NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F076456

Metagenome / Metatranscriptome Family F076456

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F076456
Family Type Metagenome / Metatranscriptome
Number of Sequences 118
Average Sequence Length 94 residues
Representative Sequence MIYGRSRKHTYIPGGFFHLEEEGTKTRVFGYGHGDAIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGTGKTWKGFID
Number of Associated Samples 94
Number of Associated Scaffolds 118

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 46.61 %
% of genes near scaffold ends (potentially truncated) 28.81 %
% of genes from short scaffolds (< 2000 bps) 79.66 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(13.559 % of family members)
Environment Ontology (ENVO) Unclassified
(25.424 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(57.627 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 44.72%    Coil/Unstructured: 55.28%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.71
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Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
b.61.4.1: Quinohemoprotein amine dehydrogenase A chain, domain 3d1pbya51pby0.75
b.61.4.1: Quinohemoprotein amine dehydrogenase A chain, domain 3d1pbya51pby0.75
b.61.4.1: Quinohemoprotein amine dehydrogenase A chain, domain 3d1jmxa51jmx0.74
b.61.4.1: Quinohemoprotein amine dehydrogenase A chain, domain 3d1jmxa51jmx0.74
f.4.1.1: OMPA-liked1qjpa_1qjp0.72
b.61.1.0: Avidin/streptavidind2y32a_2y320.72
f.4.1.1: OMPA-liked1qjpa_1qjp0.72
b.61.1.0: Avidin/streptavidind2y32a_2y320.72
f.4.1.2: OMPA-liked3gp6a13gp60.71
f.4.1.2: OMPA-liked3gp6a13gp60.71

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 118 Family Scaffolds
PF02580Tyr_Deacylase 18.64
PF01546Peptidase_M20 7.63
PF07687M20_dimer 4.24
PF02585PIG-L 3.39
PF00288GHMP_kinases_N 2.54
PF00005ABC_tran 1.69
PF08448PAS_4 0.85
PF08335GlnD_UR_UTase 0.85
PF00672HAMP 0.85
PF02787CPSase_L_D3 0.85
PF00809Pterin_bind 0.85
PF00679EFG_C 0.85
PF00999Na_H_Exchanger 0.85
PF09363XFP_C 0.85
PF02687FtsX 0.85
PF10040CRISPR_Cas6 0.85
PF01648ACPS 0.85
PF01274Malate_synthase 0.85
PF08753NikR_C 0.85
PF13606Ank_3 0.85
PF13614AAA_31 0.85
PF00215OMPdecase 0.85
PF08340DUF1732 0.85
PF13360PQQ_2 0.85
PF05237Obsolete Pfam Family 0.85
PF02233PNTB 0.85
PF12631MnmE_helical 0.85
PF14067LssY_C 0.85
PF13620CarboxypepD_reg 0.85
PF09907HigB_toxin 0.85
PF04055Radical_SAM 0.85
PF00293NUDIX 0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 118 Family Scaffolds
COG1490D-aminoacyl-tRNA deacylaseTranslation, ribosomal structure and biogenesis [J] 18.64
COG2120N-acetylglucosaminyl deacetylase, LmbE familyCarbohydrate transport and metabolism [G] 3.39
COG0025NhaP-type Na+/H+ or K+/H+ antiporterInorganic ion transport and metabolism [P] 0.85
COG0475Kef-type K+ transport system, membrane component KefBInorganic ion transport and metabolism [P] 0.85
COG0864Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domainTranscription [K] 0.85
COG1282NAD/NADP transhydrogenase beta subunitEnergy production and conversion [C] 0.85
COG1561Endoribonuclease YloC, YicC familyTranslation, ribosomal structure and biogenesis [J] 0.85
COG2225Malate synthaseEnergy production and conversion [C] 0.85
COG2844UTP:GlnB (protein PII) uridylyltransferaseSignal transduction mechanisms [T] 0.85
COG3004Na+/H+ antiporter NhaAEnergy production and conversion [C] 0.85
COG3263NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domainsEnergy production and conversion [C] 0.85
COG4651Predicted Kef-type K+ transport protein, K+/H+ antiporter domainInorganic ion transport and metabolism [P] 0.85

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000567|JGI12270J11330_10016291All Organisms → cellular organisms → Bacteria4733Open in IMG/M
3300001213|JGIcombinedJ13530_101694367All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300002245|JGIcombinedJ26739_100008257All Organisms → cellular organisms → Bacteria8286Open in IMG/M
3300004018|Ga0055452_10214038All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus644Open in IMG/M
3300004080|Ga0062385_10538144All Organisms → cellular organisms → Bacteria727Open in IMG/M
3300004081|Ga0063454_102089608All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300004082|Ga0062384_100446531All Organisms → cellular organisms → Bacteria844Open in IMG/M
3300004092|Ga0062389_102142948All Organisms → cellular organisms → Bacteria733Open in IMG/M
