Ga0187786_102789812 66Ga0187817_109466082 67Ga0187778_111952771 68Ga0187781_111563811 69Ga0187816_101978781 70Ga0187770_106299992 71Ga0066655_106022671 72Ga0066667_115408171 73Ga0066669_104137422 74Ga0066669_107937551 75Ga0179592_100043063 76Ga0210399_103149902 77Ga0210401_104493851 78Ga0210405_113573322 79Ga0210397_104743981 80Ga0224550_10630982 81Ga0137417_14972234 82Ga0207671_110607061 83Ga0207663_112675071 84Ga0207701_106796112 85Ga0209808_11423612 86Ga0209808_13138792 87Ga0209807_11040842 88Ga0209648_103451882 89Ga0209577_107877521 90Ga0209214_10573951 91Ga0209010_10842401 92Ga0209733_10911022 93Ga0208988_11436981 94Ga0209588_12207212 95Ga0209656_102098991 96Ga0209656_103672642 97Ga0209060_103636722 98Ga0209580_105715341 99Ga0209180_102383341 100Ga0209701_102932412 101Ga0209380_103805141 102Ga0209488_104328131 103Ga0209488_105466201 104Ga0209526_101665861 105Ga0247684_10884981 106Ga0222749_104051851 107Ga0311368_104433641 108Ga0073994_100055742 109Ga0318560_107042811 110Ga0307477_104414002 111Ga0307473_110859471 112Ga0307478_103022132 113Ga0310909_105766321 114Ga0318532_100670491 115Ga0318504_104020572 116Ga0307470_114157201 117Ga0307471_1030616762 118Ga0306920_1018624881
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1AF_2010_repII_A001DRAFT_101111391 2JGIcombinedJ26739_1014925711 3C688J35102_1181294712 4soilH1_101439332 5JGI26340J50214_101648372 6Ga0062385_102023301 7Ga0066683_101960791 8Ga0070733_103742131 9Ga0070732_107894601 10Ga0066700_107164382 11Ga0066699_101997292 12Ga0070740_103649171 13Ga0068858_1000035171 14Ga0070766_104473292 15Ga0070717_107137742 16Ga0070716_1002888132 17Ga0070712_1009608411 18Ga0099829_100491322 19Ga0126370_109260042 20Ga0137389_106320961 21Ga0137383_102156381 22Ga0137370_104584882 23Ga0187786_102789812 24Ga0187781_111563811 25Ga0066669_107937551 26Ga0224550_10630982 27Ga0207671_110607061 28Ga0207663_112675071 29Ga0209808_11423612 30Ga0247684_10884981 31Ga0318560_107042811 32Ga0307477_104414002 33Ga0318532_100670491 34Ga0307471_1030616762
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50. 1Ga0187817_109466082 2JGIcombinedJ26739_1014925711 3C688J35102_1181294712 4soilH1_101439332 5JGI26340J50214_101648372 6Ga0062385_102023301 7Ga0066683_101960791 8Ga0070733_103742131 9Ga0070665_1016002562 10Ga0066699_101997292 11Ga0070740_103649171 12Ga0068858_1000035171 13Ga0070717_107137742 14Ga0070716_1002888132 15Ga0075014_1004232791 16Ga0070712_1009608411 17Ga0070765_1023114031 18Ga0066653_106124342 19Ga0099794_101497771 20Ga0099829_100491322 21Ga0099829_102995911 22Ga0123356_101996742 23Ga0134125_116906921 24Ga0137360_114336562 25Ga0137395_101953341 26Ga0137413_115599461 27Ga0137416_111089112 28Ga0163162_125121391 29Ga0187786_102789812 30Ga0187778_111952771 31Ga0187781_111563811 32Ga0187816_101978781 