3300005531|Ga0070738_10115395All Organisms → cellular organisms → Bacteria1391Open in IMG/M
3300005533|Ga0070734_10318817All Organisms → cellular organisms → Bacteria888Open in IMG/M
3300005541|Ga0070733_10033309All Organisms → cellular organisms → Bacteria3213Open in IMG/M
3300005541|Ga0070733_11054476All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300005542|Ga0070732_10068263All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia2069Open in IMG/M
3300005591|Ga0070761_10291252All Organisms → cellular organisms → Bacteria981Open in IMG/M
3300005836|Ga0074470_10495429All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia144771Open in IMG/M
3300005836|Ga0074470_11262921All Organisms → cellular organisms → Bacteria4414Open in IMG/M
3300006041|Ga0075023_100319769All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300006050|Ga0075028_100009177All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4017Open in IMG/M
3300006050|Ga0075028_100141724All Organisms → cellular organisms → Bacteria1262Open in IMG/M
3300006052|Ga0075029_100001760All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia12329Open in IMG/M
3300006052|Ga0075029_100832155All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia630Open in IMG/M
3300006172|Ga0075018_10317857All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300006237|Ga0097621_100651350All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4966Open in IMG/M
3300006914|Ga0075436_101404277All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300009088|Ga0099830_10857643All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus750Open in IMG/M
3300009177|Ga0105248_10477972All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-41404Open in IMG/M
3300009525|Ga0116220_10062904All Organisms → cellular organisms → Bacteria1553Open in IMG/M
3300009672|Ga0116215_1513718All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300010341|Ga0074045_10116619All Organisms → cellular organisms → Bacteria1835Open in IMG/M
3300010366|Ga0126379_13777793All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300010373|Ga0134128_11113393All Organisms → cellular organisms → Bacteria → Proteobacteria872Open in IMG/M
3300010398|Ga0126383_10822898All Organisms → cellular organisms → Bacteria1012Open in IMG/M
3300012096|Ga0137389_11664641All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300012189|Ga0137388_11804010All Organisms → cellular organisms → Bacteria544Open in IMG/M
3300012205|Ga0137362_11191853All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300012363|Ga0137390_10258780All Organisms → cellular organisms → Bacteria1726Open in IMG/M
3300012469|Ga0150984_106788933All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300012923|Ga0137359_10283535All Organisms → cellular organisms → Bacteria1477Open in IMG/M
3300014153|Ga0181527_1023336All Organisms → cellular organisms → Bacteria → Acidobacteria3893Open in IMG/M
3300014489|Ga0182018_10188961All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-41157Open in IMG/M
3300014501|Ga0182024_10000616All Organisms → cellular organisms → Bacteria92658Open in IMG/M
3300014838|Ga0182030_10114259All Organisms → cellular organisms → Bacteria3636Open in IMG/M
3300014838|Ga0182030_10773726All Organisms → cellular organisms → Bacteria884Open in IMG/M
3300016294|Ga0182041_12324600All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300017970|Ga0187783_11302962All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300017972|Ga0187781_10136900All Organisms → cellular organisms → Bacteria1714Open in IMG/M
3300018062|Ga0187784_10039457All Organisms → cellular organisms → Bacteria3820Open in IMG/M
3300018064|Ga0187773_11097809All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus528Open in IMG/M
3300018090|Ga0187770_11393479All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300020579|Ga0210407_10818210All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300021170|Ga0210400_10948981All Organisms → cellular organisms → Bacteria701Open in IMG/M
3300021181|Ga0210388_10000077All Organisms → cellular organisms → Bacteria → Acidobacteria133953Open in IMG/M
3300021401|Ga0210393_10122907All Organisms → cellular organisms → Bacteria → Acidobacteria2076Open in IMG/M
3300021401|Ga0210393_10596181All Organisms → cellular organisms → Bacteria902Open in IMG/M
3300021402|Ga0210385_10139194All Organisms → cellular organisms → Bacteria1728Open in IMG/M
3300021402|Ga0210385_10952186All Organisms → cellular organisms → Bacteria660Open in IMG/M
3300021407|Ga0210383_11004889All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300021420|Ga0210394_10420159All Organisms → cellular organisms → Bacteria1177Open in IMG/M
3300021475|Ga0210392_10457065All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium937Open in IMG/M
3300021477|Ga0210398_10548509All Organisms → cellular organisms → Bacteria940Open in IMG/M
3300021477|Ga0210398_11533691All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300022721|Ga0242666_1031458All Organisms → cellular organisms → Bacteria → Acidobacteria1050Open in IMG/M
3300022721|Ga0242666_1192826All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300022722|Ga0242657_1039945All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4988Open in IMG/M
3300025560|Ga0210108_1008190All Organisms → cellular organisms → Bacteria1795Open in IMG/M
3300025941|Ga0207711_10238109All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus1668Open in IMG/M
3300026555|Ga0179593_1109575All Organisms → cellular organisms → Bacteria → Acidobacteria1976Open in IMG/M
3300027570|Ga0208043_1089962All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300027641|Ga0208827_1105378All Organisms → cellular organisms → Bacteria832Open in IMG/M
3300027662|Ga0208565_1223195All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300027706|Ga0209581_1007155All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus7937Open in IMG/M
3300027795|Ga0209139_10241579All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300027867|Ga0209167_10002372All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales10247Open in IMG/M
3300027882|Ga0209590_10767060All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300027905|Ga0209415_10480208All Organisms → cellular organisms → Bacteria966Open in IMG/M
3300027905|Ga0209415_10939872All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300027908|Ga0209006_10802241All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300027910|Ga0209583_10480641All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300027911|Ga0209698_10000484All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales45822Open in IMG/M
3300027965|Ga0209062_1205010All Organisms → cellular organisms → Bacteria719Open in IMG/M
3300029636|Ga0222749_10051942All Organisms → cellular organisms → Bacteria1812Open in IMG/M
3300029943|Ga0311340_11266668All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300029944|Ga0311352_11125317All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300029951|Ga0311371_11969845All Organisms → cellular organisms → Bacteria622Open in IMG/M
3300029999|Ga0311339_10136438All Organisms → cellular organisms → Bacteria2918Open in IMG/M
3300030058|Ga0302179_10457913All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300030520|Ga0311372_12602957All Organisms → cellular organisms → Bacteria564Open in IMG/M
3300031090|Ga0265760_10021171All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus1880Open in IMG/M
3300031231|Ga0170824_106016685All Organisms → cellular organisms → Bacteria752Open in IMG/M
3300031231|Ga0170824_106628857All Organisms → cellular organisms → Bacteria752Open in IMG/M
3300031234|Ga0302325_10905788All Organisms → cellular organisms → Bacteria1223Open in IMG/M
3300031234|Ga0302325_11768608All Organisms → cellular organisms → Bacteria777Open in IMG/M
3300031236|Ga0302324_102429724All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300031344|Ga0265316_10887482All Organisms → cellular organisms → Bacteria623Open in IMG/M
3300031474|Ga0170818_102386831All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300031525|Ga0302326_11148253All Organisms → cellular organisms → Bacteria → Acidobacteria1074Open in IMG/M
3300031525|Ga0302326_11875966All Organisms → cellular organisms → Bacteria781Open in IMG/M
3300031708|Ga0310686_100377190All Organisms → cellular organisms → Bacteria → Acidobacteria7198Open in IMG/M
3300031708|Ga0310686_103232596All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300031708|Ga0310686_106512125All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300031708|Ga0310686_107140423All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300031708|Ga0310686_108399015All Organisms → cellular organisms → Bacteria3854Open in IMG/M