33Ga0066655_106022671 34Ga0066669_107937551 35Ga0179592_100043063 36Ga0224550_10630982 37Ga0207671_110607061 38Ga0207663_112675071 39Ga0209808_13138792 40Ga0209807_11040842 41Ga0209577_107877521 42Ga0209214_10573951 43Ga0209010_10842401 44Ga0209733_10911022 45Ga0209656_102098991 46Ga0209060_103636722 47Ga0209580_105715341 48Ga0209380_103805141 49Ga0247684_10884981 50Ga0311368_104433641 51Ga0073994_100055742 52Ga0318560_107042811 53Ga0307473_110859471 54Ga0310909_105766321 55Ga0318532_100670491 56Ga0318504_104020572
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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.52% β-sheet: 7.59% Coil/Unstructured: 70.89%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF13517	FG-GAP_3	16.95
PF14559	TPR_19	2.54
PF07690	MFS_1	1.69
PF00515	TPR_1	1.69
PF13432	TPR_16	0.85
PF01839	FG-GAP	0.85

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.76 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.76 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.76 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	44.92 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	13.56 %
Unclassified	root	N/A	4.24 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	22.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.88 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	13.56 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.88 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13.56 %
Unclassified	root	N/A	4.24 %

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10111139	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300002245\|JGIcombinedJ26739_101492571	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	571	Open in IMG/M
3300002568\|C688J35102_118129471	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	532	Open in IMG/M
3300002568\|C688J35102_118143351	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	533	Open in IMG/M
3300003321\|soilH1_10143933	All Organisms → cellular organisms → Bacteria	1978	Open in IMG/M
3300003368\|JGI26340J50214_10164837	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	552	Open in IMG/M
3300004080\|Ga0062385_10202330	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300004633\|Ga0066395_10135612	All Organisms → cellular organisms → Bacteria	1231	Open in IMG/M
3300005172\|Ga0066683_10196079	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300005174\|Ga0066680_10290560	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1043	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.53%
Host-Associated	Host-Associated	8.47%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	7.63%
Arthropoda	Host-Associated → Arthropoda	0.85%
Plants	Host-Associated → Plants	7.63%