3300031708|Ga0310686_108556570All Organisms → cellular organisms → Bacteria1275Open in IMG/M
3300031708|Ga0310686_110995921All Organisms → cellular organisms → Bacteria1056Open in IMG/M
3300031708|Ga0310686_117214832All Organisms → cellular organisms → Bacteria693Open in IMG/M
3300031708|Ga0310686_118032379All Organisms → cellular organisms → Bacteria → Proteobacteria5629Open in IMG/M
3300031708|Ga0310686_118047859All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300031718|Ga0307474_10048944All Organisms → cellular organisms → Bacteria3118Open in IMG/M
3300031718|Ga0307474_10698425All Organisms → cellular organisms → Bacteria → Acidobacteria801Open in IMG/M
3300032160|Ga0311301_10014123All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus24272Open in IMG/M
3300032515|Ga0348332_12285257All Organisms → cellular organisms → Bacteria543Open in IMG/M
3300032515|Ga0348332_13459164All Organisms → cellular organisms → Bacteria764Open in IMG/M
3300032770|Ga0335085_11734774All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300032782|Ga0335082_11545161All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia536Open in IMG/M
3300032805|Ga0335078_12192086All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300032829|Ga0335070_10000020All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia263616Open in IMG/M
3300032892|Ga0335081_10771671All Organisms → cellular organisms → Bacteria1154Open in IMG/M
3300033887|Ga0334790_191101All Organisms → cellular organisms → Bacteria593Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil13.56%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil9.32%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa9.32%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil7.63%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds6.78%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.78%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil6.78%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.24%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland4.24%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.39%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.54%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.69%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)1.69%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.69%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.69%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog1.69%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.69%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter1.69%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.69%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.85%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland0.85%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.85%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.85%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa0.85%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.85%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.85%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.85%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.85%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.85%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.85%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.85%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.85%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000567Peat soil microbial communities from Weissenstadt, Germany - SII-2010EnvironmentalOpen in IMG/M
3300001213Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004018Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWC_D2EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005531Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2EnvironmentalOpen in IMG/M
3300005533Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005836Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBBEnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009525Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaGEnvironmentalOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300010341Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300014153Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaGEnvironmentalOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018064Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300022721Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022722Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025560Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026555Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300027570Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027641Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027662Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027706Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)EnvironmentalOpen in IMG/M