Terrestrial	Environmental → Terrestrial	83.90%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Arthropoda → Digestive System	0.85%
Freshwater	Environmental → Aquatic → Freshwater	5.08%
Peat	Environmental → Terrestrial → Peat	1.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.39%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.24%
Sediment	Environmental → Aquatic → Sediment	2.54%
Soil	Environmental → Terrestrial → Soil	82.20%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.39%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.85%
Loam	Environmental → Terrestrial → Soil → Loam	16.10%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.54%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.69%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.08%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.24%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.08%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.10%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.32%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.10%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.69%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.54%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.69%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.85%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.39%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.24%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.24%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.69%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.24%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.32%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.69%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.85%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.24%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.85%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.39%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.34%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.54%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M

Showing 1 to 10 of 110 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_101111391	3300000793	Forest Soil	VDVHRDMLGKMAAEALHELSCSADPHGREYQIPAELILGESSGPAPAE*
JGIcombinedJ26739_1014925711	3300002245	Forest Soil	PSITTVDVHRDMLGQIAADALHELSCSANPQGREYQIPAEMILRESSGPAAPEPASS*
C688J35102_1181294712	3300002568	Soil	PSITTVDIHRETLGRIAADALHELSDSATPNGKEYQIGAELILGESSGPAPDSSNLIHSSTTSVLA*
C688J35102_1181433512	3300002568	Soil	PSITTVDIHRETLGRIAADALHELSDSATPNGKEYQIGAELILGESSGPAPDSSDLIHSSITSVLA*
soilH1_101439332	3300003321	Sugarcane Root And Bulk Soil	SLTTVDVHRDMLGRMAADALHELSTAKRAKGKEYRIKTDLVIGGSSGPVSTK*
JGI26340J50214_101648372	3300003368	Bog Forest Soil	SNPSITTVDIHRDILGQMAADALHALSCSANPEGKEYRIDAELIVGESSGPAPREQTP*
Ga0062385_102023301	3300004080	Bog Forest Soil	TVDIHRDLLGQMAADALHELCSSTIPQGREYEIPAELIVGRSTGPVNS*
Ga0066395_101356122	3300004633	Tropical Forest Soil	TVDIHRDLLGQMAADVLHELCSSANPQGKEYEISAELFVGNSSGPVSSAAR*
Ga0066683_101960791	3300005172	Soil	KTRLAEYSNPSITTVDIHRDILGQIAADALHELSCSVDPQGKEYQISAELIFGDSSGPAPPE*
Ga0066680_102905602	3300005174	Soil	TVDVHRDMLGKMAADALHELSRSADPQGKEYQIPAELILRDSSGPAPFE*
Ga0066684_103453081	3300005179	Soil	SITTVDIHRETLGRLAADALHELSGSATPNGKEYQIGAELILGESSGPAPSGSALIHSSTTSVLA*
Ga0070714_1009047492	3300005435	Agricultural Soil	ITTVDIHRETLGRIAADALHELSDSATPNGKEYQIGAELILGESSGPAPLVEP*
Ga0070733_103742131	3300005541	Surface Soil	LGQMAADVLHELCSSPNPEGKQYEISAELFVGNSSGPVRAE*
Ga0070732_107894601	3300005542	Surface Soil	HRETLGQMAADALHELSSSEEPQGREYQIGAELVLGESSGPVGG*
Ga0070665_1016002562	3300005548	Switchgrass Rhizosphere	TTVDIHRDMLGKMAADALHELSCSSNPQGREYQIPAELILGESSGPAPSHHSD*
Ga0066700_107164382	3300005559	Soil	VHRDLLGRIAADALHELSSSKEASGKEYSIEAELVIGQSSGPVAR*
Ga0066699_101997292	3300005561	Soil	ITTVDIHRQILGQMAADALHELSSSASPQGREYEIGAELVLGESSGPAPA*
Ga0068855_1023538952	3300005563	Corn Rhizosphere	TVDIHRDMLGKMAADALHELSCSSNPQGREYQIPAELILGESSGPAPSHHSD*
Ga0066705_101831121	3300005569	Soil	TTVDIHRDLLGRIAADALHELSSSKEASGKEYSIEAELVVGQSSGPVAH*
Ga0066691_109673081	3300005586	Soil	VDVHRDMLGQMAADALHELSCSANPLGREYQIPAELILGDSSGPAPSEQMP*
Ga0070740_103649171	3300005607	Surface Soil	TTVDIHREMLGKIAADALHELSVSSSPQGKEYLIGAELIVGESSGPAPVEERPQLRAAFAPIPPV*
Ga0068864_1025576571	3300005618	Switchgrass Rhizosphere	SNPSITTVDIHRDMLGKMAADALHELSCSSNPQGREYQIPAELILGESSGPAPSHHSD*
Ga0068858_1000035171	3300005842	Switchgrass Rhizosphere	ITTVDVHRDMLGQVAADALHELSTSDNPHGKDYQISAELIVGDSSGPAPSE*
Ga0070766_100976292	3300005921	Soil	SITTVDVHRDMLGQMAADALHELSASPNPQGREYQIPAELILGESSGPAPAESD*
Ga0070766_104473292	3300005921	Soil	VDVHREKLGQMAAEALHELSTSDSPHGREYQIGAELVLGESSGPVSVSTRS*
Ga0070717_107137742	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VDIHRDLLGRLAADALHELSGSDDAQGKEYQVNAELVVGGSTGPVPRGRA*
Ga0075028_1003943471	3300006050	Watersheds	TVDVHRDMLGKMAADALHELSCSADPHGKEYQIPAELILGDSSGPAPAE*
Ga0075018_101307351	3300006172	Watersheds	RDMLGKMAADALHELSCSADPHGREYQIPAELILGDSSGPAPAE*
Ga0070716_1002888132	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	SITTVDIHRDMLGQMAADALHELSRSADPQGREYQITAELIAGDSSGPAPVGEI*
Ga0075014_1004232791	3300006174	Watersheds	TVDVHREMLGRMAADALHELSCSADPHGREYQIPAELILGDSSGPAPAE*
Ga0070712_1002187731	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	DIHRDLLGQMAADALHELCSSTNPQGREYEIPAELIVGHSSGPVKA*
Ga0070712_1009608411	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	SLTTVDVHRDLLGRMAADALHELSTSKDATGKDYCIDAELVIGSSSGPVRNHS*
Ga0070765_1023114031	3300006176	Soil	ITTVDVHRETLGQVAADALHELSNSDNPQGREYKIGAELVLGGSSGTASG*
Ga0079222_102839721	3300006755	Agricultural Soil	PSLTTVDVHRDLLGRMAADALHELSTSKDATGKDYCIDAELVVGASSGPVPKYN*