3300027795Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027965Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029944II_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030058Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1EnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031344Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaGHost-AssociatedOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300033887Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12270J11330_1001629143300000567Peatlands SoilMIYAHTRKRKRLPGGFFHLEEEKTRTRVSGFGHGDHIRLKDEYGNIWRGSAVRNQDNSVTYRFSDPHGHSFTGVSHDTVVTLRDDHGNIWKGFVG*
JGIcombinedJ13530_10169436723300001213WetlandMSNKKQRKGSGLAGGVFHLEEEKTKARVSGFGYDGNIKLKDEYGNIWLGSAERSYDNTVIYRFRDAKGRSLTGVSDHAVVTLRDEKGRTWKGFIG*
JGIcombinedJ26739_10000825733300002245Forest SoilMKKTLMIYGRSKKHTYIPGGFFHLEEEGTKTRVFGYGHGDAIKLKDEYGNIWQGSATRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGRGKTWKGFVD*
Ga0055452_1021403813300004018Natural And Restored WetlandsMIYSKRSRRNSVPGGFFHLEEEKTKTRVFGYGHGDYIKLKDEYGNEWIGSATLNADESIAYRFRNGKGKSLSGVSQSSVVTLRDEQGNTWKGFVD*
Ga0062385_1053814413300004080Bog Forest SoilMIYSKERKRARLPGGFFHLEEEKTRTRAFGFGHGDHIKLQDEYGIEWRGSAERNIDNSVTYRFRTSKGTNLSGVSTDATVVLRDGVGNTWKGFVG*
Ga0063454_10208960823300004081SoilFFHLEEEKTKARVSGYGHGDRIRLKDEYGKMWLGSAERGTGDTVVYRFRDGQGRTLTGVSESKVLTLRDEKGHTWKGIID*
Ga0062384_10044653113300004082Bog Forest SoilMIYAKDRKRTRLPGGFFHLEEEKTKTRVFGYGHGDHIKLKDEYGNIWLGSAVRTDDNSVEYRFRDGKGNSLSGISSDAVVTLRDGHGQTWKGFVD*
Ga0062389_10214294813300004092Bog Forest SoilMSYRQMIYAKQRKRMRLPGGFFHLEEEKTKTRVSGYGHGDHIKLKDEYGNIWHGSATRNFDNSIEYRFRDVKGRTLTGVSDNAVVTLRDEKGRTWKGVVD*
Ga0070738_1011539523300005531Surface SoilMIYSKQKKRSRLPGGFFHLEEENTKTRVFGYGHGDHIKLKDEYGNIWRGSATRNPDNSVVYRFRDAKGKSLSGVSQDSVVTLRDEEGHTWKGFVD*
Ga0070734_1031881723300005533Surface SoilMIYSKQKKRSLLPGGFFHLEDEKTKTRVFGFGHGDHIKLKDEYGNIWRGSATRNPDNSIVYRFRDGQGHSLSGVSEGAVITLRDEQGNTWKGFVD*
Ga0070733_1003330933300005541Surface SoilMIYAKERKRNRLPGGFFHLEDEKTKTRVFGFGHGDNIKLKDEYGNIWHGSAVRAPDNSVEYRFRDGKGHSLSGVANDSVVTLRDGRGTTWKGFVD*
Ga0070733_1105447623300005541Surface SoilMIYSKQRQRSRLPGGYFHLEEEKTKTRVSGYGHGDHIKLKDEYGNIWLGSATRNYDNSVVYRFRDGNGRTLTGVSENVVVTLRD
Ga0070732_1006826333300005542Surface SoilMIFTKQRKRSSLPGGFFHLEEEKTKTRVSGYGHGDHIKLKDEYGNIWRGSAVRNDDNSIVYRFSDGKGKSLSGVSDNVVVTLCDEDGRTWKGFVD*
Ga0070761_1029125213300005591SoilMIYAKHRKRALLPGGFFHLEDERTKTRVFGYGHGDNIKLKDEYGNIWLGSAVRADDNSVEYRFRDGKGSSLSGISNGEVVILRDGHGTTWKGFVGG*
Ga0074470_10495429933300005836Sediment (Intertidal)MAFAKKHNRTSLPGGFFHLEEEKTRTRATGYGHGDHIKLKDEYGNIWLGSAELADGNTVVYRFRDGKGRTLSGVSDSAVVILRDGSGNIWKGIVD*
Ga0074470_1126292153300005836Sediment (Intertidal)MPVSKSRKYPGIPGGFFHLEDEKSKARVTGYGHGDHIKLKDDFGNIWIGSAERGSDNSITYRFRDANGHSLSGISEGMSVTLRDERGRTWKGFVN*
Ga0075023_10031976923300006041WatershedsMPRSEVKIYSRVSRLSKSPGGYFHLEEEKTRTRVFGYGHGDHIKLADEYGNNWRGTAVRNPDNSITYRFRDHKGNSLSGVSHGDTVTLRDARGSIWKGFVGVGAIPALTGRGYLARSLQP
Ga0075028_10000917743300006050WatershedsVRNEVKIYSRVSRLSKSPGGYFHLEEEKTRTRVFGYGHGDHIKLADEYGNNWRGTAVRNPDNSITYRFRDHKGNSLSGVSHGDTVTLRDARGSIWKGFVS*
Ga0075028_10014172413300006050WatershedsMPRSEVKIYSRVSRLSKSPGGYFHLEEEKTRTRVFGYGHGDHIKLADEYGNNWRGNAVRNPDNSITYRFRDHNGNSLSGVSHGDTVTLRDARGNIWKG
Ga0075029_10000176053300006052WatershedsMIYGKRRKQHQVPGGYFHLEEEGTKTRVMGYGHGDMIKLQDEYGNIWKGSAERNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGRGKTWKGFIS*
Ga0075029_10083215513300006052WatershedsEYCKMIYSKERKRGRLPGGFFHLEEEKTRTRAFGFGHGDHIKLQDEYGIEWRGSAERNIDNSVTYRFRTSKGTNLSGVSTDATVVLRDGVGNTWKGFVG*
Ga0075018_1031785723300006172WatershedsMIFSKIHRQSNIPGGYFHLEEEKTKTRVAGFGHGDNIRLKDEYGNIWLGSAVRNPDNSVVYRFRNSKGKSLVGIADGEAVTLRDERGRTWKGFVG*
Ga0097621_10065135023300006237Miscanthus RhizosphereMIYSKERKRLRLPGGFFHLEEEKTRTRAFGYGHGDHIKLEDEYGTEWHGSAERNEDNSVTYRFRTSKGASLTGVSTDAIVVLRDARGNTWKGFVG*
Ga0075436_10140427713300006914Populus RhizosphereLEEEKTKTRVFGYGHGDHIKLKDEYGNIWRGSAMRNPDNSVSYRFRDDRGNSLSGVSEGDTVLLRDGKGKTWKGFVD*