Ga0066653_106124342	3300006791	Soil	LITTVDVHREMVGQMAADALHELSRSANPQGKEYQIPAELILGDSSGPARFE*
Ga0066665_100312941	3300006796	Soil	ITTVDVHRDMLGKMAADALHELSRSADPQGKEYQIPAELILRDSSGPAPFE*
Ga0075426_102580911	3300006903	Populus Rhizosphere	VDIHRDLLGKMAADALHELSCSTNPEGREYQIPAELILGESSGPAPSHHSD*
Ga0099793_101676182	3300007258	Vadose Zone Soil	SITTVDVHRDMLGQMAADALHELSRSPNPQGREYQIPAELILGDSSGPAPSD*
Ga0099794_101497771	3300007265	Vadose Zone Soil	SNPSITTVDIHRDMLGQIAADALHELSCSENPQGREYQISAELIPGDSSGPAPLA*
Ga0099829_100491322	3300009038	Vadose Zone Soil	TVDIHRDVLGQIAADALHELSRSADPQGREYQITAELIPGDSSGPASPIPHSAWP*
Ga0099829_102995911	3300009038	Vadose Zone Soil	SNPSITTVDIHRDVLGQMAADALHELSCSTNPHGREYEISAELVLGDSSGPAPAP*
Ga0123356_101996742	3300010049	Termite Gut	TTVDIHRQRLGQIAADALHELSDATTPTGREYEIGTELVLGESSGPAPHL*
Ga0134111_102850152	3300010329	Grasslands Soil	TTVDIHRDMLGQMAADALHELSCAPNPQGREYQIPAELILGDSSGPAPSEQASP*
Ga0126370_109260042	3300010358	Tropical Forest Soil	DLLGRIAADALHELSSSKDATGREYPIDAELVIGGSSGPVSNGRG*
Ga0134125_116906921	3300010371	Terrestrial Soil	PSLTTVNLHRDLLGRIAADALHELSSSKDATGREYPIDAELVIGGSSGPVSNGHP*
Ga0137389_106320961	3300012096	Vadose Zone Soil	EYSNPSITTVDIHRDMLGQMAADALHELSCSTNPHGREYEISAELVLGDSSGPAPAP*
Ga0137383_102156381	3300012199	Vadose Zone Soil	HRDMLGQMAADALHELSRSPNPQGREYQIPAELILGDSSGPAPSEQMP*
Ga0137399_105700992	3300012203	Vadose Zone Soil	VDVHREMVGRMAADVLHELSCSANPQGKEYQVPAELILGDSSGPAPSE*
Ga0137370_104584882	3300012285	Vadose Zone Soil	LTTVDIHRDLLGCMAADALHELSGSGNPRGKEYRVSAELVIGASSGPAVRA*
Ga0137387_112349771	3300012349	Vadose Zone Soil	VDVHRDMLGKMAADALHELSRSADPQGREYQIPAELILGDSSGPAPSE*
Ga0137360_114336562	3300012361	Vadose Zone Soil	YSNPTLTTVDIHRDLLGSMAADALHELSGSVNPRGKEYRVNAKLIIGASSGPAPRS*
Ga0137361_102398512	3300012362	Vadose Zone Soil	HRDMLGKMAADALHELSCSPNPQGREYQIPAELILGDSSGPAPSEQMP*
Ga0137398_100971452	3300012683	Vadose Zone Soil	MVNVHRDMLGKMAADALHELSRSADPQGKEYQIPAELIVGDSSGPAPL*
Ga0137395_101953341	3300012917	Vadose Zone Soil	YSNPSITTVDIHRDVLGQIAADALHELSCSADPQGREYQITAELVPGDSSGPAPSTNP*
Ga0137413_115599461	3300012924	Vadose Zone Soil	PSLTTVDIHRDMLGQMAADALHELSRSANPDGREYQISAELVVGDSSGPAPTAP*
Ga0137419_115086582	3300012925	Vadose Zone Soil	HRDMLGQMAADALHELSASPNPQGREYQIPAELILGDSSGPAPTE*
Ga0137416_111089112	3300012927	Vadose Zone Soil	SNLSFTSVDVHREMLGQMAADALHELSCSPNPQGKEYQIPAELILGDSSGPAPSEEMP*
Ga0157373_111836691	3300013100	Corn Rhizosphere	TVDVHRDLLGRMAADALHELSTSKRAKGKEYRIKTDLVIGGSSGPVSAKHS*
Ga0157374_116178362	3300013296	Miscanthus Rhizosphere	DIHRDMLGKMAADALHELSCSSNPQGREYQIPAELILGESSGPAPSHHSD*
Ga0163162_125121391	3300013306	Switchgrass Rhizosphere	IHRDLLGRIAADALHELSSSKDATGKEYPIDAELVIGESSGPVPLGHP*
Ga0134079_100472592	3300014166	Grasslands Soil	HRDLLGRIAADALHELSSSKEASGKEYSIEAELVVGQSSGPVAH*