Ga0099830_1085764323300009088Vadose Zone SoilMIYSKQRKHLHLPGGFFHLEEEKTKTRVFGYGHGDHIKLKDEYGNIWRGSAVRNPDNSVVYRFRDDKGRTLSGVSENTVVTLCDEKGSTWKGFID*
Ga0105248_1047797213300009177Switchgrass RhizosphereMIYSKERKRLRLPGGFFHLEEEKTRTRAFGYGHGDHIKLEDEYGTEWHGSAERNADNSITYRFRTSKGASLTGVSTDAIVVLRDARGNTWKGFVG*
Ga0116220_1006290423300009525Peatlands SoilMYARKKLRTLIPGGFFYLEEERTKTRVSGYGYGDSIKLKDEYGNEWLGSASRSDDNSVMYRFRNGAGRTLSGVAEGVALTLRDERGSTWKGFVG*
Ga0116215_151371813300009672Peatlands SoilNSTREHMIYAHTRKRKRLPGGFFHLEEEKTRTRVSGFGHGDHIRLKDEYGNIWRGSAVRNQDNSVTYRFSDPHGHSFTGVSHDTVVTLRDDHGNIWKGFVG*
Ga0074045_1011661923300010341Bog Forest SoilMYARLRIRSQEPGGFFYLEEERTKTRVTGYGHGDHIKLKDEYGNEWQGSAARADDNSVVYRFRDRKGRSLTGVSDGTVLTLRDGRGSTWKGFVD*
Ga0126379_1377779313300010366Tropical Forest SoilTGSTLIYNKDRRRSRLPGGYFHLEEESTKTRAFGYGHGDHIKLQDEYGTEWRGAATLNPDSTVTYRFRTSRGKNLTGISTDEIVVLRDERGSIWKGFVG*
Ga0134128_1111339323300010373Terrestrial SoilMIYAKPRKRSKMPGGFFHLEEEKTKTRVFGFGHGDNIKLKDEYGNIWRGSATRNPDNSIVYRFKDGTGRSLSGVSHDAVVTLRDEHGKTWKGFVD*
Ga0126383_1082289823300010398Tropical Forest SoilLIYNKDRRRSRLPGGYFHLEEESTKTRAFGYGHGDHIKLQDEYGTEWRGAATLNPDSTVTYRFRTSRGKNLTGISTDEIVVLRDERGSIWKGFVG*
Ga0137389_1166464113300012096Vadose Zone SoilMSRADVKIYTRQRRLSKAPGGYFHLEEEKSRTRVFGYGNGDHIKRTDEYGNLWRGTEERNPDNSIVYRFRDHKGNSLTGVAHGDVVTLRDASGRIWKGFVS*
Ga0137388_1180401013300012189Vadose Zone SoilVRPMIYSKQRKHLHLPGGFFHLEEEKTKTRVFGYGHGDHIKLKDEYGNIWRGSAVRNPDNSVVYRFRDDKGRTLSGVSENTVVTLCDEKGSTWKGFID*
Ga0137362_1119185323300012205Vadose Zone SoilMKAMPRNDVRIYSRVSRLSKSPGGYFHLEEEKTRTRVFGYGHGDHIKLTDEYGNNWRGTAARNPDNSIVYRFRDHKGNSLSGVSNGDVVTLRDARGNIWKGFVG*
Ga0137390_1025878023300012363Vadose Zone SoilMIYSKQRKRLHLPGGFFHLEEEKTKTRVFSYGHGDHIKLKDEYGNIWRGSAVRNPDNSVVYRFRDDKGRTLSGVSENTVVTLCDEKGSTWKGFID*
Ga0150984_10678893313300012469Avena Fatua RhizosphereQHDSRRSRIPGGYFHLEEERTKTRAQGYGHGDHIKLTDEYGNTWRGSATRGEDNTVSYRFRDAKGNSLNGVSSDNMVTLRDGRGNIWKGFIG*
Ga0137359_1028353533300012923Vadose Zone SoilMIYSKQRKRLHLPGGFFHLEEEKTKTRVFGYGHGDHIKLKDEYGNIWRGSAVRNPDNSVVYRFRDDKGRTLSGVSENTVVTLCDEKGSTWKGFID*
Ga0181527_102333643300014153BogMYARLRIRSQEPGGFFYLEEERTKTRVTGYGHGDHIKLKDEYGNEWLGSAARADDNSVVYRFRDRKGRSLTGVSDGTVLTLRDGRGSTWKGFVD*
Ga0182018_1018896123300014489PalsaMIYAKRRKRSRLPGGFFHLEDEKTKTRVSGFGHGDNIKLKDEYGNTWFGSAVRAPDNSVEYRFRDGKGNSLSGVANDAVVTLRDGRGTTWKGFVD*
Ga0182024_10000616583300014501PermafrostMIYAKQRKRNRLPGGFFHLEDEKTKTRVFGYGHGDNIKLKDEYGNIWLGSAVRAPDNSVEYRFRDGKGNSLSGVANDSVVTLRDGRGTTWKGFVD*
Ga0182030_1011425933300014838BogMIYGKRRKQHQVPGGYFHLEEEGTKTRVMGYGHGDMIKLQDEYGNIWKGSAERNDDNSVVYRFRDGKGRSLSGVSDNVTVTLRDGRGKTWKGFIS*
Ga0182030_1077372623300014838BogMIYAKQRKRHRLPGGYFHLEDEKTKTRVSGYGHGDHIKLKDEYGNLWLGSAVRADDNSVEYRFRDGKGNSLSGVSSDAVVTLRDGHGRTWKGFVD*
Ga0182041_1232460013300016294SoilMIYGKERKLSRIPGGFFHLEEEGTKTRVFGYGHGDNIRLKDEYGNIWNGSAVRNPDNSVVYRFRDGKGRSLSGVSDNVT
Ga0187783_1130296223300017970Tropical PeatlandMIYGRHKKISHIPGGFFHLEEEGTKTRVFGYGHGDLIKLKDEYGNIWQGSAVRNHDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGQGKTWKGFID
Ga0187781_1013690023300017972Tropical PeatlandMMYGQSRKRKRVPGGFFHLEEEKTRTRVTGYGHGDHIKLKDEYGNIWRGTAVRNLDSSVTYRFTAAGGRSLSGVSSDATVTLRDEHGNIWEGFVD
Ga0187784_1003945713300018062Tropical PeatlandIPGGFFHLEEERTKTRVSGYGYGEHIKLKDEYGNEWLGSASRADDNSVVYRFRDRKGRSLTGVSDNVSLTLRDERGATWKGFIG
Ga0187773_1109780913300018064Tropical PeatlandMAARVKTREKIPGGFFYLEEERTRTRVSGYGYGDYIKLKDEYGNEWLGSASRADDNSVVYRFRDRNGHSLTGVSDSVALTLRDERGSTWKGFIG
Ga0187770_1139347913300018090Tropical PeatlandMHTRVRLHSRLPGGFFYLEEERTKTRVSGYGYGEHIKLKDEYGNEWLGSASRSDDNNSVFYRFKDRDGRSLSGVADGAVLTLRDDHGATWKGFVD
Ga0210407_1081821023300020579SoilMIYSKERKRLRLPGGFFHLEEEKTRTRAFGYGHGDHIKLEDEYGIEWRGSAERNPDNSVTYRFVTSKGANLTGMSTDAMVVLRDGRGNTWKGFIG
Ga0210400_1094898113300021170SoilSHIPGGFFHLEEEGTKTRVFGYGHGDYIKLKDEYGNIWQGSATRSDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGTGKTWKGFID
Ga0210388_10000077793300021181SoilMIFGRTRKHTYIPGGFFHLEEEGTKTRVFGYGHGDSIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGSGKTWKGFID
Ga0210393_1012290723300021401SoilMKKTLMIYGRSKKHTYIPGGFFHLEEEGTKTRVFGYGHGDAIKLKDEYGNIWQGSATRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGRGKTWKGFVD
Ga0210393_1059618123300021401SoilMIYGRSNKRTYIPGGFFHLEEEGTKTRVFGYGHGDAIKLKDEYGNIWQGSATRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGSGKTWKGFVD
Ga0210385_1013919423300021402SoilMIYAKSRKNLRLPGGFFHLEEEKSKTRVFGYGHGEHIKLKDEYGNIWRGSATRNDDNSVEYRFRDGRGKSLSGISSDAVVTLRDEHGRTWKGVVD