Ga0182024_100557373	3300014501	Permafrost	DVHRDMLGQMAADALHELSASPNPQGREYQIPAELILGDSSGPAPTE*
Ga0137405_12597232	3300015053	Vadose Zone Soil	VDVHREMVGQMAADALHELSCSANPQGKEYQISAELILGDSSGPAPSE*
Ga0182039_109682202	3300016422	Soil	TTVDIHRDLLGQMAADVLHELCSSANPQGKEYEISAELFVGNSSGPVSSTAR
Ga0187786_102789812	3300017944	Tropical Peatland	EYSNPSITTVDIHRDLLGQMAADVLHELCSSPNPQGKEYEISAELFVGNSSGPVPGGSR
Ga0187817_109466082	3300017955	Freshwater Sediment	ITTVDVHRDMLGKMAADALHELSCSPNPQGREYQIPAELILGDSSGPAPAE
Ga0187778_111952771	3300017961	Tropical Peatland	TVDIHRDLLGQMAADALHELCSSSNPQGRVYEISAELVVGDSSGPWKS
Ga0187781_111563811	3300017972	Tropical Peatland	VDIHRDLLGRMAADVLHELCSSPDPRGKKYPISAELVIGRSSGPVPAS
Ga0187816_101978781	3300017995	Freshwater Sediment	DIHRDLLGRMAADVLHELCSSTDPRGKKYAISAELVIGKSSGPAPSS
Ga0187770_106299992	3300018090	Tropical Peatland	VDIHRDLLGQMAADALHELCSSPNPQGREYEISAELVVGNSSGPWNS
Ga0066655_106022671	3300018431	Grasslands Soil	PSITTVDIHRDMLGKLAADALHELSCAAVPHGREYQVPAELILGDSSGPAPVE
Ga0066667_115408171	3300018433	Grasslands Soil	RDMLGKMAADALHELSRSADPQGKEYQIPAELILGDSSGPAPSE
Ga0066669_104137422	3300018482	Grasslands Soil	DLLGRIAADALHELSSSKEASGKEYSIEAELVVGQSSGPVAH
Ga0066669_107937551	3300018482	Grasslands Soil	TTVDIHRDMLGRIAADALHELSSSKDATGKEYHIDAELVIGGSSGPITNGNA
Ga0179592_100043063	3300020199	Vadose Zone Soil	SITTVDVHRDMLGKMAADALHELSRSADPQGKEYQIPAELILGDSSGPAPFK
Ga0210399_103149902	3300020581	Soil	TVDVHREMLGRMAADALHELSCSADPHGREYQIPAELILGDSSGPAPAE
Ga0210401_104493851	3300020583	Soil	HRDMLGQMAADALHELSCSANPQGREYHIPAELILRDSSGPAPAEKS
Ga0210405_113573322	3300021171	Soil	ITTVDVHRDMLGQMAADALHELSASPNPQGREYQIPAELILGESSGPAPLESD
Ga0210397_104743981	3300021403	Soil	ITTVDVHRDMLGQMAADALHELSASPNPQGREYQIPAELILGESSGPAPAESD
Ga0224550_10630982	3300022873	Soil	RDKLGRLAADALCELSSSANPQGREYHISAELIVGESSGPAPNAQASRD
Ga0137417_14972234	3300024330	Vadose Zone Soil	TVDVHRDMLGQMAADALHELSCSANPLGREYQIPAELILGDSSGPAPTEQMP
Ga0207671_110607061	3300025914	Corn Rhizosphere	REILGHMAADALDELSRSVNPQGKEYQIGAELVLGDSSGPAPH
Ga0207663_112675071	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	TVDIHHDLLGNMGADALHELSCSPNAEGREYQIPAELIVGDSSGPAPSRHSS
Ga0207701_106796112	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	HRDMLGQVAADALHELSTSDNPHGKDYQISAELIVGDSSGPAPSE
Ga0209808_11423612	3300026523	Soil	TTVDVHREMVGRMAADVLHELSCSANPQGKEYQVPAELILGDSSGPAPSE
Ga0209808_13138792	3300026523	Soil	SNPSLTTVDIHRDLLGCMAADALHELSGSGNPRGKEYRVSAELVIGASSGPAVRA
Ga0209807_11040842	3300026530	Soil	TTVDIHRDLLGRIAADALHELSSSKEASGKEYSIEAELVVGQSSGPVAH
Ga0209648_103451882	3300026551	Grasslands Soil	IHRDVLGQIAADALHELSRSADPQGREYQITAELIPGDSSGPAPPIIP
Ga0209577_107877521	3300026552	Soil	ITTVDVHREMVGRMAADVLHELSCSANPQGKEYQVPAELILGDSSGPAPSD
Ga0209214_10573951	3300027071	Forest Soil	NPSITTVDIHRDALGQMAADALHELSRSADPQGREYQISAELIPGNSSGPAPLIVP