Ga0210385_1095218613300021402SoilMIFGRQRKHTYIPGGFFHLEEEGTKTRVFGYGHGDSIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGTGKTWKGFID
Ga0210383_1100488913300021407SoilPGGFFHLEEEGTKTRVFGYGHGDAIKLKDEYGNIWQGSATRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGSGKTWKGFVD
Ga0210394_1042015913300021420SoilMIYAKPRKRSRIPGGFFHLQEEKSKTRVFGYGHGDHIKLKDEYGNIWRGSATRHPDNTVEYRFRNERGKSLTGISSGAVVTLRDESGQTWKGFVD
Ga0210392_1045706513300021475SoilMIFGRNRKHSHIPGGFFHLEEEGTKTRVFGYGHGDYIKLKDEYGNIWQGSATRSDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGTGKTWKGFID
Ga0210398_1054850923300021477SoilMIYGRNRKHTYIPGGFFHLEEEGTKTRVFGYGHGDAIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGTGKTWKGFID
Ga0210398_1153369113300021477SoilCWVIIEESPMIYGRSNKRTYIPGGFFHLEEEGTKTRVFGYGHGDSIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGSGKTWKGFID
Ga0242666_103145823300022721SoilAKPRKRSLIPGGYFHLQEEKSKTRVFGYGHGDHIKLKDEYGNIWRGSATRHPDNTVEYRFRNERGKSLSGISSGAMVTLRDEGGQTWKGFVD
Ga0242666_119282623300022721SoilMIYAQVRKRGRVPGGFFHLEEEKTKTRVTGSGHGDHIRLKDEYGNIWRGSAVRNPDNSVTYRFNDPSGHSLSGVSSDAVVTLRDERGSIWKGFVD
Ga0242657_103994523300022722SoilVSTAMIYAKPRKRSRIPGGFFHLQEEKSKTRVFGYGHGDHIKLKDEYGNIWRGSATRHPDNTVEYRFRNERGKSLTGISSGAVVTLRDESGQTWKGFVD
Ga0210108_100819023300025560Natural And Restored WetlandsMAFAKKHNRTSLPGGFFHLEEEKTRTRATGYGHGDHIKLKDEYGNIWLGSAELADGNTVVYRFRDGKGRTLSGVSDSAVVILHDGSGNIWKGIVD
Ga0207711_1023810923300025941Switchgrass RhizosphereMIYSKERKRLRLPGGFFHLEEEKTRTRAFGYGHGDHIKLEDEYGTEWHGSAERNADNSITYRFRTSKGASLTGVSTDAIVVLRDARGNTWKGFVG
Ga0179593_110957523300026555Vadose Zone SoilMIYSKERKRLRLPGGFFHLEEEKTRTRAFGYGHGDHIKLEDEYGIEWRGSAERNPDNSVTYRFVTSKGANLTGVSTDAMVVLRDGRGNTWKGFIG
Ga0208043_108996223300027570Peatlands SoilTRKRKRLPGGFFHLEEEKTRTRVSGFGHGDHIRLKDEYGNIWRGSAVRNQDNSVTYRFSDPHGHSFTGVSHDTVVTLRDDHGNIWKGFVG
Ga0208827_110537823300027641Peatlands SoilMIYAHTRKRKRLPGGFFHLEEEKTRTRVSGFGHGDHIRLKDEYGNIWRGSAVRNQDNSVTYRFSDPHGHSFTGVSHDTVVTLRDDHGNIWKGFVG
Ga0208565_122319513300027662Peatlands SoilNSTREHMIYAHTRKRKRLPGGFFHLEEEKTRTRVSGFGHGDHIRLKDEYGNIWRGSAVRNQDNSVTYRFSDPHGHSFTGVSHDTVVTLRDDHGNIWKGFVG
Ga0209581_100715543300027706Surface SoilMIYSKQKKRSRLPGGFFHLEEENTKTRVFGYGHGDHIKLKDEYGNIWRGSATRNPDNSVVYRFRDAKGKSLSGVSQDSVVTLRDEEGHTWKGFVD
Ga0209139_1024157913300027795Bog Forest SoilFFHLEEEKTKTRVFGYGHGDHIKLKDEYGNIWLGSAVRTDDNSVEYRFRDGKGNSLSGISSDAVVTLRDGHGQTWKGFVD
Ga0209167_1000237223300027867Surface SoilMIYAKERKRNRLPGGFFHLEDEKTKTRVFGFGHGDNIKLKDEYGNIWHGSAVRAPDNSVEYRFRDGKGHSLSGVANDSVVTLRDGRGTTWKGFVD
Ga0209590_1076706023300027882Vadose Zone SoilMIFSKQRKRTHVPGGFFHLEEEKSKTRVFGYGHGDHIKLKDEYGNIWRGSALRNPDNSVVYRFRDAEGHSLTGVSENVLVTLRDEKD
Ga0209415_1048020823300027905Peatlands SoilMIYASKKTRLRLPGGYFHLEDEKTKTRVAGYGHGEDIKLKDEYGNIWRGSATRADDNSIAYRFRDGRGNSLSGVSSDAVVTLRDGKGNVWKGFIG
Ga0209415_1093987223300027905Peatlands SoilMGTAMIYAKPRRRSRTPGGYFHLQEENTKTRVSGYGHGDHIKLKDEYGNIWFGSATRHPDNTVEYRFRNEHGKSLSGISSDAVVTLRDESGQTWKGFID
Ga0209006_1080224113300027908Forest SoilMDEGPMIFGRHKKQTYIPGGFFHLEEEGTKTRVYGYGHGDAIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGKGKTWKAFI
Ga0209583_1048064113300027910WatershedsNRAMPRNEVKIFSRVSRLSKSPGGYFHLEEEKTRTRVFGYGHGDHIKLADEYGNNWRGNAVRNPDNSITYRFRDHKGNSLSGVSHGDTVTLRDARGSIWKGFVG
Ga0209698_10000484333300027911WatershedsMIYGKRRKQHQVPGGYFHLEEEGTKTRVMGYGHGDMIKLQDEYGNIWKGSAERNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGRGKTWKGFIS
Ga0209062_120501023300027965Surface SoilMGRAPVQYRPMIYSKQKKRSRLPGGFFHLEEENTKTRVFGYGHGDHIKLKDEYGNIWRGSATRNPDNSVVYRFRDAKGKSLSGVSQDSVVTLRDEEGHTWKGFVD
Ga0222749_1005194233300029636SoilMIYAQSRKRRRIPGGFFHLEEEKTKTRVAGYGHGDHIRLKDEYGNIWRGSAVRNQDNSVTYRFSDPHGHSFTGVSQDAVVTLRDDHGNIWKGFVG
Ga0311340_1126666823300029943PalsaTAMIYAKQRKRARLPGGFFHLEDEKTKTRVFGYGHGDNIKLKDECGNIFLGSAVRSDDNSVEYRFRDGKGNSLSGISNGEVVILRDGRGTTWKGFVG
Ga0311352_1112531723300029944PalsaVIMNKGPMIFGRKKKHTYIPGGFFHLEEEGTKTRVFGYGHGDSIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGAGRTWKGFID
Ga0311371_1196984523300029951PalsaMIYGRSKKHTYIPGGFFHLEEEGTKTRVFGYGHGDAIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGTGKTWKGFID
Ga0311339_1013643833300029999PalsaMIFGRKKKHTYIPGGFFHLEEEGTKTRVFGYGHGDSIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGAGRTWKGFID
Ga0302179_1045791313300030058PalsaMNKGPMIFGRKKKHTYIPGGFFHLEEEGTKTRVFGYGHGDSIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGAGRTWKGFID
Ga0311372_1260295723300030520PalsaIFGRKKKHTYIPGGFFHLEEEGTKTRVFGYGHGDSIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGAGRTWKGFID
Ga0265760_1002117113300031090SoilMIYAKPRKRPRMPGGYFHLQEEASKTRVFGYGHGDHIKLKDEYGNIWRGSATRHPDNSVEYRFRNERGKSLSGISTDAVVTLRDESGRTWKGFVD
Ga0170824_10601668513300031231Forest SoilPGGFFHLEEEGTKTRVFGYGHGDAIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGTGKTWKGFID
Ga0170824_10662885723300031231Forest SoilMIYAKSRKNLRLPGGFFHLEEEKSKTRVFGYGHGEHIKLKDEYGNIWRGSATRNADNSVEYRFRDGRGKSLSGISSDAVVTLRDEHGRTWKGVVD
Ga0302325_1090578823300031234PalsaMIYTKQRKRSRMPGGFFHLEEEKTKTRVSGYGHGDHIKLKDEYGNIWRGSATRNPDNSIEYRFRDGKGRTLTGISDNVVVTLRDEKGRTWKGVVD
Ga0302325_1176860823300031234PalsaMIYGRSKKHTYIPGGFFHLEEEGTKTRVFGYGHGDAIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTETLLDGTGKTWKGFKD
Ga0302324_10242972423300031236PalsaMIYAKARKRSRLPGGFFHLEDEKTKTRVFGYGHGDSIKLKDEYGNIWQGSAVRAMDNSVEYRFRDGKGNSLSGVSNGAVVTLRDGRGTTWKGFVA
Ga0265316_1088748213300031344RhizosphereMIYSRTKKRQRLPGGFFHLEEEKTRTRVFGFGHGDMIKLKDEYGNTWRGSATRNPDNSVVYRFRDGMGHSLSGVSND
Ga0170818_10238683123300031474Forest SoilMMDQSPMIYGRTKKQTYIPGGFFHLEEEGTKTRVFGYGHGDAIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGTGKTWKGFID
Ga0302326_1114825313300031525PalsaMIYAKQRKRARLPGGFFHLEDEKTKTRVFGYGHGDNIKLKDECGNIFLGSAVRSDDNSVEYRFRDGKGNSLSGISNGEVVILRDGRGTTWKGFVG
Ga0302326_1187596623300031525PalsaGFFYLEEERTKTRVSGYGYGDHIKLKDEYGNEWLGSASRADDNSVLYRFRDRKGRSLTGVSDNVTLTLRDERGSTWKGFID
Ga0310686_10037719043300031708SoilMDQIPMIYGRSKKQTYIPGGFFHLEEEGTKTRVFGYGHGDAIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGTGKTWKGFID
Ga0310686_10323259613300031708SoilMIFGRHRQHTYIPGGFFHLEEEGTKTRVFGYGHGDSIKLKDEYGNIWRGSATRSDDNSVVYRFRDGKGRTLSGVSVNVTVTLRDGRGKTWKGFID
Ga0310686_10651212523300031708SoilGFFHLEEEGTKTRVFGYGHGDAIKLKDEYGNIWQGSATRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGTGKTWKGFVD
Ga0310686_10714042313300031708SoilLPGGFFHLEDEKTKTRVFGYGHGDNIRLKDEYGNIWLGSAVRSSDNSVEYRFRDGRGNSLSGVANDSVITLRDGRGTTWKGFVD
Ga0310686_10839901533300031708SoilMDQTPMIYGRSKKHTYIPGGFFHLEEEGTKTRVFGYGHGDAIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGTGKTWKGFID
Ga0310686_10855657023300031708SoilMIYGRSRKHTYIPGGFFHLEEEGTKTRVFGYGHGDSIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGTGKTWKGFID
Ga0310686_11099592123300031708SoilMIYAKQRKRNRLPGGFFHLEDEKTKTRVFGYGHGDNIKLKDEYGNIWLGSAVRAPDNSVEYRFRDGKGNSLSGVANDSVVTLRDGRGTTWKGFVD
Ga0310686_11721483213300031708SoilMIYAKPRRRSRMPGGYFHLQEEKSKTRVFGYGHGDHIKLKDEYGNEWMGSAARADDNSVVYRFRDRKGRSLTGVSDGTVLTLRDGRGSTWKGFVD
Ga0310686_11803237933300031708SoilMDEGPMIFGRHKKQTYIPGGFFHLEEEGTKTRVYGYGHGDAIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGKGKTWKGFID
Ga0310686_11804785913300031708SoilMIYSKPRRRSRIPGGYFHLQEEKSKTRVFGYGHGDHIKLKDEYGNIWRGSATRHPDNTVEYRFRNERGKSLSGISSDAVVTLRDESGRTWKGFVD
Ga0307474_1004894443300031718Hardwood Forest SoilMIYGRSRKHTYIPGGFFHLEEEGTKTRVFGYGHGDAIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGTGKTWKGFID
Ga0307474_1069842523300031718Hardwood Forest SoilMDKSPMIYGRSKKQTYIPGGFFHLEEEGTKTRVFGYGHGDAIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGTGKTWKGFID
Ga0311301_1001412393300032160Peatlands SoilMYARKKLRTLIPGGFFYLEEERTKTRVSGYGYGDSIKLKDEYGNEWLGSASRSDDNSVMYRFRNGAGRTLSGVAEGVALTLRDERGSTWKGFVG
Ga0348332_1228525723300032515Plant LitterMHARTKTRAKIPGGFFYLEEERTKTRVSGYGYGDHIKLKDEYGNEWLGSASRADDNSVMYRFRDRKGRSLTGVSDNVTLTLRDERGSTWKGFID
Ga0348332_1345916413300032515Plant LitterMIYGRSKKQTYIPGGFFHLEEEGTKTRVFGYGHGAAIKLKDEYGNIWQGSAVRNDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGTGKTWKGFID
Ga0335085_1173477413300032770SoilMRNRIKTRERIPGGFFYLEEERTKTRVSGYGYGDHIKLKDEYGNEWLGSASRADDNSVVYRFRDRKGHSLTGVSDNVALTLRDERGATWKGFIG
Ga0335082_1154516123300032782SoilTRERIPGGFFYLEEERTKTRVSGYGYGDHIKLKDEYGNEWLGSASRADDNSVVYRFRDRKGHSLTGVSDNVALTLRDERGATWKGFIG
Ga0335078_1219208613300032805SoilMIFAKQRKRSSLPGGYFHLEEEKTKTRVSGYGHGDHIKLKDEYGNIWRGSAVRNDDNSIAYRFSDGKGKSLSGVSDNVVVTLCDEEGNTWKGFVD
Ga0335070_100000202553300032829SoilMIYGKRRKQSRVPGGFFHLEEEGTKTRVVGYGHGDNIKLKDEYGNIWQGSAERTDDNSVVYRFRDGKGRTLSGVSDNVTVTLRDGKGKTWKGFID
Ga0335081_1077167133300032892SoilMIYAKQRKRNRLPGGHFHLEEEKTKTRVSGYGHGDHIKLKDEYGNIWLGSATRADDNSVEYRFKDGRGNALSGVSQDAVVTLRDGRGNTWKGFID
Ga0334790_191101_339_5933300033887SoilLPGGYFHLEDEKTKTRVSGYGHGDHIKLKDEYGNLWLGSAVRADDNSVEYRFRDGKGNSLSGVSSDAVVTLRDGHGRTWKGFVD

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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