Ga0209010_10842401	3300027370	Forest Soil	TTVDIHRDLLGGMAADALHELCSSKIPQGREYEILAELVVGQSSGPVKP
Ga0209733_10911022	3300027591	Forest Soil	SNPSITTVDIHRDMLGQMAADALHDLSCSPNPQGREYQISAELVLGDSSGAAPAE
Ga0208988_11436981	3300027633	Forest Soil	TTVDIHRDMLGQMAADALHELSRSANPDGREYQISAELVVGDSSGPAPTAH
Ga0209588_12207212	3300027671	Vadose Zone Soil	RDMLGQIAADALHELSCSENPQGREYQISAELIPGDSSGPAPLA
Ga0209656_102098991	3300027812	Bog Forest Soil	TTVDIHRDMLGQMAADALHELSCSATPQGREYQIPAELILRESSGPAPAEKS
Ga0209656_103672642	3300027812	Bog Forest Soil	SNPSITTVDIHRDILGQMAADALHALSCSANPEGKEYRIDAELIVGESSGPAPREQTP
Ga0209060_103636722	3300027826	Surface Soil	ITTVDVHRETLGQMAADALHELSSSENPQGREYQIDAELVLGGSSGPAPA
Ga0209580_105715341	3300027842	Surface Soil	PSITTVDVHRETLGQMAADALHELSSSEEPQGREYQIGAELVLAESSGPVGG
Ga0209180_102383341	3300027846	Vadose Zone Soil	YSNPSITTVDIHRDVLGQIAADALHELSRSADPQGREYQITAELIPGDSSGPASPIPHSAWP
Ga0209701_102932412	3300027862	Vadose Zone Soil	DVHRDMLGKMAADALHELSCSADPHGREYQIPAELILGDSSGPAPAE
Ga0209380_103805141	3300027889	Soil	VDVHREKLGQMAAEALHELSTSDSPHGREYQIGAELVLGESSGPVSVSTRS
Ga0209488_104328131	3300027903	Vadose Zone Soil	NPSITTVDIHRDVLGQIAADALHELSRSADPQGREYQITAELIQGDSSGPAPPIIP
Ga0209488_105466201	3300027903	Vadose Zone Soil	VHRDMLGQMAADALHELSRSPNPQGREYQIPAELILGDSSGAAPSEQMP
Ga0209526_101665861	3300028047	Forest Soil	SITTVDIHRDVLGHMAADALHELSCSADPQGREYQITAELIPGDSSGPAPPRAR
Ga0247684_10884981	3300028138	Soil	LTTVDIHRDLLGRMAADALHELTNSENAHGKEYRIGAELVIGKSSGPIVGGRA
Ga0222749_104051851	3300029636	Soil	RDMLGRMAADALHELSRSADPHGREYQIPAELILGDSSGPAPAE
Ga0311368_104433641	3300029882	Palsa	PSITTVDVHRETLGHIAADALHELSSSVDPQGREYLIGAELVLGGSSGPASH
Ga0073994_100055742	3300030991	Soil	ITTVDIHRETLGQLAADALHELSSTASPQGKEYQIGSELVIGNSSGPAPR
Ga0318560_107042811	3300031682	Soil	PSITTVDIHRNLLGQMAADALHALCTSSAPQGREYEISAELIVGQSSGKANS
Ga0307477_104414002	3300031753	Hardwood Forest Soil	DVLGQMAADALHELSRSADPQGREYQITAELVPGESSGPAPFPSFRS
Ga0307473_110859471	3300031820	Hardwood Forest Soil	NPSITTVDIHRDVLGQMAADALHELSRSANPQGREYQVTAELIPGNSSGPASVPSLWP
Ga0307478_103022132	3300031823	Hardwood Forest Soil	TTVDIHRDMLGQMAADALHELSRSADPQGREYQITAELISGDSSGPAPPIVP
Ga0310909_105766321	3300031947	Soil	TTVDIHRDLLGQMAADALHELCSSRDPQGREYEIPAELIVGHSSGPVKA
Ga0318532_100670491	3300032051	Soil	ITTVDVNRHLLGQIATDALHALCSSPDPQGREYEISAELVVGQSSGKAQSSRSNS
Ga0318504_104020572	3300032063	Soil	ITTVDIHRDLLGQMAADVLHELCCSQNPHGKQYEIPAELIVGNSSGPAPSA
Ga0307470_114157201	3300032174	Hardwood Forest Soil	IHRDVLGQMAADALHELSCSADPQGREYQITAELIPGDSSGPAPPLAR
Ga0307471_1030616762	3300032180	Hardwood Forest Soil	IHRDVLGQIAADALHELSCSTDPQGRQYQITAELIPGDSSGPAPSTNT
Ga0306920_1018624881	3300032261	Soil	TTVDIHRNLLGQMAADALHALCTSSAPQGREYEISAELIIGQSSGKANS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076465

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences